RPS-BLAST 2.2.26 [Sep-21-2011]

Database: pdb70 
           27,921 sequences; 6,701,793 total letters

Searching..................................................done

Query= psy15655
         (110 letters)



>1m56_C Cytochrome C oxidase; membrane protein, oxidoreductase; HET: HEA
          PEH; 2.30A {Rhodobacter sphaeroides} SCOP: f.25.1.1
          PDB: 1m57_C*
          Length = 266

 Score = 25.2 bits (56), Expect = 5.4
 Identities = 8/31 (25%), Positives = 18/31 (58%), Gaps = 1/31 (3%)

Query: 30 LMIFGIVMIFFHGKVMTLIYASLGAILFSVY 60
          +M+FG V+ + HG    +    L  +L++++
Sbjct: 27 VMLFGAVL-WMHGSGPWMGLIGLVVVLYTMF 56


>3qf4_A ABC transporter, ATP-binding protein; multidrug transporter,
           transport protein; HET: ANP; 2.90A {Thermotoga maritima}
          Length = 587

 Score = 25.2 bits (56), Expect = 5.6
 Identities = 6/35 (17%), Positives = 14/35 (40%), Gaps = 1/35 (2%)

Query: 29  VLMIFGIVMIFFHGKVMTLIYA-SLGAILFSVYLI 62
           +L + GIVM       ++ +    +  I+     +
Sbjct: 149 LLFVGGIVMAVSINVKLSSVLIFLIPPIVLLFVWL 183


>3kp9_A Vkorc1/thioredoxin domain protein; warfarin, disulfide formation,
           blood coagulation, oxidoreduc blood
           coagulation,oxidoreductase; HET: U10; 3.60A
           {Synechococcus SP}
          Length = 291

 Score = 25.0 bits (53), Expect = 6.8
 Identities = 6/50 (12%), Positives = 18/50 (36%), Gaps = 1/50 (2%)

Query: 22  VLFVCVIVLMIFGIVMIFFHGKVMTLIYA-SLGAILFSVYLIYDTQLMIG 70
           + F+ V+ L +    +          ++        F +Y++Y    ++ 
Sbjct: 78  LGFLGVLALAVLPDGLPLVKRWRWPALFGLVSAMTAFEMYMLYLMVAVLR 127


>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
           programmed cell death; HET: DTP; 6.90A {Drosophila
           melanogaster} PDB: 3iz8_A*
          Length = 1221

 Score = 24.8 bits (53), Expect = 8.4
 Identities = 7/31 (22%), Positives = 16/31 (51%), Gaps = 2/31 (6%)

Query: 76  SISPEEY--IFASLNLYLDVINIFLSILQIL 104
            + P EY  +F  L+++    +I   +L ++
Sbjct: 365 VLEPAEYRKMFDRLSVFPPSAHIPTILLSLI 395


  Database: pdb70
    Posted date:  Sep 4, 2012  3:40 AM
  Number of letters in database: 6,701,793
  Number of sequences in database:  27,921
  
Lambda     K      H
   0.329    0.147    0.451 

Gapped
Lambda     K      H
   0.267   0.0639    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 1,752,101
Number of extensions: 94546
Number of successful extensions: 317
Number of sequences better than 10.0: 1
Number of HSP's gapped: 317
Number of HSP's successfully gapped: 30
Length of query: 110
Length of database: 6,701,793
Length adjustment: 74
Effective length of query: 36
Effective length of database: 4,635,639
Effective search space: 166883004
Effective search space used: 166883004
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 51 (23.6 bits)