RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy15655
         (110 letters)



>d2fzpa1 d.345.1.1 (A:193-317) E3 ubiquitin-protein ligase NRDP1
           {Human (Homo sapiens) [TaxId: 9606]}
          Length = 125

 Score = 23.2 bits (50), Expect = 7.1
 Identities = 7/9 (77%), Positives = 8/9 (88%)

Query: 34  GIVMIFFHG 42
           G+VMIF HG
Sbjct: 113 GLVMIFAHG 121


>d1j71a_ b.50.1.2 (A:) Acid protease {Yeast (Candida tropicalis)
           [TaxId: 5482]}
          Length = 334

 Score = 23.7 bits (50), Expect = 7.4
 Identities = 16/117 (13%), Positives = 31/117 (26%), Gaps = 12/117 (10%)

Query: 1   MSWQPGGQPGYPPYGQG---LESPVLFVCVIVLMIFGIVMIFFHGKVMTLIYASLGAIL- 56
           ++  P           G    +   +     V++  G  + +F           +GA   
Sbjct: 184 LTALPVTSSVELRVHLGSINFDGTSVSTNADVVLDSGTTITYFSQSTADKFARIVGATWD 243

Query: 57  --------FSVYLIYDTQLMIGGNHRYSISPEEYIFASLNLYLDVINIFLSILQILG 105
                    S  L  D         + ++   E I    +  +    I  +   ILG
Sbjct: 244 SRNEIYRLPSCDLSGDAVFNFDQGVKITVPLSELILKDSDSSICYFGISRNDANILG 300


>d1qi9a_ a.111.1.2 (A:) Haloperoxidase (bromoperoxidase)
           {Ascophyllum nodosum [TaxId: 52969]}
          Length = 555

 Score = 23.3 bits (50), Expect = 8.2
 Identities = 7/29 (24%), Positives = 9/29 (31%), Gaps = 1/29 (3%)

Query: 5   PGGQPGYPPYGQGLESPVLFVCVIVLMIF 33
             G P +P Y  G  +        VL   
Sbjct: 404 QEGSPTHPSYPSG-HATQNGAFATVLKAL 431


>d1v54k_ f.23.5.1 (K:) Mitochondrial cytochrome c oxidase subunit
          VIIb {Cow (Bos taurus) [TaxId: 9913]}
          Length = 49

 Score = 21.8 bits (46), Expect = 9.8
 Identities = 10/33 (30%), Positives = 15/33 (45%)

Query: 40 FHGKVMTLIYASLGAILFSVYLIYDTQLMIGGN 72
          FH K    + AS      +V++   TQ+ I  N
Sbjct: 4  FHDKYGNAVLASGATFCVAVWVYMATQIGIEWN 36


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.329    0.147    0.451 

Gapped
Lambda     K      H
   0.267   0.0630    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 425,246
Number of extensions: 17362
Number of successful extensions: 71
Number of sequences better than 10.0: 1
Number of HSP's gapped: 66
Number of HSP's successfully gapped: 18
Length of query: 110
Length of database: 2,407,596
Length adjustment: 69
Effective length of query: 41
Effective length of database: 1,460,226
Effective search space: 59869266
Effective search space used: 59869266
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 47 (22.1 bits)