BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= psy15658
         (235 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|2WIE|A Chain A, High-Resolution Structure Of The Rotor Ring From A
          Proton Dependent Atp Synthase
 pdb|2WIE|B Chain B, High-Resolution Structure Of The Rotor Ring From A
          Proton Dependent Atp Synthase
 pdb|2WIE|C Chain C, High-Resolution Structure Of The Rotor Ring From A
          Proton Dependent Atp Synthase
 pdb|2WIE|D Chain D, High-Resolution Structure Of The Rotor Ring From A
          Proton Dependent Atp Synthase
 pdb|2WIE|E Chain E, High-Resolution Structure Of The Rotor Ring From A
          Proton Dependent Atp Synthase
 pdb|2XQS|A Chain A, Microscopic Rotary Mechanism Of Ion Translocation In The
          Fo Complex Of Atp Synthases
 pdb|2XQS|B Chain B, Microscopic Rotary Mechanism Of Ion Translocation In The
          Fo Complex Of Atp Synthases
 pdb|2XQS|C Chain C, Microscopic Rotary Mechanism Of Ion Translocation In The
          Fo Complex Of Atp Synthases
 pdb|2XQS|D Chain D, Microscopic Rotary Mechanism Of Ion Translocation In The
          Fo Complex Of Atp Synthases
 pdb|2XQS|E Chain E, Microscopic Rotary Mechanism Of Ion Translocation In The
          Fo Complex Of Atp Synthases
 pdb|2XQU|A Chain A, Microscopic Rotary Mechanism Of Ion Translocation In The
          Fo Complex Of Atp Synthases
 pdb|2XQU|B Chain B, Microscopic Rotary Mechanism Of Ion Translocation In The
          Fo Complex Of Atp Synthases
 pdb|2XQU|C Chain C, Microscopic Rotary Mechanism Of Ion Translocation In The
          Fo Complex Of Atp Synthases
 pdb|2XQU|D Chain D, Microscopic Rotary Mechanism Of Ion Translocation In The
          Fo Complex Of Atp Synthases
 pdb|2XQU|E Chain E, Microscopic Rotary Mechanism Of Ion Translocation In The
          Fo Complex Of Atp Synthases
 pdb|2XQT|A Chain A, Microscopic Rotary Mechanism Of Ion Translocation In The
          Fo Complex Of Atp Synthases
 pdb|2XQT|B Chain B, Microscopic Rotary Mechanism Of Ion Translocation In The
          Fo Complex Of Atp Synthases
 pdb|2XQT|C Chain C, Microscopic Rotary Mechanism Of Ion Translocation In The
          Fo Complex Of Atp Synthases
 pdb|2XQT|D Chain D, Microscopic Rotary Mechanism Of Ion Translocation In The
          Fo Complex Of Atp Synthases
 pdb|2XQT|E Chain E, Microscopic Rotary Mechanism Of Ion Translocation In The
          Fo Complex Of Atp Synthases
          Length = 82

 Score = 29.3 bits (64), Expect = 2.0,   Method: Compositional matrix adjust.
 Identities = 13/27 (48%), Positives = 20/27 (74%)

Query: 69 RIKTKNLISVIFCEAVAIYGLITAIVL 95
          +I+   L+S+ F EA+ IYGL+ A+VL
Sbjct: 49 KIRGTLLLSLAFMEALTIYGLVVALVL 75


>pdb|2W5J|A Chain A, Structure Of The C14-Rotor Ring Of The Proton
          Translocating Chloroplast Atp Synthase
 pdb|2W5J|B Chain B, Structure Of The C14-Rotor Ring Of The Proton
          Translocating Chloroplast Atp Synthase
 pdb|2W5J|C Chain C, Structure Of The C14-Rotor Ring Of The Proton
          Translocating Chloroplast Atp Synthase
 pdb|2W5J|D Chain D, Structure Of The C14-Rotor Ring Of The Proton
          Translocating Chloroplast Atp Synthase
 pdb|2W5J|E Chain E, Structure Of The C14-Rotor Ring Of The Proton
          Translocating Chloroplast Atp Synthase
 pdb|2W5J|F Chain F, Structure Of The C14-Rotor Ring Of The Proton
          Translocating Chloroplast Atp Synthase
 pdb|2W5J|G Chain G, Structure Of The C14-Rotor Ring Of The Proton
          Translocating Chloroplast Atp Synthase
 pdb|2W5J|H Chain H, Structure Of The C14-Rotor Ring Of The Proton
          Translocating Chloroplast Atp Synthase
 pdb|2W5J|I Chain I, Structure Of The C14-Rotor Ring Of The Proton
          Translocating Chloroplast Atp Synthase
 pdb|2W5J|J Chain J, Structure Of The C14-Rotor Ring Of The Proton
          Translocating Chloroplast Atp Synthase
 pdb|2W5J|K Chain K, Structure Of The C14-Rotor Ring Of The Proton
          Translocating Chloroplast Atp Synthase
 pdb|2W5J|L Chain L, Structure Of The C14-Rotor Ring Of The Proton
          Translocating Chloroplast Atp Synthase
 pdb|2W5J|M Chain M, Structure Of The C14-Rotor Ring Of The Proton
          Translocating Chloroplast Atp Synthase
 pdb|2W5J|V Chain V, Structure Of The C14-Rotor Ring Of The Proton
          Translocating Chloroplast Atp Synthase
          Length = 78

 Score = 27.3 bits (59), Expect = 6.8,   Method: Compositional matrix adjust.
 Identities = 12/27 (44%), Positives = 19/27 (70%)

Query: 69 RIKTKNLISVIFCEAVAIYGLITAIVL 95
          +I+   L+S+ F EA+ IYGL+ A+ L
Sbjct: 47 KIRGTLLLSLAFMEALTIYGLVVALAL 73


>pdb|3V3C|A Chain A, Crystal Structure Of Chloroplast Atp Synthase C-ring
          From Pisum Sativum
 pdb|3V3C|B Chain B, Crystal Structure Of Chloroplast Atp Synthase C-ring
          From Pisum Sativum
 pdb|3V3C|C Chain C, Crystal Structure Of Chloroplast Atp Synthase C-ring
          From Pisum Sativum
 pdb|3V3C|D Chain D, Crystal Structure Of Chloroplast Atp Synthase C-ring
          From Pisum Sativum
 pdb|3V3C|E Chain E, Crystal Structure Of Chloroplast Atp Synthase C-ring
          From Pisum Sativum
 pdb|3V3C|F Chain F, Crystal Structure Of Chloroplast Atp Synthase C-ring
          From Pisum Sativum
 pdb|3V3C|G Chain G, Crystal Structure Of Chloroplast Atp Synthase C-ring
          From Pisum Sativum
 pdb|3V3C|H Chain H, Crystal Structure Of Chloroplast Atp Synthase C-ring
          From Pisum Sativum
 pdb|3V3C|I Chain I, Crystal Structure Of Chloroplast Atp Synthase C-ring
          From Pisum Sativum
 pdb|3V3C|J Chain J, Crystal Structure Of Chloroplast Atp Synthase C-ring
          From Pisum Sativum
 pdb|3V3C|K Chain K, Crystal Structure Of Chloroplast Atp Synthase C-ring
          From Pisum Sativum
 pdb|3V3C|L Chain L, Crystal Structure Of Chloroplast Atp Synthase C-ring
          From Pisum Sativum
 pdb|3V3C|M Chain M, Crystal Structure Of Chloroplast Atp Synthase C-ring
          From Pisum Sativum
 pdb|3V3C|N Chain N, Crystal Structure Of Chloroplast Atp Synthase C-ring
          From Pisum Sativum
          Length = 79

 Score = 27.3 bits (59), Expect = 6.9,   Method: Compositional matrix adjust.
 Identities = 12/27 (44%), Positives = 19/27 (70%)

Query: 69 RIKTKNLISVIFCEAVAIYGLITAIVL 95
          +I+   L+S+ F EA+ IYGL+ A+ L
Sbjct: 46 KIRGTLLLSLAFMEALTIYGLVVALAL 72


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.321    0.137    0.393 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,905,666
Number of Sequences: 62578
Number of extensions: 207204
Number of successful extensions: 617
Number of sequences better than 100.0: 5
Number of HSP's better than 100.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 610
Number of HSP's gapped (non-prelim): 8
length of query: 235
length of database: 14,973,337
effective HSP length: 96
effective length of query: 139
effective length of database: 8,965,849
effective search space: 1246253011
effective search space used: 1246253011
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 50 (23.9 bits)