Query psy15658
Match_columns 235
No_of_seqs 199 out of 1302
Neff 4.8
Searched_HMMs 46136
Date Fri Aug 16 18:17:07 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy15658.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/15658hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PRK06558 V-type ATP synthase s 100.0 9.8E-36 2.1E-40 251.0 17.3 156 21-187 4-159 (159)
2 KOG0233|consensus 100.0 1.3E-35 2.8E-40 252.3 6.3 183 3-188 12-194 (196)
3 PRK09621 V-type ATP synthase s 100.0 2.7E-32 5.8E-37 226.3 16.1 137 33-182 4-140 (141)
4 PRK08344 V-type ATP synthase s 100.0 4.4E-32 9.6E-37 228.4 15.9 152 33-184 2-154 (157)
5 PRK14893 V-type ATP synthase s 100.0 1.6E-30 3.4E-35 219.8 17.0 148 32-185 9-156 (161)
6 PRK06649 V-type ATP synthase s 100.0 2.6E-30 5.7E-35 214.6 15.1 134 33-182 3-141 (143)
7 PRK06271 V-type ATP synthase s 100.0 5E-29 1.1E-33 218.8 15.1 138 35-188 2-139 (213)
8 PRK06271 V-type ATP synthase s 100.0 1.6E-28 3.5E-33 215.5 16.6 142 30-185 69-210 (213)
9 TIGR01100 V_ATP_synt_C vacuola 99.9 1E-23 2.2E-28 168.1 7.4 107 32-147 1-107 (108)
10 KOG0232|consensus 99.9 2.6E-22 5.6E-27 168.0 9.1 151 27-186 4-154 (156)
11 COG0636 AtpE F0F1-type ATP syn 99.6 9.3E-16 2E-20 116.2 9.7 70 118-187 6-79 (79)
12 PF00137 ATP-synt_C: ATP synth 99.6 1.9E-15 4.2E-20 110.2 9.9 66 120-185 1-66 (66)
13 PRK06251 V-type ATP synthase s 99.6 3.3E-15 7.2E-20 118.2 9.9 74 114-187 29-102 (102)
14 CHL00061 atpH ATP synthase CF0 99.6 4.6E-15 9.9E-20 113.1 9.9 73 116-188 4-80 (81)
15 PRK07354 F0F1 ATP synthase sub 99.6 7.3E-15 1.6E-19 111.9 10.1 73 116-188 4-80 (81)
16 PRK13468 F0F1 ATP synthase sub 99.6 1.4E-14 3E-19 110.6 9.9 74 115-188 3-80 (82)
17 TIGR03322 alt_F1F0_F0_C altern 99.6 1.3E-14 2.9E-19 111.7 9.2 76 114-189 3-82 (86)
18 PRK06876 F0F1 ATP synthase sub 99.6 2.1E-14 4.7E-19 108.7 10.0 72 116-187 3-78 (78)
19 PF00137 ATP-synt_C: ATP synth 99.5 9.3E-15 2E-19 106.5 6.2 66 33-98 1-66 (66)
20 PRK13469 F0F1 ATP synthase sub 99.5 8.3E-14 1.8E-18 105.6 9.8 70 116-186 6-79 (79)
21 PRK08482 F0F1 ATP synthase sub 99.5 1.1E-13 2.4E-18 110.1 10.0 74 115-188 26-103 (105)
22 PRK13471 F0F1 ATP synthase sub 99.5 1.5E-13 3.3E-18 105.6 9.9 71 115-185 10-84 (85)
23 PRK13464 F0F1 ATP synthase sub 99.4 6.4E-13 1.4E-17 105.0 9.3 73 118-190 12-88 (101)
24 PRK07558 F0F1 ATP synthase sub 99.4 1.2E-12 2.5E-17 98.4 9.3 66 118-184 4-73 (74)
25 COG0636 AtpE F0F1-type ATP syn 99.4 4E-13 8.7E-18 101.8 6.4 68 32-99 7-78 (79)
26 PRK06558 V-type ATP synthase s 99.4 1.5E-12 3.3E-17 110.2 9.3 71 117-187 13-83 (159)
27 PRK14893 V-type ATP synthase s 99.4 2E-12 4.3E-17 109.8 9.9 77 114-190 4-80 (161)
28 PRK13471 F0F1 ATP synthase sub 99.4 9.3E-13 2E-17 101.3 7.0 67 32-98 14-84 (85)
29 PRK05880 F0F1 ATP synthase sub 99.4 3.7E-12 8.1E-17 97.2 10.2 72 117-188 5-80 (81)
30 MTH00222 ATP9 ATP synthase F0 99.4 4.3E-12 9.3E-17 96.0 9.5 69 116-185 4-76 (77)
31 PRK06251 V-type ATP synthase s 99.4 1E-12 2.2E-17 104.2 6.1 67 32-98 34-100 (102)
32 CHL00061 atpH ATP synthase CF0 99.4 1.6E-12 3.4E-17 99.2 6.5 67 32-98 7-77 (81)
33 PRK07159 F0F1 ATP synthase sub 99.3 5.9E-12 1.3E-16 99.5 9.0 67 118-185 29-99 (100)
34 PRK08344 V-type ATP synthase s 99.3 4.8E-12 1E-16 107.0 9.0 66 120-185 2-67 (157)
35 PRK13469 F0F1 ATP synthase sub 99.3 2.3E-12 5E-17 97.7 6.3 66 32-98 9-78 (79)
36 PRK06876 F0F1 ATP synthase sub 99.3 4.5E-12 9.7E-17 96.1 6.3 67 32-98 6-76 (78)
37 PRK07354 F0F1 ATP synthase sub 99.3 6E-12 1.3E-16 95.9 6.4 66 33-98 8-77 (81)
38 PRK09621 V-type ATP synthase s 99.3 1.4E-11 3E-16 102.6 9.0 69 120-188 4-72 (141)
39 PRK13466 F0F1 ATP synthase sub 99.3 1.8E-11 3.9E-16 90.2 8.0 57 126-182 5-65 (66)
40 TIGR01100 V_ATP_synt_C vacuola 99.3 1.5E-11 3.2E-16 98.5 7.4 82 120-203 2-83 (108)
41 PRK07558 F0F1 ATP synthase sub 99.3 1.3E-11 2.8E-16 92.8 6.5 66 31-97 4-73 (74)
42 PRK13467 F0F1 ATP synthase sub 99.3 2.6E-11 5.6E-16 89.3 7.8 56 127-182 6-65 (66)
43 PRK13468 F0F1 ATP synthase sub 99.2 2.9E-11 6.4E-16 92.4 6.5 67 32-98 7-77 (82)
44 TIGR03322 alt_F1F0_F0_C altern 99.2 3.1E-11 6.8E-16 93.1 6.4 68 32-99 8-79 (86)
45 TIGR01260 ATP_synt_c ATP synth 99.2 5E-11 1.1E-15 85.7 6.7 53 132-184 1-57 (58)
46 PRK08482 F0F1 ATP synthase sub 99.2 4.6E-11 1E-15 95.2 6.6 68 32-99 30-101 (105)
47 PRK07874 F0F1 ATP synthase sub 99.2 1.2E-10 2.6E-15 88.8 8.1 63 115-181 13-79 (80)
48 PRK07159 F0F1 ATP synthase sub 99.2 4.6E-11 1E-15 94.4 6.0 65 33-98 31-99 (100)
49 MTH00222 ATP9 ATP synthase F0 99.1 1.1E-10 2.4E-15 88.3 6.2 66 32-98 7-76 (77)
50 PRK13464 F0F1 ATP synthase sub 99.1 1.5E-10 3.4E-15 91.5 6.6 68 32-99 13-84 (101)
51 PRK05880 F0F1 ATP synthase sub 99.1 3.4E-10 7.4E-15 86.4 6.7 67 32-98 7-77 (81)
52 PRK13467 F0F1 ATP synthase sub 99.0 3.7E-10 7.9E-15 83.3 5.2 56 40-95 6-65 (66)
53 PRK13466 F0F1 ATP synthase sub 99.0 3.3E-10 7.2E-15 83.5 4.9 57 39-95 5-65 (66)
54 TIGR01260 ATP_synt_c ATP synth 99.0 5.6E-10 1.2E-14 80.3 4.0 53 45-97 1-57 (58)
55 PRK07874 F0F1 ATP synthase sub 98.9 2.2E-09 4.9E-14 81.8 6.3 56 39-94 20-79 (80)
56 PRK06649 V-type ATP synthase s 98.8 5.5E-09 1.2E-13 87.4 6.0 65 32-96 78-142 (143)
57 KOG0233|consensus 98.7 1.6E-09 3.4E-14 93.3 -2.6 87 119-205 41-131 (196)
58 KOG0232|consensus 98.3 6.1E-07 1.3E-11 75.9 4.3 68 32-99 87-154 (156)
59 KOG3025|consensus 97.8 7.6E-05 1.6E-09 61.0 6.6 71 114-185 62-136 (137)
60 KOG3025|consensus 97.0 0.0011 2.4E-08 54.3 4.5 65 32-97 67-135 (137)
No 1
>PRK06558 V-type ATP synthase subunit K; Validated
Probab=100.00 E-value=9.8e-36 Score=251.01 Aligned_cols=156 Identities=23% Similarity=0.378 Sum_probs=146.3
Q ss_pred HhhHhhhcChHHHHHHHHHHHHHhhhhhchhhhHhhhhhhhccccccccccchhhHHHHHHHHHHHHHHHHHHHHHhhcc
Q psy15658 21 IGWFLQTTTPYMWATLGIALSVALSVVGAALGIHTVGVSIIGGGVKAPRIKTKNLISVIFCEAVAIYGLITAIVLSGQLE 100 (235)
Q Consensus 21 ~~~~~~~~~p~~l~~lGagLa~gLsaIGsa~Gig~ag~aa~ga~~~~Pe~~~k~lI~~af~ea~~IYGlIiafli~~ki~ 100 (235)
+.+++.+++|.+++++|++++++++++||++|+++++.+++++.+||||.++|.+++.+|||+++|||+|+++++..+++
T Consensus 4 ~~~~~~~~~~~~~~~lGa~laigla~iGsa~G~g~ag~a~~~~~a~~Pe~~~k~lI~~~l~e~~aIyGlvva~li~~~i~ 83 (159)
T PRK06558 4 LANFFTQNGGAFFAALGAALAVGLSGIGSAKGVGKAGEAAAGLLTEEPEKFGKALILQLLPGTQGLYGFVIGFLIWQKIT 83 (159)
T ss_pred HHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc
Confidence 45567777888999999999999999999999999999999999999999999999999999999999999999999874
Q ss_pred ccccccchhhhhhccHHHHHHHHHhHHHHHHHhhHhHHHHHHHHHHHHHHhhhCchhhHHHHHHHHHHHHHHHHHHHHHH
Q psy15658 101 QYNEKSTDQAVISQNIFGGYLMFGAGLSVGLVNLFCGMAVGIVGSGAALADAANSNLFVKILIVEIFGSAIGLFGLIVGI 180 (235)
Q Consensus 101 ~~~~~~~~~~~~~~s~~~g~~~lgagLavGla~lgsgig~G~~gaaa~~a~A~~Pelf~k~lI~~a~~EaiaIyGLVva~ 180 (235)
. .+++.+++.++++||++|+++++||++||+++++++++++||||.|+|+++..+|+|+++|||||+++
T Consensus 84 ~-----------~~~~~~g~~~l~agL~vGl~~l~sgi~~G~~~a~~~~a~a~~pe~~~~~li~~~~~E~~aI~glvvai 152 (159)
T PRK06558 84 P-----------ELSLAQGLAYFAACLPIAIVGLFSAISQGKVAAAGIQILAKRPEEFTKGIILAAMVETYAILAFVVSF 152 (159)
T ss_pred c-----------cccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3 35678999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhccc
Q psy15658 181 YMTSKVK 187 (235)
Q Consensus 181 ll~~~~~ 187 (235)
+++++.+
T Consensus 153 ll~~~~~ 159 (159)
T PRK06558 153 LLLNGVK 159 (159)
T ss_pred HHhccCC
Confidence 9887643
No 2
>KOG0233|consensus
Probab=100.00 E-value=1.3e-35 Score=252.29 Aligned_cols=183 Identities=70% Similarity=1.121 Sum_probs=173.1
Q ss_pred chhhhhhhhhcCCcccccHhhHhhhcChHHHHHHHHHHHHHhhhhhchhhhHhhhhhhhccccccccccchhhHHHHHHH
Q psy15658 3 ETGVSLFYTLSGQGEKLSIGWFLQTTTPYMWATLGIALSVALSVVGAALGIHTVGVSIIGGGVKAPRIKTKNLISVIFCE 82 (235)
Q Consensus 3 ~~~v~~~~~~~g~~~~~~~~~~~~~~~p~~l~~lGagLa~gLsaIGsa~Gig~ag~aa~ga~~~~Pe~~~k~lI~~af~e 82 (235)
-..+.+|+++.|.+++++++||+.+.+|+.|+.+|++++++|+.+|++||+-+.|++..++..|.||+.+|+++.++|||
T Consensus 12 ~~~~gl~~l~~g~g~~~~~g~fl~~tsp~~wa~lGI~l~ialSv~GaawGi~~tGssiiGggVkAPRI~TKnLisIIfCE 91 (196)
T KOG0233|consen 12 AIIKGLFFLVAGYGERFDLGWFLLRTSPYMWASLGIALCIALSVLGAAWGIYITGSSIIGGGVKAPRIKTKNLISIIFCE 91 (196)
T ss_pred HHHHHHHHHHhCccccceeeeeeccCChhHHHHhhHHHhhhhhhhhhheeEEEecceeecCcccCCcccccceEEEEeeh
Confidence 45678999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhhccccccccchhhhhhccHHHHHHHHHhHHHHHHHhhHhHHHHHHHHHHHHHHhhhCchhhHHHH
Q psy15658 83 AVAIYGLITAIVLSGQLEQYNEKSTDQAVISQNIFGGYLMFGAGLSVGLVNLFCGMAVGIVGSGAALADAANSNLFVKIL 162 (235)
Q Consensus 83 a~~IYGlIiafli~~ki~~~~~~~~~~~~~~~s~~~g~~~lgagLavGla~lgsgig~G~~gaaa~~a~A~~Pelf~k~l 162 (235)
+++|||+|+++++..|+++++ ++..+...++..|+..|++|+.+|++++.||++.|++|+++..++|+||.+|.|.+
T Consensus 92 avaiyglI~Aivls~kl~~~~---~~~~y~~~n~~~gy~lF~aGl~vG~~nl~cglavGIigs~aalaDA~n~tLFvKil 168 (196)
T KOG0233|consen 92 AVAIYGLIMAIVLSTKLENVS---SSKAYGAQNLYTGYALFGAGLIVGLCNLVCGLAVGIIGSGAALADAANPTLFVKIL 168 (196)
T ss_pred HHHHHHHHHHHHHHhhhccCC---chhhhccchhhhhHHHhhhhHHHHHHHHHhhhhhhhhchhhhhhcccCccceeeee
Confidence 999999999999999998765 23456678899999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhcccc
Q psy15658 163 IVEIFGSAIGLFGLIVGIYMTSKVKM 188 (235)
Q Consensus 163 I~~a~~EaiaIyGLVva~ll~~~~~~ 188 (235)
+.++|+.+++|||+|+++++..|..+
T Consensus 169 ivEIfgSaiGLfGlIvgi~ms~KA~~ 194 (196)
T KOG0233|consen 169 IVEIFGSAIGLFGLIVGIVMSSKASM 194 (196)
T ss_pred hhhhHHHHHHHHHHHHHhhccccccc
Confidence 99999999999999999999877554
No 3
>PRK09621 V-type ATP synthase subunit K; Provisional
Probab=100.00 E-value=2.7e-32 Score=226.26 Aligned_cols=137 Identities=21% Similarity=0.314 Sum_probs=130.0
Q ss_pred HHHHHHHHHHHhhhhhchhhhHhhhhhhhccccccccccchhhHHHHHHHHHHHHHHHHHHHHHhhccccccccchhhhh
Q psy15658 33 WATLGIALSVALSVVGAALGIHTVGVSIIGGGVKAPRIKTKNLISVIFCEAVAIYGLITAIVLSGQLEQYNEKSTDQAVI 112 (235)
Q Consensus 33 l~~lGagLa~gLsaIGsa~Gig~ag~aa~ga~~~~Pe~~~k~lI~~af~ea~~IYGlIiafli~~ki~~~~~~~~~~~~~ 112 (235)
+.++|++++++++++||+||++++|+++++++.|+||.++|.++..++||+|+|||+|+++++..+++.
T Consensus 4 ~~~~G~a~a~~ls~iGsa~G~~~aG~a~~G~~~e~p~~~~~~~i~~~lP~tq~IYG~ii~~li~~~~~~----------- 72 (141)
T PRK09621 4 MSVVGPALAMGLAMIGSAIGCGMAGVASHAVMSRIDEGHGKIIGLSAMPSSQSIYGLILMLLLNDAIKD----------- 72 (141)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCchhhhhHHHHHHhHHHHHHHHHHHHHHHHHHccc-----------
Confidence 578999999999999999999999999999999999999999999999999999999999999988743
Q ss_pred hccHHHHHHHHHhHHHHHHHhhHhHHHHHHHHHHHHHHhhhCchhhHHHHHHHHHHHHHHHHHHHHHHHH
Q psy15658 113 SQNIFGGYLMFGAGLSVGLVNLFCGMAVGIVGSGAALADAANSNLFVKILIVEIFGSAIGLFGLIVGIYM 182 (235)
Q Consensus 113 ~~s~~~g~~~lgagLavGla~lgsgig~G~~gaaa~~a~A~~Pelf~k~lI~~a~~EaiaIyGLVva~ll 182 (235)
+...++..+++||++|+++++||++||+++++++++++||||.|+|+++..+++|+++||+||+++++
T Consensus 73 --~~~~~~~~l~aGL~vGla~l~sgigqG~v~a~~i~a~arqPe~~~k~~i~~alvE~~ai~~lv~a~ll 140 (141)
T PRK09621 73 --GKLSALSGIAIGISVGIALLLSAIMQGKCCASAIQAYARSSEIYGKSFAAIGIVESFALFAFVFALLL 140 (141)
T ss_pred --chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 13478899999999999999999999999999999999999999999999999999999999999986
No 4
>PRK08344 V-type ATP synthase subunit K; Validated
Probab=100.00 E-value=4.4e-32 Score=228.43 Aligned_cols=152 Identities=24% Similarity=0.342 Sum_probs=133.3
Q ss_pred HHHHHHHHHHHhhhhhchhhhHhhhhhhhccccccccccchhhHHHHHHHHHHHHHHHHHHHHHhhccccccccchhhhh
Q psy15658 33 WATLGIALSVALSVVGAALGIHTVGVSIIGGGVKAPRIKTKNLISVIFCEAVAIYGLITAIVLSGQLEQYNEKSTDQAVI 112 (235)
Q Consensus 33 l~~lGagLa~gLsaIGsa~Gig~ag~aa~ga~~~~Pe~~~k~lI~~af~ea~~IYGlIiafli~~ki~~~~~~~~~~~~~ 112 (235)
|+++|++++++++++|++||++++|++++++++||||+++|++++.++||+|+|||+|++|++..+.+.....-..+..+
T Consensus 2 ~~~lG~~la~gls~iGsa~G~g~ag~aa~g~~~~~P~~~~~~li~~a~~~t~~IYGlvi~~~i~~~~~~~~~~~~~~~~~ 81 (157)
T PRK08344 2 YVALGAALAAGLAGAASSFGVGIAGSAAAGAVAEDEKNFRNALILAGLPMTQTIYGLITLFLILMYAGILGGGFKFAEPD 81 (157)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhccccccccccccc
Confidence 67899999999999999999999999999999999999999999999999999999999987754432210000000012
Q ss_pred hccHHHHHHHHHhHHHHHHHhhHhHHHHHHHHHHHHHHhhhCc-hhhHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy15658 113 SQNIFGGYLMFGAGLSVGLVNLFCGMAVGIVGSGAALADAANS-NLFVKILIVEIFGSAIGLFGLIVGIYMTS 184 (235)
Q Consensus 113 ~~s~~~g~~~lgagLavGla~lgsgig~G~~gaaa~~a~A~~P-elf~k~lI~~a~~EaiaIyGLVva~ll~~ 184 (235)
+.++.+++.++++||++|+++++||++||+++++++++++||| |+|+|+++..+|+|+++||+|+++++++.
T Consensus 82 ~~~l~~g~~~i~aGL~vGla~l~sgig~G~v~a~~i~~~ar~P~~l~~~~ii~~a~~Ea~ai~~lvvallll~ 154 (157)
T PRK08344 82 TINLGKALALLGAGLLVGLAELLSAIPQGIICASGIGALPRTPGKTFTQTIILAAYAELMGIFGLVFAILGLS 154 (157)
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4667899999999999999999999999999999999999999 99999999999999999999999998764
No 5
>PRK14893 V-type ATP synthase subunit K; Provisional
Probab=99.97 E-value=1.6e-30 Score=219.85 Aligned_cols=148 Identities=21% Similarity=0.374 Sum_probs=137.1
Q ss_pred HHHHHHHHHHHHhhhhhchhhhHhhhhhhhccccccccccchhhHHHHHHHHHHHHHHHHHHHHHhhccccccccchhhh
Q psy15658 32 MWATLGIALSVALSVVGAALGIHTVGVSIIGGGVKAPRIKTKNLISVIFCEAVAIYGLITAIVLSGQLEQYNEKSTDQAV 111 (235)
Q Consensus 32 ~l~~lGagLa~gLsaIGsa~Gig~ag~aa~ga~~~~Pe~~~k~lI~~af~ea~~IYGlIiafli~~ki~~~~~~~~~~~~ 111 (235)
.+.++|++++++++++|+++|+++++.++++++.||||.++++++..+++|+++|||+|+++++..+.+..+. .
T Consensus 9 ~~~~lGagla~gla~iGa~iG~g~~~~~~~~~iar~Pe~~~~~li~~al~Ea~aIyglvia~lll~~~~~~~~------~ 82 (161)
T PRK14893 9 ALAAIGAGVAVGFAGLGSGLGQGIAAAGSVGAVAEDSDMFARGIIFSALPETQAIYGFLIAILLLVFSGLLGG------G 82 (161)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccCC------c
Confidence 7789999999999999999999999999999999999999999999999999999999999999886543210 1
Q ss_pred hhccHHHHHHHHHhHHHHHHHhhHhHHHHHHHHHHHHHHhhhCchhhHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q psy15658 112 ISQNIFGGYLMFGAGLSVGLVNLFCGMAVGIVGSGAALADAANSNLFVKILIVEIFGSAIGLFGLIVGIYMTSK 185 (235)
Q Consensus 112 ~~~s~~~g~~~lgagLavGla~lgsgig~G~~gaaa~~a~A~~Pelf~k~lI~~a~~EaiaIyGLVva~ll~~~ 185 (235)
+..++.+++.++++||++|+++++||++||+++++++++++||||.|.|+++..+++|+++||||++++++++.
T Consensus 83 ~~~~~~~~~~~lgagL~~Gla~~gsgig~G~~~~a~i~~iar~Pe~~~~~li~~al~Et~~Iyglvv~~lll~~ 156 (161)
T PRK14893 83 EGLSVTAGLVAIGAGAAIGFAGLGSGMGQGIASASSVGAVVEDPDMFARGIIFSALPETQAIYGFLIAILLMVF 156 (161)
T ss_pred ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 24677899999999999999999999999999999999999999999999999999999999999999998754
No 6
>PRK06649 V-type ATP synthase subunit K; Validated
Probab=99.97 E-value=2.6e-30 Score=214.56 Aligned_cols=134 Identities=26% Similarity=0.343 Sum_probs=127.9
Q ss_pred HHHHHHHHHHHhhhhhchhhhHhhhhhhhccccc-----cccccchhhHHHHHHHHHHHHHHHHHHHHHhhccccccccc
Q psy15658 33 WATLGIALSVALSVVGAALGIHTVGVSIIGGGVK-----APRIKTKNLISVIFCEAVAIYGLITAIVLSGQLEQYNEKST 107 (235)
Q Consensus 33 l~~lGagLa~gLsaIGsa~Gig~ag~aa~ga~~~-----~Pe~~~k~lI~~af~ea~~IYGlIiafli~~ki~~~~~~~~ 107 (235)
++++|++++++++++||++|++++|+++.+++.| +||.+. .++.+.+|.||+|||||+++++...
T Consensus 3 ~g~lG~a~a~~la~iGSA~G~g~aG~Aa~Gv~~~~~~~~~p~~f~-~lvl~~lP~TqgiYG~vi~~~i~~~--------- 72 (143)
T PRK06649 3 IGLIGAAAALGISAIGSALGMGAAGMAAIGAWKRCYMQGKPAPFL-LIVFVGAPLTQTIYGYILMNTLLGV--------- 72 (143)
T ss_pred hHHHHHHHHHHHHHHHHHHhHHHHHHHHHhHccHhhhcCCchHHH-HHHHHhchhHHHHHHHHHHHHHHhh---------
Confidence 6899999999999999999999999999999999 999998 9999999999999999999999862
Q ss_pred hhhhhhccHHHHHHHHHhHHHHHHHhhHhHHHHHHHHHHHHHHhhhCchhhHHHHHHHHHHHHHHHHHHHHHHHH
Q psy15658 108 DQAVISQNIFGGYLMFGAGLSVGLVNLFCGMAVGIVGSGAALADAANSNLFVKILIVEIFGSAIGLFGLIVGIYM 182 (235)
Q Consensus 108 ~~~~~~~s~~~g~~~lgagLavGla~lgsgig~G~~gaaa~~a~A~~Pelf~k~lI~~a~~EaiaIyGLVva~ll 182 (235)
.++.++|.++++||++|++++.||+.||+++++++++++||||.|+|+++..+|+|+++||+||+++++
T Consensus 73 ------~s~~~g~~~l~aGL~vGl~gl~Sa~~qG~v~aagi~~~ak~p~~f~~~ii~~~~~Et~Al~~lv~s~~~ 141 (143)
T PRK06649 73 ------MSQTNPWLLLGAGIGGGLAIAASAFAQGKAAAGACDALAETGKGFANYLLVLGLIETVALFVMVFLMIF 141 (143)
T ss_pred ------hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 346789999999999999999999999999999999999999999999999999999999999999876
No 7
>PRK06271 V-type ATP synthase subunit K; Validated
Probab=99.96 E-value=5e-29 Score=218.82 Aligned_cols=138 Identities=24% Similarity=0.412 Sum_probs=130.0
Q ss_pred HHHHHHHHHhhhhhchhhhHhhhhhhhccccccccccchhhHHHHHHHHHHHHHHHHHHHHHhhccccccccchhhhhhc
Q psy15658 35 TLGIALSVALSVVGAALGIHTVGVSIIGGGVKAPRIKTKNLISVIFCEAVAIYGLITAIVLSGQLEQYNEKSTDQAVISQ 114 (235)
Q Consensus 35 ~lGagLa~gLsaIGsa~Gig~ag~aa~ga~~~~Pe~~~k~lI~~af~ea~~IYGlIiafli~~ki~~~~~~~~~~~~~~~ 114 (235)
.+|++++++++++|+++|+++++.+++++++||||.++|++++.+++|+++|||+++++++..+.+.
T Consensus 2 ~igagla~glaa~Ga~~G~g~~g~a~~~~~ar~Pe~~~~~li~~al~e~~~Iyglvia~ll~~~~~~------------- 68 (213)
T PRK06271 2 AIGAGLAVGIAGLGSGIGAGITGASGAGVVAEDPNKFGTAIVFQALPQTQGLYGFLVAILILFVFKT------------- 68 (213)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccc-------------
Confidence 5799999999999999999999999999999999999999999999999999999999999987532
Q ss_pred cHHHHHHHHHhHHHHHHHhhHhHHHHHHHHHHHHHHhhhCchhhHHHHHHHHHHHHHHHHHHHHHHHHHhcccc
Q psy15658 115 NIFGGYLMFGAGLSVGLVNLFCGMAVGIVGSGAALADAANSNLFVKILIVEIFGSAIGLFGLIVGIYMTSKVKM 188 (235)
Q Consensus 115 s~~~g~~~lgagLavGla~lgsgig~G~~gaaa~~a~A~~Pelf~k~lI~~a~~EaiaIyGLVva~ll~~~~~~ 188 (235)
..+|.++++||++|++++ |+++||+++++++++++||||.|+|+++..+++|+++|||||++++++.+...
T Consensus 69 --~~g~~~lgagL~vGla~~-sa~g~G~~g~a~~~a~a~~p~~f~~~li~~~~~E~~aiyGlIva~ll~~~~~~ 139 (213)
T PRK06271 69 --APEWAMLAAGLAVGLAGL-SAIGQGIAASAGLGAVAEDDSIFGKAMVFSVLPETQAIYGLLVAILLLVGVFA 139 (213)
T ss_pred --HhHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccC
Confidence 268999999999999999 88999999999999999999999999999999999999999999999876543
No 8
>PRK06271 V-type ATP synthase subunit K; Validated
Probab=99.96 E-value=1.6e-28 Score=215.55 Aligned_cols=142 Identities=28% Similarity=0.425 Sum_probs=132.8
Q ss_pred hHHHHHHHHHHHHHhhhhhchhhhHhhhhhhhccccccccccchhhHHHHHHHHHHHHHHHHHHHHHhhccccccccchh
Q psy15658 30 PYMWATLGIALSVALSVVGAALGIHTVGVSIIGGGVKAPRIKTKNLISVIFCEAVAIYGLITAIVLSGQLEQYNEKSTDQ 109 (235)
Q Consensus 30 p~~l~~lGagLa~gLsaIGsa~Gig~ag~aa~ga~~~~Pe~~~k~lI~~af~ea~~IYGlIiafli~~ki~~~~~~~~~~ 109 (235)
|..|.++|++++++++++ |++|+++++++++++.+||||.++|+++..+|||+++|||+|+++++..++...
T Consensus 69 ~~g~~~lgagL~vGla~~-sa~g~G~~g~a~~~a~a~~p~~f~~~li~~~~~E~~aiyGlIva~ll~~~~~~~------- 140 (213)
T PRK06271 69 APEWAMLAAGLAVGLAGL-SAIGQGIAASAGLGAVAEDDSIFGKAMVFSVLPETQAIYGLLVAILLLVGVFAS------- 140 (213)
T ss_pred HhHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCc-------
Confidence 568899999999999999 789999999999999999999999999999999999999999999999886431
Q ss_pred hhhhccHHHHHHHHHhHHHHHHHhhHhHHHHHHHHHHHHHHhhhCchhhHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q psy15658 110 AVISQNIFGGYLMFGAGLSVGLVNLFCGMAVGIVGSGAALADAANSNLFVKILIVEIFGSAIGLFGLIVGIYMTSK 185 (235)
Q Consensus 110 ~~~~~s~~~g~~~lgagLavGla~lgsgig~G~~gaaa~~a~A~~Pelf~k~lI~~a~~EaiaIyGLVva~ll~~~ 185 (235)
+..+++.++++||++|++++ ||++||+++++++++++||||.+.|.++..+++|+++||++++++++++.
T Consensus 141 -----~~~~g~~~~~aGl~~Gla~~-sgig~G~~~~~~~~~~arqPe~~~~~~i~~a~~Ea~~i~~lvvalil~f~ 210 (213)
T PRK06271 141 -----PGVETIAALGAGLAVGFAGL-SGIGQGITAAGAIGATARDPDAMGKGLVLAVMPETFAIFGLLIAILIMLG 210 (213)
T ss_pred -----chhhHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHhcCcHHhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 23468999999999999999 99999999999999999999999999999999999999999999998754
No 9
>TIGR01100 V_ATP_synt_C vacuolar ATP synthase 16 kDa proteolipid subunit. The principal role V-ATPases are the acidification of intracellular compartments of eukaryotic cells.
Probab=99.89 E-value=1e-23 Score=168.14 Aligned_cols=107 Identities=36% Similarity=0.724 Sum_probs=97.6
Q ss_pred HHHHHHHHHHHHhhhhhchhhhHhhhhhhhccccccccccchhhHHHHHHHHHHHHHHHHHHHHHhhccccccccchhhh
Q psy15658 32 MWATLGIALSVALSVVGAALGIHTVGVSIIGGGVKAPRIKTKNLISVIFCEAVAIYGLITAIVLSGQLEQYNEKSTDQAV 111 (235)
Q Consensus 32 ~l~~lGagLa~gLsaIGsa~Gig~ag~aa~ga~~~~Pe~~~k~lI~~af~ea~~IYGlIiafli~~ki~~~~~~~~~~~~ 111 (235)
+++++|++++++|+++||+||++++|.+.+++..++||+++|++++++|||+|+|||||++++++.|++..+
T Consensus 1 ~~~~lG~a~a~~ls~iGsA~G~~~aG~~~a~~gv~~P~~~~k~lI~vi~~g~~gIYGlIia~ii~~~i~~~~-------- 72 (108)
T TIGR01100 1 FFGVMGAAAALVFSALGAAYGTAKSGVGIAAMGVMRPELIMKSIIPVVMAGIIAIYGLVVAVLIAGSLKPKS-------- 72 (108)
T ss_pred ChhHHHHHHHHHHHHHHHHHHHHHhhhhhHHHhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCcc--------
Confidence 368999999999999999999999997777777788999999999999999999999999999999985421
Q ss_pred hhccHHHHHHHHHhHHHHHHHhhHhHHHHHHHHHHH
Q psy15658 112 ISQNIFGGYLMFGAGLSVGLVNLFCGMAVGIVGSGA 147 (235)
Q Consensus 112 ~~~s~~~g~~~lgagLavGla~lgsgig~G~~gaaa 147 (235)
.+++.+++.+|++||++|++++.||++||++++++
T Consensus 73 -~~s~~~g~~~~~aGL~vGl~~l~sgi~~Gi~G~~g 107 (108)
T TIGR01100 73 -NYSLYKGFIHLGAGLAVGLSGLAAGFAIGIVGDAG 107 (108)
T ss_pred -ccCHHHHHHHHHHHHHHHHHHHHHHhhccccccCC
Confidence 35788999999999999999999999999998764
No 10
>KOG0232|consensus
Probab=99.87 E-value=2.6e-22 Score=167.98 Aligned_cols=151 Identities=33% Similarity=0.655 Sum_probs=140.3
Q ss_pred hcChHHHHHHHHHHHHHhhhhhchhhhHhhhhhhhccccccccccchhhHHHHHHHHHHHHHHHHHHHHHhhcccccccc
Q psy15658 27 TTTPYMWATLGIALSVALSVVGAALGIHTVGVSIIGGGVKAPRIKTKNLISVIFCEAVAIYGLITAIVLSGQLEQYNEKS 106 (235)
Q Consensus 27 ~~~p~~l~~lGagLa~gLsaIGsa~Gig~ag~aa~ga~~~~Pe~~~k~lI~~af~ea~~IYGlIiafli~~ki~~~~~~~ 106 (235)
...| ++...|++.++.++++|+++|+.+.+...+....++||+.+|+++++++++..+|||++++.++..++++..
T Consensus 4 ~ya~-ff~~~g~~~a~v~s~lgaa~Gtak~g~GI~~~~v~rpelimkSiiPvVmAgii~iYglv~av~i~g~i~~~~--- 79 (156)
T KOG0232|consen 4 EYAP-FFGIMGAAAAMVFSALGAAYGTAKSGTGIAAMSVMRPELIMKSIIPVVMAGIITIYGLVVAVVISGDIGPKG--- 79 (156)
T ss_pred chhh-HHHHhhHHHHHHHHHHHHHHhhhhcchhhhhhhhcChHHHHHHHHHHHHHhHHHHHHHHHHHhcccccCCcc---
Confidence 3445 779999999999999999999999999999999999999999999999999999999999999999886532
Q ss_pred chhhhhhccHHHHHHHHHhHHHHHHHhhHhHHHHHHHHHHHHHHhhhCchhhHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q psy15658 107 TDQAVISQNIFGGYLMFGAGLSVGLVNLFCGMAVGIVGSGAALADAANSNLFVKILIVEIFGSAIGLFGLIVGIYMTSKV 186 (235)
Q Consensus 107 ~~~~~~~~s~~~g~~~lgagLavGla~lgsgig~G~~gaaa~~a~A~~Pelf~k~lI~~a~~EaiaIyGLVva~ll~~~~ 186 (235)
+.+++.+++..+++|+.+|++++.+|+++|+++.+++...+|||++|..+++..+|.|.+++|||++++.+..+.
T Consensus 80 -----~~~~l~~g~i~lsagl~vgl~~~~ag~aigi~gd~gvr~~~qQPr~fv~~iLiLif~evlGLygLiva~~l~~~~ 154 (156)
T KOG0232|consen 80 -----TAYSLFTGFIVLSAGLAVGLAGLSAGLAIGIVGDAGVRGRAQQPRLFVGMILILIFAEVLGLYGLIVALALLTVG 154 (156)
T ss_pred -----cccchhhHHHHHHHHHHhhhcccCCCcCcCccccccchhhhcCchhhhhHHHHHHHHHHHHHHHHHHHHhccCCC
Confidence 136789999999999999999999999999999999999999999999999999999999999999999987654
No 11
>COG0636 AtpE F0F1-type ATP synthase, subunit c/Archaeal/vacuolar-type H+-ATPase, subunit K [Energy production and conversion]
Probab=99.65 E-value=9.3e-16 Score=116.22 Aligned_cols=70 Identities=34% Similarity=0.580 Sum_probs=67.7
Q ss_pred HHHHHHHhHHHHHHHhhHhHHHHHHHHHHHHHHhhhCch----hhHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Q psy15658 118 GGYLMFGAGLSVGLVNLFCGMAVGIVGSGAALADAANSN----LFVKILIVEIFGSAIGLFGLIVGIYMTSKVK 187 (235)
Q Consensus 118 ~g~~~lgagLavGla~lgsgig~G~~gaaa~~a~A~~Pe----lf~k~lI~~a~~EaiaIyGLVva~ll~~~~~ 187 (235)
.++.++++||++|++++++|++||+++++++++++|||| +|+|+++..+++|+++||+||+++++.+++|
T Consensus 6 ~~~~~i~agl~vGla~lg~gig~G~~~~~~~~~~Ar~P~~~~~l~~~~~i~~~l~E~~~i~~lvialll~f~~~ 79 (79)
T COG0636 6 KGLALIGAGLAVGLAALGAGIGQGIIGAAAVEAVARQPEAAGKLFGKMFIGLALVEALGIYGLVIALLLLFANP 79 (79)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 789999999999999999999999999999999999999 9999999999999999999999999988764
No 12
>PF00137 ATP-synt_C: ATP synthase subunit C; InterPro: IPR002379 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. The F-ATPases (or F1F0-ATPases) and V-ATPases (or V1V0-ATPases) are each composed of two linked complexes: the F1 or V1 complex contains the catalytic core that synthesizes/hydrolyses ATP, and the F0 or V0 complex that forms the membrane-spanning pore. The F- and V-ATPases all contain rotary motors, one that drives proton translocation across the membrane and one that drives ATP synthesis/hydrolysis [, ]. This entry represents subunit C (also called subunit 9, or proteolipid in F-ATPases, or the 16 kDa proteolipid in V-ATPases) found in the F0 or V0 complex of F- and V-ATPases, respectively. In F-ATPases, ten C subunits form an oligomeric ring that makes up the F0 rotor. The flux of protons through the ATPase channel drives the rotation of the C subunit ring, which in turn is coupled to the rotation of the F1 complex gamma subunit rotor due to the permanent binding between the gamma and epsilon subunits of F1 and the C subunit ring of F0. The sequential protonation and deprotonation of Asp61 of subunit C is coupled to the stepwise movement of the rotor []. In V-ATPases, there are three proteolipid subunits (c, c' and c'') that form part of the proton-conducting pore, each containing a buried glutamic acid residue that is essential for proton transport, and together they form a hexameric ring spanning the membrane [, ]. Structurally, the c subunits consist of a two antiparallel transmembrane helices. Both helices of one c subunit are connected by a loop on the cytoplasmic side []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0015078 hydrogen ion transmembrane transporter activity, 0015991 ATP hydrolysis coupled proton transport, 0033177 proton-transporting two-sector ATPase complex, proton-transporting domain; PDB: 3AOU_D 2DB4_H 2BL2_C 2CYD_A 2XQT_A 2XQS_A 2XQU_E 1WU0_A 1ATY_A 1C17_A ....
Probab=99.64 E-value=1.9e-15 Score=110.16 Aligned_cols=66 Identities=39% Similarity=0.605 Sum_probs=63.7
Q ss_pred HHHHHhHHHHHHHhhHhHHHHHHHHHHHHHHhhhCchhhHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q psy15658 120 YLMFGAGLSVGLVNLFCGMAVGIVGSGAALADAANSNLFVKILIVEIFGSAIGLFGLIVGIYMTSK 185 (235)
Q Consensus 120 ~~~lgagLavGla~lgsgig~G~~gaaa~~a~A~~Pelf~k~lI~~a~~EaiaIyGLVva~ll~~~ 185 (235)
|.++++|+++|++++++|+++|+++++++++++||||+|+|+++..+++|+++||+|+++++++++
T Consensus 1 ~~~l~agl~~gl~~~gsa~g~g~~~~~~~~~~a~~p~~~~~~li~~~~~E~~~i~glv~~~~l~~~ 66 (66)
T PF00137_consen 1 LAYLGAGLAVGLAAIGSAIGQGIAGSAAIGAIARQPELFTKMLIGAAFIEALGIYGLVVALLLLFK 66 (66)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSGGHHHHHHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccchhhhhhHHHHHHHHHHHHHHHHHHHcC
Confidence 578999999999999999999999999999999999999999999999999999999999998764
No 13
>PRK06251 V-type ATP synthase subunit K; Validated
Probab=99.61 E-value=3.3e-15 Score=118.25 Aligned_cols=74 Identities=24% Similarity=0.377 Sum_probs=68.9
Q ss_pred ccHHHHHHHHHhHHHHHHHhhHhHHHHHHHHHHHHHHhhhCchhhHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Q psy15658 114 QNIFGGYLMFGAGLSVGLVNLFCGMAVGIVGSGAALADAANSNLFVKILIVEIFGSAIGLFGLIVGIYMTSKVK 187 (235)
Q Consensus 114 ~s~~~g~~~lgagLavGla~lgsgig~G~~gaaa~~a~A~~Pelf~k~lI~~a~~EaiaIyGLVva~ll~~~~~ 187 (235)
.+...+..++++|+++|+++++||++||+++++++++++||||.|+++++..+++|+++||||++++++++.+|
T Consensus 29 ~~~~~~~~~igaGLavGLaaigsgiG~G~~~aaai~aiAr~Pe~~g~~ii~~al~Ea~aIyglvVa~lLlf~~~ 102 (102)
T PRK06251 29 TAQGFAGINIGAGLAVGLAAIGAGIAVGMAAAAGIGVLTERRDMFGTVLIFVAIGEGIAVYGILFAVLMLFGKF 102 (102)
T ss_pred hhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccC
Confidence 34567778999999999999999999999999999999999999999999999999999999999999887653
No 14
>CHL00061 atpH ATP synthase CF0 C subunit
Probab=99.61 E-value=4.6e-15 Score=113.08 Aligned_cols=73 Identities=22% Similarity=0.334 Sum_probs=67.6
Q ss_pred HHHHHHHHHhHHHHHHHhhHhHHHHHHHHHHHHHHhhhCch----hhHHHHHHHHHHHHHHHHHHHHHHHHHhcccc
Q psy15658 116 IFGGYLMFGAGLSVGLVNLFCGMAVGIVGSGAALADAANSN----LFVKILIVEIFGSAIGLFGLIVGIYMTSKVKM 188 (235)
Q Consensus 116 ~~~g~~~lgagLavGla~lgsgig~G~~gaaa~~a~A~~Pe----lf~k~lI~~a~~EaiaIyGLVva~ll~~~~~~ 188 (235)
+..++..+++|+++|++++++|++||+++++++++++|||| +++++++..++.|+++||+|++++++++.+|+
T Consensus 4 ~~~~~~~i~agl~~Gla~lgagig~G~~~~~a~~aiarqPe~~~~l~~~~~i~~al~Ea~aiy~lvvalillf~~p~ 80 (81)
T CHL00061 4 LISAASVIAAGLAVGLASIGPGVGQGTAAGQAVEGIARQPEAEGKIRGTLLLSLAFMEALTIYGLVVALALLFANPF 80 (81)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCchHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 34567899999999999999999999999999999999997 56779999999999999999999999998875
No 15
>PRK07354 F0F1 ATP synthase subunit C; Validated
Probab=99.60 E-value=7.3e-15 Score=111.87 Aligned_cols=73 Identities=22% Similarity=0.297 Sum_probs=67.4
Q ss_pred HHHHHHHHHhHHHHHHHhhHhHHHHHHHHHHHHHHhhhCchh----hHHHHHHHHHHHHHHHHHHHHHHHHHhcccc
Q psy15658 116 IFGGYLMFGAGLSVGLVNLFCGMAVGIVGSGAALADAANSNL----FVKILIVEIFGSAIGLFGLIVGIYMTSKVKM 188 (235)
Q Consensus 116 ~~~g~~~lgagLavGla~lgsgig~G~~gaaa~~a~A~~Pel----f~k~lI~~a~~EaiaIyGLVva~ll~~~~~~ 188 (235)
+..++.++++|+++|++++++|++||+++++++++++||||. ++++++..+++|+++||+|++++++++.+|+
T Consensus 4 ~~~~~~~igagl~~Gla~lgagig~G~~~~~~~~~iArqPe~~~~~~~~~~i~~al~Ea~ai~~lvvallllf~~p~ 80 (81)
T PRK07354 4 ITSAASVVAAALAVGLAAIGPGIGQGNAAGGAVEGIARQPEAEGKIRGTLLLSLAFMESLTIYGLVVALVLLFANPF 80 (81)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcccC
Confidence 346678999999999999999999999999999999999985 6677999999999999999999999988774
No 16
>PRK13468 F0F1 ATP synthase subunit C; Provisional
Probab=99.58 E-value=1.4e-14 Score=110.64 Aligned_cols=74 Identities=14% Similarity=0.146 Sum_probs=67.7
Q ss_pred cHHHHHHHHHhHHHHHHHhhHhHHHHHHHHHHHHHHhhhCchh----hHHHHHHHHHHHHHHHHHHHHHHHHHhcccc
Q psy15658 115 NIFGGYLMFGAGLSVGLVNLFCGMAVGIVGSGAALADAANSNL----FVKILIVEIFGSAIGLFGLIVGIYMTSKVKM 188 (235)
Q Consensus 115 s~~~g~~~lgagLavGla~lgsgig~G~~gaaa~~a~A~~Pel----f~k~lI~~a~~EaiaIyGLVva~ll~~~~~~ 188 (235)
++..+..++++|+++|++++++|++||+++++++++++||||. ++++++..+++|+++||+|++++++++.+|+
T Consensus 3 ~~~~~~~~igaglaigla~lgagig~G~~~~~a~~~iaRqPe~~g~l~~~m~ig~al~E~~ai~alviallllfa~p~ 80 (82)
T PRK13468 3 TLIAVVSIIAAGLAVSIGAIGPALAEGRAVAAALDAIAQQPDAAGTISRTLFVGLAMIESMAIYCFVVAMILLFANPF 80 (82)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 3567789999999999999999999999999999999999985 4577788999999999999999999998876
No 17
>TIGR03322 alt_F1F0_F0_C alternate F1F0 ATPase, F0 subunit C. A small number of taxonomically diverse prokaryotic species, including Methanosarcina barkeri, have what appears to be a second ATP synthase, in addition to the normal F1F0 ATPase in bacteria and A1A0 ATPase in archaea. These enzymes use ion gradients to synthesize ATP, and in principle may run in either direction. This model represents the F0 subunit C of this apparent second ATP synthase.
Probab=99.57 E-value=1.3e-14 Score=111.68 Aligned_cols=76 Identities=12% Similarity=0.101 Sum_probs=69.7
Q ss_pred ccHHHHHHHHHhHHHHHHHhhHhHHHHHHHHHHHHHHhhhCchh----hHHHHHHHHHHHHHHHHHHHHHHHHHhccccc
Q psy15658 114 QNIFGGYLMFGAGLSVGLVNLFCGMAVGIVGSGAALADAANSNL----FVKILIVEIFGSAIGLFGLIVGIYMTSKVKMG 189 (235)
Q Consensus 114 ~s~~~g~~~lgagLavGla~lgsgig~G~~gaaa~~a~A~~Pel----f~k~lI~~a~~EaiaIyGLVva~ll~~~~~~~ 189 (235)
.++..++..+++|+++|++++++|++||+++++++++++||||. ++++++..+++|+++||++++++++++.+|+.
T Consensus 3 ~~~~~~~~~igagl~~gla~igagiG~G~~~~~a~e~iaRqPe~~~~i~~~m~ig~AlvEa~ai~alvia~lllf~~p~~ 82 (86)
T TIGR03322 3 LTIIAVASIVTAGLTIAIGSIGPALGEGRAVAQALTALAQQPDASNTITRTLFVGLAMIESTAIYCFVVSMILIFANPFW 82 (86)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34567889999999999999999999999999999999999985 67888889999999999999999999988763
No 18
>PRK06876 F0F1 ATP synthase subunit C; Validated
Probab=99.57 E-value=2.1e-14 Score=108.73 Aligned_cols=72 Identities=19% Similarity=0.303 Sum_probs=66.6
Q ss_pred HHHHHHHHHhHHHHHHHhhHhHHHHHHHHHHHHHHhhhCch----hhHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Q psy15658 116 IFGGYLMFGAGLSVGLVNLFCGMAVGIVGSGAALADAANSN----LFVKILIVEIFGSAIGLFGLIVGIYMTSKVK 187 (235)
Q Consensus 116 ~~~g~~~lgagLavGla~lgsgig~G~~gaaa~~a~A~~Pe----lf~k~lI~~a~~EaiaIyGLVva~ll~~~~~ 187 (235)
+..+..++++|+++|++++++|+|||.++++++++++|||| +++++++..+++|+++||+|++++++++.+|
T Consensus 3 ~~~~~~~i~agla~glaaiGagiG~G~~~~~a~~~iaRqPe~~~~l~~~~~ig~Al~Ea~~i~~lvva~illf~~p 78 (78)
T PRK06876 3 LIMGLTAIAAAIAIGLAALGAAIGIGLLGGKFLEGAARQPELIPMLQTKMFIGAGLVDAIPIIGVGIALLFLFANP 78 (78)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcChHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 34567899999999999999999999999999999999997 5669999999999999999999999998765
No 19
>PF00137 ATP-synt_C: ATP synthase subunit C; InterPro: IPR002379 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. The F-ATPases (or F1F0-ATPases) and V-ATPases (or V1V0-ATPases) are each composed of two linked complexes: the F1 or V1 complex contains the catalytic core that synthesizes/hydrolyses ATP, and the F0 or V0 complex that forms the membrane-spanning pore. The F- and V-ATPases all contain rotary motors, one that drives proton translocation across the membrane and one that drives ATP synthesis/hydrolysis [, ]. This entry represents subunit C (also called subunit 9, or proteolipid in F-ATPases, or the 16 kDa proteolipid in V-ATPases) found in the F0 or V0 complex of F- and V-ATPases, respectively. In F-ATPases, ten C subunits form an oligomeric ring that makes up the F0 rotor. The flux of protons through the ATPase channel drives the rotation of the C subunit ring, which in turn is coupled to the rotation of the F1 complex gamma subunit rotor due to the permanent binding between the gamma and epsilon subunits of F1 and the C subunit ring of F0. The sequential protonation and deprotonation of Asp61 of subunit C is coupled to the stepwise movement of the rotor []. In V-ATPases, there are three proteolipid subunits (c, c' and c'') that form part of the proton-conducting pore, each containing a buried glutamic acid residue that is essential for proton transport, and together they form a hexameric ring spanning the membrane [, ]. Structurally, the c subunits consist of a two antiparallel transmembrane helices. Both helices of one c subunit are connected by a loop on the cytoplasmic side []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0015078 hydrogen ion transmembrane transporter activity, 0015991 ATP hydrolysis coupled proton transport, 0033177 proton-transporting two-sector ATPase complex, proton-transporting domain; PDB: 3AOU_D 2DB4_H 2BL2_C 2CYD_A 2XQT_A 2XQS_A 2XQU_E 1WU0_A 1ATY_A 1C17_A ....
Probab=99.55 E-value=9.3e-15 Score=106.54 Aligned_cols=66 Identities=39% Similarity=0.616 Sum_probs=63.7
Q ss_pred HHHHHHHHHHHhhhhhchhhhHhhhhhhhccccccccccchhhHHHHHHHHHHHHHHHHHHHHHhh
Q psy15658 33 WATLGIALSVALSVVGAALGIHTVGVSIIGGGVKAPRIKTKNLISVIFCEAVAIYGLITAIVLSGQ 98 (235)
Q Consensus 33 l~~lGagLa~gLsaIGsa~Gig~ag~aa~ga~~~~Pe~~~k~lI~~af~ea~~IYGlIiafli~~k 98 (235)
|+++|++++++++++|+++|+++++++++++.+||||+++|+++..+|+|+++|||++++++++++
T Consensus 1 ~~~l~agl~~gl~~~gsa~g~g~~~~~~~~~~a~~p~~~~~~li~~~~~E~~~i~glv~~~~l~~~ 66 (66)
T PF00137_consen 1 LAYLGAGLAVGLAAIGSAIGQGIAGSAAIGAIARQPELFTKMLIGAAFIEALGIYGLVVALLLLFK 66 (66)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSGGHHHHHHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccchhhhhhHHHHHHHHHHHHHHHHHHHcC
Confidence 578999999999999999999999999999999999999999999999999999999999998864
No 20
>PRK13469 F0F1 ATP synthase subunit C; Provisional
Probab=99.52 E-value=8.3e-14 Score=105.64 Aligned_cols=70 Identities=21% Similarity=0.402 Sum_probs=64.3
Q ss_pred HHHHHHHHHhHHHHHHHhhHhHHHHHHHHHHHHHHhhhCch----hhHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q psy15658 116 IFGGYLMFGAGLSVGLVNLFCGMAVGIVGSGAALADAANSN----LFVKILIVEIFGSAIGLFGLIVGIYMTSKV 186 (235)
Q Consensus 116 ~~~g~~~lgagLavGla~lgsgig~G~~gaaa~~a~A~~Pe----lf~k~lI~~a~~EaiaIyGLVva~ll~~~~ 186 (235)
+..++.++++|+++ ++++++|++||.++++++++++|||| +++++++..+++|+++||||++++++++.+
T Consensus 6 ~~~~~~~igagla~-laalGagig~G~~~~~a~~a~arqPe~~g~l~~~~~i~~al~Eal~i~glvva~illf~~ 79 (79)
T PRK13469 6 FVMGMSAIGAGIAA-LAGIGAGIGIGIATGKAVEAVGRQPEASGKIMSTMLLGAALAEATAIYGLVIAIILLFVN 79 (79)
T ss_pred HHHHHHHHHHHHHH-HHHHHHHHhHHHHHHHHHHHHHcCchHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 46788999999999 99999999999999999999999997 566678999999999999999999988753
No 21
>PRK08482 F0F1 ATP synthase subunit C; Validated
Probab=99.51 E-value=1.1e-13 Score=110.12 Aligned_cols=74 Identities=16% Similarity=0.327 Sum_probs=68.9
Q ss_pred cHHHHHHHHHhHHHHHHHhhHhHHHHHHHHHHHHHHhhhCch----hhHHHHHHHHHHHHHHHHHHHHHHHHHhcccc
Q psy15658 115 NIFGGYLMFGAGLSVGLVNLFCGMAVGIVGSGAALADAANSN----LFVKILIVEIFGSAIGLFGLIVGIYMTSKVKM 188 (235)
Q Consensus 115 s~~~g~~~lgagLavGla~lgsgig~G~~gaaa~~a~A~~Pe----lf~k~lI~~a~~EaiaIyGLVva~ll~~~~~~ 188 (235)
+...+..++++|+++|++++++|+|||.++++++++++|||| +++++++..+++|+++||++++++++++.+|+
T Consensus 26 ~~i~~~~~igagla~Glaa~GagiG~G~~~~~a~e~iaRqPe~~~~i~~~~~ig~Al~Ea~~i~alvia~illf~np~ 103 (105)
T PRK08482 26 DMIKSYSVLAAGIGLGIAALGGAIGMGNTAAATIAGTARNPGLGGKLMTTMFIALAMIEAQVIYALVIALIALYANPF 103 (105)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcChhHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 456778999999999999999999999999999999999997 56679999999999999999999999999886
No 22
>PRK13471 F0F1 ATP synthase subunit C; Provisional
Probab=99.50 E-value=1.5e-13 Score=105.62 Aligned_cols=71 Identities=20% Similarity=0.350 Sum_probs=65.4
Q ss_pred cHHHHHHHHHhHHHHHHHhhHhHHHHHHHHHHHHHHhhhCchhh----HHHHHHHHHHHHHHHHHHHHHHHHHhc
Q psy15658 115 NIFGGYLMFGAGLSVGLVNLFCGMAVGIVGSGAALADAANSNLF----VKILIVEIFGSAIGLFGLIVGIYMTSK 185 (235)
Q Consensus 115 s~~~g~~~lgagLavGla~lgsgig~G~~gaaa~~a~A~~Pelf----~k~lI~~a~~EaiaIyGLVva~ll~~~ 185 (235)
++..+..++++|+++|++++++|+++|.++++++++++||||.+ +++++..+++|+++||+|++++++++.
T Consensus 10 ~~~~~~~~igagla~glaaiGagiG~G~~~~~a~~avaRqPe~~g~l~~~~~ig~aL~Ea~~iy~lvva~lllf~ 84 (85)
T PRK13471 10 ALILLGKYIGAGLCMGIGAIGPGIGEGNIGAHAMDAMARQPEMVGTITTRMLLADAVAETTGIYSLLIAFLILLV 84 (85)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcChHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 45677899999999999999999999999999999999999855 488999999999999999999998764
No 23
>PRK13464 F0F1 ATP synthase subunit C; Provisional
Probab=99.44 E-value=6.4e-13 Score=105.02 Aligned_cols=73 Identities=18% Similarity=0.281 Sum_probs=69.3
Q ss_pred HHHHHHHhHHHHHHHhhHhHHHHHHHHHHHHHHhhhCch----hhHHHHHHHHHHHHHHHHHHHHHHHHHhccccch
Q psy15658 118 GGYLMFGAGLSVGLVNLFCGMAVGIVGSGAALADAANSN----LFVKILIVEIFGSAIGLFGLIVGIYMTSKVKMGN 190 (235)
Q Consensus 118 ~g~~~lgagLavGla~lgsgig~G~~gaaa~~a~A~~Pe----lf~k~lI~~a~~EaiaIyGLVva~ll~~~~~~~~ 190 (235)
.+...+++|+.+|++++++|+|+|.+.++++++++|||| +++++++..++.|+++||++++++++++++|+..
T Consensus 12 ~~~~~i~agl~iglaaiGagiGiG~v~~~ale~iARQPEa~~~l~t~m~IG~AliEa~ai~alvia~lllFa~P~~~ 88 (101)
T PRK13464 12 NGLTAVAVALLISLPALGTAIGFGVLGGKYLEGVARQPELGGMLLGRMFIVAAFVDAFAAISIAIGFLVLYANPLAI 88 (101)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcChhHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhH
Confidence 467889999999999999999999999999999999997 7899999999999999999999999999999876
No 24
>PRK07558 F0F1 ATP synthase subunit C; Validated
Probab=99.42 E-value=1.2e-12 Score=98.39 Aligned_cols=66 Identities=20% Similarity=0.311 Sum_probs=62.4
Q ss_pred HHHHHHHhHHHHHHHhhHhHHHHHHHHHHHHHHhhhCch----hhHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy15658 118 GGYLMFGAGLSVGLVNLFCGMAVGIVGSGAALADAANSN----LFVKILIVEIFGSAIGLFGLIVGIYMTS 184 (235)
Q Consensus 118 ~g~~~lgagLavGla~lgsgig~G~~gaaa~~a~A~~Pe----lf~k~lI~~a~~EaiaIyGLVva~ll~~ 184 (235)
.+...+++|+++ ++++++|+|+|.++++++++++|||| +++++++..++.|+++||++++++++++
T Consensus 4 ~~~~~igagla~-laa~GagiG~G~~~~~a~e~iaRqPe~~~~l~~~~~ig~Al~Ea~~i~alvva~lllf 73 (74)
T PRK07558 4 EALKFIGAGLAC-IGMAGAALGVGNIFGNYLSGALRNPSAADSQFGYLLIGAALAEALGIFSFLIALLLLF 73 (74)
T ss_pred hHHHHHHHHHHH-HHhhhHHHHHHHHHHHHHHHHHcCchHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 456789999999 99999999999999999999999998 8999999999999999999999999875
No 25
>COG0636 AtpE F0F1-type ATP synthase, subunit c/Archaeal/vacuolar-type H+-ATPase, subunit K [Energy production and conversion]
Probab=99.41 E-value=4e-13 Score=101.83 Aligned_cols=68 Identities=29% Similarity=0.490 Sum_probs=64.9
Q ss_pred HHHHHHHHHHHHhhhhhchhhhHhhhhhhhcccccccc----ccchhhHHHHHHHHHHHHHHHHHHHHHhhc
Q psy15658 32 MWATLGIALSVALSVVGAALGIHTVGVSIIGGGVKAPR----IKTKNLISVIFCEAVAIYGLITAIVLSGQL 99 (235)
Q Consensus 32 ~l~~lGagLa~gLsaIGsa~Gig~ag~aa~ga~~~~Pe----~~~k~lI~~af~ea~~IYGlIiafli~~ki 99 (235)
.+.++|++++++++++|+++|+|+++.+..++.+|||| +++|+++..+|+|+++||++++++++..+.
T Consensus 7 ~~~~i~agl~vGla~lg~gig~G~~~~~~~~~~Ar~P~~~~~l~~~~~i~~~l~E~~~i~~lvialll~f~~ 78 (79)
T COG0636 7 GLALIGAGLAVGLAALGAGIGQGIIGAAAVEAVARQPEAAGKLFGKMFIGLALVEALGIYGLVIALLLLFAN 78 (79)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 46889999999999999999999999999999999999 999999999999999999999999998764
No 26
>PRK06558 V-type ATP synthase subunit K; Validated
Probab=99.39 E-value=1.5e-12 Score=110.25 Aligned_cols=71 Identities=28% Similarity=0.449 Sum_probs=67.6
Q ss_pred HHHHHHHHhHHHHHHHhhHhHHHHHHHHHHHHHHhhhCchhhHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Q psy15658 117 FGGYLMFGAGLSVGLVNLFCGMAVGIVGSGAALADAANSNLFVKILIVEIFGSAIGLFGLIVGIYMTSKVK 187 (235)
Q Consensus 117 ~~g~~~lgagLavGla~lgsgig~G~~gaaa~~a~A~~Pelf~k~lI~~a~~EaiaIyGLVva~ll~~~~~ 187 (235)
...+.++++++++|+++++|+++||+++++++++.+||||.++|.++..+++|+++||||+++++++++.+
T Consensus 13 ~~~~~~lGa~laigla~iGsa~G~g~ag~a~~~~~a~~Pe~~~k~lI~~~l~e~~aIyGlvva~li~~~i~ 83 (159)
T PRK06558 13 GAFFAALGAALAVGLSGIGSAKGVGKAGEAAAGLLTEEPEKFGKALILQLLPGTQGLYGFVIGFLIWQKIT 83 (159)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc
Confidence 34689999999999999999999999999999999999999999999999999999999999999988763
No 27
>PRK14893 V-type ATP synthase subunit K; Provisional
Probab=99.39 E-value=2e-12 Score=109.79 Aligned_cols=77 Identities=22% Similarity=0.397 Sum_probs=71.5
Q ss_pred ccHHHHHHHHHhHHHHHHHhhHhHHHHHHHHHHHHHHhhhCchhhHHHHHHHHHHHHHHHHHHHHHHHHHhccccch
Q psy15658 114 QNIFGGYLMFGAGLSVGLVNLFCGMAVGIVGSGAALADAANSNLFVKILIVEIFGSAIGLFGLIVGIYMTSKVKMGN 190 (235)
Q Consensus 114 ~s~~~g~~~lgagLavGla~lgsgig~G~~gaaa~~a~A~~Pelf~k~lI~~a~~EaiaIyGLVva~ll~~~~~~~~ 190 (235)
.+...++..+++++++|++++++++++|+++++++++++||||.+.++++..+++|+++|||||++++++++++..+
T Consensus 4 ~~~~~~~~~lGagla~gla~iGa~iG~g~~~~~~~~~iar~Pe~~~~~li~~al~Ea~aIyglvia~lll~~~~~~~ 80 (161)
T PRK14893 4 IALGTALAAIGAGVAVGFAGLGSGLGQGIAAAGSVGAVAEDSDMFARGIIFSALPETQAIYGFLIAILLLVFSGLLG 80 (161)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccC
Confidence 34556899999999999999999999999999999999999999999999999999999999999999999776653
No 28
>PRK13471 F0F1 ATP synthase subunit C; Provisional
Probab=99.39 E-value=9.3e-13 Score=101.29 Aligned_cols=67 Identities=18% Similarity=0.392 Sum_probs=62.5
Q ss_pred HHHHHHHHHHHHhhhhhchhhhHhhhhhhhccccccccccc----hhhHHHHHHHHHHHHHHHHHHHHHhh
Q psy15658 32 MWATLGIALSVALSVVGAALGIHTVGVSIIGGGVKAPRIKT----KNLISVIFCEAVAIYGLITAIVLSGQ 98 (235)
Q Consensus 32 ~l~~lGagLa~gLsaIGsa~Gig~ag~aa~ga~~~~Pe~~~----k~lI~~af~ea~~IYGlIiafli~~k 98 (235)
...++|++++++++++|+++|+|.++.+++++++||||.++ ++++..+++|+++||+++++|+++..
T Consensus 14 ~~~~igagla~glaaiGagiG~G~~~~~a~~avaRqPe~~g~l~~~~~ig~aL~Ea~~iy~lvva~lllf~ 84 (85)
T PRK13471 14 LGKYIGAGLCMGIGAIGPGIGEGNIGAHAMDAMARQPEMVGTITTRMLLADAVAETTGIYSLLIAFLILLV 84 (85)
T ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcChHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 56789999999999999999999999999999999999876 68999999999999999999998764
No 29
>PRK05880 F0F1 ATP synthase subunit C; Validated
Probab=99.39 E-value=3.7e-12 Score=97.19 Aligned_cols=72 Identities=17% Similarity=0.186 Sum_probs=66.7
Q ss_pred HHHHHHHHhHHHHHHHhhHhHHHHHHHHHHHHHHhhhCch----hhHHHHHHHHHHHHHHHHHHHHHHHHHhcccc
Q psy15658 117 FGGYLMFGAGLSVGLVNLFCGMAVGIVGSGAALADAANSN----LFVKILIVEIFGSAIGLFGLIVGIYMTSKVKM 188 (235)
Q Consensus 117 ~~g~~~lgagLavGla~lgsgig~G~~gaaa~~a~A~~Pe----lf~k~lI~~a~~EaiaIyGLVva~ll~~~~~~ 188 (235)
..+..++++|+++|++++++|+|+|.+.++++++++|||| +++++++..+++|++.+|++++.+++.+.+|+
T Consensus 5 ~~~~~~igagla~glaaiGagiG~G~v~~~a~eaiaRqPEa~~~l~~~m~iG~Al~Ea~~~~~i~~~lif~f~~p~ 80 (81)
T PRK05880 5 IAAGALIGGGLIMAGGAIGAGIGDGVAGNALISGVARQPEAQGRLFTPFFITVGLVEAAYFINLAFMALFVFATPV 80 (81)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcChhHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC
Confidence 3557899999999999999999999999999999999997 78999999999999999999999998888775
No 30
>MTH00222 ATP9 ATP synthase F0 subunit 9; Provisional
Probab=99.37 E-value=4.3e-12 Score=96.01 Aligned_cols=69 Identities=23% Similarity=0.323 Sum_probs=64.1
Q ss_pred HHHHHHHHHhHHHHHHHhhHhHHHHHHHHHHHHHHhhhCch----hhHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q psy15658 116 IFGGYLMFGAGLSVGLVNLFCGMAVGIVGSGAALADAANSN----LFVKILIVEIFGSAIGLFGLIVGIYMTSK 185 (235)
Q Consensus 116 ~~~g~~~lgagLavGla~lgsgig~G~~gaaa~~a~A~~Pe----lf~k~lI~~a~~EaiaIyGLVva~ll~~~ 185 (235)
+..+...+++|+++ ++++++|+|+|.+.++.+++++|||| +++++++..++.|+++||++++++++++.
T Consensus 4 ~~~~~~~igaGla~-iaa~GagiG~G~~~~~~~e~vaRqPe~~~~l~~~~~ig~Al~Ea~~i~~lvia~lllfa 76 (77)
T MTH00222 4 ILTAAKFVGAGAAT-IGAAGSGAGIGTVFGNLIIGYARNPSLKQQLFTYAILGFAISEAMGLFCLMMAFLILFA 76 (77)
T ss_pred HHHHHHHHHHHHHH-HHhhhhHHHHHHHHHHHHHHHHcChhhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 44667899999999 99999999999999999999999997 78999999999999999999999998764
No 31
>PRK06251 V-type ATP synthase subunit K; Validated
Probab=99.36 E-value=1e-12 Score=104.17 Aligned_cols=67 Identities=24% Similarity=0.350 Sum_probs=63.3
Q ss_pred HHHHHHHHHHHHhhhhhchhhhHhhhhhhhccccccccccchhhHHHHHHHHHHHHHHHHHHHHHhh
Q psy15658 32 MWATLGIALSVALSVVGAALGIHTVGVSIIGGGVKAPRIKTKNLISVIFCEAVAIYGLITAIVLSGQ 98 (235)
Q Consensus 32 ~l~~lGagLa~gLsaIGsa~Gig~ag~aa~ga~~~~Pe~~~k~lI~~af~ea~~IYGlIiafli~~k 98 (235)
...++|++++++++++|+++|++.++++++++++||||.++++++..+|+|+++|||++++|+++..
T Consensus 34 ~~~~igaGLavGLaaigsgiG~G~~~aaai~aiAr~Pe~~g~~ii~~al~Ea~aIyglvVa~lLlf~ 100 (102)
T PRK06251 34 AGINIGAGLAVGLAAIGAGIAVGMAAAAGIGVLTERRDMFGTVLIFVAIGEGIAVYGILFAVLMLFG 100 (102)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 4467999999999999999999999999999999999999999999999999999999999998754
No 32
>CHL00061 atpH ATP synthase CF0 C subunit
Probab=99.36 E-value=1.6e-12 Score=99.20 Aligned_cols=67 Identities=28% Similarity=0.453 Sum_probs=62.1
Q ss_pred HHHHHHHHHHHHhhhhhchhhhHhhhhhhhcccccccccc----chhhHHHHHHHHHHHHHHHHHHHHHhh
Q psy15658 32 MWATLGIALSVALSVVGAALGIHTVGVSIIGGGVKAPRIK----TKNLISVIFCEAVAIYGLITAIVLSGQ 98 (235)
Q Consensus 32 ~l~~lGagLa~gLsaIGsa~Gig~ag~aa~ga~~~~Pe~~----~k~lI~~af~ea~~IYGlIiafli~~k 98 (235)
.+..+|++++++++++|+++|+|.++++++++++||||.. +++++..+|.|+++||++++++++...
T Consensus 7 ~~~~i~agl~~Gla~lgagig~G~~~~~a~~aiarqPe~~~~l~~~~~i~~al~Ea~aiy~lvvalillf~ 77 (81)
T CHL00061 7 AASVIAAGLAVGLASIGPGVGQGTAAGQAVEGIARQPEAEGKIRGTLLLSLAFMEALTIYGLVVALALLFA 77 (81)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCchHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 3578999999999999999999999999999999999965 459999999999999999999998776
No 33
>PRK07159 F0F1 ATP synthase subunit C; Validated
Probab=99.34 E-value=5.9e-12 Score=99.48 Aligned_cols=67 Identities=21% Similarity=0.253 Sum_probs=61.5
Q ss_pred HHHHHHHhHHHHHHHhhHhHHHHHHHHHHHHHHhhhCch----hhHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q psy15658 118 GGYLMFGAGLSVGLVNLFCGMAVGIVGSGAALADAANSN----LFVKILIVEIFGSAIGLFGLIVGIYMTSK 185 (235)
Q Consensus 118 ~g~~~lgagLavGla~lgsgig~G~~gaaa~~a~A~~Pe----lf~k~lI~~a~~EaiaIyGLVva~ll~~~ 185 (235)
..+..+++|+++ ++++++|++||.++++++++++|||| +++++++..+++|+++||+|++++++++.
T Consensus 29 ~~~~~igaGLa~-laaiGagiG~G~~~~~a~eaiARqPea~~~l~~~~~ig~Al~EalaI~~lvia~lllf~ 99 (100)
T PRK07159 29 LKAAYIGAGLAM-IGVIGVGLGQGYAFGKAVEAIARNPEAQKQVFKLLFIGSAISETSSIYALLVAFILIFV 99 (100)
T ss_pred hhHHHHHHHHHH-HHHhhHHHHHHHHHHHHHHHHHhChHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 336889999999 99999999999999999999999998 47779999999999999999999998764
No 34
>PRK08344 V-type ATP synthase subunit K; Validated
Probab=99.34 E-value=4.8e-12 Score=107.03 Aligned_cols=66 Identities=32% Similarity=0.432 Sum_probs=62.6
Q ss_pred HHHHHhHHHHHHHhhHhHHHHHHHHHHHHHHhhhCchhhHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q psy15658 120 YLMFGAGLSVGLVNLFCGMAVGIVGSGAALADAANSNLFVKILIVEIFGSAIGLFGLIVGIYMTSK 185 (235)
Q Consensus 120 ~~~lgagLavGla~lgsgig~G~~gaaa~~a~A~~Pelf~k~lI~~a~~EaiaIyGLVva~ll~~~ 185 (235)
|..+++++++|+++++|++++|+++++++++.+||||.+.|+++..+++|+++|||||+++++...
T Consensus 2 ~~~lG~~la~gls~iGsa~G~g~ag~aa~g~~~~~P~~~~~~li~~a~~~t~~IYGlvi~~~i~~~ 67 (157)
T PRK08344 2 YVALGAALAAGLAGAASSFGVGIAGSAAAGAVAEDEKNFRNALILAGLPMTQTIYGLITLFLILMY 67 (157)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Confidence 678999999999999999999999999999999999999999999999999999999999776544
No 35
>PRK13469 F0F1 ATP synthase subunit C; Provisional
Probab=99.33 E-value=2.3e-12 Score=97.72 Aligned_cols=66 Identities=27% Similarity=0.410 Sum_probs=60.2
Q ss_pred HHHHHHHHHHHHhhhhhchhhhHhhhhhhhccccccccccc----hhhHHHHHHHHHHHHHHHHHHHHHhh
Q psy15658 32 MWATLGIALSVALSVVGAALGIHTVGVSIIGGGVKAPRIKT----KNLISVIFCEAVAIYGLITAIVLSGQ 98 (235)
Q Consensus 32 ~l~~lGagLa~gLsaIGsa~Gig~ag~aa~ga~~~~Pe~~~----k~lI~~af~ea~~IYGlIiafli~~k 98 (235)
.+.++|+++++ ++++|+++|+|.++++++++++||||.++ ++++..+|+|+++|||++++++++..
T Consensus 9 ~~~~igagla~-laalGagig~G~~~~~a~~a~arqPe~~g~l~~~~~i~~al~Eal~i~glvva~illf~ 78 (79)
T PRK13469 9 GMSAIGAGIAA-LAGIGAGIGIGIATGKAVEAVGRQPEASGKIMSTMLLGAALAEATAIYGLVIAIILLFV 78 (79)
T ss_pred HHHHHHHHHHH-HHHHHHHHhHHHHHHHHHHHHHcCchHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 46889999999 99999999999999999999999999654 46899999999999999999998653
No 36
>PRK06876 F0F1 ATP synthase subunit C; Validated
Probab=99.30 E-value=4.5e-12 Score=96.12 Aligned_cols=67 Identities=24% Similarity=0.433 Sum_probs=62.3
Q ss_pred HHHHHHHHHHHHhhhhhchhhhHhhhhhhhccccccccccc----hhhHHHHHHHHHHHHHHHHHHHHHhh
Q psy15658 32 MWATLGIALSVALSVVGAALGIHTVGVSIIGGGVKAPRIKT----KNLISVIFCEAVAIYGLITAIVLSGQ 98 (235)
Q Consensus 32 ~l~~lGagLa~gLsaIGsa~Gig~ag~aa~ga~~~~Pe~~~----k~lI~~af~ea~~IYGlIiafli~~k 98 (235)
...++|++++++++++|+++|+|.++++++++++||||..+ ++++..+++|+.+||++++++++...
T Consensus 6 ~~~~i~agla~glaaiGagiG~G~~~~~a~~~iaRqPe~~~~l~~~~~ig~Al~Ea~~i~~lvva~illf~ 76 (78)
T PRK06876 6 GLTAIAAAIAIGLAALGAAIGIGLLGGKFLEGAARQPELIPMLQTKMFIGAGLVDAIPIIGVGIALLFLFA 76 (78)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcChHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 35789999999999999999999999999999999999765 79999999999999999999998765
No 37
>PRK07354 F0F1 ATP synthase subunit C; Validated
Probab=99.29 E-value=6e-12 Score=95.88 Aligned_cols=66 Identities=29% Similarity=0.480 Sum_probs=61.5
Q ss_pred HHHHHHHHHHHhhhhhchhhhHhhhhhhhccccccccccc----hhhHHHHHHHHHHHHHHHHHHHHHhh
Q psy15658 33 WATLGIALSVALSVVGAALGIHTVGVSIIGGGVKAPRIKT----KNLISVIFCEAVAIYGLITAIVLSGQ 98 (235)
Q Consensus 33 l~~lGagLa~gLsaIGsa~Gig~ag~aa~ga~~~~Pe~~~----k~lI~~af~ea~~IYGlIiafli~~k 98 (235)
+.++|++++++++++|+++|+|.++++++++++||||.++ ++++..+|+|+.+||++++++++...
T Consensus 8 ~~~igagl~~Gla~lgagig~G~~~~~~~~~iArqPe~~~~~~~~~~i~~al~Ea~ai~~lvvallllf~ 77 (81)
T PRK07354 8 ASVVAAALAVGLAAIGPGIGQGNAAGGAVEGIARQPEAEGKIRGTLLLSLAFMESLTIYGLVVALVLLFA 77 (81)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 5789999999999999999999999999999999999754 57999999999999999999998765
No 38
>PRK09621 V-type ATP synthase subunit K; Provisional
Probab=99.29 E-value=1.4e-11 Score=102.63 Aligned_cols=69 Identities=19% Similarity=0.314 Sum_probs=65.1
Q ss_pred HHHHHhHHHHHHHhhHhHHHHHHHHHHHHHHhhhCchhhHHHHHHHHHHHHHHHHHHHHHHHHHhcccc
Q psy15658 120 YLMFGAGLSVGLVNLFCGMAVGIVGSGAALADAANSNLFVKILIVEIFGSAIGLFGLIVGIYMTSKVKM 188 (235)
Q Consensus 120 ~~~lgagLavGla~lgsgig~G~~gaaa~~a~A~~Pelf~k~lI~~a~~EaiaIyGLVva~ll~~~~~~ 188 (235)
+.++++++++++++++|+|+++++|++++....|+||.|.|.+++.++||+++|||||++++++.+.+.
T Consensus 4 ~~~~G~a~a~~ls~iGsa~G~~~aG~a~~G~~~e~p~~~~~~~i~~~lP~tq~IYG~ii~~li~~~~~~ 72 (141)
T PRK09621 4 MSVVGPALAMGLAMIGSAIGCGMAGVASHAVMSRIDEGHGKIIGLSAMPSSQSIYGLILMLLLNDAIKD 72 (141)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCchhhhhHHHHHHhHHHHHHHHHHHHHHHHHHccc
Confidence 567899999999999999999999999999999999999999999999999999999999999877544
No 39
>PRK13466 F0F1 ATP synthase subunit C; Provisional
Probab=99.28 E-value=1.8e-11 Score=90.19 Aligned_cols=57 Identities=16% Similarity=0.216 Sum_probs=54.0
Q ss_pred HHHHHHHhhHhHHHHHHHHHHHHHHhhhCch----hhHHHHHHHHHHHHHHHHHHHHHHHH
Q psy15658 126 GLSVGLVNLFCGMAVGIVGSGAALADAANSN----LFVKILIVEIFGSAIGLFGLIVGIYM 182 (235)
Q Consensus 126 gLavGla~lgsgig~G~~gaaa~~a~A~~Pe----lf~k~lI~~a~~EaiaIyGLVva~ll 182 (235)
++++|++++++|+|+|.+.++++++++|||| +++++++..+++|+++||++++++++
T Consensus 5 ~l~~glaa~GagiG~G~~~~~~~e~vaRqPea~~~l~~~~~ig~al~Ea~~i~alvia~l~ 65 (66)
T PRK13466 5 ALALGLACLGVSIGEGLLVASYLSSTARQPEMQSKLMAGVFLGVAFIEGTFFVTLAMTFVL 65 (66)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHcChhHHHhHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 5888999999999999999999999999997 78999999999999999999999874
No 40
>TIGR01100 V_ATP_synt_C vacuolar ATP synthase 16 kDa proteolipid subunit. The principal role V-ATPases are the acidification of intracellular compartments of eukaryotic cells.
Probab=99.26 E-value=1.5e-11 Score=98.48 Aligned_cols=82 Identities=18% Similarity=0.299 Sum_probs=67.6
Q ss_pred HHHHHhHHHHHHHhhHhHHHHHHHHHHHHHHhhhCchhhHHHHHHHHHHHHHHHHHHHHHHHHHhccccchhhhhhhhcc
Q psy15658 120 YLMFGAGLSVGLVNLFCGMAVGIVGSGAALADAANSNLFVKILIVEIFGSAIGLFGLIVGIYMTSKVKMGNKVLRALWAS 199 (235)
Q Consensus 120 ~~~lgagLavGla~lgsgig~G~~gaaa~~a~A~~Pelf~k~lI~~a~~EaiaIyGLVva~ll~~~~~~~~~~~~~~~~~ 199 (235)
+.++++++++++++++|+|++++++..-+.+-.++||.|.|.++..+++|+++|||||++++++.+.+.++ ..+++++
T Consensus 2 ~~~lG~a~a~~ls~iGsA~G~~~aG~~~a~~gv~~P~~~~k~lI~vi~~g~~gIYGlIia~ii~~~i~~~~--~~s~~~g 79 (108)
T TIGR01100 2 FGVMGAAAALVFSALGAAYGTAKSGVGIAAMGVMRPELIMKSIIPVVMAGIIAIYGLVVAVLIAGSLKPKS--NYSLYKG 79 (108)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHhhhhhHHHhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCcc--ccCHHHH
Confidence 56899999999999999999999996666656666999999999999999999999999999999875432 1244445
Q ss_pred ccce
Q psy15658 200 SGLY 203 (235)
Q Consensus 200 ~~~~ 203 (235)
|.++
T Consensus 80 ~~~~ 83 (108)
T TIGR01100 80 FIHL 83 (108)
T ss_pred HHHH
Confidence 4443
No 41
>PRK07558 F0F1 ATP synthase subunit C; Validated
Probab=99.26 E-value=1.3e-11 Score=92.76 Aligned_cols=66 Identities=24% Similarity=0.394 Sum_probs=61.3
Q ss_pred HHHHHHHHHHHHHhhhhhchhhhHhhhhhhhcccccccc----ccchhhHHHHHHHHHHHHHHHHHHHHHh
Q psy15658 31 YMWATLGIALSVALSVVGAALGIHTVGVSIIGGGVKAPR----IKTKNLISVIFCEAVAIYGLITAIVLSG 97 (235)
Q Consensus 31 ~~l~~lGagLa~gLsaIGsa~Gig~ag~aa~ga~~~~Pe----~~~k~lI~~af~ea~~IYGlIiafli~~ 97 (235)
.....+|+++++ ++++|+++|+|.++.+++++++|||| +++++++..+|.|+.+||++++++++..
T Consensus 4 ~~~~~igagla~-laa~GagiG~G~~~~~a~e~iaRqPe~~~~l~~~~~ig~Al~Ea~~i~alvva~lllf 73 (74)
T PRK07558 4 EALKFIGAGLAC-IGMAGAALGVGNIFGNYLSGALRNPSAADSQFGYLLIGAALAEALGIFSFLIALLLLF 73 (74)
T ss_pred hHHHHHHHHHHH-HHhhhHHHHHHHHHHHHHHHHHcCchHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 356789999999 99999999999999999999999999 6677999999999999999999999764
No 42
>PRK13467 F0F1 ATP synthase subunit C; Provisional
Probab=99.25 E-value=2.6e-11 Score=89.35 Aligned_cols=56 Identities=13% Similarity=0.156 Sum_probs=52.2
Q ss_pred HHHHHHhhHhHHHHHHHHHHHHHHhhhCch----hhHHHHHHHHHHHHHHHHHHHHHHHH
Q psy15658 127 LSVGLVNLFCGMAVGIVGSGAALADAANSN----LFVKILIVEIFGSAIGLFGLIVGIYM 182 (235)
Q Consensus 127 LavGla~lgsgig~G~~gaaa~~a~A~~Pe----lf~k~lI~~a~~EaiaIyGLVva~ll 182 (235)
+++|++++++|+|+|.+.++++++++|||| +++++++..++.|+++||++++++++
T Consensus 6 i~~GlaaiGagiG~G~v~~~a~e~iaRqPE~~~~i~~~m~ig~Al~Ea~~i~~lvia~il 65 (66)
T PRK13467 6 LALALACMGVSLGEGFLMANLFKSAARQPEMIGQLRSLMILGVAFIEGTFFVTLVMSFIL 65 (66)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHcChhHHHhHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 556788899999999999999999999997 78899999999999999999999975
No 43
>PRK13468 F0F1 ATP synthase subunit C; Provisional
Probab=99.21 E-value=2.9e-11 Score=92.43 Aligned_cols=67 Identities=18% Similarity=0.313 Sum_probs=61.2
Q ss_pred HHHHHHHHHHHHhhhhhchhhhHhhhhhhhccccccccccc----hhhHHHHHHHHHHHHHHHHHHHHHhh
Q psy15658 32 MWATLGIALSVALSVVGAALGIHTVGVSIIGGGVKAPRIKT----KNLISVIFCEAVAIYGLITAIVLSGQ 98 (235)
Q Consensus 32 ~l~~lGagLa~gLsaIGsa~Gig~ag~aa~ga~~~~Pe~~~----k~lI~~af~ea~~IYGlIiafli~~k 98 (235)
...++|++++++++++|+++|+|.++.+++++++||||..+ ++++..+++|+.+||++++++++...
T Consensus 7 ~~~~igaglaigla~lgagig~G~~~~~a~~~iaRqPe~~g~l~~~m~ig~al~E~~ai~alviallllfa 77 (82)
T PRK13468 7 VVSIIAAGLAVSIGAIGPALAEGRAVAAALDAIAQQPDAAGTISRTLFVGLAMIESMAIYCFVVAMILLFA 77 (82)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 45779999999999999999999999999999999999765 47788999999999999999998765
No 44
>TIGR03322 alt_F1F0_F0_C alternate F1F0 ATPase, F0 subunit C. A small number of taxonomically diverse prokaryotic species, including Methanosarcina barkeri, have what appears to be a second ATP synthase, in addition to the normal F1F0 ATPase in bacteria and A1A0 ATPase in archaea. These enzymes use ion gradients to synthesize ATP, and in principle may run in either direction. This model represents the F0 subunit C of this apparent second ATP synthase.
Probab=99.20 E-value=3.1e-11 Score=93.05 Aligned_cols=68 Identities=18% Similarity=0.292 Sum_probs=62.3
Q ss_pred HHHHHHHHHHHHhhhhhchhhhHhhhhhhhcccccccccc----chhhHHHHHHHHHHHHHHHHHHHHHhhc
Q psy15658 32 MWATLGIALSVALSVVGAALGIHTVGVSIIGGGVKAPRIK----TKNLISVIFCEAVAIYGLITAIVLSGQL 99 (235)
Q Consensus 32 ~l~~lGagLa~gLsaIGsa~Gig~ag~aa~ga~~~~Pe~~----~k~lI~~af~ea~~IYGlIiafli~~ki 99 (235)
.+.++|++++++++++|+++|+|.++.+++++++||||.. +++++..++.|+.+||++++++++....
T Consensus 8 ~~~~igagl~~gla~igagiG~G~~~~~a~e~iaRqPe~~~~i~~~m~ig~AlvEa~ai~alvia~lllf~~ 79 (86)
T TIGR03322 8 VASIVTAGLTIAIGSIGPALGEGRAVAQALTALAQQPDASNTITRTLFVGLAMIESTAIYCFVVSMILIFAN 79 (86)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4578999999999999999999999999999999999975 5588889999999999999999987763
No 45
>TIGR01260 ATP_synt_c ATP synthase, F0 subunit c. This model describes the subunit c in F1/F0-ATP synthase, a membrane associated multisubunit complex found in bacteria and organelles of higher eukaryotes, namely, mitochondria and chloroplast. This enzyme is principally involved in the synthesis of ATP from ADP and inorganic phosphate by coupling the energy derived from the proton electrochemical gradient across the biological membrane. A brief description of this multisubunit enzyme complex: F1 and F0 represent two major clusters of subunits. The functional role of subunit c, which is the part of F0 cluster, has been delineated in-vitro reconstitution experiments. Overall experimental proof exists that demonstrate the electrochemical gradient is converted into a rotational torque that leads to ATP synthesis.
Probab=99.19 E-value=5e-11 Score=85.69 Aligned_cols=53 Identities=15% Similarity=0.243 Sum_probs=49.6
Q ss_pred HhhHhHHHHHHHHHHHHHHhhhCchh----hHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy15658 132 VNLFCGMAVGIVGSGAALADAANSNL----FVKILIVEIFGSAIGLFGLIVGIYMTS 184 (235)
Q Consensus 132 a~lgsgig~G~~gaaa~~a~A~~Pel----f~k~lI~~a~~EaiaIyGLVva~ll~~ 184 (235)
+++++|+|+|.++++++++++||||. ++++++..+++|+++||++++++++++
T Consensus 1 aa~GagiG~G~i~~~a~~~iaRqPe~~~~l~~~~~ig~al~Ea~~i~~lvia~lllf 57 (58)
T TIGR01260 1 AAIGAAIGIGILGGKFLESAARQPELKPLLRTTMFIGMGLVDAIPMIAVVIALILLF 57 (58)
T ss_pred CcchhHHHHHHHHHHHHHHHHcChhHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 36789999999999999999999975 999999999999999999999999875
No 46
>PRK08482 F0F1 ATP synthase subunit C; Validated
Probab=99.18 E-value=4.6e-11 Score=95.20 Aligned_cols=68 Identities=22% Similarity=0.449 Sum_probs=63.1
Q ss_pred HHHHHHHHHHHHhhhhhchhhhHhhhhhhhccccccccccch----hhHHHHHHHHHHHHHHHHHHHHHhhc
Q psy15658 32 MWATLGIALSVALSVVGAALGIHTVGVSIIGGGVKAPRIKTK----NLISVIFCEAVAIYGLITAIVLSGQL 99 (235)
Q Consensus 32 ~l~~lGagLa~gLsaIGsa~Gig~ag~aa~ga~~~~Pe~~~k----~lI~~af~ea~~IYGlIiafli~~ki 99 (235)
...++|++++++++++|+++|+|.++.+++++++||||..++ +++..+++|+.+||++++++++....
T Consensus 30 ~~~~igagla~Glaa~GagiG~G~~~~~a~e~iaRqPe~~~~i~~~~~ig~Al~Ea~~i~alvia~illf~n 101 (105)
T PRK08482 30 SYSVLAAGIGLGIAALGGAIGMGNTAAATIAGTARNPGLGGKLMTTMFIALAMIEAQVIYALVIALIALYAN 101 (105)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcChhHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 457899999999999999999999999999999999997655 89999999999999999999988763
No 47
>PRK07874 F0F1 ATP synthase subunit C; Validated
Probab=99.17 E-value=1.2e-10 Score=88.78 Aligned_cols=63 Identities=30% Similarity=0.413 Sum_probs=54.3
Q ss_pred cHHHHHHHHHhHHHHHHHhhHhHHHHHHHHHHHHHHhhhCch----hhHHHHHHHHHHHHHHHHHHHHHHH
Q psy15658 115 NIFGGYLMFGAGLSVGLVNLFCGMAVGIVGSGAALADAANSN----LFVKILIVEIFGSAIGLFGLIVGIY 181 (235)
Q Consensus 115 s~~~g~~~lgagLavGla~lgsgig~G~~gaaa~~a~A~~Pe----lf~k~lI~~a~~EaiaIyGLVva~l 181 (235)
+...+...++ +|++++++|+|+|.+.++++++++|||| +++++++..++.|+.+||+++++|+
T Consensus 13 ~~~~~~~~ig----~GlaaiGagiG~G~~~~~a~e~iARqPEa~~~l~~~m~lG~Al~Ea~~i~~lvia~l 79 (80)
T PRK07874 13 TTFTGLGAVG----YGLAAIGPGIGVGIVVGKALEGMARQPEMAGQLRTTMFLGIAFVEALALIGLVAGFL 79 (80)
T ss_pred HHHhhHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHcCHhHHHhHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3445555555 4566789999999999999999999997 7889999999999999999999986
No 48
>PRK07159 F0F1 ATP synthase subunit C; Validated
Probab=99.17 E-value=4.6e-11 Score=94.41 Aligned_cols=65 Identities=23% Similarity=0.317 Sum_probs=59.6
Q ss_pred HHHHHHHHHHHhhhhhchhhhHhhhhhhhcccccccccc----chhhHHHHHHHHHHHHHHHHHHHHHhh
Q psy15658 33 WATLGIALSVALSVVGAALGIHTVGVSIIGGGVKAPRIK----TKNLISVIFCEAVAIYGLITAIVLSGQ 98 (235)
Q Consensus 33 l~~lGagLa~gLsaIGsa~Gig~ag~aa~ga~~~~Pe~~----~k~lI~~af~ea~~IYGlIiafli~~k 98 (235)
+.++|+++++ ++++|+++|+|.++.+++++++||||.. +++++..+++|+++||++++++++...
T Consensus 31 ~~~igaGLa~-laaiGagiG~G~~~~~a~eaiARqPea~~~l~~~~~ig~Al~EalaI~~lvia~lllf~ 99 (100)
T PRK07159 31 AAYIGAGLAM-IGVIGVGLGQGYAFGKAVEAIARNPEAQKQVFKLLFIGSAISETSSIYALLVAFILIFV 99 (100)
T ss_pred HHHHHHHHHH-HHHhhHHHHHHHHHHHHHHHHHhChHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 4789999999 9999999999999999999999999974 558999999999999999999998653
No 49
>MTH00222 ATP9 ATP synthase F0 subunit 9; Provisional
Probab=99.13 E-value=1.1e-10 Score=88.30 Aligned_cols=66 Identities=23% Similarity=0.338 Sum_probs=60.6
Q ss_pred HHHHHHHHHHHHhhhhhchhhhHhhhhhhhcccccccccc----chhhHHHHHHHHHHHHHHHHHHHHHhh
Q psy15658 32 MWATLGIALSVALSVVGAALGIHTVGVSIIGGGVKAPRIK----TKNLISVIFCEAVAIYGLITAIVLSGQ 98 (235)
Q Consensus 32 ~l~~lGagLa~gLsaIGsa~Gig~ag~aa~ga~~~~Pe~~----~k~lI~~af~ea~~IYGlIiafli~~k 98 (235)
...++|+++++ ++++|+++|+|.+..+.+++++||||.. +++++..++.|+.+||+++++++++..
T Consensus 7 ~~~~igaGla~-iaa~GagiG~G~~~~~~~e~vaRqPe~~~~l~~~~~ig~Al~Ea~~i~~lvia~lllfa 76 (77)
T MTH00222 7 AAKFVGAGAAT-IGAAGSGAGIGTVFGNLIIGYARNPSLKQQLFTYAILGFAISEAMGLFCLMMAFLILFA 76 (77)
T ss_pred HHHHHHHHHHH-HHhhhhHHHHHHHHHHHHHHHHcChhhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 45789999999 9999999999999999999999999965 569999999999999999999998764
No 50
>PRK13464 F0F1 ATP synthase subunit C; Provisional
Probab=99.11 E-value=1.5e-10 Score=91.54 Aligned_cols=68 Identities=19% Similarity=0.356 Sum_probs=63.3
Q ss_pred HHHHHHHHHHHHhhhhhchhhhHhhhhhhhcccccccccc----chhhHHHHHHHHHHHHHHHHHHHHHhhc
Q psy15658 32 MWATLGIALSVALSVVGAALGIHTVGVSIIGGGVKAPRIK----TKNLISVIFCEAVAIYGLITAIVLSGQL 99 (235)
Q Consensus 32 ~l~~lGagLa~gLsaIGsa~Gig~ag~aa~ga~~~~Pe~~----~k~lI~~af~ea~~IYGlIiafli~~ki 99 (235)
....++++++++++++|+++|+|.+.++.+++++||||.. +++++..++.|+.+||++++++++..+.
T Consensus 13 ~~~~i~agl~iglaaiGagiGiG~v~~~ale~iARQPEa~~~l~t~m~IG~AliEa~ai~alvia~lllFa~ 84 (101)
T PRK13464 13 GLTAVAVALLISLPALGTAIGFGVLGGKYLEGVARQPELGGMLLGRMFIVAAFVDAFAAISIAIGFLVLYAN 84 (101)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcChhHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 5678999999999999999999999999999999999964 5699999999999999999999998874
No 51
>PRK05880 F0F1 ATP synthase subunit C; Validated
Probab=99.07 E-value=3.4e-10 Score=86.45 Aligned_cols=67 Identities=25% Similarity=0.285 Sum_probs=60.0
Q ss_pred HHHHHHHHHHHHhhhhhchhhhHhhhhhhhcccccccccc----chhhHHHHHHHHHHHHHHHHHHHHHhh
Q psy15658 32 MWATLGIALSVALSVVGAALGIHTVGVSIIGGGVKAPRIK----TKNLISVIFCEAVAIYGLITAIVLSGQ 98 (235)
Q Consensus 32 ~l~~lGagLa~gLsaIGsa~Gig~ag~aa~ga~~~~Pe~~----~k~lI~~af~ea~~IYGlIiafli~~k 98 (235)
...++|++++++++++|+++|+|.+.++++++++||||.. +++++..+++|++.+|++++.+++...
T Consensus 7 ~~~~igagla~glaaiGagiG~G~v~~~a~eaiaRqPEa~~~l~~~m~iG~Al~Ea~~~~~i~~~lif~f~ 77 (81)
T PRK05880 7 AGALIGGGLIMAGGAIGAGIGDGVAGNALISGVARQPEAQGRLFTPFFITVGLVEAAYFINLAFMALFVFA 77 (81)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcChhHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 3467999999999999999999999999999999999964 569999999999999988888876654
No 52
>PRK13467 F0F1 ATP synthase subunit C; Provisional
Probab=99.03 E-value=3.7e-10 Score=83.27 Aligned_cols=56 Identities=21% Similarity=0.418 Sum_probs=50.6
Q ss_pred HHHHhhhhhchhhhHhhhhhhhcccccccccc----chhhHHHHHHHHHHHHHHHHHHHH
Q psy15658 40 LSVALSVVGAALGIHTVGVSIIGGGVKAPRIK----TKNLISVIFCEAVAIYGLITAIVL 95 (235)
Q Consensus 40 La~gLsaIGsa~Gig~ag~aa~ga~~~~Pe~~----~k~lI~~af~ea~~IYGlIiafli 95 (235)
++++++++|+++|+|.+.++++++++||||.. +++++..++.|+.+||++++++++
T Consensus 6 i~~GlaaiGagiG~G~v~~~a~e~iaRqPE~~~~i~~~m~ig~Al~Ea~~i~~lvia~il 65 (66)
T PRK13467 6 LALALACMGVSLGEGFLMANLFKSAARQPEMIGQLRSLMILGVAFIEGTFFVTLVMSFIL 65 (66)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHcChhHHHhHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 44567778999999999999999999999965 559999999999999999999986
No 53
>PRK13466 F0F1 ATP synthase subunit C; Provisional
Probab=99.03 E-value=3.3e-10 Score=83.47 Aligned_cols=57 Identities=23% Similarity=0.404 Sum_probs=52.7
Q ss_pred HHHHHhhhhhchhhhHhhhhhhhcccccccccc----chhhHHHHHHHHHHHHHHHHHHHH
Q psy15658 39 ALSVALSVVGAALGIHTVGVSIIGGGVKAPRIK----TKNLISVIFCEAVAIYGLITAIVL 95 (235)
Q Consensus 39 gLa~gLsaIGsa~Gig~ag~aa~ga~~~~Pe~~----~k~lI~~af~ea~~IYGlIiafli 95 (235)
+++++++++|+++|+|.+..+++++++||||.. +++++..++.|+.+||+++++|++
T Consensus 5 ~l~~glaa~GagiG~G~~~~~~~e~vaRqPea~~~l~~~~~ig~al~Ea~~i~alvia~l~ 65 (66)
T PRK13466 5 ALALGLACLGVSIGEGLLVASYLSSTARQPEMQSKLMAGVFLGVAFIEGTFFVTLAMTFVL 65 (66)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHcChhHHHhHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 477889999999999999999999999999965 559999999999999999999985
No 54
>TIGR01260 ATP_synt_c ATP synthase, F0 subunit c. This model describes the subunit c in F1/F0-ATP synthase, a membrane associated multisubunit complex found in bacteria and organelles of higher eukaryotes, namely, mitochondria and chloroplast. This enzyme is principally involved in the synthesis of ATP from ADP and inorganic phosphate by coupling the energy derived from the proton electrochemical gradient across the biological membrane. A brief description of this multisubunit enzyme complex: F1 and F0 represent two major clusters of subunits. The functional role of subunit c, which is the part of F0 cluster, has been delineated in-vitro reconstitution experiments. Overall experimental proof exists that demonstrate the electrochemical gradient is converted into a rotational torque that leads to ATP synthesis.
Probab=98.97 E-value=5.6e-10 Score=80.28 Aligned_cols=53 Identities=23% Similarity=0.493 Sum_probs=49.4
Q ss_pred hhhhchhhhHhhhhhhhccccccccc----cchhhHHHHHHHHHHHHHHHHHHHHHh
Q psy15658 45 SVVGAALGIHTVGVSIIGGGVKAPRI----KTKNLISVIFCEAVAIYGLITAIVLSG 97 (235)
Q Consensus 45 saIGsa~Gig~ag~aa~ga~~~~Pe~----~~k~lI~~af~ea~~IYGlIiafli~~ 97 (235)
+++|+++|+|.++++++++++||||. ++++++..+|.|+.+||+++++++++.
T Consensus 1 aa~GagiG~G~i~~~a~~~iaRqPe~~~~l~~~~~ig~al~Ea~~i~~lvia~lllf 57 (58)
T TIGR01260 1 AAIGAAIGIGILGGKFLESAARQPELKPLLRTTMFIGMGLVDAIPMIAVVIALILLF 57 (58)
T ss_pred CcchhHHHHHHHHHHHHHHHHcChhHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 47899999999999999999999997 677999999999999999999999764
No 55
>PRK07874 F0F1 ATP synthase subunit C; Validated
Probab=98.93 E-value=2.2e-09 Score=81.80 Aligned_cols=56 Identities=25% Similarity=0.530 Sum_probs=50.4
Q ss_pred HHHHHhhhhhchhhhHhhhhhhhcccccccccc----chhhHHHHHHHHHHHHHHHHHHH
Q psy15658 39 ALSVALSVVGAALGIHTVGVSIIGGGVKAPRIK----TKNLISVIFCEAVAIYGLITAIV 94 (235)
Q Consensus 39 gLa~gLsaIGsa~Gig~ag~aa~ga~~~~Pe~~----~k~lI~~af~ea~~IYGlIiafl 94 (235)
.++.+++++|+++|+|.+..+++++++||||.. +++++..++.|+.+||+++++|+
T Consensus 20 ~ig~GlaaiGagiG~G~~~~~a~e~iARqPEa~~~l~~~m~lG~Al~Ea~~i~~lvia~l 79 (80)
T PRK07874 20 AVGYGLAAIGPGIGVGIVVGKALEGMARQPEMAGQLRTTMFLGIAFVEALALIGLVAGFL 79 (80)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHcCHhHHHhHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 455667779999999999999999999999965 55999999999999999999987
No 56
>PRK06649 V-type ATP synthase subunit K; Validated
Probab=98.84 E-value=5.5e-09 Score=87.37 Aligned_cols=65 Identities=14% Similarity=0.263 Sum_probs=62.5
Q ss_pred HHHHHHHHHHHHhhhhhchhhhHhhhhhhhccccccccccchhhHHHHHHHHHHHHHHHHHHHHH
Q psy15658 32 MWATLGIALSVALSVVGAALGIHTVGVSIIGGGVKAPRIKTKNLISVIFCEAVAIYGLITAIVLS 96 (235)
Q Consensus 32 ~l~~lGagLa~gLsaIGsa~Gig~ag~aa~ga~~~~Pe~~~k~lI~~af~ea~~IYGlIiafli~ 96 (235)
.+.+++++|++++++..|++.+|+++.+.+++..|+||.++|+++..+|+|+.+||+|++++++.
T Consensus 78 g~~~l~aGL~vGl~gl~Sa~~qG~v~aagi~~~ak~p~~f~~~ii~~~~~Et~Al~~lv~s~~~~ 142 (143)
T PRK06649 78 PWLLLGAGIGGGLAIAASAFAQGKAAAGACDALAETGKGFANYLLVLGLIETVALFVMVFLMIFK 142 (143)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 57899999999999999999999999999999999999999999999999999999999999864
No 57
>KOG0233|consensus
Probab=98.66 E-value=1.6e-09 Score=93.27 Aligned_cols=87 Identities=23% Similarity=0.353 Sum_probs=76.8
Q ss_pred HHHHHHhHHHHHHHhhHhHHHHHHHHHHHHHHhhhCchhhHHHHHHHHHHHHHHHHHHHHHHHHHhccccch---hh-hh
Q psy15658 119 GYLMFGAGLSVGLVNLFCGMAVGIVGSGAALADAANSNLFVKILIVEIFGSAIGLFGLIVGIYMTSKVKMGN---KV-LR 194 (235)
Q Consensus 119 g~~~lgagLavGla~lgsgig~G~~gaaa~~a~A~~Pelf~k~lI~~a~~EaiaIyGLVva~ll~~~~~~~~---~~-~~ 194 (235)
-|+.+|.+++++++.++++||+-.+|++-+++-.|.||+.+|.++..+|||+.+|||+|+++++..|....+ .+ .+
T Consensus 41 ~wa~lGI~l~ialSv~GaawGi~~tGssiiGggVkAPRI~TKnLisIIfCEavaiyglI~Aivls~kl~~~~~~~~y~~~ 120 (196)
T KOG0233|consen 41 MWASLGIALCIALSVLGAAWGIYITGSSIIGGGVKAPRIKTKNLISIIFCEAVAIYGLIMAIVLSTKLENVSSSKAYGAQ 120 (196)
T ss_pred HHHHhhHHHhhhhhhhhhheeEEEecceeecCcccCCcccccceEEEEeehHHHHHHHHHHHHHHhhhccCCchhhhccc
Confidence 488999999999999999999999999999999999999999999999999999999999999998865443 22 33
Q ss_pred hhhccccceec
Q psy15658 195 ALWASSGLYST 205 (235)
Q Consensus 195 ~~~~~~~~~~~ 205 (235)
.++++|.+|+.
T Consensus 121 n~~~gy~lF~a 131 (196)
T KOG0233|consen 121 NLYTGYALFGA 131 (196)
T ss_pred hhhhhHHHhhh
Confidence 57777777764
No 58
>KOG0232|consensus
Probab=98.31 E-value=6.1e-07 Score=75.86 Aligned_cols=68 Identities=31% Similarity=0.470 Sum_probs=64.5
Q ss_pred HHHHHHHHHHHHhhhhhchhhhHhhhhhhhccccccccccchhhHHHHHHHHHHHHHHHHHHHHHhhc
Q psy15658 32 MWATLGIALSVALSVVGAALGIHTVGVSIIGGGVKAPRIKTKNLISVIFCEAVAIYGLITAIVLSGQL 99 (235)
Q Consensus 32 ~l~~lGagLa~gLsaIGsa~Gig~ag~aa~ga~~~~Pe~~~k~lI~~af~ea~~IYGlIiafli~~ki 99 (235)
.+..+++++.+++++.++++.+++.+.+.+....|||+.+..+++..+|.|++++||||++..+..+.
T Consensus 87 g~i~lsagl~vgl~~~~ag~aigi~gd~gvr~~~qQPr~fv~~iLiLif~evlGLygLiva~~l~~~~ 154 (156)
T KOG0232|consen 87 GFIVLSAGLAVGLAGLSAGLAIGIVGDAGVRGRAQQPRLFVGMILILIFAEVLGLYGLIVALALLTVG 154 (156)
T ss_pred HHHHHHHHHHhhhcccCCCcCcCccccccchhhhcCchhhhhHHHHHHHHHHHHHHHHHHHHhccCCC
Confidence 56779999999999999999999999999999999999999999999999999999999999988764
No 59
>KOG3025|consensus
Probab=97.77 E-value=7.6e-05 Score=61.00 Aligned_cols=71 Identities=24% Similarity=0.300 Sum_probs=63.8
Q ss_pred ccHHHHHHHHHhHHHHHHHhhHhHHHHHHHHHHHHHHhhhCch----hhHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q psy15658 114 QNIFGGYLMFGAGLSVGLVNLFCGMAVGIVGSGAALADAANSN----LFVKILIVEIFGSAIGLFGLIVGIYMTSK 185 (235)
Q Consensus 114 ~s~~~g~~~lgagLavGla~lgsgig~G~~gaaa~~a~A~~Pe----lf~k~lI~~a~~EaiaIyGLVva~ll~~~ 185 (235)
..+..+..++|+|.+. ++..++|.++|.+-++-+.+.+|||. +|...++..++.|+.++|-|.++|++++.
T Consensus 62 ~~i~~aak~igag~at-vgv~gsg~gig~vf~~li~g~arnpslk~~lfs~ailgfalsea~glfclm~aflilfa 136 (137)
T KOG3025|consen 62 RDIDTAAKFIGAGAAT-VGVAGSGAGIGTVFGSLIIGYARNPSLKQQLFSYAILGFALSEAMGLFCLMVAFLILFA 136 (137)
T ss_pred HHHHHHHHHhccchhh-hccccccchHHHHHHHHHhhccCCchHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhc
Confidence 4466888999999886 78888999999999999999999995 78889999999999999999999998764
No 60
>KOG3025|consensus
Probab=96.98 E-value=0.0011 Score=54.33 Aligned_cols=65 Identities=25% Similarity=0.371 Sum_probs=57.5
Q ss_pred HHHHHHHHHHHHhhhhhchhhhHhhhhhhhcccccccccc----chhhHHHHHHHHHHHHHHHHHHHHHh
Q psy15658 32 MWATLGIALSVALSVVGAALGIHTVGVSIIGGGVKAPRIK----TKNLISVIFCEAVAIYGLITAIVLSG 97 (235)
Q Consensus 32 ~l~~lGagLa~gLsaIGsa~Gig~ag~aa~ga~~~~Pe~~----~k~lI~~af~ea~~IYGlIiafli~~ 97 (235)
.-.++|++.+. .+..|++.|+|..-.+.+-+.+|+|.+. ...++..++.|+.++|.+.++|++..
T Consensus 67 aak~igag~at-vgv~gsg~gig~vf~~li~g~arnpslk~~lfs~ailgfalsea~glfclm~aflilf 135 (137)
T KOG3025|consen 67 AAKFIGAGAAT-VGVAGSGAGIGTVFGSLIIGYARNPSLKQQLFSYAILGFALSEAMGLFCLMVAFLILF 135 (137)
T ss_pred HHHHhccchhh-hccccccchHHHHHHHHHhhccCCchHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHh
Confidence 45689999887 6788999999999999999999999864 56899999999999999999999865
Done!