RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy15658
(235 letters)
>2bl2_A V-type sodium ATP synthase subunit K; V-type ATPase, K-ring,
membrane rotor, sodium transporter, H ION transport,
hydrolase, transmembrane; HET: LHG UMQ; 2.1A
{Enterococcus hirae} PDB: 2cyd_A* 2db4_A* 3aou_A*
Length = 156
Score = 115 bits (289), Expect = 9e-33
Identities = 29/165 (17%), Positives = 56/165 (33%), Gaps = 11/165 (6%)
Query: 21 IGWFLQTTTPYMWATLGIALSVALSVVGAALGIHTVGVSIIGGGVKAPRIKTKNLISVIF 80
+ + + ++A L +A + S +G+A G+ G + P + LI +
Sbjct: 2 MDYLITQNGGMVFAVLAMATATIFSGIGSAKGVGMTGEAAAALTTSQPEKFGQALILQLL 61
Query: 81 CEAVAIYGLITAIVLSGQLEQYNEKSTDQAVISQNIFGGYLMFGAGLSVGLVNLFCGMAV 140
+YG + A ++ L ++ G GA L + LF G+A
Sbjct: 62 PGTQGLYGFVIAFLIFINLGS-----------DMSVVQGLNFLGASLPIAFTGLFSGIAQ 110
Query: 141 GIVGSGAALADAANSNLFVKILIVEIFGSAIGLFGLIVGIYMTSK 185
G V + A K +I + G ++ +
Sbjct: 111 GKVAAAGIQILAKKPEHATKGIIFAAMVETYAILGFVISFLLVLN 155
Score = 32.5 bits (74), Expect = 0.047
Identities = 13/75 (17%), Positives = 29/75 (38%)
Query: 122 MFGAGLSVGLVNLFCGMAVGIVGSGAALADAANSNLFVKILIVEIFGSAIGLFGLIVGIY 181
+ + + VG+ G AA + F + LI+++ GL+G ++
Sbjct: 16 VLAMATATIFSGIGSAKGVGMTGEAAAALTTSQPEKFGQALILQLLPGTQGLYGFVIAFL 75
Query: 182 MTSKVKMGNKVLRAL 196
+ + V++ L
Sbjct: 76 IFINLGSDMSVVQGL 90
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 40.0 bits (93), Expect = 4e-04
Identities = 52/312 (16%), Positives = 86/312 (27%), Gaps = 130/312 (41%)
Query: 2 VETGVSLFYTL-SGQGEKLSIGWF--LQ----TTTPYMWATLGIA---LSVALSVVGAAL 51
V G + + GQG + +F L+ T + + + LS + A
Sbjct: 149 VGEGNAQLVAIFGGQGN--TDDYFEELRDLYQTYHVLVGDLIKFSAETLSELIRTTLDAE 206
Query: 52 GIHTVGVSIIG---GGVKAPRIKTKNLISV----------------IFCEA--------- 83
+ T G++I+ P L+S+ + +
Sbjct: 207 KVFTQGLNILEWLENPSNTP--DKDYLLSIPISCPLIGVIQLAHYVVTAKLLGFTPGELR 264
Query: 84 -------VAIYGLITAIVLS-------------------------GQLEQYNEKSTDQAV 111
GL+TA+ ++ E Y S ++
Sbjct: 265 SYLKGATGHSQGLVTAVAIAETDSWESFFVSVRKAITVLFFIGVRCY-EAYPNTSLPPSI 323
Query: 112 ISQNIFGGY----LMFG-AGLS-------VGLVN--LFCGMAVGIVGSGAALADAANSNL 157
+ ++ M + L+ V N L G V I +L + A +
Sbjct: 324 LEDSLENNEGVPSPMLSISNLTQEQVQDYVNKTNSHLPAGKQVEI-----SLVNGAKN-- 376
Query: 158 FVKILIVEIFGSAIGLFGLIVGIYMTSKVKMGNKVLRALWASSGLYSTDDSAVITFGSMI 217
V + G L+GL N LR A SGL D S
Sbjct: 377 LV------VSGPPQSLYGL-------------NLTLRKAKAPSGL---DQS--------- 405
Query: 218 KKRPFSVSSMKP 229
+ PF S K
Sbjct: 406 -RIPF--SERKL 414
Score = 36.2 bits (83), Expect = 0.009
Identities = 27/151 (17%), Positives = 48/151 (31%), Gaps = 50/151 (33%)
Query: 17 EKLSIGW-FLQTTTP----YMW-ATLGIALSVA---LSVVGAALGI---HTV-G--VSII 61
KL FL +P + A+ I + +S + I T G + ++
Sbjct: 412 RKLKFSNRFLPVASPFHSHLLVPASDLINKDLVKNNVSFNAKDIQIPVYDTFDGSDLRVL 471
Query: 62 GGGVKAPRIKTKNLISVIFCEAVAIYGLITAIVLSGQLEQYN-EKSTDQAVISQNIFGGY 120
G + ++ ++ I V E +T + +I
Sbjct: 472 SGSI------SERIVDCIIRLPV------------------KWETTTQFK--ATHI---- 501
Query: 121 LMFGAGLSVGLVNLFC----GMAVGIVGSGA 147
L FG G + GL L G V ++ +G
Sbjct: 502 LDFGPGGASGLGVLTHRNKDGTGVRVIVAGT 532
Score = 32.3 bits (73), Expect = 0.13
Identities = 20/81 (24%), Positives = 29/81 (35%), Gaps = 23/81 (28%)
Query: 53 IHTVGVSIIGGGVKAPRIKTKNLISVIFCEAVAIYGLITAIVLSGQLEQYNEKST-DQAV 111
IH + ++ +KTK LI Y ITA +++ + S +AV
Sbjct: 101 IHALAAKLLQE-NDTTLVKTKELIK--------NY--ITARIMAKRPFDKKSNSALFRAV 149
Query: 112 ISQN-----IFGG------YL 121
N IFGG Y
Sbjct: 150 GEGNAQLVAIFGGQGNTDDYF 170
Score = 28.9 bits (64), Expect = 2.0
Identities = 29/164 (17%), Positives = 56/164 (34%), Gaps = 61/164 (37%)
Query: 31 YMWATLGIALSVALSVV---GAALGIHTVGVSIIGGGVKAPRIKTKNLISVIF------- 80
+ T G ++ L +V L IH GG K RI+ +N ++IF
Sbjct: 1652 HFKDTYGFSI---LDIVINNPVNLTIHF-------GGEKGKRIR-ENYSAMIFETIVDGK 1700
Query: 81 CEAVAIYGLI----TAIVLSGQLEQYNE-KSTDQ---AVISQNIF-----GGYL----MF 123
+ I+ I T+ + + + T Q ++ + F G + F
Sbjct: 1701 LKTEKIFKEINEHSTSYTFRSEKGLLSATQFT-QPALTLMEKAAFEDLKSKGLIPADATF 1759
Query: 124 GAGLSVG----LVNLFCGMAVGIVGSGA-ALADAANSNLFVKIL 162
AG S+G L ++ + ++ V+++
Sbjct: 1760 -AGHSLGEYAALA------SL----ADVMSIESL------VEVV 1786
>1wu0_A ATP synthase C chain; ATPase, membrane protein, hydrogen ION
transport, hydrolase; NMR {Bacillus SP}
Length = 72
Score = 32.7 bits (75), Expect = 0.012
Identities = 18/67 (26%), Positives = 32/67 (47%), Gaps = 4/67 (5%)
Query: 36 LGIALSVALSVVGAALGIHTVGVSIIGGGVK----APRIKTKNLISVIFCEAVAIYGLIT 91
L A++V L +GA +G + I G + P ++T I V EA+ I G++
Sbjct: 6 LAAAIAVGLGALGAGIGNGLIVSRTIEGIARQPELRPVLQTTMFIGVALVEALPIIGVVF 65
Query: 92 AIVLSGQ 98
+ + G+
Sbjct: 66 SFIYLGR 72
Score = 26.1 bits (58), Expect = 2.5
Identities = 13/71 (18%), Positives = 25/71 (35%), Gaps = 4/71 (5%)
Query: 119 GYLMFGAGLSVGLVNLFCGMAVGIVGSGAALADA----ANSNLFVKILIVEIFGSAIGLF 174
+ A ++VGL L G+ G++ S A L + I A+ +
Sbjct: 2 SLGVLAAAIAVGLGALGAGIGNGLIVSRTIEGIARQPELRPVLQTTMFIGVALVEALPII 61
Query: 175 GLIVGIYMTSK 185
G++ +
Sbjct: 62 GVVFSFIYLGR 72
>2xqu_A C15_RING, ATP synthase C chain; membrane protein, F1FO-ATP
synthase rotor, ION (PROT translocation; HET: FME CVM;
1.84A {Arthrospira platensis} PDB: 2xqs_A* 2xqt_A*
2wie_A* 2w5j_A
Length = 82
Score = 33.1 bits (76), Expect = 0.013
Identities = 21/75 (28%), Positives = 38/75 (50%), Gaps = 4/75 (5%)
Query: 25 LQTTTPYMWATLGIALSVALSVVGAALGIHTVGVSIIGGGVKAP----RIKTKNLISVIF 80
+++ + + AL+V + +G LG + G + P +I+ L+S+ F
Sbjct: 1 MESNLTTAASVIAAALAVGIGSIGPGLGQGQAAGQAVEGIARQPEAEGKIRGTLLLSLAF 60
Query: 81 CEAVAIYGLITAIVL 95
EA+ IYGL+ A+VL
Sbjct: 61 MEALTIYGLVVALVL 75
Score = 28.9 bits (65), Expect = 0.31
Identities = 16/73 (21%), Positives = 32/73 (43%), Gaps = 4/73 (5%)
Query: 114 QNIFGGYLMFGAGLSVGLVNLFCGMAVGIVGSGAALADA----ANSNLFVKILIVEIFGS 169
N+ + A L+VG+ ++ G+ G A A A + +L+ F
Sbjct: 3 SNLTTAASVIAAALAVGIGSIGPGLGQGQAAGQAVEGIARQPEAEGKIRGTLLLSLAFME 62
Query: 170 AIGLFGLIVGIYM 182
A+ ++GL+V + +
Sbjct: 63 ALTIYGLVVALVL 75
>2x2v_A ATP synthase subunit C; membrane protein, ION transport, ATP
synthesis, transmembran CF(0), membrane, transport,
C-ring rotor; HET: FME DPV; 2.50A {Bacillus
pseudofirmus OF4}
Length = 69
Score = 30.1 bits (68), Expect = 0.11
Identities = 16/64 (25%), Positives = 32/64 (50%), Gaps = 4/64 (6%)
Query: 36 LGIALSVALSVVGAALGIHTVGVSIIGGGVKAP----RIKTKNLISVIFCEAVAIYGLIT 91
LG A++ L+ V A+ + + + I G + P ++T I V EAV I ++
Sbjct: 4 LGAAIAAGLAAVAGAIAVAIIVKATIEGTTRQPELRGTLQTLMFIGVPLAEAVPIIAIVI 63
Query: 92 AIVL 95
++++
Sbjct: 64 SLLI 67
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 31.1 bits (69), Expect = 0.17
Identities = 10/19 (52%), Positives = 13/19 (68%), Gaps = 1/19 (5%)
Query: 191 KVLRALWASSGLYSTDDSA 209
+ L+ L AS LY+ DDSA
Sbjct: 20 QALKKLQASLKLYA-DDSA 37
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 30.2 bits (67), Expect = 0.77
Identities = 23/173 (13%), Positives = 51/173 (29%), Gaps = 42/173 (24%)
Query: 70 IKTKNLISVIFCEAVAIYGLITAIVLSGQLEQYNEKSTDQAVISQNIFGGYLMFGAGLSV 129
+ T+ V + A I+ S L D+ +++ YL
Sbjct: 270 LTTRF-KQVTDFLSAATTTHISLDHHSMTLTP------DE---VKSLLLKYL----DCRP 315
Query: 130 G-LVNLFCG---MAVGIVGSGAALADAANSNLFVKILIVEIFGSAI-------------G 172
L + I+ ++ D + K + + + I
Sbjct: 316 QDLPREVLTTNPRRLSIIA--ESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRK 373
Query: 173 LFGLIVGIYMTSKVKMGNKVLRALWASSGLYSTDDSAVITFG----SMIKKRP 221
+F + ++ S + +L +W D V+ S+++K+P
Sbjct: 374 MFDRLS-VFPPS-AHIPTILLSLIWFDV---IKSDVMVVVNKLHKYSLVEKQP 421
>1a91_A F1FO ATPase subunit C; membrane protein, hydrogen ION transport;
NMR {Escherichia coli} SCOP: f.17.1.1 PDB: 1c0v_A
1c17_A 1c99_A 1qo1_K 1aty_A 1l6t_A 1ijp_A
Length = 79
Score = 27.5 bits (61), Expect = 1.1
Identities = 13/64 (20%), Positives = 32/64 (50%), Gaps = 4/64 (6%)
Query: 36 LGIALSVALSVVGAALGIHTVGVSIIGGGVK----APRIKTKNLISVIFCEAVAIYGLIT 91
+ A+ + L+ +GAA+GI +G + G + P ++T+ I + +A+ + +
Sbjct: 11 MAAAVMMGLAAIGAAIGIGILGGKFLEGAARQPDLIPLLRTQFFIVMGLVDAIPMIAVGL 70
Query: 92 AIVL 95
+ +
Sbjct: 71 GLYV 74
>2xnd_J ATP synthase lipid-binding protein, mitochondrial; ATP
phosphorylase (H+ transporting), ATP synthesis, F1FO
ATP synthase, hydrolase, ION transport; HET: ANP; 3.50A
{Bos taurus}
Length = 72
Score = 25.8 bits (57), Expect = 3.3
Identities = 16/57 (28%), Positives = 28/57 (49%), Gaps = 4/57 (7%)
Query: 43 ALSVVGAALGIHTVGVSIIGGGVKAPRIKTKNLISVI----FCEAVAIYGLITAIVL 95
+ V G+ GI TV S+I G + P +K + I EA+ ++ L+ A ++
Sbjct: 14 TVGVAGSGAGIGTVFGSLIIGYARNPSLKQQLFSYAILGFALSEAMGLFCLMVAFLI 70
>4f4s_A ATP synthase subunit 9, mitochondrial; C10 ring, F1FO ATP
synthase, oligomycin, membr protein-antibiotic complex;
HET: FME EFO; 1.90A {Saccharomyces cerevisiae} PDB:
2wpd_J* 2xok_K* 3u2y_K* 3u32_K* 3ud0_K* 3zry_J* 3u2f_K*
Length = 76
Score = 25.5 bits (56), Expect = 5.0
Identities = 15/57 (26%), Positives = 27/57 (47%), Gaps = 4/57 (7%)
Query: 43 ALSVVGAALGIHTVGVSIIGGGVKAPRIKTKNLISVI----FCEAVAIYGLITAIVL 95
+ ++GA +GI V ++I G + P IK I EA ++ L+ + +L
Sbjct: 16 TIGLLGAGIGIAIVFAALINGVSRNPSIKDTVFPMAILGFALSEATGLFCLMVSFLL 72
>2wgm_A ATP synthase subunit C, sodium ION specific; F1FO-ATP synthase
rotor, sodium-motive force, cell inner membrane, CF(0),
membrane, transport; HET: F09; 2.35A {Ilyobacter
tartaricus} PDB: 1yce_A*
Length = 89
Score = 25.8 bits (57), Expect = 5.0
Identities = 16/78 (20%), Positives = 27/78 (34%), Gaps = 14/78 (17%)
Query: 32 MWATLGIALSVALSVVGAALGIHTVGVSIIGGGVKA--------------PRIKTKNLIS 77
M + +A S VGA + +G G A I + ++
Sbjct: 1 MDMLFAKTVVLAASAVGAGTAMIAGIGPGVGQGYAAGKAVESVARQPEAKGDIISTMVLG 60
Query: 78 VIFCEAVAIYGLITAIVL 95
E+ IY L+ A++L
Sbjct: 61 QAVAESTGIYSLVIALIL 78
>1a99_A POTF, putrescine-binding protein; transport, periplasmic putrescine
binding protein (POTF); 2.20A {Escherichia coli} SCOP:
c.94.1.1
Length = 344
Score = 26.5 bits (59), Expect = 9.2
Identities = 8/10 (80%), Positives = 8/10 (80%)
Query: 30 PYMWATLGIA 39
PYMWAT GI
Sbjct: 106 PYMWATTGIG 115
>3ttn_A Polyamine transport protein; polyamine binding protein, spermidine;
HET: SPD; 2.00A {Pseudomonas aeruginosa} PDB: 3ttl_A*
Length = 340
Score = 26.1 bits (58), Expect = 9.8
Identities = 6/10 (60%), Positives = 7/10 (70%)
Query: 30 PYMWATLGIA 39
PY+W T GI
Sbjct: 107 PYLWGTNGIG 116
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.321 0.137 0.388
Gapped
Lambda K H
0.267 0.0667 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 3,429,953
Number of extensions: 209095
Number of successful extensions: 385
Number of sequences better than 10.0: 1
Number of HSP's gapped: 372
Number of HSP's successfully gapped: 35
Length of query: 235
Length of database: 6,701,793
Length adjustment: 91
Effective length of query: 144
Effective length of database: 4,160,982
Effective search space: 599181408
Effective search space used: 599181408
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 56 (25.5 bits)