RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy15658
         (235 letters)



>d1c99a_ f.17.1.1 (A:) F1F0 ATP synthase subunit C {Escherichia coli
           [TaxId: 562]}
          Length = 79

 Score = 34.2 bits (79), Expect = 0.001
 Identities = 16/74 (21%), Positives = 30/74 (40%), Gaps = 4/74 (5%)

Query: 114 QNIFGGYLMFGAGLSVGLVNLFCGMAVGIVGSGAALADAAN----SNLFVKILIVEIFGS 169
           +N+    L   A + +GL  +   + +GI+G       A        L  +  IV     
Sbjct: 2   ENLNMDLLYMAAAVMMGLAAIGAAIGIGILGGKFLEGAARQPDLIPLLRTQFFIVMGLVD 61

Query: 170 AIGLFGLIVGIYMT 183
           AI +  + +G+Y+ 
Sbjct: 62  AIPMIAVGLGLYVM 75



 Score = 32.6 bits (75), Expect = 0.006
 Identities = 13/64 (20%), Positives = 32/64 (50%), Gaps = 4/64 (6%)

Query: 36 LGIALSVALSVVGAALGIHTVGVSIIGGGVK----APRIKTKNLISVIFCEAVAIYGLIT 91
          +  A+ + L+ +GAA+GI  +G   + G  +     P ++T+  I +   +A+ +  +  
Sbjct: 11 MAAAVMMGLAAIGAAIGIGILGGKFLEGAARQPDLIPLLRTQFFIVMGLVDAIPMIAVGL 70

Query: 92 AIVL 95
           + +
Sbjct: 71 GLYV 74


>d1oafa_ a.93.1.1 (A:) Ascorbate peroxidase {Soybean (Glycine max)
           [TaxId: 3847]}
          Length = 250

 Score = 25.8 bits (56), Expect = 4.6
 Identities = 9/46 (19%), Positives = 18/46 (39%)

Query: 187 KMGNKVLRALWASSGLYSTDDSAVITFGSMIKKRPFSVSSMKPLEK 232
           +    +LR  W S+G +         FG++      + S+   L+ 
Sbjct: 31  RCAPLMLRLAWHSAGTFDKGTKTGGPFGTIKHPAELAHSANNGLDI 76


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.321    0.137    0.388 

Gapped
Lambda     K      H
   0.267   0.0621    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 785,126
Number of extensions: 33216
Number of successful extensions: 70
Number of sequences better than 10.0: 1
Number of HSP's gapped: 67
Number of HSP's successfully gapped: 9
Length of query: 235
Length of database: 2,407,596
Length adjustment: 83
Effective length of query: 152
Effective length of database: 1,268,006
Effective search space: 192736912
Effective search space used: 192736912
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 51 (23.7 bits)