BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy15660
(178 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2DFS|A Chain A, 3-D Structure Of Myosin-V Inhibited State
pdb|2DFS|M Chain M, 3-D Structure Of Myosin-V Inhibited State
Length = 1080
Score = 137 bits (344), Expect = 4e-33, Method: Compositional matrix adjust.
Identities = 82/180 (45%), Positives = 100/180 (55%), Gaps = 44/180 (24%)
Query: 1 MRYFATVGGSQTETQVEKKVLAYSPIMEAIGNAKTIRNDNRSRFGKFTELHFNKHYNIIG 60
MRYFATV GS +E VE+KVLA +PIME+IG
Sbjct: 177 MRYFATVSGSASEANVEEKVLASNPIMESIG----------------------------- 207
Query: 61 ASMRTCHFAIGNAKTIRNDNSSRFGKFTELHFNKHYNIIGASMRTYLLEKSRVVFQAPNE 120
NAKT RNDNSSRFGK+ E+ F+K Y IIGA+MRTYLLEKSRVVFQA E
Sbjct: 208 -----------NAKTTRNDNSSRFGKYIEIGFDKRYRIIGANMRTYLLEKSRVVFQAEEE 256
Query: 121 RNYHVFYQLC--CARDKYPYLLLDEPDSFQYIRE--CCEIPGVNDEEGFEETQQAFVTLG 176
RNYH+FYQLC A ++ L L + F Y ++ I G++D + T+QA LG
Sbjct: 257 RNYHIFYQLCASAALPEFKTLRLGNANYFHYTKQGGSPVIDGIDDAKEMVNTRQACTLLG 316
>pdb|1OE9|A Chain A, Crystal Structure Of Myosin V Motor With Essential Light
Chain - Nucleotide-Free
pdb|1W7I|A Chain A, Crystal Structure Of Myosin V Motor Without Nucleotide
Soaked In 10 Mm Mgadp
pdb|1W7J|A Chain A, Crystal Structure Of Myosin V Motor With Essential Light
Chain + Adp-Befx - Near Rigor
Length = 795
Score = 136 bits (342), Expect = 7e-33, Method: Compositional matrix adjust.
Identities = 82/180 (45%), Positives = 100/180 (55%), Gaps = 44/180 (24%)
Query: 1 MRYFATVGGSQTETQVEKKVLAYSPIMEAIGNAKTIRNDNRSRFGKFTELHFNKHYNIIG 60
MRYFATV GS +E VE+KVLA +PIME+IG
Sbjct: 177 MRYFATVSGSASEANVEEKVLASNPIMESIG----------------------------- 207
Query: 61 ASMRTCHFAIGNAKTIRNDNSSRFGKFTELHFNKHYNIIGASMRTYLLEKSRVVFQAPNE 120
NAKT RNDNSSRFGK+ E+ F+K Y IIGA+MRTYLLEKSRVVFQA E
Sbjct: 208 -----------NAKTTRNDNSSRFGKYIEIGFDKRYRIIGANMRTYLLEKSRVVFQAEEE 256
Query: 121 RNYHVFYQLC--CARDKYPYLLLDEPDSFQYIRECCE--IPGVNDEEGFEETQQAFVTLG 176
RNYH+FYQLC A ++ L L + F Y ++ I G++D + T+QA LG
Sbjct: 257 RNYHIFYQLCASAALPEFKTLRLGNANYFHYTKQGGSPVIDGIDDAKEMVNTRQACTLLG 316
>pdb|1W8J|A Chain A, Crystal Structure Of Myosin V Motor Domain -
Nucleotide-Free
pdb|1W8J|B Chain B, Crystal Structure Of Myosin V Motor Domain -
Nucleotide-Free
pdb|1W8J|C Chain C, Crystal Structure Of Myosin V Motor Domain -
Nucleotide-Free
pdb|1W8J|D Chain D, Crystal Structure Of Myosin V Motor Domain -
Nucleotide-Free
Length = 766
Score = 135 bits (341), Expect = 9e-33, Method: Compositional matrix adjust.
Identities = 82/180 (45%), Positives = 100/180 (55%), Gaps = 44/180 (24%)
Query: 1 MRYFATVGGSQTETQVEKKVLAYSPIMEAIGNAKTIRNDNRSRFGKFTELHFNKHYNIIG 60
MRYFATV GS +E VE+KVLA +PIME+IG
Sbjct: 177 MRYFATVSGSASEANVEEKVLASNPIMESIG----------------------------- 207
Query: 61 ASMRTCHFAIGNAKTIRNDNSSRFGKFTELHFNKHYNIIGASMRTYLLEKSRVVFQAPNE 120
NAKT RNDNSSRFGK+ E+ F+K Y IIGA+MRTYLLEKSRVVFQA E
Sbjct: 208 -----------NAKTTRNDNSSRFGKYIEIGFDKRYRIIGANMRTYLLEKSRVVFQAEEE 256
Query: 121 RNYHVFYQLC--CARDKYPYLLLDEPDSFQYIRE--CCEIPGVNDEEGFEETQQAFVTLG 176
RNYH+FYQLC A ++ L L + F Y ++ I G++D + T+QA LG
Sbjct: 257 RNYHIFYQLCASAALPEFKTLRLGNANYFHYTKQGGSPVIDGIDDAKEMVNTRQACTLLG 316
>pdb|1MMN|A Chain A, X-Ray Structures Of The Mgadp, Mgatpgammas, And Mgamppnp
Complexes Of The Dictyostelium Discoideum Myosin Motor
Domain
Length = 762
Score = 114 bits (286), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 61/112 (54%), Positives = 78/112 (69%), Gaps = 4/112 (3%)
Query: 69 AIGNAKTIRNDNSSRFGKFTELHFNKHYNIIGASMRTYLLEKSRVVFQAPNERNYHVFYQ 128
A GNAKT RN+NSSRFGKF E+ FN I GAS+++YLLEKSRVVFQ+ ERNYH+FYQ
Sbjct: 224 AFGNAKTTRNNNSSRFGKFIEIQFNNAGFISGASIQSYLLEKSRVVFQSTTERNYHIFYQ 283
Query: 129 LCCA--RDKYPYLLLDEPDSFQYIRE--CCEIPGVNDEEGFEETQQAFVTLG 176
L ++ L L P+SF Y+ + C +I GV+DEE F+ T+QA +G
Sbjct: 284 LLAGATAEEKKALHLAGPESFNYLNQSGCVDIKGVSDEEEFKITRQAMDIVG 335
>pdb|1LVK|A Chain A, X-Ray Crystal Structure Of The Mg (Dot) 2'(3')-O-(N-
Methylanthraniloyl) Nucleotide Bound To Dictyostelium
Discoideum Myosin Motor Domain
Length = 762
Score = 114 bits (284), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 60/112 (53%), Positives = 79/112 (70%), Gaps = 4/112 (3%)
Query: 69 AIGNAKTIRNDNSSRFGKFTELHFNKHYNIIGASMRTYLLEKSRVVFQAPNERNYHVFYQ 128
A GNAKT RN+NSSRFGKF E+ FN I GAS+++YLLEKSRVVFQ+ +ERNYH+FYQ
Sbjct: 224 AFGNAKTTRNNNSSRFGKFIEIQFNNAGFISGASIQSYLLEKSRVVFQSTSERNYHIFYQ 283
Query: 129 LCCA--RDKYPYLLLDEPDSFQYIRE--CCEIPGVNDEEGFEETQQAFVTLG 176
L ++ L L P+SF Y+ + C +I GV+DE+ F+ T+QA +G
Sbjct: 284 LLAGATAEEKKALHLAGPESFNYLNQSGCVDIKGVSDEDEFKITRQAMDIVG 335
>pdb|1MMG|A Chain A, X-Ray Structures Of The Mgadp, Mgatpgammas, And Mgamppnp
Complexes Of The Dictyostelium Discoideum Myosin Motor
Domain
Length = 762
Score = 113 bits (283), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 60/112 (53%), Positives = 78/112 (69%), Gaps = 4/112 (3%)
Query: 69 AIGNAKTIRNDNSSRFGKFTELHFNKHYNIIGASMRTYLLEKSRVVFQAPNERNYHVFYQ 128
A GNAKT RN+NSSRFGKF E+ FN I GAS+++YLLEKSRVVFQ+ ERNYH+FYQ
Sbjct: 224 AFGNAKTTRNNNSSRFGKFIEIQFNNAGFISGASIQSYLLEKSRVVFQSTTERNYHIFYQ 283
Query: 129 LCCA--RDKYPYLLLDEPDSFQYIRE--CCEIPGVNDEEGFEETQQAFVTLG 176
L ++ L L P+SF Y+ + C +I GV+DE+ F+ T+QA +G
Sbjct: 284 LLAGATAEEKKALHLAGPESFNYLNQSGCVDIKGVSDEDEFKITRQAMDIVG 335
>pdb|1MMD|A Chain A, Truncated Head Of Myosin From Dictyostelium Discoideum
Complexed With Mgadp-Bef3
pdb|1MND|A Chain A, Truncated Head Of Myosin From Dictyostelium Discoideum
Complexed With Mgadp-Alf4
pdb|1MNE|A Chain A, Truncated Head Of Myosin From Dictyostelium Discoideum
Complexed With Mg-Pyrophosphate
pdb|1VOM|A Chain A, Complex Between Dictyostelium Myosin And Mgadp And
Vanadate At 1.9a Resolution
Length = 762
Score = 113 bits (283), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 60/112 (53%), Positives = 78/112 (69%), Gaps = 4/112 (3%)
Query: 69 AIGNAKTIRNDNSSRFGKFTELHFNKHYNIIGASMRTYLLEKSRVVFQAPNERNYHVFYQ 128
A GNAKT RN+NSSRFGKF E+ FN I GAS+++YLLEKSRVVFQ+ ERNYH+FYQ
Sbjct: 224 AFGNAKTTRNNNSSRFGKFIEIQFNNAGFISGASIQSYLLEKSRVVFQSETERNYHIFYQ 283
Query: 129 LCCA--RDKYPYLLLDEPDSFQYIRE--CCEIPGVNDEEGFEETQQAFVTLG 176
L ++ L L P+SF Y+ + C +I GV+DE+ F+ T+QA +G
Sbjct: 284 LLAGATAEEKKALHLAGPESFNYLNQSGCVDIKGVSDEDEFKITRQAMDIVG 335
>pdb|2X9H|A Chain A, Crystal Structure Of Myosin-2 Motor Domain In Complex With
Adp-Metavanadate And Pentachlorocarbazole
Length = 695
Score = 113 bits (282), Expect = 7e-26, Method: Compositional matrix adjust.
Identities = 60/112 (53%), Positives = 77/112 (68%), Gaps = 4/112 (3%)
Query: 69 AIGNAKTIRNDNSSRFGKFTELHFNKHYNIIGASMRTYLLEKSRVVFQAPNERNYHVFYQ 128
A GNAKT RN+NSSRFGKF E+ FN I GAS+++YLLEKSRVVFQ+ ERNYH+FYQ
Sbjct: 223 AFGNAKTTRNNNSSRFGKFIEIQFNSAGFISGASIQSYLLEKSRVVFQSETERNYHIFYQ 282
Query: 129 LCCA--RDKYPYLLLDEPDSFQYIRE--CCEIPGVNDEEGFEETQQAFVTLG 176
L ++ L L P+SF Y+ + C +I GV+D E F+ T+QA +G
Sbjct: 283 LLAGATAEEKKALHLAGPESFNYLNQSGCVDIKGVSDSEEFKITRQAMDIVG 334
>pdb|1YV3|A Chain A, The Structural Basis Of Blebbistatin Inhibition And
Specificity For Myosin Ii
pdb|3BZ7|A Chain A, Crystal Structures Of (S)-(-)-Blebbistatin Analogs Bound
To Dictyostelium Discoideum Myosin Ii
pdb|3BZ8|A Chain A, Crystal Structures Of (S)-(-)-Blebbistatin Analogs Bound
To Dictyostelium Discoideum Myosin Ii
pdb|3BZ9|A Chain A, Crystal Structures Of (S)-(-)-Blebbistatin Analogs Bound
To Dictyostelium Discoideum Myosin Ii
Length = 762
Score = 113 bits (282), Expect = 7e-26, Method: Compositional matrix adjust.
Identities = 60/112 (53%), Positives = 77/112 (68%), Gaps = 4/112 (3%)
Query: 69 AIGNAKTIRNDNSSRFGKFTELHFNKHYNIIGASMRTYLLEKSRVVFQAPNERNYHVFYQ 128
A GNAKT RN+NSSRFGKF E+ FN I GAS+++YLLEKSRVVFQ+ ERNYH+FYQ
Sbjct: 224 AFGNAKTTRNNNSSRFGKFIEIQFNSAGFISGASIQSYLLEKSRVVFQSETERNYHIFYQ 283
Query: 129 LCCA--RDKYPYLLLDEPDSFQYIRE--CCEIPGVNDEEGFEETQQAFVTLG 176
L ++ L L P+SF Y+ + C +I GV+D E F+ T+QA +G
Sbjct: 284 LLAGATAEEKKALHLAGPESFNYLNQSGCVDIKGVSDSEEFKITRQAMDIVG 335
>pdb|1JWY|A Chain A, Crystal Structure Of The Dynamin A Gtpase Domain Complexed
With Gdp, Determined As Myosin Fusion
pdb|1JX2|A Chain A, Crystal Structure Of The Nucleotide-Free Dynamin A Gtpase
Domain, Determined As Myosin Fusion
Length = 776
Score = 113 bits (282), Expect = 7e-26, Method: Compositional matrix adjust.
Identities = 60/112 (53%), Positives = 77/112 (68%), Gaps = 4/112 (3%)
Query: 69 AIGNAKTIRNDNSSRFGKFTELHFNKHYNIIGASMRTYLLEKSRVVFQAPNERNYHVFYQ 128
A GNAKT RN+NSSRFGKF E+ FN I GAS+++YLLEKSRVVFQ+ ERNYH+FYQ
Sbjct: 235 AFGNAKTTRNNNSSRFGKFIEIQFNSAGFISGASIQSYLLEKSRVVFQSETERNYHIFYQ 294
Query: 129 LCCA--RDKYPYLLLDEPDSFQYIRE--CCEIPGVNDEEGFEETQQAFVTLG 176
L ++ L L P+SF Y+ + C +I GV+D E F+ T+QA +G
Sbjct: 295 LLAGATAEEKKALHLAGPESFNYLNQSGCVDIKGVSDSEEFKITRQAMDIVG 346
>pdb|3MKD|A Chain A, Crystal Structure Of Myosin-2 Dictyostelium Discoideum
Motor Domain S456y Mutant In Complex With
Adp-Orthovanadate
Length = 692
Score = 113 bits (282), Expect = 7e-26, Method: Compositional matrix adjust.
Identities = 60/112 (53%), Positives = 77/112 (68%), Gaps = 4/112 (3%)
Query: 69 AIGNAKTIRNDNSSRFGKFTELHFNKHYNIIGASMRTYLLEKSRVVFQAPNERNYHVFYQ 128
A GNAKT RN+NSSRFGKF E+ FN I GAS+++YLLEKSRVVFQ+ ERNYH+FYQ
Sbjct: 223 AFGNAKTTRNNNSSRFGKFIEIQFNSAGFISGASIQSYLLEKSRVVFQSETERNYHIFYQ 282
Query: 129 LCCA--RDKYPYLLLDEPDSFQYIRE--CCEIPGVNDEEGFEETQQAFVTLG 176
L ++ L L P+SF Y+ + C +I GV+D E F+ T+QA +G
Sbjct: 283 LLAGATAEEKKALHLAGPESFNYLNQSGCVDIKGVSDSEEFKITRQAMDIVG 334
>pdb|2AKA|A Chain A, Structure Of The Nucleotide-Free Myosin Ii Motor Domain
From Dictyostelium Discoideum Fused To The Gtpase Domain
Of Dynamin 1 From Rattus Norvegicus
Length = 776
Score = 112 bits (281), Expect = 7e-26, Method: Compositional matrix adjust.
Identities = 60/112 (53%), Positives = 77/112 (68%), Gaps = 4/112 (3%)
Query: 69 AIGNAKTIRNDNSSRFGKFTELHFNKHYNIIGASMRTYLLEKSRVVFQAPNERNYHVFYQ 128
A GNAKT RN+NSSRFGKF E+ FN I GAS+++YLLEKSRVVFQ+ ERNYH+FYQ
Sbjct: 235 AFGNAKTTRNNNSSRFGKFIEIQFNSAGFISGASIQSYLLEKSRVVFQSETERNYHIFYQ 294
Query: 129 LCCA--RDKYPYLLLDEPDSFQYIRE--CCEIPGVNDEEGFEETQQAFVTLG 176
L ++ L L P+SF Y+ + C +I GV+D E F+ T+QA +G
Sbjct: 295 LLAGATAEEKKALHLAGPESFNYLNQSGCVDIKGVSDSEEFKITRQAMDIVG 346
>pdb|2Y0R|X Chain X, Structural Basis For The Allosteric Interference Of Myosin
Function By Mutants G680a And G680v Of Dictyostelium
Myosin-2
pdb|2Y8I|X Chain X, Structural Basis For The Allosteric Interference Of Myosin
Function By Mutants G680a And G680v Of Dictyostelium
Myosin-2
Length = 758
Score = 112 bits (281), Expect = 8e-26, Method: Compositional matrix adjust.
Identities = 60/112 (53%), Positives = 77/112 (68%), Gaps = 4/112 (3%)
Query: 69 AIGNAKTIRNDNSSRFGKFTELHFNKHYNIIGASMRTYLLEKSRVVFQAPNERNYHVFYQ 128
A GNAKT RN+NSSRFGKF E+ FN I GAS+++YLLEKSRVVFQ+ ERNYH+FYQ
Sbjct: 223 AFGNAKTTRNNNSSRFGKFIEIQFNSAGFISGASIQSYLLEKSRVVFQSETERNYHIFYQ 282
Query: 129 LCCA--RDKYPYLLLDEPDSFQYIRE--CCEIPGVNDEEGFEETQQAFVTLG 176
L ++ L L P+SF Y+ + C +I GV+D E F+ T+QA +G
Sbjct: 283 LLAGATAEEKKALHLAGPESFNYLNQSGCVDIKGVSDSEEFKITRQAMDIVG 334
>pdb|2Y9E|X Chain X, Structural Basis For The Allosteric Interference Of Myosin
Function By Mutants G680a And G680v Of Dictyostelium
Myosin-2
Length = 758
Score = 112 bits (281), Expect = 8e-26, Method: Compositional matrix adjust.
Identities = 60/112 (53%), Positives = 77/112 (68%), Gaps = 4/112 (3%)
Query: 69 AIGNAKTIRNDNSSRFGKFTELHFNKHYNIIGASMRTYLLEKSRVVFQAPNERNYHVFYQ 128
A GNAKT RN+NSSRFGKF E+ FN I GAS+++YLLEKSRVVFQ+ ERNYH+FYQ
Sbjct: 223 AFGNAKTTRNNNSSRFGKFIEIQFNSAGFISGASIQSYLLEKSRVVFQSETERNYHIFYQ 282
Query: 129 LCCA--RDKYPYLLLDEPDSFQYIRE--CCEIPGVNDEEGFEETQQAFVTLG 176
L ++ L L P+SF Y+ + C +I GV+D E F+ T+QA +G
Sbjct: 283 LLAGATAEEKKALHLAGPESFNYLNQSGCVDIKGVSDSEEFKITRQAMDIVG 334
>pdb|1W9L|A Chain A, Myosin Ii Dictyostelium Discoideum Motor Domain S456e
Bound With Mgadp-Alf4
Length = 770
Score = 112 bits (281), Expect = 8e-26, Method: Compositional matrix adjust.
Identities = 60/112 (53%), Positives = 77/112 (68%), Gaps = 4/112 (3%)
Query: 69 AIGNAKTIRNDNSSRFGKFTELHFNKHYNIIGASMRTYLLEKSRVVFQAPNERNYHVFYQ 128
A GNAKT RN+NSSRFGKF E+ FN I GAS+++YLLEKSRVVFQ+ ERNYH+FYQ
Sbjct: 224 AFGNAKTTRNNNSSRFGKFIEIQFNSAGFISGASIQSYLLEKSRVVFQSETERNYHIFYQ 283
Query: 129 LCCA--RDKYPYLLLDEPDSFQYIRE--CCEIPGVNDEEGFEETQQAFVTLG 176
L ++ L L P+SF Y+ + C +I GV+D E F+ T+QA +G
Sbjct: 284 LLAGATAEEKKALHLAGPESFNYLNQSGCVDIKGVSDSEEFKITRQAMDIVG 335
>pdb|1W9I|A Chain A, Myosin Ii Dictyostelium Discoideum Motor Domain S456y
Bound With Mgadp-Befx
Length = 770
Score = 112 bits (281), Expect = 8e-26, Method: Compositional matrix adjust.
Identities = 60/112 (53%), Positives = 77/112 (68%), Gaps = 4/112 (3%)
Query: 69 AIGNAKTIRNDNSSRFGKFTELHFNKHYNIIGASMRTYLLEKSRVVFQAPNERNYHVFYQ 128
A GNAKT RN+NSSRFGKF E+ FN I GAS+++YLLEKSRVVFQ+ ERNYH+FYQ
Sbjct: 224 AFGNAKTTRNNNSSRFGKFIEIQFNSAGFISGASIQSYLLEKSRVVFQSETERNYHIFYQ 283
Query: 129 LCCA--RDKYPYLLLDEPDSFQYIRE--CCEIPGVNDEEGFEETQQAFVTLG 176
L ++ L L P+SF Y+ + C +I GV+D E F+ T+QA +G
Sbjct: 284 LLAGATAEEKKALHLAGPESFNYLNQSGCVDIKGVSDSEEFKITRQAMDIVG 335
>pdb|1W9J|A Chain A, Myosin Ii Dictyostelium Discoideum Motor Domain S456y
Bound With Mgadp-Alf4
Length = 770
Score = 112 bits (281), Expect = 8e-26, Method: Compositional matrix adjust.
Identities = 60/112 (53%), Positives = 77/112 (68%), Gaps = 4/112 (3%)
Query: 69 AIGNAKTIRNDNSSRFGKFTELHFNKHYNIIGASMRTYLLEKSRVVFQAPNERNYHVFYQ 128
A GNAKT RN+NSSRFGKF E+ FN I GAS+++YLLEKSRVVFQ+ ERNYH+FYQ
Sbjct: 224 AFGNAKTTRNNNSSRFGKFIEIQFNSAGFISGASIQSYLLEKSRVVFQSETERNYHIFYQ 283
Query: 129 LCCA--RDKYPYLLLDEPDSFQYIRE--CCEIPGVNDEEGFEETQQAFVTLG 176
L ++ L L P+SF Y+ + C +I GV+D E F+ T+QA +G
Sbjct: 284 LLAGATAEEKKALHLAGPESFNYLNQSGCVDIKGVSDSEEFKITRQAMDIVG 335
>pdb|1W9K|A Chain A, Dictyostelium Discoideum Myosin Ii Motor Domain S456e With
Bound Mgadp-Befx
Length = 770
Score = 112 bits (281), Expect = 8e-26, Method: Compositional matrix adjust.
Identities = 60/112 (53%), Positives = 77/112 (68%), Gaps = 4/112 (3%)
Query: 69 AIGNAKTIRNDNSSRFGKFTELHFNKHYNIIGASMRTYLLEKSRVVFQAPNERNYHVFYQ 128
A GNAKT RN+NSSRFGKF E+ FN I GAS+++YLLEKSRVVFQ+ ERNYH+FYQ
Sbjct: 224 AFGNAKTTRNNNSSRFGKFIEIQFNSAGFISGASIQSYLLEKSRVVFQSETERNYHIFYQ 283
Query: 129 LCCA--RDKYPYLLLDEPDSFQYIRE--CCEIPGVNDEEGFEETQQAFVTLG 176
L ++ L L P+SF Y+ + C +I GV+D E F+ T+QA +G
Sbjct: 284 LLAGATAEEKKALHLAGPESFNYLNQSGCVDIKGVSDSEEFKITRQAMDIVG 335
>pdb|2JHR|A Chain A, Crystal Structure Of Myosin-2 Motor Domain In Complex With
Adp-Metavanadate And Pentabromopseudilin
pdb|2JJ9|A Chain A, Crystal Structure Of Myosin-2 In Complex With Adp-
Metavanadate
pdb|3MJX|A Chain A, Crystal Structure Of Myosin-2 Motor Domain In Complex With
Adp- Metavanadate And Blebbistatin
Length = 788
Score = 112 bits (281), Expect = 8e-26, Method: Compositional matrix adjust.
Identities = 60/112 (53%), Positives = 77/112 (68%), Gaps = 4/112 (3%)
Query: 69 AIGNAKTIRNDNSSRFGKFTELHFNKHYNIIGASMRTYLLEKSRVVFQAPNERNYHVFYQ 128
A GNAKT RN+NSSRFGKF E+ FN I GAS+++YLLEKSRVVFQ+ ERNYH+FYQ
Sbjct: 235 AFGNAKTTRNNNSSRFGKFIEIQFNSAGFISGASIQSYLLEKSRVVFQSETERNYHIFYQ 294
Query: 129 LCCA--RDKYPYLLLDEPDSFQYIRE--CCEIPGVNDEEGFEETQQAFVTLG 176
L ++ L L P+SF Y+ + C +I GV+D E F+ T+QA +G
Sbjct: 295 LLAGATAEEKKALHLAGPESFNYLNQSGCVDIKGVSDSEEFKITRQAMDIVG 346
>pdb|1FMV|A Chain A, Crystal Structure Of The Apo Motor Domain Of
Dictyostellium Myosin Ii
pdb|1FMW|A Chain A, Crystal Structure Of The Mgatp Complex For The Motor
Domain Of Dictyostelium Myosin Ii
Length = 761
Score = 112 bits (281), Expect = 9e-26, Method: Compositional matrix adjust.
Identities = 60/112 (53%), Positives = 77/112 (68%), Gaps = 4/112 (3%)
Query: 69 AIGNAKTIRNDNSSRFGKFTELHFNKHYNIIGASMRTYLLEKSRVVFQAPNERNYHVFYQ 128
A GNAKT RN+NSSRFGKF E+ FN I GAS+++YLLEKSRVVFQ+ ERNYH+FYQ
Sbjct: 224 AFGNAKTTRNNNSSRFGKFIEIQFNNAGFISGASIQSYLLEKSRVVFQSETERNYHIFYQ 283
Query: 129 LCCA--RDKYPYLLLDEPDSFQYIRE--CCEIPGVNDEEGFEETQQAFVTLG 176
L ++ L L P+SF Y+ + C +I GV+D E F+ T+QA +G
Sbjct: 284 LLAGATAEEKKALHLAGPESFNYLNQSGCVDIKGVSDSEEFKITRQAMDIVG 335
>pdb|1D0X|A Chain A, Dictyostelium Myosin S1dc (Motor Domain Fragment)
Complexed With M-Nitrophenyl Aminoethyldiphosphate
Beryllium Trifluoride.
pdb|1D0Y|A Chain A, Dictyostelium Myosin S1dc (Motor Domain Fragment)
Complexed With O-Nitrophenyl Aminoethyldiphosphate
Beryllium Fluoride.
pdb|1D0Z|A Chain A, Dictyostelium Myosin S1dc (Motor Domain Fragment)
Complexed With P-Nitrophenyl Aminoethyldiphosphate
Beryllium Trifluoride.
pdb|1D1A|A Chain A, Dictyostelium Myosin S1dc (Motor Domain Fragment)
Complexed With O,P-Dinitrophenyl Aminoethyldiphosphate
Beryllium Trifluoride.
pdb|1D1B|A Chain A, Dictyostelium Myosin S1dc (Motor Domain Fragment)
Complexed With O,P-Dinitrophenyl Aminopropyldiphosphate
Beryllium Trifluoride.
pdb|1D1C|A Chain A, Dictyostelium Myosin S1dc (Motor Domain Fragment)
Complexed With N-Methyl-O-Nitrophenyl
Aminoethyldiphosphate Beryllium Trifluoride
Length = 761
Score = 112 bits (281), Expect = 9e-26, Method: Compositional matrix adjust.
Identities = 60/112 (53%), Positives = 77/112 (68%), Gaps = 4/112 (3%)
Query: 69 AIGNAKTIRNDNSSRFGKFTELHFNKHYNIIGASMRTYLLEKSRVVFQAPNERNYHVFYQ 128
A GNAKT RN+NSSRFGKF E+ FN I GAS+++YLLEKSRVVFQ+ ERNYH+FYQ
Sbjct: 224 AFGNAKTTRNNNSSRFGKFIEIQFNNAGFISGASIQSYLLEKSRVVFQSETERNYHIFYQ 283
Query: 129 LCCA--RDKYPYLLLDEPDSFQYIRE--CCEIPGVNDEEGFEETQQAFVTLG 176
L ++ L L P+SF Y+ + C +I GV+D E F+ T+QA +G
Sbjct: 284 LLAGATAEEKKALHLAGPESFNYLNQSGCVDIKGVSDSEEFKITRQAMDIVG 335
>pdb|3MNQ|A Chain A, Crystal Structure Of Myosin-2 Motor Domain In Complex With
Adp- Metavanadate And Resveratrol
Length = 788
Score = 112 bits (281), Expect = 9e-26, Method: Compositional matrix adjust.
Identities = 60/112 (53%), Positives = 77/112 (68%), Gaps = 4/112 (3%)
Query: 69 AIGNAKTIRNDNSSRFGKFTELHFNKHYNIIGASMRTYLLEKSRVVFQAPNERNYHVFYQ 128
A GNAKT RN+NSSRFGKF E+ FN I GAS+++YLLEKSRVVFQ+ ERNYH+FYQ
Sbjct: 235 AFGNAKTTRNNNSSRFGKFIEIQFNSAGFISGASIQSYLLEKSRVVFQSETERNYHIFYQ 294
Query: 129 LCCA--RDKYPYLLLDEPDSFQYIRE--CCEIPGVNDEEGFEETQQAFVTLG 176
L ++ L L P+SF Y+ + C +I GV+D E F+ T+QA +G
Sbjct: 295 LLAGATAEEKKALHLAGPESFNYLNQSGCVDIKGVSDSEEFKITRQAMDIVG 346
>pdb|1MMA|A Chain A, X-Ray Structures Of The Mgadp, Mgatpgammas, And Mgamppnp
Complexes Of The Dictyostelium Discoideum Myosin Motor
Domain
Length = 762
Score = 112 bits (281), Expect = 9e-26, Method: Compositional matrix adjust.
Identities = 60/112 (53%), Positives = 77/112 (68%), Gaps = 4/112 (3%)
Query: 69 AIGNAKTIRNDNSSRFGKFTELHFNKHYNIIGASMRTYLLEKSRVVFQAPNERNYHVFYQ 128
A GNAKT RN+NSSRFGKF E+ FN I GAS+++YLLEKSRVVFQ+ ERNYH+FYQ
Sbjct: 224 AFGNAKTTRNNNSSRFGKFIEIQFNNAGFISGASIQSYLLEKSRVVFQSETERNYHIFYQ 283
Query: 129 LCCA--RDKYPYLLLDEPDSFQYIRE--CCEIPGVNDEEGFEETQQAFVTLG 176
L ++ L L P+SF Y+ + C +I GV+D E F+ T+QA +G
Sbjct: 284 LLAGATAEEKKALHLAGPESFNYLNQSGCVDIKGVSDSEEFKITRQAMDIVG 335
>pdb|2XO8|A Chain A, Crystal Structure Of Myosin-2 In Complex With
Tribromodichloropseudilin
Length = 776
Score = 112 bits (281), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 60/112 (53%), Positives = 77/112 (68%), Gaps = 4/112 (3%)
Query: 69 AIGNAKTIRNDNSSRFGKFTELHFNKHYNIIGASMRTYLLEKSRVVFQAPNERNYHVFYQ 128
A GNAKT RN+NSSRFGKF E+ FN I GAS+++YLLEKSRVVFQ+ ERNYH+FYQ
Sbjct: 223 AFGNAKTTRNNNSSRFGKFIEIQFNSAGFISGASIQSYLLEKSRVVFQSETERNYHIFYQ 282
Query: 129 LCCA--RDKYPYLLLDEPDSFQYIRE--CCEIPGVNDEEGFEETQQAFVTLG 176
L ++ L L P+SF Y+ + C +I GV+D E F+ T+QA +G
Sbjct: 283 LLAGATAEEKKALHLAGPESFNYLNQSGCVDIKGVSDSEEFKITRQAMDIVG 334
>pdb|2XEL|A Chain A, Molecular Mechanism Of Pentachloropseudilin Mediated
Inhibition Of Myosin Motor Activity
pdb|4AE3|A Chain A, Crystal Structure Of Ammosamide 272:myosin-2 Motor Domain
Complex
Length = 776
Score = 112 bits (281), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 60/112 (53%), Positives = 77/112 (68%), Gaps = 4/112 (3%)
Query: 69 AIGNAKTIRNDNSSRFGKFTELHFNKHYNIIGASMRTYLLEKSRVVFQAPNERNYHVFYQ 128
A GNAKT RN+NSSRFGKF E+ FN I GAS+++YLLEKSRVVFQ+ ERNYH+FYQ
Sbjct: 223 AFGNAKTTRNNNSSRFGKFIEIQFNSAGFISGASIQSYLLEKSRVVFQSETERNYHIFYQ 282
Query: 129 LCCA--RDKYPYLLLDEPDSFQYIRE--CCEIPGVNDEEGFEETQQAFVTLG 176
L ++ L L P+SF Y+ + C +I GV+D E F+ T+QA +G
Sbjct: 283 LLAGATAEEKKALHLAGPESFNYLNQSGCVDIKGVSDSEEFKITRQAMDIVG 334
>pdb|3MYH|X Chain X, Insights Into The Importance Of Hydrogen Bonding In The
Gamma- Phosphate Binding Pocket Of Myosin: Structural
And Functional Studies Of Ser236
pdb|3MYK|X Chain X, Insights Into The Importance Of Hydrogen Bonding In The
Gamma- Phosphate Binding Pocket Of Myosin: Structural
And Functional Studies Of Ser236
pdb|3MYL|X Chain X, Insights Into The Importance Of Hydrogen Bonding In The
Gamma- Phosphate Binding Pocket Of Myosin: Structural
And Functional Studies Of Ser236
Length = 762
Score = 112 bits (279), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 59/112 (52%), Positives = 77/112 (68%), Gaps = 4/112 (3%)
Query: 69 AIGNAKTIRNDNSSRFGKFTELHFNKHYNIIGASMRTYLLEKSRVVFQAPNERNYHVFYQ 128
A GNAKT RN+N+SRFGKF E+ FN I GAS+++YLLEKSRVVFQ+ ERNYH+FYQ
Sbjct: 224 AFGNAKTTRNNNASRFGKFIEIQFNSAGFISGASIQSYLLEKSRVVFQSETERNYHIFYQ 283
Query: 129 LCCA--RDKYPYLLLDEPDSFQYIRE--CCEIPGVNDEEGFEETQQAFVTLG 176
L ++ L L P+SF Y+ + C +I GV+D E F+ T+QA +G
Sbjct: 284 LLAGATAEEKKALHLAGPESFNYLNQSGCVDIKGVSDSEEFKITRQAMDIVG 335
>pdb|1G8X|A Chain A, Structure Of A Genetically Engineered Molecular Motor
pdb|1G8X|B Chain B, Structure Of A Genetically Engineered Molecular Motor
Length = 1010
Score = 111 bits (278), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 59/112 (52%), Positives = 77/112 (68%), Gaps = 4/112 (3%)
Query: 69 AIGNAKTIRNDNSSRFGKFTELHFNKHYNIIGASMRTYLLEKSRVVFQAPNERNYHVFYQ 128
A GNAKT RN+NSS FGKF E+ FN I GAS+++YLLEKSRVVFQ+ ERNYH+FYQ
Sbjct: 224 AFGNAKTTRNNNSSEFGKFIEIQFNNAGFISGASIQSYLLEKSRVVFQSETERNYHIFYQ 283
Query: 129 LCCA--RDKYPYLLLDEPDSFQYIRE--CCEIPGVNDEEGFEETQQAFVTLG 176
L ++ L L P+SF Y+ + C +I GV+DE+ F+ T+QA +G
Sbjct: 284 LLAGATAEEKKALHLAGPESFNYLNQSGCVDIKGVSDEDEFKITRQAMDIVG 335
>pdb|2OS8|A Chain A, Rigor-Like Structures Of Muscle Myosins Reveal Key
Mechanical Elements In The Transduction Pathways Of This
Allosteric Motor
pdb|2OTG|A Chain A, Rigor-Like Structures Of Muscle Myosins Reveal Key
Mechanical Elements In The Transduction Pathways Of This
Allosteric Motor
Length = 840
Score = 101 bits (252), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 54/112 (48%), Positives = 72/112 (64%), Gaps = 4/112 (3%)
Query: 69 AIGNAKTIRNDNSSRFGKFTELHFNKHYNIIGASMRTYLLEKSRVVFQAPNERNYHVFYQ 128
A GNAKT+RN+NSSRFGKF +HF I GA + TYLLEKSRV +Q ERNYH+FYQ
Sbjct: 229 AFGNAKTVRNNNSSRFGKFIRIHFGPTGKIAGADIETYLLEKSRVTYQQSAERNYHIFYQ 288
Query: 129 LCC-ARDKYPYLLLDEPDS--FQYIRE-CCEIPGVNDEEGFEETQQAFVTLG 176
+C A + ++L PDS + +I + C + ++D E F+ +AF LG
Sbjct: 289 ICSNAIPELNEVMLITPDSGLYSFINQGCLTVDNIDDVEEFKLCDEAFDILG 340
>pdb|1QVI|A Chain A, Crystal Structure Of Scallop Myosin S1 In The Pre-Power
Stroke State To 2.6 Angstrom Resolution: Flexibility And
Function In The Head
pdb|1S5G|A Chain A, Structure Of Scallop Myosin S1 Reveals A Novel Nucleotide
Conformation
pdb|1SR6|A Chain A, Structure Of Nucleotide-free Scallop Myosin S1
Length = 840
Score = 99.8 bits (247), Expect = 8e-22, Method: Compositional matrix adjust.
Identities = 54/112 (48%), Positives = 71/112 (63%), Gaps = 4/112 (3%)
Query: 69 AIGNAKTIRNDNSSRFGKFTELHFNKHYNIIGASMRTYLLEKSRVVFQAPNERNYHVFYQ 128
A GNAKT RN+NSSRFGKF +HF I GA + TYLLEKSRV +Q ERNYH+FYQ
Sbjct: 228 AYGNAKTTRNNNSSRFGKFIRIHFGPTGKIAGADIETYLLEKSRVTYQQSAERNYHIFYQ 287
Query: 129 LCC-ARDKYPYLLLDEPDS--FQYIRE-CCEIPGVNDEEGFEETQQAFVTLG 176
+C A + ++L PDS + +I + C + ++D E F+ +AF LG
Sbjct: 288 ICSNAIPELNDVMLVTPDSGLYSFINQGCLTVDNIDDVEEFKLCDEAFDILG 339
>pdb|2EC6|A Chain A, Placopecten Striated Muscle Myosin Ii
Length = 838
Score = 99.8 bits (247), Expect = 8e-22, Method: Compositional matrix adjust.
Identities = 54/112 (48%), Positives = 71/112 (63%), Gaps = 4/112 (3%)
Query: 69 AIGNAKTIRNDNSSRFGKFTELHFNKHYNIIGASMRTYLLEKSRVVFQAPNERNYHVFYQ 128
A GNAKT RN+NSSRFGKF +HF I GA + TYLLEKSRV +Q ERNYH+FYQ
Sbjct: 230 AYGNAKTTRNNNSSRFGKFIRIHFGPTGKIAGADIETYLLEKSRVTYQQSAERNYHIFYQ 289
Query: 129 LCC-ARDKYPYLLLDEPDS--FQYIRE-CCEIPGVNDEEGFEETQQAFVTLG 176
+C A + ++L PDS + +I + C + ++D E F+ +AF LG
Sbjct: 290 ICSNAIPELNEVMLITPDSGLYSFINQGCLTVDNIDDVEEFKLCDEAFDILG 341
>pdb|1B7T|A Chain A, Myosin Digested By Papain
pdb|1L2O|A Chain A, Scallop Myosin S1-Adp-P-Pdm In The Actin-Detached
Conformation
pdb|1KQM|A Chain A, Scallop Myosin S1-Amppnp In The Actin-Detached
Conformation
pdb|1KWO|A Chain A, Scallop Myosin S1-Atpgammas-P-Pdm In The Actin-Detached
Conformation
Length = 835
Score = 99.8 bits (247), Expect = 8e-22, Method: Compositional matrix adjust.
Identities = 54/112 (48%), Positives = 71/112 (63%), Gaps = 4/112 (3%)
Query: 69 AIGNAKTIRNDNSSRFGKFTELHFNKHYNIIGASMRTYLLEKSRVVFQAPNERNYHVFYQ 128
A GNAKT RN+NSSRFGKF +HF I GA + TYLLEKSRV +Q ERNYH+FYQ
Sbjct: 228 AYGNAKTTRNNNSSRFGKFIRIHFGPTGKIAGADIETYLLEKSRVTYQQSAERNYHIFYQ 287
Query: 129 LCC-ARDKYPYLLLDEPDS--FQYIRE-CCEIPGVNDEEGFEETQQAFVTLG 176
+C A + ++L PDS + +I + C + ++D E F+ +AF LG
Sbjct: 288 ICSNAIPELNDVMLVTPDSGLYSFINQGCLTVDNIDDVEEFKLCDEAFDILG 339
>pdb|1KK7|A Chain A, Scallop Myosin In The Near Rigor Conformation
pdb|1KK8|A Chain A, Scallop Myosin (S1-Adp-Befx) In The Actin-Detached
Conformation
Length = 837
Score = 99.8 bits (247), Expect = 8e-22, Method: Compositional matrix adjust.
Identities = 54/112 (48%), Positives = 71/112 (63%), Gaps = 4/112 (3%)
Query: 69 AIGNAKTIRNDNSSRFGKFTELHFNKHYNIIGASMRTYLLEKSRVVFQAPNERNYHVFYQ 128
A GNAKT RN+NSSRFGKF +HF I GA + TYLLEKSRV +Q ERNYH+FYQ
Sbjct: 228 AYGNAKTTRNNNSSRFGKFIRIHFGPTGKIAGADIETYLLEKSRVTYQQSAERNYHIFYQ 287
Query: 129 LCC-ARDKYPYLLLDEPDS--FQYIRE-CCEIPGVNDEEGFEETQQAFVTLG 176
+C A + ++L PDS + +I + C + ++D E F+ +AF LG
Sbjct: 288 ICSNAIPELNDVMLVTPDSGLYSFINQGCLTVDNIDDVEEFKLCDEAFDILG 339
>pdb|1DFK|A Chain A, Nucleotide-Free Scallop Myosin S1-Near Rigor State
Length = 830
Score = 99.4 bits (246), Expect = 9e-22, Method: Compositional matrix adjust.
Identities = 54/112 (48%), Positives = 71/112 (63%), Gaps = 4/112 (3%)
Query: 69 AIGNAKTIRNDNSSRFGKFTELHFNKHYNIIGASMRTYLLEKSRVVFQAPNERNYHVFYQ 128
A GNAKT RN+NSSRFGKF +HF I GA + TYLLEKSRV +Q ERNYH+FYQ
Sbjct: 223 AYGNAKTTRNNNSSRFGKFIRIHFGPTGKIAGADIETYLLEKSRVTYQQSAERNYHIFYQ 282
Query: 129 LCC-ARDKYPYLLLDEPDS--FQYIRE-CCEIPGVNDEEGFEETQQAFVTLG 176
+C A + ++L PDS + +I + C + ++D E F+ +AF LG
Sbjct: 283 ICSNAIPELNDVMLVTPDSGLYSFINQGCLTVDNIDDVEEFKLCDEAFDILG 334
>pdb|1DFL|A Chain A, Scallop Myosin S1 Complexed With Mgadp:vanadate-Transition
State
pdb|1DFL|B Chain B, Scallop Myosin S1 Complexed With Mgadp:vanadate-Transition
State
pdb|2W4T|C Chain C, Isometrically Contracting Insect Asynchronous Flight
Muscle
pdb|2W4V|C Chain C, Isometrically Contracting Insect Asynchronous Flight
Muscle Quick Frozen After A Quick Release Step
pdb|2W4W|C Chain C, Isometrically Contracting Insect Asynchronous Flight
Muscle Quick Frozen After A Quick Stretch Step
Length = 831
Score = 99.4 bits (246), Expect = 9e-22, Method: Compositional matrix adjust.
Identities = 54/112 (48%), Positives = 71/112 (63%), Gaps = 4/112 (3%)
Query: 69 AIGNAKTIRNDNSSRFGKFTELHFNKHYNIIGASMRTYLLEKSRVVFQAPNERNYHVFYQ 128
A GNAKT RN+NSSRFGKF +HF I GA + TYLLEKSRV +Q ERNYH+FYQ
Sbjct: 224 AYGNAKTTRNNNSSRFGKFIRIHFGPTGKIAGADIETYLLEKSRVTYQQSAERNYHIFYQ 283
Query: 129 LCC-ARDKYPYLLLDEPDS--FQYIRE-CCEIPGVNDEEGFEETQQAFVTLG 176
+C A + ++L PDS + +I + C + ++D E F+ +AF LG
Sbjct: 284 ICSNAIPELNDVMLVTPDSGLYSFINQGCLTVDNIDDVEEFKLCDEAFDILG 335
>pdb|4ANJ|A Chain A, Myosin Vi (Mdinsert2-Gfp Fusion) Pre-Powerstroke State
(Mg.Adp.Alf4)
Length = 1052
Score = 99.0 bits (245), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 46/88 (52%), Positives = 61/88 (69%), Gaps = 2/88 (2%)
Query: 69 AIGNAKTIRNDNSSRFGKFTELHFNKHYNIIGASMRTYLLEKSRVVFQAPNERNYHVFYQ 128
A GNAKT+RN+NSSRFGKF E+HFN+ +++G + YLLEKSR+ Q ERNYH+FY+
Sbjct: 191 AFGNAKTVRNNNSSRFGKFVEIHFNEKSSVVGGFVSHYLLEKSRICVQGKEERNYHIFYR 250
Query: 129 LC--CARDKYPYLLLDEPDSFQYIRECC 154
LC + D L L PD+F+Y+ C
Sbjct: 251 LCAGASEDIRERLHLSSPDNFRYLNRGC 278
>pdb|4E7S|A Chain A, Myosin Vi D23r I24r R569e (Md) Pre-Powerstroke State
pdb|4E7S|B Chain B, Myosin Vi D23r I24r R569e (Md) Pre-Powerstroke State
Length = 798
Score = 99.0 bits (245), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 46/88 (52%), Positives = 61/88 (69%), Gaps = 2/88 (2%)
Query: 69 AIGNAKTIRNDNSSRFGKFTELHFNKHYNIIGASMRTYLLEKSRVVFQAPNERNYHVFYQ 128
A GNAKT+RN+NSSRFGKF E+HFN+ +++G + YLLEKSR+ Q ERNYH+FY+
Sbjct: 200 AFGNAKTVRNNNSSRFGKFVEIHFNEKSSVVGGFVSHYLLEKSRICVQGKEERNYHIFYR 259
Query: 129 LC--CARDKYPYLLLDEPDSFQYIRECC 154
LC + D L L PD+F+Y+ C
Sbjct: 260 LCAGASEDIRERLHLSSPDNFRYLNRGC 287
>pdb|4DBP|A Chain A, Myosin Vi Nucleotide-free (mdinsert2) D179y Crystal
Structure
Length = 814
Score = 99.0 bits (245), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 46/88 (52%), Positives = 61/88 (69%), Gaps = 2/88 (2%)
Query: 69 AIGNAKTIRNDNSSRFGKFTELHFNKHYNIIGASMRTYLLEKSRVVFQAPNERNYHVFYQ 128
A GNAKT+RN+NSSRFGKF E+HFN+ +++G + YLLEKSR+ Q ERNYH+FY+
Sbjct: 190 AFGNAKTVRNNNSSRFGKFVEIHFNEKSSVVGGFVSHYLLEKSRICVQGKEERNYHIFYR 249
Query: 129 LC--CARDKYPYLLLDEPDSFQYIRECC 154
LC + D L L PD+F+Y+ C
Sbjct: 250 LCAGASEDIRERLHLSSPDNFRYLNRGC 277
>pdb|3L9I|A Chain A, Myosin Vi Nucleotide-Free (Mdinsert2) L310g Mutant Crystal
Structure
Length = 814
Score = 99.0 bits (245), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 46/88 (52%), Positives = 61/88 (69%), Gaps = 2/88 (2%)
Query: 69 AIGNAKTIRNDNSSRFGKFTELHFNKHYNIIGASMRTYLLEKSRVVFQAPNERNYHVFYQ 128
A GNAKT+RN+NSSRFGKF E+HFN+ +++G + YLLEKSR+ Q ERNYH+FY+
Sbjct: 190 AFGNAKTVRNNNSSRFGKFVEIHFNEKSSVVGGFVSHYLLEKSRICVQGKEERNYHIFYR 249
Query: 129 LC--CARDKYPYLLLDEPDSFQYIRECC 154
LC + D L L PD+F+Y+ C
Sbjct: 250 LCAGASEDIRERLHLSSPDNFRYLNRGC 277
>pdb|2BKH|A Chain A, Myosin Vi Nucleotide-Free (Mdinsert2) Crystal Structure
Length = 814
Score = 99.0 bits (245), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 46/88 (52%), Positives = 61/88 (69%), Gaps = 2/88 (2%)
Query: 69 AIGNAKTIRNDNSSRFGKFTELHFNKHYNIIGASMRTYLLEKSRVVFQAPNERNYHVFYQ 128
A GNAKT+RN+NSSRFGKF E+HFN+ +++G + YLLEKSR+ Q ERNYH+FY+
Sbjct: 190 AFGNAKTVRNNNSSRFGKFVEIHFNEKSSVVGGFVSHYLLEKSRICVQGKEERNYHIFYR 249
Query: 129 LC--CARDKYPYLLLDEPDSFQYIRECC 154
LC + D L L PD+F+Y+ C
Sbjct: 250 LCAGASEDIRERLHLSSPDNFRYLNRGC 277
>pdb|2BKI|A Chain A, Myosin Vi Nucleotide-Free (Mdinsert2-Iq) Crystal Structure
Length = 858
Score = 99.0 bits (245), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 46/88 (52%), Positives = 61/88 (69%), Gaps = 2/88 (2%)
Query: 69 AIGNAKTIRNDNSSRFGKFTELHFNKHYNIIGASMRTYLLEKSRVVFQAPNERNYHVFYQ 128
A GNAKT+RN+NSSRFGKF E+HFN+ +++G + YLLEKSR+ Q ERNYH+FY+
Sbjct: 191 AFGNAKTVRNNNSSRFGKFVEIHFNEKSSVVGGFVSHYLLEKSRICVQGKEERNYHIFYR 250
Query: 129 LC--CARDKYPYLLLDEPDSFQYIRECC 154
LC + D L L PD+F+Y+ C
Sbjct: 251 LCAGASEDIRERLHLSSPDNFRYLNRGC 278
>pdb|4E7Z|A Chain A, Myosin Vi (Md) Pre-Powerstroke State, P21 Crystal Form
pdb|4E7Z|B Chain B, Myosin Vi (Md) Pre-Powerstroke State, P21 Crystal Form
Length = 798
Score = 99.0 bits (245), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 46/88 (52%), Positives = 61/88 (69%), Gaps = 2/88 (2%)
Query: 69 AIGNAKTIRNDNSSRFGKFTELHFNKHYNIIGASMRTYLLEKSRVVFQAPNERNYHVFYQ 128
A GNAKT+RN+NSSRFGKF E+HFN+ +++G + YLLEKSR+ Q ERNYH+FY+
Sbjct: 200 AFGNAKTVRNNNSSRFGKFVEIHFNEKSSVVGGFVSHYLLEKSRICVQGKEERNYHIFYR 259
Query: 129 LC--CARDKYPYLLLDEPDSFQYIRECC 154
LC + D L L PD+F+Y+ C
Sbjct: 260 LCAGASEDIRERLHLSSPDNFRYLNRGC 287
>pdb|4DBR|A Chain A, Myosin Vi D179y (md) Pre-powerstroke State
Length = 786
Score = 98.6 bits (244), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 46/88 (52%), Positives = 61/88 (69%), Gaps = 2/88 (2%)
Query: 69 AIGNAKTIRNDNSSRFGKFTELHFNKHYNIIGASMRTYLLEKSRVVFQAPNERNYHVFYQ 128
A GNAKT+RN+NSSRFGKF E+HFN+ +++G + YLLEKSR+ Q ERNYH+FY+
Sbjct: 188 AFGNAKTVRNNNSSRFGKFVEIHFNEKSSVVGGFVSHYLLEKSRICVQGKEERNYHIFYR 247
Query: 129 LC--CARDKYPYLLLDEPDSFQYIRECC 154
LC + D L L PD+F+Y+ C
Sbjct: 248 LCAGASEDIRERLHLSSPDNFRYLNRGC 275
>pdb|2V26|A Chain A, Myosin Vi (Md) Pre-Powerstroke State (Mg.Adp.Vo4)
Length = 784
Score = 98.6 bits (244), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 46/88 (52%), Positives = 61/88 (69%), Gaps = 2/88 (2%)
Query: 69 AIGNAKTIRNDNSSRFGKFTELHFNKHYNIIGASMRTYLLEKSRVVFQAPNERNYHVFYQ 128
A GNAKT+RN+NSSRFGKF E+HFN+ +++G + YLLEKSR+ Q ERNYH+FY+
Sbjct: 187 AFGNAKTVRNNNSSRFGKFVEIHFNEKSSVVGGFVSHYLLEKSRICVQGKEERNYHIFYR 246
Query: 129 LC--CARDKYPYLLLDEPDSFQYIRECC 154
LC + D L L PD+F+Y+ C
Sbjct: 247 LCAGASEDIRERLHLSSPDNFRYLNRGC 274
>pdb|2W4A|M Chain M, Isometrically Contracting Insect Asynchronous Flight
Muscle
pdb|2W4G|M Chain M, Isometrically Contracting Insect Asynchronous Flight
Muscle Quick Frozen After A Quick Stretch Step
pdb|2W4H|M Chain M, Isometrically Contracting Insect Asynchronous Flight
Muscle Quick Frozen After A Quick Release Step
Length = 840
Score = 98.2 bits (243), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 51/114 (44%), Positives = 67/114 (58%), Gaps = 8/114 (7%)
Query: 69 AIGNAKTIRNDNSSRFGKFTELHFNKHYNIIGASMRTYLLEKSRVVFQAPNERNYHVFYQ 128
A GNAKT+RNDNSSRFGKF +HF + A + TYLLEKSRV FQ P ER+YH+FYQ
Sbjct: 228 AFGNAKTVRNDNSSRFGKFIRIHFGATGKLASADIETYLLEKSRVTFQLPAERSYHIFYQ 287
Query: 129 LCCARDKYP-----YLLLDEPDSFQYIREC-CEIPGVNDEEGFEETQQAFVTLG 176
+ +K P L+ P + Y+ + +P ++D+E T A LG
Sbjct: 288 IMS--NKKPELIDMLLITTNPYDYHYVSQGEITVPSIDDQEELMATDSAIDILG 339
>pdb|2X51|A Chain A, M6 Delta Insert1
Length = 789
Score = 97.1 bits (240), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 50/112 (44%), Positives = 69/112 (61%), Gaps = 4/112 (3%)
Query: 69 AIGNAKTIRNDNSSRFGKFTELHFNKHYNIIGASMRTYLLEKSRVVFQAPNERNYHVFYQ 128
A GNAKT+RN+NSSRFGKF E+HFN+ +++G + YLLEKSR+ Q ERNYH+FY+
Sbjct: 191 AFGNAKTVRNNNSSRFGKFVEIHFNEKSSVVGGFVSHYLLEKSRICVQGKEERNYHIFYR 250
Query: 129 LC--CARDKYPYLLLDEPDSFQYIRECCEI--PGVNDEEGFEETQQAFVTLG 176
LC + D L L PD+F+Y+ + P ++D F A +G
Sbjct: 251 LCAGASEDIRERLHLSSPDNFRYLNRGGSLKDPLLDDHGDFIRMCTAMKKIG 302
>pdb|2VAS|A Chain A, Myosin Vi (Md-Insert2-Cam, Delta-Insert1) Post-Rigor State
pdb|2VB6|A Chain A, Myosin Vi (Md-Insert2-Cam, Delta Insert1) Post-Rigor State
( Crystal Form 2)
Length = 788
Score = 97.1 bits (240), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 50/112 (44%), Positives = 69/112 (61%), Gaps = 4/112 (3%)
Query: 69 AIGNAKTIRNDNSSRFGKFTELHFNKHYNIIGASMRTYLLEKSRVVFQAPNERNYHVFYQ 128
A GNAKT+RN+NSSRFGKF E+HFN+ +++G + YLLEKSR+ Q ERNYH+FY+
Sbjct: 190 AFGNAKTVRNNNSSRFGKFVEIHFNEKSSVVGGFVSHYLLEKSRICVQGKEERNYHIFYR 249
Query: 129 LC--CARDKYPYLLLDEPDSFQYIRECCEI--PGVNDEEGFEETQQAFVTLG 176
LC + D L L PD+F+Y+ + P ++D F A +G
Sbjct: 250 LCAGASEDIRERLHLSSPDNFRYLNRGGSLKDPLLDDHGDFIRMCTAMKKIG 301
>pdb|4DBQ|A Chain A, Myosin Vi D179y (md-insert2-cam, Delta-insert1) Post-rigor
State
Length = 788
Score = 97.1 bits (240), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 50/112 (44%), Positives = 69/112 (61%), Gaps = 4/112 (3%)
Query: 69 AIGNAKTIRNDNSSRFGKFTELHFNKHYNIIGASMRTYLLEKSRVVFQAPNERNYHVFYQ 128
A GNAKT+RN+NSSRFGKF E+HFN+ +++G + YLLEKSR+ Q ERNYH+FY+
Sbjct: 190 AFGNAKTVRNNNSSRFGKFVEIHFNEKSSVVGGFVSHYLLEKSRICVQGKEERNYHIFYR 249
Query: 129 LC--CARDKYPYLLLDEPDSFQYIRECCEI--PGVNDEEGFEETQQAFVTLG 176
LC + D L L PD+F+Y+ + P ++D F A +G
Sbjct: 250 LCAGASEDIRERLHLSSPDNFRYLNRGGSLKDPLLDDHGDFIRMCTAMKKIG 301
>pdb|3I5G|A Chain A, Crystal Structure Of Rigor-Like Squid Myosin S1
pdb|3I5H|A Chain A, The Crystal Structure Of Rigor Like Squid Myosin S1 In The
Absence Of Nucleotide
pdb|3I5I|A Chain A, The Crystal Structure Of Squid Myosin S1 In The Presence
Of So4 2-
pdb|3I5F|A Chain A, Crystal Structure Of Squid Mg.Adp Myosin S1
Length = 839
Score = 95.9 bits (237), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 53/114 (46%), Positives = 67/114 (58%), Gaps = 8/114 (7%)
Query: 69 AIGNAKTIRNDNSSRFGKFTELHFNKHYNIIGASMRTYLLEKSRVVFQAPNERNYHVFYQ 128
A GNAKT RN+NSSRFGKF +HF I GA + TYLLEKSRV +Q ERNYH+FYQ
Sbjct: 233 AYGNAKTTRNNNSSRFGKFIRIHFGTQGKIAGADIETYLLEKSRVTYQQSAERNYHIFYQ 292
Query: 129 LCCARDKYP-----YLLLDEPDSFQYIRE-CCEIPGVNDEEGFEETQQAFVTLG 176
L +P L + +P + +I + + G++DEE T AF LG
Sbjct: 293 LLSP--AFPENIEKILAVPDPGLYGFINQGTLTVDGIDDEEEMGLTDTAFDVLG 344
>pdb|4DB1|A Chain A, Cardiac Human Myosin S1dc, Beta Isoform Complexed With
Mn-Amppnp
pdb|4DB1|B Chain B, Cardiac Human Myosin S1dc, Beta Isoform Complexed With
Mn-Amppnp
Length = 783
Score = 95.1 bits (235), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 64/165 (38%), Positives = 87/165 (52%), Gaps = 19/165 (11%)
Query: 18 KKVLAYSPIMEAIGNAKTIRNDNRSRFGKFTELHFNKHYNIIGASMRTCHFAIGNAKTIR 77
K+V+ Y ++ AIG+ R+ GK T II A+ A GNAKT+R
Sbjct: 189 KRVIQYFAVIAAIGD----RSKKDQSPGKGT-----LEDQIIQAN--PALEAFGNAKTVR 237
Query: 78 NDNSSRFGKFTELHFNKHYNIIGASMRTYLLEKSRVVFQAPNERNYHVFYQLCCARDKYP 137
NDNSSRFGKF +HF + A + TYLLEKSRV+FQ ER+YH+FYQ+ +K P
Sbjct: 238 NDNSSRFGKFIRIHFGATGKLASADIETYLLEKSRVIFQLKAERDYHIFYQILS--NKKP 295
Query: 138 YLL-----LDEPDSFQYIREC-CEIPGVNDEEGFEETQQAFVTLG 176
LL + P + +I + + ++D E T AF LG
Sbjct: 296 ELLDMLLITNNPYDYAFISQGETTVASIDDAEELMATDNAFDVLG 340
>pdb|1BR1|A Chain A, Smooth Muscle Myosin Motor Domain-Essential Light Chain
Complex With Mgadp.Alf4 Bound At The Active Site
pdb|1BR1|C Chain C, Smooth Muscle Myosin Motor Domain-Essential Light Chain
Complex With Mgadp.Alf4 Bound At The Active Site
pdb|1BR1|E Chain E, Smooth Muscle Myosin Motor Domain-Essential Light Chain
Complex With Mgadp.Alf4 Bound At The Active Site
pdb|1BR1|G Chain G, Smooth Muscle Myosin Motor Domain-Essential Light Chain
Complex With Mgadp.Alf4 Bound At The Active Site
pdb|1BR4|A Chain A, Smooth Muscle Myosin Motor Domain-Essential Light Chain
Complex With Mgadp.Bef3 Bound At The Active Site
pdb|1BR4|C Chain C, Smooth Muscle Myosin Motor Domain-Essential Light Chain
Complex With Mgadp.Bef3 Bound At The Active Site
pdb|1BR4|E Chain E, Smooth Muscle Myosin Motor Domain-Essential Light Chain
Complex With Mgadp.Bef3 Bound At The Active Site
pdb|1BR4|G Chain G, Smooth Muscle Myosin Motor Domain-Essential Light Chain
Complex With Mgadp.Bef3 Bound At The Active Site
Length = 820
Score = 91.7 bits (226), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 48/111 (43%), Positives = 71/111 (63%), Gaps = 3/111 (2%)
Query: 69 AIGNAKTIRNDNSSRFGKFTELHFNKHYNIIGASMRTYLLEKSRVVFQAPNERNYHVFYQ 128
A GNAKT++NDNSSRFGKF ++F+ I+GA++ TYLLEKSR + QA +ER +H+FY
Sbjct: 232 AFGNAKTVKNDNSSRFGKFIRINFDVTGYIVGANIETYLLEKSRAIRQAKDERTFHIFYY 291
Query: 129 LCCARDKYPY--LLLDEPDSFQYIREC-CEIPGVNDEEGFEETQQAFVTLG 176
L + LLL+ +++ ++ IP D+E F+ET +A +G
Sbjct: 292 LIAGASEQMRNDLLLEGFNNYTFLSNGHVPIPAQQDDEMFQETLEAMTIMG 342
>pdb|1BR2|A Chain A, Smooth Muscle Myosin Motor Domain Complexed With
Mgadp.Alf4
pdb|1BR2|B Chain B, Smooth Muscle Myosin Motor Domain Complexed With
Mgadp.Alf4
pdb|1BR2|C Chain C, Smooth Muscle Myosin Motor Domain Complexed With
Mgadp.Alf4
pdb|1BR2|D Chain D, Smooth Muscle Myosin Motor Domain Complexed With
Mgadp.Alf4
pdb|1BR2|E Chain E, Smooth Muscle Myosin Motor Domain Complexed With
Mgadp.Alf4
pdb|1BR2|F Chain F, Smooth Muscle Myosin Motor Domain Complexed With
Mgadp.Alf4
Length = 791
Score = 91.3 bits (225), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 48/111 (43%), Positives = 71/111 (63%), Gaps = 3/111 (2%)
Query: 69 AIGNAKTIRNDNSSRFGKFTELHFNKHYNIIGASMRTYLLEKSRVVFQAPNERNYHVFYQ 128
A GNAKT++NDNSSRFGKF ++F+ I+GA++ TYLLEKSR + QA +ER +H+FY
Sbjct: 232 AFGNAKTVKNDNSSRFGKFIRINFDVTGYIVGANIETYLLEKSRAIRQAKDERTFHIFYY 291
Query: 129 LCCARDKYPY--LLLDEPDSFQYIREC-CEIPGVNDEEGFEETQQAFVTLG 176
L + LLL+ +++ ++ IP D+E F+ET +A +G
Sbjct: 292 LIAGASEQMRNDLLLEGFNNYTFLSNGHVPIPAQQDDEMFQETLEAMTIMG 342
>pdb|3DTP|B Chain B, Tarantula Heavy Meromyosin Obtained By Flexible Docking To
Tarantula Muscle Thick Filament Cryo-Em 3d-Map
Length = 973
Score = 91.3 bits (225), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 48/111 (43%), Positives = 71/111 (63%), Gaps = 3/111 (2%)
Query: 69 AIGNAKTIRNDNSSRFGKFTELHFNKHYNIIGASMRTYLLEKSRVVFQAPNERNYHVFYQ 128
A GNAKT++NDNSSRFGKF ++F+ I+GA++ TYLLEKSR + QA +ER +H+FY
Sbjct: 232 AFGNAKTVKNDNSSRFGKFIRINFDVTGYIVGANIETYLLEKSRAIRQAKDERTFHIFYY 291
Query: 129 LCCARDKYPY--LLLDEPDSFQYIREC-CEIPGVNDEEGFEETQQAFVTLG 176
L + LLL+ +++ ++ IP D+E F+ET +A +G
Sbjct: 292 LIAGASEQMRNDLLLEGFNNYTFLSNGHVPIPAQQDDEMFQETLEAMTIMG 342
>pdb|3J04|A Chain A, Em Structure Of The Heavy Meromyosin Subfragment Of Chick
Smooth Muscle Myosin With Regulatory Light Chain In
Phosphorylated State
pdb|3J04|D Chain D, Em Structure Of The Heavy Meromyosin Subfragment Of Chick
Smooth Muscle Myosin With Regulatory Light Chain In
Phosphorylated State
Length = 909
Score = 91.3 bits (225), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 48/111 (43%), Positives = 71/111 (63%), Gaps = 3/111 (2%)
Query: 69 AIGNAKTIRNDNSSRFGKFTELHFNKHYNIIGASMRTYLLEKSRVVFQAPNERNYHVFYQ 128
A GNAKT++NDNSSRFGKF ++F+ I+GA++ TYLLEKSR + QA +ER +H+FY
Sbjct: 232 AFGNAKTVKNDNSSRFGKFIRINFDVTGYIVGANIETYLLEKSRAIRQAKDERTFHIFYY 291
Query: 129 LCCARDKYPY--LLLDEPDSFQYIREC-CEIPGVNDEEGFEETQQAFVTLG 176
L + LLL+ +++ ++ IP D+E F+ET +A +G
Sbjct: 292 LIAGASEQMRNDLLLEGFNNYTFLSNGHVPIPAQQDDEMFQETLEAMTIMG 342
>pdb|3DTP|A Chain A, Tarantula Heavy Meromyosin Obtained By Flexible Docking To
Tarantula Muscle Thick Filament Cryo-Em 3d-Map
Length = 971
Score = 91.3 bits (225), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 48/111 (43%), Positives = 71/111 (63%), Gaps = 3/111 (2%)
Query: 69 AIGNAKTIRNDNSSRFGKFTELHFNKHYNIIGASMRTYLLEKSRVVFQAPNERNYHVFYQ 128
A GNAKT++NDNSSRFGKF ++F+ I+GA++ TYLLEKSR + QA +ER +H+FY
Sbjct: 232 AFGNAKTVKNDNSSRFGKFIRINFDVTGYIVGANIETYLLEKSRAIRQAKDERTFHIFYY 291
Query: 129 LCCARDKYPY--LLLDEPDSFQYIREC-CEIPGVNDEEGFEETQQAFVTLG 176
L + LLL+ +++ ++ IP D+E F+ET +A +G
Sbjct: 292 LIAGASEQMRNDLLLEGFNNYTFLSNGHVPIPAQQDDEMFQETLEAMTIMG 342
>pdb|1M8Q|A Chain A, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1M8Q|D Chain D, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1M8Q|G Chain G, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1M8Q|P Chain P, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1MVW|A Chain A, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1MVW|D Chain D, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1MVW|G Chain G, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1MVW|J Chain J, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1MVW|M Chain M, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1MVW|P Chain P, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O18|A Chain A, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O18|D Chain D, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O18|G Chain G, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O18|J Chain J, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O18|M Chain M, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O18|P Chain P, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O19|A Chain A, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O19|D Chain D, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O19|G Chain G, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O19|J Chain J, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O19|M Chain M, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O19|S Chain S, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1A|A Chain A, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1A|D Chain D, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1A|G Chain G, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1A|J Chain J, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1A|M Chain M, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1A|P Chain P, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1B|A Chain A, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1B|D Chain D, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1B|G Chain G, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1B|J Chain J, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1C|A Chain A, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1C|D Chain D, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1C|G Chain G, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1C|J Chain J, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1C|P Chain P, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1D|A Chain A, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1D|D Chain D, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1D|G Chain G, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1D|J Chain J, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1D|M Chain M, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1D|P Chain P, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1E|A Chain A, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1E|D Chain D, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1E|G Chain G, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1E|J Chain J, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1E|M Chain M, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1E|P Chain P, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1F|A Chain A, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1F|D Chain D, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1F|G Chain G, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1F|J Chain J, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1G|A Chain A, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1G|D Chain D, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1G|G Chain G, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1G|J Chain J, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1G|M Chain M, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1G|P Chain P, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
Length = 840
Score = 90.9 bits (224), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 48/114 (42%), Positives = 63/114 (55%), Gaps = 8/114 (7%)
Query: 69 AIGNAKTIRNDNSSRFGKFTELHFNKHYNIIGASMRTYLLEKSRVVFQAPNERNYHVFYQ 128
A GNA T+RNDNSSRFG F +HF + A + TYLLE SRV FQ P ER+YH+FYQ
Sbjct: 228 AFGNAXTVRNDNSSRFGXFIRIHFGATGKLASADIETYLLEXSRVTFQLPAERSYHIFYQ 287
Query: 129 LCCARDKYP-----YLLLDEPDSFQYIREC-CEIPGVNDEEGFEETQQAFVTLG 176
+ + P L+ P + Y+ E +P ++D+E T A LG
Sbjct: 288 IMS--NXXPELIDMLLITTNPYDYHYVSEGEITVPSIDDQEELMATDSAIDILG 339
>pdb|2MYS|A Chain A, Myosin Subfragment-1, Alpha Carbon Coordinates Only For
The Two Light Chains
Length = 843
Score = 90.9 bits (224), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 48/114 (42%), Positives = 63/114 (55%), Gaps = 8/114 (7%)
Query: 69 AIGNAKTIRNDNSSRFGKFTELHFNKHYNIIGASMRTYLLEKSRVVFQAPNERNYHVFYQ 128
A GNA T+RNDNSSRFG F +HF + A + TYLLE SRV FQ P ER+YH+FYQ
Sbjct: 231 AFGNAXTVRNDNSSRFGXFIRIHFGATGKLASADIETYLLEXSRVTFQLPAERSYHIFYQ 290
Query: 129 LCCARDKYP-----YLLLDEPDSFQYIREC-CEIPGVNDEEGFEETQQAFVTLG 176
+ + P L+ P + Y+ E +P ++D+E T A LG
Sbjct: 291 IMS--NXXPELIDMLLITTNPYDYHYVSEGEITVPSIDDQEELMATDSAIDILG 342
>pdb|1I84|S Chain S, Cryo-Em Structure Of The Heavy Meromyosin Subfragment Of
Chicken Gizzard Smooth Muscle Myosin With Regulatory
Light Chain In The Dephosphorylated State. Only C Alphas
Provided For Regulatory Light Chain. Only Backbone Atoms
Provided For S2 Fragment.
pdb|1I84|V Chain V, Cryo-Em Structure Of The Heavy Meromyosin Subfragment Of
Chicken Gizzard Smooth Muscle Myosin With Regulatory
Light Chain In The Dephosphorylated State. Only C Alphas
Provided For Regulatory Light Chain. Only Backbone Atoms
Provided For S2 Fragment
Length = 1184
Score = 90.1 bits (222), Expect = 6e-19, Method: Composition-based stats.
Identities = 48/111 (43%), Positives = 71/111 (63%), Gaps = 3/111 (2%)
Query: 69 AIGNAKTIRNDNSSRFGKFTELHFNKHYNIIGASMRTYLLEKSRVVFQAPNERNYHVFYQ 128
A GNAKT++NDNSSRFGKF ++F+ I+GA++ TYLLEKSR + QA +ER +H+FY
Sbjct: 232 AFGNAKTVKNDNSSRFGKFIRINFDVTGYIVGANIETYLLEKSRAIRQAKDERTFHIFYY 291
Query: 129 LCCARDKYPY--LLLDEPDSFQYIREC-CEIPGVNDEEGFEETQQAFVTLG 176
L + LLL+ +++ ++ IP D+E F+ET +A +G
Sbjct: 292 LIAGASEQMRNDLLLEGFNNYTFLSNGHVPIPAQQDDEMFQETLEAMTIMG 342
>pdb|1LKX|A Chain A, Motor Domain Of Myoe, A Class-I Myosin
pdb|1LKX|B Chain B, Motor Domain Of Myoe, A Class-I Myosin
pdb|1LKX|C Chain C, Motor Domain Of Myoe, A Class-I Myosin
pdb|1LKX|D Chain D, Motor Domain Of Myoe, A Class-I Myosin
Length = 697
Score = 85.9 bits (211), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 47/113 (41%), Positives = 71/113 (62%), Gaps = 5/113 (4%)
Query: 69 AIGNAKTIRNDNSSRFGKFTELHFNKHYNIIGASMRTYLLEKSRVVFQAPNERNYHVFYQ 128
A GNAKT+RNDNSSRFGK+ E+ FN + IG + YLLEKSRVV + ER++H+FYQ
Sbjct: 145 AFGNAKTLRNDNSSRFGKYMEMQFNAVGSPIGGKITNYLLEKSRVVGRTQGERSFHIFYQ 204
Query: 129 LC--CARDKYPYL-LLDEPDSFQYIRE--CCEIPGVNDEEGFEETQQAFVTLG 176
+ ++ K L L +++Y+++ C ++ ++D F+ +A TLG
Sbjct: 205 MLKGLSQSKLDELGLTPNAPAYEYLKKSGCFDVSTIDDSGEFKIIVKAMETLG 257
>pdb|4A7F|C Chain C, Structure Of The Actin-Tropomyosin-Myosin Complex (Rigor
Atm 3)
pdb|4A7F|G Chain G, Structure Of The Actin-Tropomyosin-Myosin Complex (Rigor
Atm 3)
pdb|4A7F|J Chain J, Structure Of The Actin-Tropomyosin-Myosin Complex (Rigor
Atm 3)
pdb|4A7H|C Chain C, Structure Of The Actin-Tropomyosin-Myosin Complex (Rigor
Atm 2)
pdb|4A7H|I Chain I, Structure Of The Actin-Tropomyosin-Myosin Complex (Rigor
Atm 2)
pdb|4A7H|J Chain J, Structure Of The Actin-Tropomyosin-Myosin Complex (Rigor
Atm 2)
pdb|4A7L|C Chain C, Structure Of The Actin-Tropomyosin-Myosin Complex (Rigor
Atm 1)
pdb|4A7L|G Chain G, Structure Of The Actin-Tropomyosin-Myosin Complex (Rigor
Atm 1)
pdb|4A7L|J Chain J, Structure Of The Actin-Tropomyosin-Myosin Complex (Rigor
Atm 1)
Length = 697
Score = 85.5 bits (210), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 47/113 (41%), Positives = 71/113 (62%), Gaps = 5/113 (4%)
Query: 69 AIGNAKTIRNDNSSRFGKFTELHFNKHYNIIGASMRTYLLEKSRVVFQAPNERNYHVFYQ 128
A GNAKT+RNDNSSRFGK+ E+ FN + IG + YLLEKSRVV + ER++H+FYQ
Sbjct: 145 AFGNAKTLRNDNSSRFGKYMEMQFNAVGSPIGGKITNYLLEKSRVVGRTQGERSFHIFYQ 204
Query: 129 LC--CARDKYPYL-LLDEPDSFQYIRE--CCEIPGVNDEEGFEETQQAFVTLG 176
+ ++ K L L +++Y+++ C ++ ++D F+ +A TLG
Sbjct: 205 MLKGLSQSKLDELGLTPNAPAYEYLKKSGCFDVSTIDDSGEFKIIVKAMETLG 257
>pdb|2YCU|A Chain A, Crystal Structure Of Human Non Muscle Myosin 2c In
Pre-power Stroke State
Length = 995
Score = 84.3 bits (207), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 48/110 (43%), Positives = 71/110 (64%), Gaps = 2/110 (1%)
Query: 69 AIGNAKTIRNDNSSRFGKFTELHFNKHYNIIGASMRTYLLEKSRVVFQAPNERNYHVFYQ 128
A GNAKT++NDNSSRFGKF ++F+ I+GA++ TYLLEKSR + QA +E ++H+FYQ
Sbjct: 202 AFGNAKTVKNDNSSRFGKFIRINFDVAGYIVGANIETYLLEKSRAIRQAKDECSFHIFYQ 261
Query: 129 LC-CARDKYPYLLLDEPDS-FQYIRECCEIPGVNDEEGFEETQQAFVTLG 176
L A ++ LL EP S ++++ + E F+ET ++ LG
Sbjct: 262 LLGGAGEQLKADLLLEPCSHYRFLTNGPSSSPGQERELFQETLESLRVLG 311
>pdb|4FXG|C Chain C, Complement C4 In Complex With Masp-2
pdb|4FXG|F Chain F, Complement C4 In Complex With Masp-2
pdb|4FXK|C Chain C, Human Complement C4
Length = 291
Score = 30.4 bits (67), Expect = 0.55, Method: Compositional matrix adjust.
Identities = 33/126 (26%), Positives = 47/126 (37%), Gaps = 27/126 (21%)
Query: 9 GSQTETQVEKKVLAYSPIMEAIGNAKTIRNDNRSRFGKFTE-----LHFNKHYNIIGASM 63
G Q E K Y P +E K +R D+R+ F F LHF K M
Sbjct: 152 GLQDEDGYRMKFACYYPRVEYGFQVKVLREDSRAAFRLFETKITQVLHFTKDVKAAANQM 211
Query: 64 RTCHFAIGNAKTIRNDNSSRFGKFTELHFNKHYNIIGASMRT--------YLLEKSRVVF 115
R +F + + +R L K Y I+G T YLL+ + +
Sbjct: 212 R--NFLVRASCRLR------------LEPGKEYLIMGLDGATYDLEGHPQYLLDSNSWIE 257
Query: 116 QAPNER 121
+ P+ER
Sbjct: 258 EMPSER 263
>pdb|2R1B|A Chain A, Crystal Structure Of Rat Neurexin 1beta With A Splice
Insert At Ss#4
pdb|2R1B|B Chain B, Crystal Structure Of Rat Neurexin 1beta With A Splice
Insert At Ss#4
Length = 220
Score = 30.0 bits (66), Expect = 0.76, Method: Compositional matrix adjust.
Identities = 32/129 (24%), Positives = 55/129 (42%), Gaps = 19/129 (14%)
Query: 14 TQVEKKVLAYSPIMEAIGNAKTIRNDNRSRFGKFTELHFNKHYNIIGA--SMRTCHFAIG 71
T+ ++ + +S + + A +R D+ S G + ELH H IG ++ T AI
Sbjct: 34 TRADRLAIGFSTVQK---EAVLVRVDSSSGLGDYLELHI--HQGKIGVKFNVGTDDIAIE 88
Query: 72 NAKTIRNDNSSRFGKFTELHFNKHYNIIGASMRTYLLEKSRVVFQAPNERNYHVFYQLCC 131
+ I ND GK+ + F + T ++ V+ + P N + +L
Sbjct: 89 ESNAIIND-----GKYHVVRFTRS-----GGNATLQVDSWPVIERYPAGNNDN--ERLAI 136
Query: 132 ARDKYPYLL 140
AR + PY L
Sbjct: 137 ARQRIPYRL 145
>pdb|3MW2|A Chain A, Crystal Structure Of Beta-Neurexin 1 With The Splice
Insert 4
pdb|3MW2|B Chain B, Crystal Structure Of Beta-Neurexin 1 With The Splice
Insert 4
Length = 207
Score = 30.0 bits (66), Expect = 0.78, Method: Compositional matrix adjust.
Identities = 32/129 (24%), Positives = 55/129 (42%), Gaps = 19/129 (14%)
Query: 14 TQVEKKVLAYSPIMEAIGNAKTIRNDNRSRFGKFTELHFNKHYNIIGA--SMRTCHFAIG 71
T+ ++ + +S + + A +R D+ S G + ELH H IG ++ T AI
Sbjct: 27 TRADRLAIGFSTVQK---EAVLVRVDSSSGLGDYLELHI--HQGKIGVKFNVGTDDIAIE 81
Query: 72 NAKTIRNDNSSRFGKFTELHFNKHYNIIGASMRTYLLEKSRVVFQAPNERNYHVFYQLCC 131
+ I ND GK+ + F + T ++ V+ + P N + +L
Sbjct: 82 ESNAIIND-----GKYHVVRFTRS-----GGNATLQVDSWPVIERYPAGNNDN--ERLAI 129
Query: 132 ARDKYPYLL 140
AR + PY L
Sbjct: 130 ARQRIPYRL 138
>pdb|1E8X|A Chain A, Structural Insights Into Phoshoinositide 3-Kinase
Enzymatic Mechanism And Signalling
pdb|1E90|A Chain A, Structure Determinants Of Phosphoinositide 3-Kinase
Inhibition By Wortmannin, Ly294002, Quercetin, Myricetin
And Staurosporine
pdb|1E7V|A Chain A, Structure Determinants Of Phosphoinositide 3-kinase
Inhibition By Wortmannin, Ly294002, Quercetin, Myricetin
And Staurosporine
pdb|1E8W|A Chain A, Structure Determinants Of Phosphoinositide 3-Kinase
Inhibition By Wortmannin, Ly294002, Quercetin, Myricetin
And Staurosporine
Length = 961
Score = 29.3 bits (64), Expect = 1.4, Method: Composition-based stats.
Identities = 14/47 (29%), Positives = 25/47 (53%), Gaps = 3/47 (6%)
Query: 108 LEKSRVVFQAPNERNYHVFYQLCCARDKYPYLLLDEP-DSFQYIREC 153
+ K + + P +N F C RD+ YL+ + P +FQ++R+C
Sbjct: 111 MAKKKSLMDIPESQNERDFVLRVCGRDE--YLVGETPIKNFQWVRQC 155
>pdb|1E7U|A Chain A, Structure Determinants Of Phosphoinositide 3-Kinase
Inhibition By Wortmannin, Ly294002, Quercetin, Myricetin
And Staurosporine
Length = 961
Score = 29.3 bits (64), Expect = 1.4, Method: Composition-based stats.
Identities = 14/47 (29%), Positives = 25/47 (53%), Gaps = 3/47 (6%)
Query: 108 LEKSRVVFQAPNERNYHVFYQLCCARDKYPYLLLDEP-DSFQYIREC 153
+ K + + P +N F C RD+ YL+ + P +FQ++R+C
Sbjct: 111 MAKKKSLMDIPESQNERDFVLRVCGRDE--YLVGETPIKNFQWVRQC 155
>pdb|3N5M|A Chain A, Crystals Structure Of A Bacillus Anthracis
Aminotransferase
pdb|3N5M|B Chain B, Crystals Structure Of A Bacillus Anthracis
Aminotransferase
pdb|3N5M|C Chain C, Crystals Structure Of A Bacillus Anthracis
Aminotransferase
pdb|3N5M|D Chain D, Crystals Structure Of A Bacillus Anthracis
Aminotransferase
Length = 452
Score = 28.1 bits (61), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 16/59 (27%), Positives = 26/59 (44%), Gaps = 5/59 (8%)
Query: 22 AYSPIMEAIGNAKTIRNDNRSRFGKFTELHFNKHYNIIGASMRTCHFAIGNAKTIRNDN 80
AY P+ +A ++ + F E F +H N G + C A+ N + I N+N
Sbjct: 289 AYLPL-----SATAVKREIYEAFKGKGEYEFFRHINTFGGNPAACALALKNLEIIENEN 342
>pdb|3M1G|A Chain A, The Structure Of A Putative Glutathione S-Transferase From
Corynebacterium Glutamicum
pdb|3M1G|B Chain B, The Structure Of A Putative Glutathione S-Transferase From
Corynebacterium Glutamicum
pdb|3M1G|C Chain C, The Structure Of A Putative Glutathione S-Transferase From
Corynebacterium Glutamicum
Length = 362
Score = 27.7 bits (60), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 14/50 (28%), Positives = 26/50 (52%), Gaps = 6/50 (12%)
Query: 123 YHVFYQLCCARDKYPYLLLDEPDSFQYIRECCEIPGVNDEEGFEETQQAF 172
YH ++ C R+K + + P+ + Y+R+ + PG D F E +Q +
Sbjct: 259 YHGHFK--CGRNK----ITEXPNLWGYLRDLFQTPGFGDTTDFTEIKQHY 302
>pdb|3QCW|A Chain A, Structure Of Neurexin 1 Alpha (Domains Lns1-Lns6), No Splice
Inserts
pdb|3QCW|B Chain B, Structure Of Neurexin 1 Alpha (Domains Lns1-Lns6), No Splice
Inserts
Length = 1245
Score = 27.3 bits (59), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 18/75 (24%), Positives = 35/75 (46%), Gaps = 3/75 (4%)
Query: 14 TQVEKKVLAYSPIMEAIGNAKTIRNDNRSRFGKFTELHFNKHYNIIGASMRTCHFAIGNA 73
T+ ++ + +S + + A +R D+ S G + ELH ++ + ++ T AI +
Sbjct: 1080 TRADRLAIGFSTVQK---EAVLVRVDSSSGLGDYLELHIHQGKIGVKFNVGTDDIAIEES 1136
Query: 74 KTIRNDNSSRFGKFT 88
I ND +FT
Sbjct: 1137 NAIINDGKYHVVRFT 1151
>pdb|3ASI|A Chain A, Alpha-Neurexin-1 Ectodomain Fragment; Lns5-Egf3-Lns6
Length = 410
Score = 27.3 bits (59), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 18/76 (23%), Positives = 35/76 (46%), Gaps = 3/76 (3%)
Query: 13 ETQVEKKVLAYSPIMEAIGNAKTIRNDNRSRFGKFTELHFNKHYNIIGASMRTCHFAIGN 72
T+ ++ + +S + + A +R D+ S G + ELH ++ + ++ T AI
Sbjct: 247 STRADRLAIGFSTVQK---EAVLVRVDSSSGLGDYLELHIHQGKIGVKFNVGTDDIAIEE 303
Query: 73 AKTIRNDNSSRFGKFT 88
+ I ND +FT
Sbjct: 304 SNAIINDGKYHVVRFT 319
>pdb|3POY|A Chain A, Crystal Structure Of The Alpha-Neurexin-1 Ectodomain, Lns
2-6
Length = 1019
Score = 27.3 bits (59), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 18/75 (24%), Positives = 35/75 (46%), Gaps = 3/75 (4%)
Query: 14 TQVEKKVLAYSPIMEAIGNAKTIRNDNRSRFGKFTELHFNKHYNIIGASMRTCHFAIGNA 73
T+ ++ + +S + + A +R D+ S G + ELH ++ + ++ T AI +
Sbjct: 864 TRADRLAIGFSTVQK---EAVLVRVDSSSGLGDYLELHIHQGKIGVKFNVGTDDIAIEES 920
Query: 74 KTIRNDNSSRFGKFT 88
I ND +FT
Sbjct: 921 NAIINDGKYHVVRFT 935
>pdb|3R05|A Chain A, Structure Of Neurexin 1 Alpha (Domains Lns1-Lns6), With
Splice Insert Ss3
pdb|3R05|B Chain B, Structure Of Neurexin 1 Alpha (Domains Lns1-Lns6), With
Splice Insert Ss3
Length = 1254
Score = 27.3 bits (59), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 18/75 (24%), Positives = 35/75 (46%), Gaps = 3/75 (4%)
Query: 14 TQVEKKVLAYSPIMEAIGNAKTIRNDNRSRFGKFTELHFNKHYNIIGASMRTCHFAIGNA 73
T+ ++ + +S + + A +R D+ S G + ELH ++ + ++ T AI +
Sbjct: 1089 TRADRLAIGFSTVQK---EAVLVRVDSSSGLGDYLELHIHQGKIGVKFNVGTDDIAIEES 1145
Query: 74 KTIRNDNSSRFGKFT 88
I ND +FT
Sbjct: 1146 NAIINDGKYHVVRFT 1160
>pdb|1C4R|A Chain A, The Structure Of The Ligand-Binding Domain Of Neurexin
1beta: Regulation Of Lns Domain Function By Alternative
Splicing
pdb|1C4R|B Chain B, The Structure Of The Ligand-Binding Domain Of Neurexin
1beta: Regulation Of Lns Domain Function By Alternative
Splicing
pdb|1C4R|C Chain C, The Structure Of The Ligand-Binding Domain Of Neurexin
1beta: Regulation Of Lns Domain Function By Alternative
Splicing
pdb|1C4R|D Chain D, The Structure Of The Ligand-Binding Domain Of Neurexin
1beta: Regulation Of Lns Domain Function By Alternative
Splicing
pdb|1C4R|E Chain E, The Structure Of The Ligand-Binding Domain Of Neurexin
1beta: Regulation Of Lns Domain Function By Alternative
Splicing
pdb|1C4R|F Chain F, The Structure Of The Ligand-Binding Domain Of Neurexin
1beta: Regulation Of Lns Domain Function By Alternative
Splicing
pdb|1C4R|G Chain G, The Structure Of The Ligand-Binding Domain Of Neurexin
1beta: Regulation Of Lns Domain Function By Alternative
Splicing
pdb|1C4R|H Chain H, The Structure Of The Ligand-Binding Domain Of Neurexin
1beta: Regulation Of Lns Domain Function By Alternative
Splicing
Length = 182
Score = 26.9 bits (58), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 18/76 (23%), Positives = 35/76 (46%), Gaps = 3/76 (3%)
Query: 13 ETQVEKKVLAYSPIMEAIGNAKTIRNDNRSRFGKFTELHFNKHYNIIGASMRTCHFAIGN 72
T+ ++ + +S + + A +R D+ S G + ELH ++ + ++ T AI
Sbjct: 27 STRADRLAIGFSTVQK---EAVLVRVDSSSGLGDYLELHIHQGKIGVKFNVGTDDIAIEE 83
Query: 73 AKTIRNDNSSRFGKFT 88
+ I ND +FT
Sbjct: 84 SNAIINDGKYHVVRFT 99
>pdb|3BOD|A Chain A, Structure Of Mouse Beta-Neurexin 1
Length = 178
Score = 26.9 bits (58), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 18/76 (23%), Positives = 35/76 (46%), Gaps = 3/76 (3%)
Query: 13 ETQVEKKVLAYSPIMEAIGNAKTIRNDNRSRFGKFTELHFNKHYNIIGASMRTCHFAIGN 72
T+ ++ + +S + + A +R D+ S G + ELH ++ + ++ T AI
Sbjct: 27 STRADRLAIGFSTVQK---EAVLVRVDSSSGLGDYLELHIHQGKIGVKFNVGTDDIAIEE 83
Query: 73 AKTIRNDNSSRFGKFT 88
+ I ND +FT
Sbjct: 84 SNAIINDGKYHVVRFT 99
>pdb|3VKF|C Chain C, Crystal Structure Of Neurexin 1betaNEUROLIGIN 1 COMPLEX
pdb|3VKF|D Chain D, Crystal Structure Of Neurexin 1betaNEUROLIGIN 1 COMPLEX
Length = 181
Score = 26.9 bits (58), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 21/78 (26%), Positives = 35/78 (44%), Gaps = 7/78 (8%)
Query: 13 ETQVEKKVLAYSPIMEAIGNAKTIRNDNRSRFGKFTELHFNKHYNIIGA--SMRTCHFAI 70
T+ ++ + +S + + A +R D+ S G + ELH H IG ++ T AI
Sbjct: 26 STRADRLAIGFSTVQK---EAVLVRVDSSSGLGDYLELHI--HQGKIGVKFNVGTDDIAI 80
Query: 71 GNAKTIRNDNSSRFGKFT 88
+ I ND +FT
Sbjct: 81 EESNAIINDGKYHVVRFT 98
>pdb|3B3Q|E Chain E, Crystal Structure Of A Synaptic Adhesion Complex
pdb|3B3Q|F Chain F, Crystal Structure Of A Synaptic Adhesion Complex
Length = 197
Score = 26.9 bits (58), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 18/76 (23%), Positives = 35/76 (46%), Gaps = 3/76 (3%)
Query: 13 ETQVEKKVLAYSPIMEAIGNAKTIRNDNRSRFGKFTELHFNKHYNIIGASMRTCHFAIGN 72
T+ ++ + +S + + A +R D+ S G + ELH ++ + ++ T AI
Sbjct: 35 STRADRLAIGFSTVQK---EAVLVRVDSSSGLGDYLELHIHQGKIGVKFNVGTDDIAIEE 91
Query: 73 AKTIRNDNSSRFGKFT 88
+ I ND +FT
Sbjct: 92 SNAIINDGKYHVVRFT 107
>pdb|2WQZ|C Chain C, Crystal Structure Of Synaptic Protein Neuroligin-4 In
Complex With Neurexin-beta 1: Alternative Refinement
pdb|2WQZ|D Chain D, Crystal Structure Of Synaptic Protein Neuroligin-4 In
Complex With Neurexin-beta 1: Alternative Refinement
pdb|2XB6|C Chain C, Revisited Crystal Structure Of Neurexin1beta-neuroligin4
Complex
pdb|2XB6|D Chain D, Revisited Crystal Structure Of Neurexin1beta-neuroligin4
Complex
Length = 179
Score = 26.9 bits (58), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 18/76 (23%), Positives = 35/76 (46%), Gaps = 3/76 (3%)
Query: 13 ETQVEKKVLAYSPIMEAIGNAKTIRNDNRSRFGKFTELHFNKHYNIIGASMRTCHFAIGN 72
T+ ++ + +S + + A +R D+ S G + ELH ++ + ++ T AI
Sbjct: 28 STRADRLAIGFSTVQK---EAVLVRVDSSSGLGDYLELHIHQGKIGVKFNVGTDDIAIEE 84
Query: 73 AKTIRNDNSSRFGKFT 88
+ I ND +FT
Sbjct: 85 SNAIINDGKYHVVRFT 100
>pdb|3BIW|E Chain E, Crystal Structure Of The Neuroligin-1NEUREXIN-1beta
Synaptic Adhesion Complex
pdb|3BIW|F Chain F, Crystal Structure Of The Neuroligin-1NEUREXIN-1beta
Synaptic Adhesion Complex
pdb|3BIW|G Chain G, Crystal Structure Of The Neuroligin-1NEUREXIN-1beta
Synaptic Adhesion Complex
pdb|3BIW|H Chain H, Crystal Structure Of The Neuroligin-1NEUREXIN-1beta
Synaptic Adhesion Complex
Length = 243
Score = 26.6 bits (57), Expect = 8.2, Method: Compositional matrix adjust.
Identities = 18/76 (23%), Positives = 35/76 (46%), Gaps = 3/76 (3%)
Query: 13 ETQVEKKVLAYSPIMEAIGNAKTIRNDNRSRFGKFTELHFNKHYNIIGASMRTCHFAIGN 72
T+ ++ + +S + + A +R D+ S G + ELH ++ + ++ T AI
Sbjct: 75 STRADRLAIGFSTVQK---EAVLVRVDSSSGLGDYLELHIHQGKIGVKFNVGTDDIAIEE 131
Query: 73 AKTIRNDNSSRFGKFT 88
+ I ND +FT
Sbjct: 132 SNAIINDGKYHVVRFT 147
>pdb|2R1D|A Chain A, Crystal Structure Of Rat Neurexin 1beta In The Ca2+
Containing Form
pdb|2R1D|B Chain B, Crystal Structure Of Rat Neurexin 1beta In The Ca2+
Containing Form
pdb|2R1D|C Chain C, Crystal Structure Of Rat Neurexin 1beta In The Ca2+
Containing Form
pdb|2R1D|D Chain D, Crystal Structure Of Rat Neurexin 1beta In The Ca2+
Containing Form
pdb|2R1D|E Chain E, Crystal Structure Of Rat Neurexin 1beta In The Ca2+
Containing Form
pdb|2R1D|F Chain F, Crystal Structure Of Rat Neurexin 1beta In The Ca2+
Containing Form
pdb|2R1D|G Chain G, Crystal Structure Of Rat Neurexin 1beta In The Ca2+
Containing Form
pdb|2R1D|H Chain H, Crystal Structure Of Rat Neurexin 1beta In The Ca2+
Containing Form
pdb|2R1D|I Chain I, Crystal Structure Of Rat Neurexin 1beta In The Ca2+
Containing Form
pdb|2R1D|W Chain W, Crystal Structure Of Rat Neurexin 1beta In The Ca2+
Containing Form
Length = 226
Score = 26.2 bits (56), Expect = 9.9, Method: Compositional matrix adjust.
Identities = 18/76 (23%), Positives = 35/76 (46%), Gaps = 3/76 (3%)
Query: 13 ETQVEKKVLAYSPIMEAIGNAKTIRNDNRSRFGKFTELHFNKHYNIIGASMRTCHFAIGN 72
T+ ++ + +S + + A +R D+ S G + ELH ++ + ++ T AI
Sbjct: 61 STRADRLAIGFSTVQK---EAVLVRVDSSSGLGDYLELHIHQGKIGVKFNVGTDDIAIEE 117
Query: 73 AKTIRNDNSSRFGKFT 88
+ I ND +FT
Sbjct: 118 SNAIINDGKYHVVRFT 133
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.322 0.136 0.410
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,436,644
Number of Sequences: 62578
Number of extensions: 217891
Number of successful extensions: 516
Number of sequences better than 100.0: 78
Number of HSP's better than 100.0 without gapping: 61
Number of HSP's successfully gapped in prelim test: 17
Number of HSP's that attempted gapping in prelim test: 343
Number of HSP's gapped (non-prelim): 149
length of query: 178
length of database: 14,973,337
effective HSP length: 92
effective length of query: 86
effective length of database: 9,216,161
effective search space: 792589846
effective search space used: 792589846
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 48 (23.1 bits)