Query psy15660
Match_columns 178
No_of_seqs 171 out of 1160
Neff 7.6
Searched_HMMs 46136
Date Fri Aug 16 18:21:14 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy15660.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/15660hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG5022 Myosin heavy chain [Cy 100.0 4.1E-44 8.8E-49 334.7 3.1 138 1-178 173-316 (1463)
2 PTZ00014 myosin-A; Provisional 100.0 3.2E-43 7E-48 323.8 5.6 138 1-178 204-344 (821)
3 cd01380 MYSc_type_V Myosin mot 100.0 6E-41 1.3E-45 305.5 5.0 138 1-178 107-252 (691)
4 cd01377 MYSc_type_II Myosin mo 100.0 9.3E-41 2E-45 304.3 5.5 138 1-178 112-261 (693)
5 cd01381 MYSc_type_VII Myosin m 100.0 1E-40 2.2E-45 303.0 4.6 136 1-178 107-246 (671)
6 cd01383 MYSc_type_VIII Myosin 100.0 3.1E-40 6.7E-45 300.0 4.7 135 1-178 113-251 (677)
7 cd01384 MYSc_type_XI Myosin mo 100.0 5.8E-40 1.3E-44 298.0 5.3 138 1-178 109-251 (674)
8 cd01385 MYSc_type_IX Myosin mo 100.0 7.2E-40 1.6E-44 298.3 5.3 138 1-178 115-257 (692)
9 cd01386 MYSc_type_XVIII Myosin 100.0 2.9E-39 6.3E-44 296.5 5.9 138 1-178 107-249 (767)
10 cd01378 MYSc_type_I Myosin mot 100.0 2.5E-39 5.4E-44 294.2 4.8 138 1-178 107-249 (674)
11 cd01382 MYSc_type_VI Myosin mo 100.0 3.5E-39 7.5E-44 294.8 5.0 136 1-178 112-277 (717)
12 smart00242 MYSc Myosin. Large 100.0 8.6E-39 1.9E-43 291.3 5.5 138 1-178 113-255 (677)
13 cd00124 MYSc Myosin motor doma 100.0 1E-38 2.3E-43 291.0 5.8 137 1-178 107-247 (679)
14 cd01379 MYSc_type_III Myosin m 100.0 1.9E-38 4.2E-43 287.3 7.3 137 1-178 107-252 (653)
15 cd01387 MYSc_type_XV Myosin mo 100.0 1.2E-38 2.6E-43 289.7 5.1 136 1-178 108-247 (677)
16 KOG0164|consensus 100.0 5.8E-39 1.3E-43 283.8 -0.6 138 1-178 115-259 (1001)
17 KOG0162|consensus 100.0 5.1E-37 1.1E-41 271.9 2.4 138 1-178 125-267 (1106)
18 PF00063 Myosin_head: Myosin h 100.0 9.8E-37 2.1E-41 278.8 1.8 138 1-178 106-250 (689)
19 KOG0163|consensus 100.0 7.3E-36 1.6E-40 265.3 -0.4 109 1-151 165-275 (1259)
20 KOG0160|consensus 100.0 1.8E-35 4E-40 269.9 -0.3 138 1-178 115-255 (862)
21 KOG0161|consensus 100.0 1.6E-34 3.5E-39 279.7 1.0 138 1-178 189-335 (1930)
22 KOG4229|consensus 99.9 1.3E-25 2.8E-30 209.7 -0.7 136 2-178 170-310 (1062)
23 PTZ00014 myosin-A; Provisional 98.3 2.4E-07 5.1E-12 86.9 1.5 39 65-103 228-266 (821)
24 COG5022 Myosin heavy chain [Cy 98.2 4.7E-07 1E-11 87.3 1.5 38 65-102 199-236 (1463)
25 cd01377 MYSc_type_II Myosin mo 98.2 4.8E-07 1E-11 83.6 1.5 38 66-103 145-182 (693)
26 cd01379 MYSc_type_III Myosin m 98.2 5.4E-07 1.2E-11 82.7 1.5 39 65-103 130-168 (653)
27 cd01386 MYSc_type_XVIII Myosin 98.2 5.7E-07 1.2E-11 83.9 1.6 40 64-103 130-169 (767)
28 cd01381 MYSc_type_VII Myosin m 98.2 5.6E-07 1.2E-11 82.9 1.3 39 65-103 129-167 (671)
29 cd01380 MYSc_type_V Myosin mot 98.2 6.1E-07 1.3E-11 82.9 1.5 39 65-103 135-173 (691)
30 cd01385 MYSc_type_IX Myosin mo 98.2 6.2E-07 1.3E-11 82.9 1.5 39 65-103 140-178 (692)
31 cd01383 MYSc_type_VIII Myosin 98.1 9.4E-07 2E-11 81.5 1.5 39 65-103 134-172 (677)
32 cd01382 MYSc_type_VI Myosin mo 98.1 1.2E-06 2.6E-11 81.3 1.6 39 65-103 134-172 (717)
33 KOG0163|consensus 98.1 2.8E-06 6.1E-11 77.7 3.6 38 66-103 188-225 (1259)
34 cd01384 MYSc_type_XI Myosin mo 98.1 1.3E-06 2.7E-11 80.6 1.2 39 65-103 135-173 (674)
35 cd00124 MYSc Myosin motor doma 98.0 2.4E-06 5.3E-11 78.9 1.6 39 65-103 130-168 (679)
36 cd01378 MYSc_type_I Myosin mot 98.0 2.2E-06 4.7E-11 79.1 1.2 39 65-103 132-170 (674)
37 smart00242 MYSc Myosin. Large 98.0 2.3E-06 5E-11 79.0 1.2 39 65-103 138-176 (677)
38 KOG0161|consensus 98.0 9.3E-07 2E-11 88.2 -1.5 131 24-176 220-353 (1930)
39 cd01387 MYSc_type_XV Myosin mo 97.8 5.8E-06 1.3E-10 76.3 1.3 38 65-103 131-168 (677)
40 KOG0164|consensus 97.7 1.3E-05 2.8E-10 73.1 1.1 38 66-103 143-180 (1001)
41 PF00063 Myosin_head: Myosin h 97.7 1E-05 2.2E-10 74.9 0.1 38 66-103 134-171 (689)
42 KOG0162|consensus 97.1 0.00029 6.3E-09 64.7 2.9 41 136-176 243-285 (1106)
43 KOG0160|consensus 96.9 9.3E-05 2E-09 69.4 -2.4 38 66-103 140-177 (862)
44 cd01363 Motor_domain Myosin an 94.0 0.047 1E-06 42.4 2.8 39 20-58 58-97 (186)
45 KOG4229|consensus 93.7 0.024 5.1E-07 54.9 0.7 35 66-100 193-227 (1062)
46 PF08199 E2: Bacteriophage E2- 80.1 0.16 3.5E-06 28.3 -2.1 8 42-49 8-15 (37)
47 cd01363 Motor_domain Myosin an 40.2 22 0.00048 27.3 2.1 27 72-98 71-97 (186)
48 COG3970 Fumarylacetoacetate (F 31.7 78 0.0017 27.1 4.1 81 27-123 169-277 (379)
49 PF01581 FARP: FMRFamide relat 30.1 28 0.0006 14.5 0.6 9 38-46 3-11 (11)
50 PF02852 Pyr_redox_dim: Pyridi 28.9 43 0.00094 23.1 1.9 18 47-64 50-68 (110)
51 PF07499 RuvA_C: RuvA, C-termi 27.7 65 0.0014 19.0 2.3 15 164-178 2-16 (47)
52 PRK05783 hypothetical protein; 25.2 48 0.001 22.6 1.5 16 40-55 36-51 (84)
53 PF11405 Inhibitor_I67: Bromel 24.7 51 0.0011 18.6 1.3 12 42-53 23-34 (41)
No 1
>COG5022 Myosin heavy chain [Cytoskeleton]
Probab=100.00 E-value=4.1e-44 Score=334.68 Aligned_cols=138 Identities=49% Similarity=0.826 Sum_probs=120.6
Q ss_pred CceEEeeeCCCC--cchhhHHHHhhhhHHHHhccccccCCCCCCCcceeEEEeeccccccccceeeeeeeeccccccccc
Q psy15660 1 MRYFATVGGSQT--ETQVEKKVLAYSPIMEAIGNAKTIRNDNRSRFGKFTELHFNKHYNIIGASMRTCHFAIGNAKTIRN 78 (178)
Q Consensus 1 ~~~~~~~~~~~~--~~~~~~~~~~~~~ileafgna~t~rN~NSSRFGKfi~l~f~~~g~i~Ga~I~~ylle~~~~~~~rN 78 (178)
|||||.++++.. .+.+|++|+++||||||||||||+||||||||||||+|.||++|.|+||+|++
T Consensus 173 mqYlasv~~s~~~~~~~iE~~ILaTNPILEAFGNAkTvRNdNSSRFGKyikI~Fd~~g~I~GA~I~~------------- 239 (1463)
T COG5022 173 MQYLASVTSSSTVEISSIEKQILATNPILEAFGNAKTVRNDNSSRFGKYIKIEFDENGEICGAKIET------------- 239 (1463)
T ss_pred HHHHHHhccCCcchHHHHHHHHHhcchHHHHhccccccccCCcccccceEEEEECCCCceechhhhh-------------
Confidence 799999987654 36899999999999999999999999999999999999999776555555554
Q ss_pred CCCCcceeeEEEEecccccccccchhhhccccceEEeecCCCCcceEeeeeccCCCC-C-cccCCCCccchhhhh--hcc
Q psy15660 79 DNSSRFGKFTELHFNKHYNIIGASMRTYLLEKSRVVFQAPNERNYHVFYQLCCARDK-Y-PYLLLDEPDSFQYIR--ECC 154 (178)
Q Consensus 79 ~nssrf~~~~~~~f~~~~~i~Ga~~~~~llEk~Rv~~~~~~Ernfhifyql~~~~~e-~-~~l~l~d~~~f~~l~--~~~ 154 (178)
|||||+||+.|+.+|||||||||+++|.++ . ..+++.++++|.||+ +|.
T Consensus 240 ---------------------------YLLEKSRVV~Q~~~ERNYHIFYQll~G~~~~~k~~~~~~~~~dY~Yl~~~~~~ 292 (1463)
T COG5022 240 ---------------------------YLLEKSRVVHQNKNERNYHIFYQLLAGDPEELKKLLLLQNPKDYIYLSQGGCD 292 (1463)
T ss_pred ---------------------------hhhhhhhhccCCCCccchhhhhhHhcCChHHHHHHhhccChHhhHhHhhcCCC
Confidence 456899999999999999999999987443 2 356678999999998 588
Q ss_pred CCCCCChHHHHHHHHHHHHhcCCC
Q psy15660 155 EIPGVNDEEGFEETQQAFVTLGEN 178 (178)
Q Consensus 155 ~i~g~~d~e~~~~l~~Al~~LG~~ 178 (178)
.++|++|.++|..++.||.++||+
T Consensus 293 ~I~gIdD~kefk~t~~AlktiGi~ 316 (1463)
T COG5022 293 KIDGIDDAKEFKITLDALKTIGID 316 (1463)
T ss_pred cCCCcccHHHHHHHHHHHHHhCCC
Confidence 999999999999999999999985
No 2
>PTZ00014 myosin-A; Provisional
Probab=100.00 E-value=3.2e-43 Score=323.85 Aligned_cols=138 Identities=39% Similarity=0.706 Sum_probs=123.2
Q ss_pred CceEEeeeCCCCcchhhHHHHhhhhHHHHhccccccCCCCCCCcceeEEEeeccccccccceeeeeeeecccccccccCC
Q psy15660 1 MRYFATVGGSQTETQVEKKVLAYSPIMEAIGNAKTIRNDNRSRFGKFTELHFNKHYNIIGASMRTCHFAIGNAKTIRNDN 80 (178)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~ileafgna~t~rN~NSSRFGKfi~l~f~~~g~i~Ga~I~~ylle~~~~~~~rN~n 80 (178)
|+|||.++++.....++++|+++||||||||||||+||||||||||||+|+|+.+|.|.||+|++||
T Consensus 204 m~yla~~~~~~~~~~ie~~Il~sNpiLEAFGNAKT~rNdNSSRFGKfi~i~F~~~g~i~Ga~I~~YL------------- 270 (821)
T PTZ00014 204 MRYFASSKSGNMDLKIQNAIMAANPVLEAFGNAKTIRNNNSSRFGRFMQLQLGEEGGIRYGSIVAFL------------- 270 (821)
T ss_pred HHHHHHhccCCCcccHHHHHHHHHHHHHHhhccCcCCCCCcCcceeEEEEEEcCCCcEeeEEEEEEe-------------
Confidence 6899988766555689999999999999999999999999999999999999988777777777666
Q ss_pred CCcceeeEEEEecccccccccchhhhccccceEEeecCCCCcceEeeeeccCC--CCCcccCCCCccchhhhh-hccCCC
Q psy15660 81 SSRFGKFTELHFNKHYNIIGASMRTYLLEKSRVVFQAPNERNYHVFYQLCCAR--DKYPYLLLDEPDSFQYIR-ECCEIP 157 (178)
Q Consensus 81 ssrf~~~~~~~f~~~~~i~Ga~~~~~llEk~Rv~~~~~~Ernfhifyql~~~~--~e~~~l~l~d~~~f~~l~-~~~~i~ 157 (178)
|||+||+.|+++|||||||||++++. +++..++|.++.+|+|++ ++.+++
T Consensus 271 ---------------------------LEKSRVv~q~~gERNfHIFYqLl~G~~~~~~~~l~L~~~~~y~yL~~~~~~~~ 323 (821)
T PTZ00014 271 ---------------------------LEKSRVVTQEDDERSYHIFYQLLKGANDEMKEKYKLKSLEEYKYINPKCLDVP 323 (821)
T ss_pred ---------------------------ccCceeeecCCCCCCEeHHHHHHhCCCHHHHHHcCCCChHhccccCCCCccCC
Confidence 57899999999999999999999763 345678999999999998 678899
Q ss_pred CCChHHHHHHHHHHHHhcCCC
Q psy15660 158 GVNDEEGFEETQQAFVTLGEN 178 (178)
Q Consensus 158 g~~d~e~~~~l~~Al~~LG~~ 178 (178)
|++|.++|..++.||..|||+
T Consensus 324 ~~dD~~~f~~~~~A~~~lg~s 344 (821)
T PTZ00014 324 GIDDVKDFEEVMESFDSMGLS 344 (821)
T ss_pred CCchHHHHHHHHHHHHHcCCC
Confidence 999999999999999999996
No 3
>cd01380 MYSc_type_V Myosin motor domain, type V myosins. Myosins V transport a variety of intracellular cargo processively along actin filaments, such as membraneous organelles and mRNA. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an act
Probab=100.00 E-value=6e-41 Score=305.53 Aligned_cols=138 Identities=60% Similarity=0.925 Sum_probs=121.2
Q ss_pred CceEEeeeCCC----CcchhhHHHHhhhhHHHHhccccccCCCCCCCcceeEEEeeccccccccceeeeeeeeccccccc
Q psy15660 1 MRYFATVGGSQ----TETQVEKKVLAYSPIMEAIGNAKTIRNDNRSRFGKFTELHFNKHYNIIGASMRTCHFAIGNAKTI 76 (178)
Q Consensus 1 ~~~~~~~~~~~----~~~~~~~~~~~~~~ileafgna~t~rN~NSSRFGKfi~l~f~~~g~i~Ga~I~~ylle~~~~~~~ 76 (178)
|+|||.++++. ....+++||+++||||||||||||+|||||||||||++|+|+.+|.|.||+|++||
T Consensus 107 ~~yLa~~~~~~~~~~~~~~i~~~il~snpiLEAFGNAkT~~N~NSSRFGK~~~l~f~~~g~i~Ga~i~~yL--------- 177 (691)
T cd01380 107 MRYFASVGGSDSREVSETQVEEKVLASNPIMEAFGNAKTTRNDNSSRFGKYIQILFDKRGRIIGANMRTYL--------- 177 (691)
T ss_pred HHHHHHhcCCCcccccccCHHHHHHHHHHHHHHhhcCCCCCCCCccccceEEEEEECCCCCEEEEEEEEee---------
Confidence 68999998754 24679999999999999999999999999999999999999987766666666665
Q ss_pred ccCCCCcceeeEEEEecccccccccchhhhccccceEEeecCCCCcceEeeeeccC--CCCCcccCCCCccchhhhh--h
Q psy15660 77 RNDNSSRFGKFTELHFNKHYNIIGASMRTYLLEKSRVVFQAPNERNYHVFYQLCCA--RDKYPYLLLDEPDSFQYIR--E 152 (178)
Q Consensus 77 rN~nssrf~~~~~~~f~~~~~i~Ga~~~~~llEk~Rv~~~~~~Ernfhifyql~~~--~~e~~~l~l~d~~~f~~l~--~ 152 (178)
|||+||+.++++|||||||||++++ .++++.++|.++++|+|+. +
T Consensus 178 -------------------------------LEksRv~~~~~gErnfHIFYqLl~g~~~~~~~~l~L~~~~~y~yl~~~~ 226 (691)
T cd01380 178 -------------------------------LEKSRVVFQAPGERNYHIFYQLCAGAPSQELKELHLGHADKFNYLNQGG 226 (691)
T ss_pred -------------------------------ccccceeecCCCCChhHHHHHHHhCCCHHHHHHhCCCCHHHCccccCCC
Confidence 5789999999999999999999976 3456789999999999997 4
Q ss_pred ccCCCCCChHHHHHHHHHHHHhcCCC
Q psy15660 153 CCEIPGVNDEEGFEETQQAFVTLGEN 178 (178)
Q Consensus 153 ~~~i~g~~d~e~~~~l~~Al~~LG~~ 178 (178)
+..+++++|.++|..++.||..|||+
T Consensus 227 ~~~~~~~~d~~~f~~~~~al~~lg~s 252 (691)
T cd01380 227 APTIEGVDDAEDFNATVQALTLLGIS 252 (691)
T ss_pred CccCCCCChHHHHHHHHHHHHHcCCC
Confidence 56788999999999999999999996
No 4
>cd01377 MYSc_type_II Myosin motor domain, type II myosins. Myosin II mediates cortical contraction in cell motility, and is the motor in smooth and skeletal muscle. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an actin filament. ATP hydro
Probab=100.00 E-value=9.3e-41 Score=304.35 Aligned_cols=138 Identities=48% Similarity=0.779 Sum_probs=119.4
Q ss_pred CceEEeeeCCCC--------cchhhHHHHhhhhHHHHhccccccCCCCCCCcceeEEEeeccccccccceeeeeeeeccc
Q psy15660 1 MRYFATVGGSQT--------ETQVEKKVLAYSPIMEAIGNAKTIRNDNRSRFGKFTELHFNKHYNIIGASMRTCHFAIGN 72 (178)
Q Consensus 1 ~~~~~~~~~~~~--------~~~~~~~~~~~~~ileafgna~t~rN~NSSRFGKfi~l~f~~~g~i~Ga~I~~ylle~~~ 72 (178)
|+|||.++++.. ...++++|+++||||||||||||+|||||||||||++|+|+.+|.|.||+|.+||
T Consensus 112 l~yLa~~~~~~~~~~~~~~~~~~i~~~il~snpiLEAFGNAkT~rN~NSSRFGK~i~l~f~~~g~i~Ga~i~~yL----- 186 (693)
T cd01377 112 IQYLASVAASSKKKKQSGKGQGTLEDQILQANPILEAFGNAKTVRNDNSSRFGKFIRIHFGNTGKIAGADIETYL----- 186 (693)
T ss_pred HHHHHhhcCCCCcccccccccccHHHHHHHHHHHHHHhhccccCCCCCccccceeEEEEECCCCCEEEEEEEEEe-----
Confidence 689998886532 3579999999999999999999999999999999999999987777777666665
Q ss_pred ccccccCCCCcceeeEEEEecccccccccchhhhccccceEEeecCCCCcceEeeeeccC--CCCCcccCCCCc-cchhh
Q psy15660 73 AKTIRNDNSSRFGKFTELHFNKHYNIIGASMRTYLLEKSRVVFQAPNERNYHVFYQLCCA--RDKYPYLLLDEP-DSFQY 149 (178)
Q Consensus 73 ~~~~rN~nssrf~~~~~~~f~~~~~i~Ga~~~~~llEk~Rv~~~~~~Ernfhifyql~~~--~~e~~~l~l~d~-~~f~~ 149 (178)
|||+||+.++++|||||||||+++| .+++..++|.+. ++|+|
T Consensus 187 -----------------------------------LEksRVv~q~~gERNfHIFYqLl~G~~~~~~~~l~L~~~~~~y~y 231 (693)
T cd01377 187 -----------------------------------LEKSRVVFQASGERNYHIFYQLLSGADPELKSMLLLTGNPNDYRY 231 (693)
T ss_pred -----------------------------------cccCceeecCCCCCcHHHHHHHHcCCCHHHHHHcCCCCchhcCee
Confidence 5789999999999999999999976 345667888776 89999
Q ss_pred hh-hccCCCCCChHHHHHHHHHHHHhcCCC
Q psy15660 150 IR-ECCEIPGVNDEEGFEETQQAFVTLGEN 178 (178)
Q Consensus 150 l~-~~~~i~g~~d~e~~~~l~~Al~~LG~~ 178 (178)
+. +...+++++|.+.|..++.||..|||+
T Consensus 232 L~~~~~~~~~~~d~~~f~~~~~al~~lG~~ 261 (693)
T cd01377 232 LSQGELTIPGVDDAEEFKLTDEAFDILGFS 261 (693)
T ss_pred eCCCCccCCCCcHHHHHHHHHHHHHHcCCC
Confidence 98 455678999999999999999999986
No 5
>cd01381 MYSc_type_VII Myosin motor domain, type VII myosins. Myosins in this group have been associated with functions in sensory systems such as vision and hearing. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an actin filament. ATP hydr
Probab=100.00 E-value=1e-40 Score=302.99 Aligned_cols=136 Identities=42% Similarity=0.723 Sum_probs=120.3
Q ss_pred CceEEeeeCCCCcchhhHHHHhhhhHHHHhccccccCCCCCCCcceeEEEeeccccccccceeeeeeeecccccccccCC
Q psy15660 1 MRYFATVGGSQTETQVEKKVLAYSPIMEAIGNAKTIRNDNRSRFGKFTELHFNKHYNIIGASMRTCHFAIGNAKTIRNDN 80 (178)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~ileafgna~t~rN~NSSRFGKfi~l~f~~~g~i~Ga~I~~ylle~~~~~~~rN~n 80 (178)
|+|||.++|+. ..++++|+++||||||||||||+|||||||||||++|+|+..|.|.||+|++||
T Consensus 107 ~~yLa~~s~~~--~~i~~~il~snpiLEAFGNAkT~~N~NSSRFGK~~~l~F~~~g~i~Ga~i~~yL------------- 171 (671)
T cd01381 107 LQYLAAISGKH--SWIEQQILEANPILEAFGNAKTIRNDNSSRFGKYIDIHFNKRGAIEGAKIEQYL------------- 171 (671)
T ss_pred HHHHHHhcCCC--CcHHHHHHHHHHHHHHhhccccCCCCCccccceeEEEEECCCCcEEEEEEEEEe-------------
Confidence 68999887653 569999999999999999999999999999999999999987766666666665
Q ss_pred CCcceeeEEEEecccccccccchhhhccccceEEeecCCCCcceEeeeeccC--CCCCcccCCCCccchhhhh--hccCC
Q psy15660 81 SSRFGKFTELHFNKHYNIIGASMRTYLLEKSRVVFQAPNERNYHVFYQLCCA--RDKYPYLLLDEPDSFQYIR--ECCEI 156 (178)
Q Consensus 81 ssrf~~~~~~~f~~~~~i~Ga~~~~~llEk~Rv~~~~~~Ernfhifyql~~~--~~e~~~l~l~d~~~f~~l~--~~~~i 156 (178)
|||+||+.++++|||||||||++++ .+++..++|.++.+|+|+. ++..+
T Consensus 172 ---------------------------LEksRV~~q~~gERnfHIFYqLl~g~~~~~~~~l~L~~~~~y~yL~~~~~~~~ 224 (671)
T cd01381 172 ---------------------------LEKSRIVRQARDERNYHIFYCMLAGLSTDEKERLKLGEASDYHYLAQGGCITC 224 (671)
T ss_pred ---------------------------ccCCceeecCCCCCcHHHHHHHHcCCCHHHHHHcCCCChhhceeecCCCCccC
Confidence 5789999999999999999999976 3456788999999999997 46788
Q ss_pred CCCChHHHHHHHHHHHHhcCCC
Q psy15660 157 PGVNDEEGFEETQQAFVTLGEN 178 (178)
Q Consensus 157 ~g~~d~e~~~~l~~Al~~LG~~ 178 (178)
++++|.++|..++.||..|||+
T Consensus 225 ~~~dD~~~f~~~~~al~~lG~~ 246 (671)
T cd01381 225 EGRDDAKDFADIRSAMKVLMFT 246 (671)
T ss_pred CCccHHHHHHHHHHHHHHcCCC
Confidence 9999999999999999999996
No 6
>cd01383 MYSc_type_VIII Myosin motor domain, plant-specific type VIII myosins, a subgroup which has been associated with endocytosis, cytokinesis, cell-to-cell coupling and gating at plasmodesmata. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates f
Probab=100.00 E-value=3.1e-40 Score=299.97 Aligned_cols=135 Identities=44% Similarity=0.725 Sum_probs=119.3
Q ss_pred CceEEeeeCCCCcchhhHHHHhhhhHHHHhccccccCCCCCCCcceeEEEeeccccccccceeeeeeeecccccccccCC
Q psy15660 1 MRYFATVGGSQTETQVEKKVLAYSPIMEAIGNAKTIRNDNRSRFGKFTELHFNKHYNIIGASMRTCHFAIGNAKTIRNDN 80 (178)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~ileafgna~t~rN~NSSRFGKfi~l~f~~~g~i~Ga~I~~ylle~~~~~~~rN~n 80 (178)
|+|||.++++. .++++|+++||||||||||||+|||||||||||++|+|+.+|.|.||+|++||
T Consensus 113 ~~yLa~~~~~~---~i~~~il~snpiLEaFGNAkT~~N~NSSRFGK~~~l~f~~~g~i~ga~i~~yL------------- 176 (677)
T cd01383 113 MQYLASLGGGS---GIEYEILQTNPILEAFGNAKTSRNDNSSRFGKLIEIHFSETGKISGAKIQTFL------------- 176 (677)
T ss_pred HHHHHhhCCCC---cHHHHHHHHHHHHHHhhccccCCCCCcCccceeEEEEECCCCcEEEEEEEEEe-------------
Confidence 68999887653 68999999999999999999999999999999999999987777777766665
Q ss_pred CCcceeeEEEEecccccccccchhhhccccceEEeecCCCCcceEeeeeccC--CCCCcccCCCCccchhhhh--hccCC
Q psy15660 81 SSRFGKFTELHFNKHYNIIGASMRTYLLEKSRVVFQAPNERNYHVFYQLCCA--RDKYPYLLLDEPDSFQYIR--ECCEI 156 (178)
Q Consensus 81 ssrf~~~~~~~f~~~~~i~Ga~~~~~llEk~Rv~~~~~~Ernfhifyql~~~--~~e~~~l~l~d~~~f~~l~--~~~~i 156 (178)
|||+||+.++++|||||||||++++ .+++..++|.++.+|+|+. ++.++
T Consensus 177 ---------------------------LEksRv~~q~~gErNfHIFYqLl~g~~~~~~~~l~L~~~~~y~yL~~~~~~~~ 229 (677)
T cd01383 177 ---------------------------LEKSRVVQCARGERSYHIFYQLCAGAPPALKEKLNLKSASEYKYLKQSCCYSI 229 (677)
T ss_pred ---------------------------cCCCceeccCCCCchhHHHHHHHcCCCHHHHHHhCCCCHHHCceecCCCcccC
Confidence 5789999999999999999999976 3345678899999999997 46788
Q ss_pred CCCChHHHHHHHHHHHHhcCCC
Q psy15660 157 PGVNDEEGFEETQQAFVTLGEN 178 (178)
Q Consensus 157 ~g~~d~e~~~~l~~Al~~LG~~ 178 (178)
++++|.++|..++.||..|||+
T Consensus 230 ~~~dd~~~f~~~~~al~~lG~~ 251 (677)
T cd01383 230 NGVDDAQRFHTLVEALDIVHIS 251 (677)
T ss_pred CCccHHHHHHHHHHHHHHcCCC
Confidence 9999999999999999999986
No 7
>cd01384 MYSc_type_XI Myosin motor domain, plant-specific type XI myosin, involved in organelle transport. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an actin filament. ATP hydrolysis causes the head to pivot and associate with a new act
Probab=100.00 E-value=5.8e-40 Score=298.02 Aligned_cols=138 Identities=46% Similarity=0.789 Sum_probs=120.5
Q ss_pred CceEEeeeCCCC--cchhhHHHHhhhhHHHHhccccccCCCCCCCcceeEEEeeccccccccceeeeeeeeccccccccc
Q psy15660 1 MRYFATVGGSQT--ETQVEKKVLAYSPIMEAIGNAKTIRNDNRSRFGKFTELHFNKHYNIIGASMRTCHFAIGNAKTIRN 78 (178)
Q Consensus 1 ~~~~~~~~~~~~--~~~~~~~~~~~~~ileafgna~t~rN~NSSRFGKfi~l~f~~~g~i~Ga~I~~ylle~~~~~~~rN 78 (178)
|+|||.++++.. ...++++|+++||||||||||||+|||||||||||++|+|+.+|.|.||+|.+||
T Consensus 109 l~yLa~~~~~~~~~~~~i~~~il~~npiLEAFGNAkT~~N~NSSRFGK~~~l~f~~~g~i~Ga~i~~yL----------- 177 (674)
T cd01384 109 MRYLAYMGGRAGVEGRTVEQQVLESNPVLEAFGNAKTVRNNNSSRFGKFVEIQFDDYGRISGAAIRTYL----------- 177 (674)
T ss_pred HHHHHhhcCCCCcccccHHHHHHHHHHHHHHhhCCCCCCCCCcchhheeEEEEECCCCcEEEEEEEEEe-----------
Confidence 689998876432 3579999999999999999999999999999999999999977766666666665
Q ss_pred CCCCcceeeEEEEecccccccccchhhhccccceEEeecCCCCcceEeeeeccC-CCCCcccCCCCccchhhhh--hccC
Q psy15660 79 DNSSRFGKFTELHFNKHYNIIGASMRTYLLEKSRVVFQAPNERNYHVFYQLCCA-RDKYPYLLLDEPDSFQYIR--ECCE 155 (178)
Q Consensus 79 ~nssrf~~~~~~~f~~~~~i~Ga~~~~~llEk~Rv~~~~~~Ernfhifyql~~~-~~e~~~l~l~d~~~f~~l~--~~~~ 155 (178)
|||+||+.++++|||||||||++++ .++++.++|.++++|+|+. ++..
T Consensus 178 -----------------------------LEksRv~~~~~gErnfHIFYqLl~g~~~~~~~l~L~~~~~y~yL~~~~~~~ 228 (674)
T cd01384 178 -----------------------------LERSRVCQISDPERNYHCFYQLCAAPPEDVKKYKLGDPKEFHYLNQSNCFE 228 (674)
T ss_pred -----------------------------cccCceeecCCCCCchhHHHHHHcCCHHHHHHcCCCChHhCccccCCCCcc
Confidence 5789999999999999999999987 3346678999999999998 4678
Q ss_pred CCCCChHHHHHHHHHHHHhcCCC
Q psy15660 156 IPGVNDEEGFEETQQAFVTLGEN 178 (178)
Q Consensus 156 i~g~~d~e~~~~l~~Al~~LG~~ 178 (178)
+++++|.++|..++.||..|||+
T Consensus 229 ~~~~~D~~~f~~~~~al~~lG~~ 251 (674)
T cd01384 229 LDGVDDAEEYLATRRAMDVVGIS 251 (674)
T ss_pred ccccchHHHHHHHHHHHHHcCCC
Confidence 88999999999999999999996
No 8
>cd01385 MYSc_type_IX Myosin motor domain, type IX myosins. Myosin IX is a processive single-headed motor, which might play a role in signalling. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an actin filament. ATP hydrolysis causes the hea
Probab=100.00 E-value=7.2e-40 Score=298.32 Aligned_cols=138 Identities=33% Similarity=0.517 Sum_probs=116.1
Q ss_pred CceEEeeeCCC-CcchhhHHHHhhhhHHHHhccccccCCCCCCCcceeEEEeeccccccccceeeeeeeecccccccccC
Q psy15660 1 MRYFATVGGSQ-TETQVEKKVLAYSPIMEAIGNAKTIRNDNRSRFGKFTELHFNKHYNIIGASMRTCHFAIGNAKTIRND 79 (178)
Q Consensus 1 ~~~~~~~~~~~-~~~~~~~~~~~~~~ileafgna~t~rN~NSSRFGKfi~l~f~~~g~i~Ga~I~~ylle~~~~~~~rN~ 79 (178)
|+|||.++++. ....++++|+++||||||||||||+|||||||||||++|+|+.+|.|.||+|++||
T Consensus 115 l~yL~~~s~~~~~~~~i~~~i~~snpiLEAFGNAkT~~N~NSSRFGK~i~l~F~~~g~i~Ga~i~~yL------------ 182 (692)
T cd01385 115 IHHLTALSQKGYAGSGVEQTILSAGPVLEAFGNAKTAHNNNSSRFGKFIQVNYRENGMVRGAVVEKYL------------ 182 (692)
T ss_pred HHHHHHhccCCccCCcHHHHHHHHHHHHHHhhccccCCCCCccccceeEEEEECCCCCEEEEEEEEee------------
Confidence 67898886432 23679999999999999999999999999999999999999977766666666665
Q ss_pred CCCcceeeEEEEecccccccccchhhhccccceEEeecCCCCcceEeeeeccCC--CCCcccCCCCccchhhhhh--ccC
Q psy15660 80 NSSRFGKFTELHFNKHYNIIGASMRTYLLEKSRVVFQAPNERNYHVFYQLCCAR--DKYPYLLLDEPDSFQYIRE--CCE 155 (178)
Q Consensus 80 nssrf~~~~~~~f~~~~~i~Ga~~~~~llEk~Rv~~~~~~Ernfhifyql~~~~--~e~~~l~l~d~~~f~~l~~--~~~ 155 (178)
|||+||+.++++|||||||||+++|. +++..+.+.+..+|+|++. +..
T Consensus 183 ----------------------------LEksRV~~q~~gERNfHIFYqll~G~~~~~~~~~~l~~~~~y~yL~~~~~~~ 234 (692)
T cd01385 183 ----------------------------LEKSRIVSQEKDERNYHVFYYLLLGASEEERKQEFLLKQPDYFYLNQHNLKI 234 (692)
T ss_pred ----------------------------cccceeeecCCCCchhHHHHHHHcCCCHHHHHHhcCCChhcCCeeCCCCCcc
Confidence 57899999999999999999999773 3455677777789999982 344
Q ss_pred CCCCChHHHHHHHHHHHHhcCCC
Q psy15660 156 IPGVNDEEGFEETQQAFVTLGEN 178 (178)
Q Consensus 156 i~g~~d~e~~~~l~~Al~~LG~~ 178 (178)
.++++|.++|..++.||+.|||+
T Consensus 235 ~~~~dd~~~f~~~~~al~~lG~~ 257 (692)
T cd01385 235 EDGEDEKHEFERLKQAMEMVGFL 257 (692)
T ss_pred CCCCCHHHHHHHHHHHHHHcCCC
Confidence 46889999999999999999986
No 9
>cd01386 MYSc_type_XVIII Myosin motor domain, type XVIII myosins. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an actin filament. ATP hydrolysis causes the head to pivot and associate with a new actin subunit. The release of Pi causes the
Probab=100.00 E-value=2.9e-39 Score=296.45 Aligned_cols=138 Identities=32% Similarity=0.356 Sum_probs=108.0
Q ss_pred CceEEeeeCCCCcchhhHHHHhhhhHHHHhccccccCCCCCCCcceeEEEeeccccccccceeeeeeeecccccccccCC
Q psy15660 1 MRYFATVGGSQTETQVEKKVLAYSPIMEAIGNAKTIRNDNRSRFGKFTELHFNKHYNIIGASMRTCHFAIGNAKTIRNDN 80 (178)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~ileafgna~t~rN~NSSRFGKfi~l~f~~~g~i~Ga~I~~ylle~~~~~~~rN~n 80 (178)
|+|||.++++.+.....++|+++||||||||||||+||||||||||||+|+|+..|.|.||+|++||
T Consensus 107 ~~yla~~~~~~~~~~~~e~i~~~npiLEAFGNAkT~rNdNSSRFGK~i~l~F~~~g~i~Ga~i~~yL------------- 173 (767)
T cd01386 107 LEYLALAAGSVDGRVSVEKVRALFTILEAFGNVSTALNGNATRFTQILSLDFDQTGQIASASLQTML------------- 173 (767)
T ss_pred HHHHHhccCCCCcccHHHHHHhhchHHHHhhccCcCCCCCcCcceeEEEEEECCCCcEeEEEEEEEe-------------
Confidence 6899999876554445678999999999999999999999999999999999987777776666665
Q ss_pred CCcceeeEEEEecccccccccchhhhccccceEEeecCCCCcceEeeeeccCC--CCCcccCCCCccc---hhhhhhccC
Q psy15660 81 SSRFGKFTELHFNKHYNIIGASMRTYLLEKSRVVFQAPNERNYHVFYQLCCAR--DKYPYLLLDEPDS---FQYIRECCE 155 (178)
Q Consensus 81 ssrf~~~~~~~f~~~~~i~Ga~~~~~llEk~Rv~~~~~~Ernfhifyql~~~~--~e~~~l~l~d~~~---f~~l~~~~~ 155 (178)
|||+||+.++++||||||||||++|. ++++.++|.+... |.+...+.+
T Consensus 174 ---------------------------LEKSRVv~q~~gERNFHIFYqLlaG~~~~~~~~l~L~~~~~~~~~~~~~~~~~ 226 (767)
T cd01386 174 ---------------------------LERSRVARRPNGETNFVVFSQLLAGVDGDLRTELHLEQMAESSSFGMGGLSKP 226 (767)
T ss_pred ---------------------------cccCceeecCCCCCcchhHHHHHhCCCHHHHHHhcCCCccccchhhcCCCCCC
Confidence 57899999999999999999999773 3445666655433 222222334
Q ss_pred CCCCChHHHHHHHHHHHHhcCCC
Q psy15660 156 IPGVNDEEGFEETQQAFVTLGEN 178 (178)
Q Consensus 156 i~g~~d~e~~~~l~~Al~~LG~~ 178 (178)
.++++|.++|..++.||.+|||+
T Consensus 227 ~d~~~D~~~f~~~~~Al~~lGfs 249 (767)
T cd01386 227 EDKQKAAIDFSRLQQAMEVLGIS 249 (767)
T ss_pred cCcccHHHHHHHHHHHHHHcCCC
Confidence 56677778888888888888875
No 10
>cd01378 MYSc_type_I Myosin motor domain, type I myosins. Myosin I generates movement at the leading edge in cell motility, and class I myosins have been implicated in phagocytosis and vesicle transport. Myosin I, an unconventional myosin, does not form dimers. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 picon
Probab=100.00 E-value=2.5e-39 Score=294.25 Aligned_cols=138 Identities=40% Similarity=0.716 Sum_probs=120.8
Q ss_pred CceEEeeeCCCC-cchhhHHHHhhhhHHHHhccccccCCCCCCCcceeEEEeeccccccccceeeeeeeecccccccccC
Q psy15660 1 MRYFATVGGSQT-ETQVEKKVLAYSPIMEAIGNAKTIRNDNRSRFGKFTELHFNKHYNIIGASMRTCHFAIGNAKTIRND 79 (178)
Q Consensus 1 ~~~~~~~~~~~~-~~~~~~~~~~~~~ileafgna~t~rN~NSSRFGKfi~l~f~~~g~i~Ga~I~~ylle~~~~~~~rN~ 79 (178)
|+|||.++++.. ...++++|+++||||||||||||+|||||||||||++|+|+.+|.|.||+|++||
T Consensus 107 l~yL~~~~~~~~~~~~i~~~i~~~npiLEAFGNAkT~~N~NSSRFgk~~~l~f~~~g~i~ga~i~~yL------------ 174 (674)
T cd01378 107 MQYIAAVSGGGQKVERVKDVILQSNPLLEAFGNAKTLRNNNSSRFGKYMEIQFDFKGDPVGGKITNYL------------ 174 (674)
T ss_pred HHHHHhcCCCCCccccHHHHHHHHHHHHHHhhccccCCCCCcchhheeEEEEECCCCCEeeEEEEEee------------
Confidence 689999887643 3569999999999999999999999999999999999999987766666666665
Q ss_pred CCCcceeeEEEEecccccccccchhhhccccceEEeecCCCCcceEeeeeccC--CCCCcccCCCCccchhhhh--hccC
Q psy15660 80 NSSRFGKFTELHFNKHYNIIGASMRTYLLEKSRVVFQAPNERNYHVFYQLCCA--RDKYPYLLLDEPDSFQYIR--ECCE 155 (178)
Q Consensus 80 nssrf~~~~~~~f~~~~~i~Ga~~~~~llEk~Rv~~~~~~Ernfhifyql~~~--~~e~~~l~l~d~~~f~~l~--~~~~ 155 (178)
|||+||+.++++|||||||||++++ .+++..++|.++++|.|+. ++..
T Consensus 175 ----------------------------LEksRVv~~~~gErnfHIFYqll~g~~~~~~~~l~L~~~~~y~yL~~~~~~~ 226 (674)
T cd01378 175 ----------------------------LEKSRVVSQNKGERNFHIFYQLLAGASEQLLRELGLQKPEYYYYLNQSQCYT 226 (674)
T ss_pred ----------------------------cCCCceeecCCCCchhHHHHHHHcCCCHHHHHHhCCCChhhCeeecCCCccC
Confidence 5789999999999999999999976 3456788999999999998 4668
Q ss_pred CCCCChHHHHHHHHHHHHhcCCC
Q psy15660 156 IPGVNDEEGFEETQQAFVTLGEN 178 (178)
Q Consensus 156 i~g~~d~e~~~~l~~Al~~LG~~ 178 (178)
+++++|.++|..++.||..|||+
T Consensus 227 ~~~~~d~~~f~~~~~al~~lG~s 249 (674)
T cd01378 227 VDGIDDKKDFKETQNAMKVIGFS 249 (674)
T ss_pred CCCccHHHHHHHHHHHHHHcCCC
Confidence 89999999999999999999996
No 11
>cd01382 MYSc_type_VI Myosin motor domain, type VI myosins. Myosin VI is a monomeric myosin, which moves towards the minus-end of actin filaments, in contrast to most other myosins. It has been implicated in endocytosis, secretion, and cell migration. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the minus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of
Probab=100.00 E-value=3.5e-39 Score=294.80 Aligned_cols=136 Identities=39% Similarity=0.739 Sum_probs=116.1
Q ss_pred CceEEeeeCCCCcchhhHHHHhhhhHHHHhccccccCCCCCCCcceeEEEeeccccccccceeeeeeeecccccccccCC
Q psy15660 1 MRYFATVGGSQTETQVEKKVLAYSPIMEAIGNAKTIRNDNRSRFGKFTELHFNKHYNIIGASMRTCHFAIGNAKTIRNDN 80 (178)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~ileafgna~t~rN~NSSRFGKfi~l~f~~~g~i~Ga~I~~ylle~~~~~~~rN~n 80 (178)
|+|||.+.|+. ..++++|+++||||||||||||+|||||||||||++|+|+.+|.|.||+|++||
T Consensus 112 l~yLa~~~~~~--~~i~~~il~snpiLEAFGNAkT~~N~NSSRFGK~~~l~f~~~g~i~Ga~i~~yL------------- 176 (717)
T cd01382 112 LRYLTESYGSG--QDIDDRIVEANPLLEAFGNAKTVRNNNSSRFGKFVEIHFNEKNSVVGGFVSHYL------------- 176 (717)
T ss_pred HHHHHhhccCC--ccHHHHHHHHHHHHHHhhccccCCCCCcccceeEEEEEECCCCCEeEEEEEEEe-------------
Confidence 67888876654 679999999999999999999999999999999999999987777777766665
Q ss_pred CCcceeeEEEEecccccccccchhhhccccceEEeecCCCCcceEeeeeccC--CCCCcccCCCCccchhhhhh------
Q psy15660 81 SSRFGKFTELHFNKHYNIIGASMRTYLLEKSRVVFQAPNERNYHVFYQLCCA--RDKYPYLLLDEPDSFQYIRE------ 152 (178)
Q Consensus 81 ssrf~~~~~~~f~~~~~i~Ga~~~~~llEk~Rv~~~~~~Ernfhifyql~~~--~~e~~~l~l~d~~~f~~l~~------ 152 (178)
|||+||+.++++|||||||||++++ .++++.++|.++++|+|+..
T Consensus 177 ---------------------------LEksRVv~~~~gErNfHIFYqLl~G~~~~~~~~l~L~~~~~y~yL~~~~~~~~ 229 (717)
T cd01382 177 ---------------------------LEKSRICVQSAEERNYHIFYRLCAGASEDIREKLHLSSPDDFRYLNRGCTRYF 229 (717)
T ss_pred ---------------------------ccCCceEecCCCCCchHHHHHHHhCCCHHHHHHhcCCChhhCeeecCCccccc
Confidence 5788999999999999999999976 34466788889999999872
Q ss_pred ----------------------ccCCCCCChHHHHHHHHHHHHhcCCC
Q psy15660 153 ----------------------CCEIPGVNDEEGFEETQQAFVTLGEN 178 (178)
Q Consensus 153 ----------------------~~~i~g~~d~e~~~~l~~Al~~LG~~ 178 (178)
++.+++++|.++|..++.||..|||+
T Consensus 230 ~~~~~~~~~~~~~~s~~~~~~~~~~~~~~dD~~~f~~~~~Al~~lg~s 277 (717)
T cd01382 230 ANKETDKQILQNRKSPEHLKKGALKDPLLDDYGDFQRMCVALKKIGLD 277 (717)
T ss_pred ccccccccccccccccccccccccCCCCCcHHHHHHHHHHHHHHcCCC
Confidence 12356788999999999999999986
No 12
>smart00242 MYSc Myosin. Large ATPases. ATPase; molecular motor. Muscle contraction consists of a cyclical interaction between myosin and actin. The core of the myosin structure is similar in fold to that of kinesin.
Probab=100.00 E-value=8.6e-39 Score=291.25 Aligned_cols=138 Identities=48% Similarity=0.797 Sum_probs=120.9
Q ss_pred CceEEeeeCCC-CcchhhHHHHhhhhHHHHhccccccCCCCCCCcceeEEEeeccccccccceeeeeeeecccccccccC
Q psy15660 1 MRYFATVGGSQ-TETQVEKKVLAYSPIMEAIGNAKTIRNDNRSRFGKFTELHFNKHYNIIGASMRTCHFAIGNAKTIRND 79 (178)
Q Consensus 1 ~~~~~~~~~~~-~~~~~~~~~~~~~~ileafgna~t~rN~NSSRFGKfi~l~f~~~g~i~Ga~I~~ylle~~~~~~~rN~ 79 (178)
|+||+.++++. ....++++|++++|||||||||||++||||||||||++|+|+.+|.|.||+|.+||
T Consensus 113 l~yl~~~~~~~~~~~~i~~~i~~~n~iLEAFGNAkT~~N~NSSRfgk~~~l~f~~~g~i~ga~i~~yL------------ 180 (677)
T smart00242 113 MQYLAAVSGSNTSVGSVEDQILESNPILEAFGNAKTVRNNNSSRFGKFIEIHFDAKGKIVGAKIETYL------------ 180 (677)
T ss_pred HHHHHhhcCCCCccccHHHHHHHHHHHHHHhhccccCCCCCccchheeEEEEECCCCcEeEEEEEEee------------
Confidence 57899888654 35679999999999999999999999999999999999999977666666666655
Q ss_pred CCCcceeeEEEEecccccccccchhhhccccceEEeecCCCCcceEeeeeccC--CCCCcccCCCCccchhhhh--hccC
Q psy15660 80 NSSRFGKFTELHFNKHYNIIGASMRTYLLEKSRVVFQAPNERNYHVFYQLCCA--RDKYPYLLLDEPDSFQYIR--ECCE 155 (178)
Q Consensus 80 nssrf~~~~~~~f~~~~~i~Ga~~~~~llEk~Rv~~~~~~Ernfhifyql~~~--~~e~~~l~l~d~~~f~~l~--~~~~ 155 (178)
|||+||+.++++|||||||||++++ .++++.++|.++.+|+|+. ++..
T Consensus 181 ----------------------------LEksRv~~~~~gErnfHIFYqLl~g~~~~~~~~l~L~~~~~y~yL~~~~~~~ 232 (677)
T smart00242 181 ----------------------------LEKSRVVSQAKGERNYHIFYQLLAGASEELKKELGLKSPEDYRYLNQGGCLS 232 (677)
T ss_pred ----------------------------cCCceEEecCCCCCchHHHHHHHcCCCHHHHHhcCCCChhhCceeCCCCCcc
Confidence 5789999999999999999999976 3456789999999999998 3678
Q ss_pred CCCCChHHHHHHHHHHHHhcCCC
Q psy15660 156 IPGVNDEEGFEETQQAFVTLGEN 178 (178)
Q Consensus 156 i~g~~d~e~~~~l~~Al~~LG~~ 178 (178)
+++.+|.++|.+++.||..|||+
T Consensus 233 ~~~~~d~~~f~~~~~al~~lG~~ 255 (677)
T smart00242 233 VDGIDDAEEFKETLNAMRVLGFS 255 (677)
T ss_pred CCCCCHHHHHHHHHHHHHHcCCC
Confidence 88999999999999999999996
No 13
>cd00124 MYSc Myosin motor domain. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an actin filament. ATP hydrolysis causes the head to pivot and associate with a new actin subunit. The release of Pi causes the head to pivot and move the fila
Probab=100.00 E-value=1e-38 Score=291.00 Aligned_cols=137 Identities=49% Similarity=0.843 Sum_probs=119.9
Q ss_pred CceEEeeeCCCCcchhhHHHHhhhhHHHHhccccccCCCCCCCcceeEEEeeccccccccceeeeeeeecccccccccCC
Q psy15660 1 MRYFATVGGSQTETQVEKKVLAYSPIMEAIGNAKTIRNDNRSRFGKFTELHFNKHYNIIGASMRTCHFAIGNAKTIRNDN 80 (178)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~ileafgna~t~rN~NSSRFGKfi~l~f~~~g~i~Ga~I~~ylle~~~~~~~rN~n 80 (178)
|+|||.++++. ...++++|++++|||||||||||+|||||||||||++|+|+.+|.|.||+|++||
T Consensus 107 l~yl~~~~~~~-~~~i~~~i~~~n~iLEaFGNAkT~~N~NSSRfGk~~~l~f~~~g~i~ga~i~~yL------------- 172 (679)
T cd00124 107 MKYLASLAGSN-DTGIEEKILAANPILEAFGNAKTVRNNNSSRFGKFIELQFDETGKISGAKITTYL------------- 172 (679)
T ss_pred HHHHHhccCCC-cchHHHHHHHHhHHHHHhcccccCCCCCcccceeEEEEEECCCCcEeEEEEEEEE-------------
Confidence 67899887654 4679999999999999999999999999999999999999987777776666665
Q ss_pred CCcceeeEEEEecccccccccchhhhccccceEEeecCCCCcceEeeeeccC--CCCCcccCCCCccchhhhh--hccCC
Q psy15660 81 SSRFGKFTELHFNKHYNIIGASMRTYLLEKSRVVFQAPNERNYHVFYQLCCA--RDKYPYLLLDEPDSFQYIR--ECCEI 156 (178)
Q Consensus 81 ssrf~~~~~~~f~~~~~i~Ga~~~~~llEk~Rv~~~~~~Ernfhifyql~~~--~~e~~~l~l~d~~~f~~l~--~~~~i 156 (178)
|||+||+.++++|||||||||++++ .+++..++|.++++|+|+. .+..+
T Consensus 173 ---------------------------LEksRv~~~~~gErnfHIFYqll~g~~~~~~~~l~L~~~~~y~yL~~~~~~~~ 225 (679)
T cd00124 173 ---------------------------LEKSRVVSQEPGERNFHIFYQLLAGASPEERKKLGLKRPESYRYLNQGGCNDV 225 (679)
T ss_pred ---------------------------cccceeeccCCCCCchhHHHHHHcCCCHHHHHhcCCCCcccCeeeCCCCcccC
Confidence 5789999999999999999999976 4557789999999999998 34555
Q ss_pred CCCChHHHHHHHHHHHHhcCCC
Q psy15660 157 PGVNDEEGFEETQQAFVTLGEN 178 (178)
Q Consensus 157 ~g~~d~e~~~~l~~Al~~LG~~ 178 (178)
++.+|.++|..++.||..|||+
T Consensus 226 ~~~~d~~~f~~~~~al~~lg~~ 247 (679)
T cd00124 226 DGIDDAEEFEELKEALKSLGFS 247 (679)
T ss_pred CCCCHHHHHHHHHHHHHHcCCC
Confidence 8899999999999999999995
No 14
>cd01379 MYSc_type_III Myosin motor domain, type III myosins. Myosin III has been shown to play a role in the vision process in insects and in hearing in mammals. Myosin III, an unconventional myosin, does not form dimers. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the
Probab=100.00 E-value=1.9e-38 Score=287.29 Aligned_cols=137 Identities=32% Similarity=0.571 Sum_probs=112.6
Q ss_pred CceEEeeeCCCCcchhhHHHHhhhhHHHHhccccccCCCCCCCcceeEEEeeccccccccceeeeeeeecccccccccCC
Q psy15660 1 MRYFATVGGSQTETQVEKKVLAYSPIMEAIGNAKTIRNDNRSRFGKFTELHFNKHYNIIGASMRTCHFAIGNAKTIRNDN 80 (178)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~ileafgna~t~rN~NSSRFGKfi~l~f~~~g~i~Ga~I~~ylle~~~~~~~rN~n 80 (178)
|+|||.++++. ...+++||+++||||||||||||+|||||||||||++|+|+.+|.|.||+|++||
T Consensus 107 ~~yL~~~~~~~-~~~i~~~il~snpiLEAFGNAkT~~N~NSSRFGK~i~l~f~~~g~i~Ga~i~~yL------------- 172 (653)
T cd01379 107 VQQLTVLGKAN-NRTLQEKILQVNSLVEAFGNARTGINDNSSRFGKYLEMKFTRSGAVVGARISEYL------------- 172 (653)
T ss_pred HHHHHHhcCCC-CccHHHHHHHHHHHHHHhhccCcCCCCCcccceeEEEEEECCCCcEEEEEEEEEe-------------
Confidence 57888776443 3679999999999999999999999999999999999999987777777666665
Q ss_pred CCcceeeEEEEecccccccccchhhhccccceEEeecCCCCcceEeeeeccCCC--C-CcccCCCCccchhhhhh--ccC
Q psy15660 81 SSRFGKFTELHFNKHYNIIGASMRTYLLEKSRVVFQAPNERNYHVFYQLCCARD--K-YPYLLLDEPDSFQYIRE--CCE 155 (178)
Q Consensus 81 ssrf~~~~~~~f~~~~~i~Ga~~~~~llEk~Rv~~~~~~Ernfhifyql~~~~~--e-~~~l~l~d~~~f~~l~~--~~~ 155 (178)
|||+||+.++++|||||||||+++|.. + ...++|.+.++|+|+.. +..
T Consensus 173 ---------------------------LEksRVv~q~~gERNfHIFYqLl~G~~~~~~~~~~~L~~~~~~~yL~~~~~~~ 225 (653)
T cd01379 173 ---------------------------LEKSRVVHQAEGEKNFHIFYYIYAGLAEEKKLAEYKLPESKTPRYLQNEATRV 225 (653)
T ss_pred ---------------------------ccCCceeccCCCCCceeeHHHHHhCCCHHHHHHhcCCCCccccCccCCCCccc
Confidence 578999999999999999999998743 2 25678888889999872 233
Q ss_pred CCCCC----hHHHHHHHHHHHHhcCCC
Q psy15660 156 IPGVN----DEEGFEETQQAFVTLGEN 178 (178)
Q Consensus 156 i~g~~----d~e~~~~l~~Al~~LG~~ 178 (178)
+++++ |.++|..++.||..|||+
T Consensus 226 ~~~~~~~~~~~~~f~~~~~al~~lg~~ 252 (653)
T cd01379 226 VQDITSNKFYKDQFEQIEQCFRVIGFT 252 (653)
T ss_pred cCCCccchhHHHHHHHHHHHHHHcCCC
Confidence 45554 467899999999999986
No 15
>cd01387 MYSc_type_XV Myosin motor domain, type XV myosins. In vertebrates, myosin XV appears to be expressed in sensory tissue and play a role in hearing. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an actin filament. ATP hydrolysis caus
Probab=100.00 E-value=1.2e-38 Score=289.71 Aligned_cols=136 Identities=41% Similarity=0.707 Sum_probs=116.5
Q ss_pred CceEEeeeCCCCcchhhHHHHhhhhHHHHhccccccCCCCCCCcceeEEEeeccccccccceeeeeeeecccccccccCC
Q psy15660 1 MRYFATVGGSQTETQVEKKVLAYSPIMEAIGNAKTIRNDNRSRFGKFTELHFNKHYNIIGASMRTCHFAIGNAKTIRNDN 80 (178)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~ileafgna~t~rN~NSSRFGKfi~l~f~~~g~i~Ga~I~~ylle~~~~~~~rN~n 80 (178)
|+|||.++++. ...++++|+++||||||||||||+|||||||||||++|+|+ +|.|.||+|++||
T Consensus 108 l~yl~~~~~~~-~~~i~~~il~snpiLEAFGNAkT~~N~NSSRfGk~~~l~f~-~g~i~Ga~i~~yL------------- 172 (677)
T cd01387 108 LRYLAAMNQGG-SAVITEQILEATPLLEAFGNAKTVRNDNSSRFGKFVEIFLE-GGVIVGAITSQYL------------- 172 (677)
T ss_pred HHHHHhhcCCC-cchHHHHHHHHHHHHHHHhCcCCCCCCCccccceEEEEEec-CCcEeEEEEEEEe-------------
Confidence 67888886543 35699999999999999999999999999999999999995 5666666666555
Q ss_pred CCcceeeEEEEecccccccccchhhhccccceEEeecCCCCcceEeeeeccC--CCCCcccCCCCccchhhhh--hccCC
Q psy15660 81 SSRFGKFTELHFNKHYNIIGASMRTYLLEKSRVVFQAPNERNYHVFYQLCCA--RDKYPYLLLDEPDSFQYIR--ECCEI 156 (178)
Q Consensus 81 ssrf~~~~~~~f~~~~~i~Ga~~~~~llEk~Rv~~~~~~Ernfhifyql~~~--~~e~~~l~l~d~~~f~~l~--~~~~i 156 (178)
|||+||+.++++|||||||||++++ .+++..++|.++++|.|+. ++..+
T Consensus 173 ---------------------------LEksRvv~q~~gErnfHIFYqll~g~~~~~~~~~~L~~~~~y~yL~~~~~~~~ 225 (677)
T cd01387 173 ---------------------------LEKSRIVFQAKNERNYHIFYELLAGLPAQLRQAFSLQEAETYYYLNQGGNCEI 225 (677)
T ss_pred ---------------------------cCCCceeecCCCCchHHHHHHHHhCCCHHHHHHhcCCCHHhCchhcCCCcccC
Confidence 6889999999999999999999976 3456678899999999997 35567
Q ss_pred CCCChHHHHHHHHHHHHhcCCC
Q psy15660 157 PGVNDEEGFEETQQAFVTLGEN 178 (178)
Q Consensus 157 ~g~~d~e~~~~l~~Al~~LG~~ 178 (178)
++.+|.++|..++.||..|||+
T Consensus 226 ~~~~d~~~f~~~~~al~~lg~~ 247 (677)
T cd01387 226 AGKSDADDFRRLLAAMEVLGFS 247 (677)
T ss_pred CCcCHHHHHHHHHHHHHHcCCC
Confidence 7889999999999999999996
No 16
>KOG0164|consensus
Probab=100.00 E-value=5.8e-39 Score=283.79 Aligned_cols=138 Identities=38% Similarity=0.641 Sum_probs=120.5
Q ss_pred CceEEeeeCCCCc---chhhHHHHhhhhHHHHhccccccCCCCCCCcceeEEEeeccccccccceeeeeeeecccccccc
Q psy15660 1 MRYFATVGGSQTE---TQVEKKVLAYSPIMEAIGNAKTIRNDNRSRFGKFTELHFNKHYNIIGASMRTCHFAIGNAKTIR 77 (178)
Q Consensus 1 ~~~~~~~~~~~~~---~~~~~~~~~~~~ileafgna~t~rN~NSSRFGKfi~l~f~~~g~i~Ga~I~~ylle~~~~~~~r 77 (178)
|+|+|.+.+.... ..+...++++||||||||||||.||||||||||||.|+||-+|.++||.|.+||
T Consensus 115 MqYiAAvtn~~qq~eierVKn~LLqSN~VLEAFGNAKT~RNdNSSRFGKYMDInFDfKGdPvGG~I~nYL---------- 184 (1001)
T KOG0164|consen 115 MQYIAAVTNASQQGEIERVKNVLLQSNCVLEAFGNAKTNRNDNSSRFGKYMDINFDFKGDPVGGHITNYL---------- 184 (1001)
T ss_pred HHHHHHhcCccccchHHHHHHHHHhcchHHHHhcccccccCCchhhhhcceeeeccccCCcccchHhHHH----------
Confidence 7888887654333 456789999999999999999999999999999999999999988888888776
Q ss_pred cCCCCcceeeEEEEecccccccccchhhhccccceEEeecCCCCcceEeeeeccCCC--CCcccCC-CCccchhhhh-hc
Q psy15660 78 NDNSSRFGKFTELHFNKHYNIIGASMRTYLLEKSRVVFQAPNERNYHVFYQLCCARD--KYPYLLL-DEPDSFQYIR-EC 153 (178)
Q Consensus 78 N~nssrf~~~~~~~f~~~~~i~Ga~~~~~llEk~Rv~~~~~~Ernfhifyql~~~~~--e~~~l~l-~d~~~f~~l~-~~ 153 (178)
||||||+.|.+||||||+|||++.|.+ .++.++| .|+..|.|++ ++
T Consensus 185 ------------------------------LEKSRVv~Q~~GERNFH~FYQLL~G~~e~~Lr~l~Ler~~~~Y~ylnqg~ 234 (1001)
T KOG0164|consen 185 ------------------------------LEKSRVVKQQPGERNFHIFYQLLRGGEEQLLRQLGLERNPQSYNYLNQGS 234 (1001)
T ss_pred ------------------------------HhhhhhhhcCcCcchHHHHHHHHcCCcHHHHHHhccccCcchhhhhhhhh
Confidence 478889999999999999999997643 3567888 4889999998 78
Q ss_pred cCCCCCChHHHHHHHHHHHHhcCCC
Q psy15660 154 CEIPGVNDEEGFEETQQAFVTLGEN 178 (178)
Q Consensus 154 ~~i~g~~d~e~~~~l~~Al~~LG~~ 178 (178)
..+++++|+.+|..++.||.++||+
T Consensus 235 ~~v~sinD~~dfk~V~~Am~vIgFs 259 (1001)
T KOG0164|consen 235 AKVSSINDASDFKAVQKAMRVIGFS 259 (1001)
T ss_pred hhhcccccHHHHHHHHHHHHHcCCC
Confidence 8899999999999999999999996
No 17
>KOG0162|consensus
Probab=100.00 E-value=5.1e-37 Score=271.92 Aligned_cols=138 Identities=38% Similarity=0.698 Sum_probs=119.5
Q ss_pred CceEEeeeC-CCCcchhhHHHHhhhhHHHHhccccccCCCCCCCcceeEEEeeccccccccceeeeeeeecccccccccC
Q psy15660 1 MRYFATVGG-SQTETQVEKKVLAYSPIMEAIGNAKTIRNDNRSRFGKFTELHFNKHYNIIGASMRTCHFAIGNAKTIRND 79 (178)
Q Consensus 1 ~~~~~~~~~-~~~~~~~~~~~~~~~~ileafgna~t~rN~NSSRFGKfi~l~f~~~g~i~Ga~I~~ylle~~~~~~~rN~ 79 (178)
|+|++.++| +..-..+.+-|+++||+|||||||||+|||||||||||.||+|+..|..+||+|++||
T Consensus 125 M~YIs~vS~~g~kvq~vkdiiL~sNPLLEaFG~akTvRNnNSSR~GKY~Ei~Fs~ggeP~ggkisNfL------------ 192 (1106)
T KOG0162|consen 125 MQYISRVSGGGEKVQHVKDIILQSNPLLEAFGNAKTVRNNNSSRFGKYLEIQFSRGGEPDGGKISNFL------------ 192 (1106)
T ss_pred HHHHHHhccCCcchhhhhhHhhccchHHHHhcchhhhccCCcccccceEEEEecCCCCcCcchhhHHH------------
Confidence 678887764 3334668899999999999999999999999999999999999988777777777665
Q ss_pred CCCcceeeEEEEecccccccccchhhhccccceEEeecCCCCcceEeeeeccC--CCCCcccCCCCccchhhhh--hccC
Q psy15660 80 NSSRFGKFTELHFNKHYNIIGASMRTYLLEKSRVVFQAPNERNYHVFYQLCCA--RDKYPYLLLDEPDSFQYIR--ECCE 155 (178)
Q Consensus 80 nssrf~~~~~~~f~~~~~i~Ga~~~~~llEk~Rv~~~~~~Ernfhifyql~~~--~~e~~~l~l~d~~~f~~l~--~~~~ 155 (178)
|||+||+.|.++|||||||||++.+ .+.+..+++..++.|.|+. +|..
T Consensus 193 ----------------------------LEKsRVV~q~~neRnFHIfYQ~~kgAs~~~r~t~Gi~~pe~Y~Y~~~sg~~s 244 (1106)
T KOG0162|consen 193 ----------------------------LEKSRVVMQNENERNFHIFYQLTKGASQEYRQTFGIQEPEYYVYLNASGCYS 244 (1106)
T ss_pred ----------------------------HhhhhhhhccCCccceeeehhhhcCccHHHHhhhCcCCchheeeecccccee
Confidence 5788888888999999999999855 4446789999999999997 7899
Q ss_pred CCCCChHHHHHHHHHHHHhcCCC
Q psy15660 156 IPGVNDEEGFEETQQAFVTLGEN 178 (178)
Q Consensus 156 i~g~~d~e~~~~l~~Al~~LG~~ 178 (178)
+++++|.++|+.++.||.++|+.
T Consensus 245 ~D~idd~kdfq~Tl~AM~vIGi~ 267 (1106)
T KOG0162|consen 245 VDDIDDRKDFQETLHAMKVIGIN 267 (1106)
T ss_pred ccccchHHHHHHHHHHheeccCC
Confidence 99999999999999999999974
No 18
>PF00063 Myosin_head: Myosin head (motor domain); InterPro: IPR001609 Muscle contraction is caused by sliding between the thick and thin filaments of the myofibril. Myosin is a major component of thick filaments and exists as a hexamer of 2 heavy chains [], 2 alkali light chains, and 2 regulatory light chains. The heavy chain can be subdivided into the N-terminal globular head and the C-terminal coiled-coil rod-like tail, although some forms have a globular region in their C-terminal. There are many cell-specific isoforms of myosin heavy chains, coded for by a multi-gene family []. Myosin interacts with actin to convert chemical energy, in the form of ATP, to mechanical energy []. The 3-D structure of the head portion of myosin has been determined [] and a model for actin-myosin complex has been constructed []. The globular head is well conserved, some highly-conserved regions possibly relating to functional and structural domains []. The rod-like tail starts with an invariant proline residue, and contains many repeats of a 28 residue region, interrupted at 4 regularly-spaced points known as skip residues. Although the sequence of the tail is not well conserved, the chemical character is, hydrophobic, charged and skip residues occuring in a highly ordered and repeated fashion [].; GO: 0003774 motor activity, 0005524 ATP binding, 0016459 myosin complex; PDB: 1LKX_A 2V26_A 2BKI_A 3L9I_A 2BKH_A 2X51_A 2VB6_A 2VAS_A 1OE9_A 1W8J_A ....
Probab=100.00 E-value=9.8e-37 Score=278.85 Aligned_cols=138 Identities=49% Similarity=0.838 Sum_probs=112.2
Q ss_pred CceEEeeeCCCC---cchhhHHHHhhhhHHHHhccccccCCCCCCCcceeEEEeeccccccccceeeeeeeecccccccc
Q psy15660 1 MRYFATVGGSQT---ETQVEKKVLAYSPIMEAIGNAKTIRNDNRSRFGKFTELHFNKHYNIIGASMRTCHFAIGNAKTIR 77 (178)
Q Consensus 1 ~~~~~~~~~~~~---~~~~~~~~~~~~~ileafgna~t~rN~NSSRFGKfi~l~f~~~g~i~Ga~I~~ylle~~~~~~~r 77 (178)
|+||+.++.+.. ...++++|++++|||||||||||++|+||||||||++|+|+.+|.++||+|++||
T Consensus 106 l~~L~~~~~~~~~~~~~~i~~~i~~~~~iLeaFGnAkT~~N~nSSRfgk~~~l~f~~~~~~~g~~i~~yl---------- 175 (689)
T PF00063_consen 106 LRYLASLSSSSSSSKSSSIEKKILAANPILEAFGNAKTPRNDNSSRFGKFIELQFDDSGQIVGAKIETYL---------- 175 (689)
T ss_dssp HHHHHHHSSSSSSTCTTHHHHHHHHHHHHHHHHHEEEESSETTEESSEEEEEEEEETTSSEEEEEEEEEE----------
T ss_pred HHHHhhhcccccccccccccceEEeccchhhhhcccccccCCcccccceEEEEEecccccccccceeccc----------
Confidence 578888876543 4689999999999999999999999999999999999999977766666666665
Q ss_pred cCCCCcceeeEEEEecccccccccchhhhccccceEEeecCCCCcceEeeeeccCC--CCCcccCCCCccchhhhhh--c
Q psy15660 78 NDNSSRFGKFTELHFNKHYNIIGASMRTYLLEKSRVVFQAPNERNYHVFYQLCCAR--DKYPYLLLDEPDSFQYIRE--C 153 (178)
Q Consensus 78 N~nssrf~~~~~~~f~~~~~i~Ga~~~~~llEk~Rv~~~~~~Ernfhifyql~~~~--~e~~~l~l~d~~~f~~l~~--~ 153 (178)
|||+||+.++++||||||||||++|. +++..++|.++++|.|+.. +
T Consensus 176 ------------------------------LEksRv~~~~~~ErnfhiFYqll~G~~~~~~~~l~L~~~~~~~yL~~~~~ 225 (689)
T PF00063_consen 176 ------------------------------LEKSRVVRQPPGERNFHIFYQLLAGADDEERKELRLNDASDYRYLNQSGC 225 (689)
T ss_dssp ------------------------------E-GGGGT---TTS-SBHHHHHHHHTSSHHHHHHTT-S-GGGSTTCCTTSS
T ss_pred ------------------------------ccccceeeccccccccchhhhhhhccchhhhhcccccccccccceecccc
Confidence 57888888999999999999999773 4567899999999999984 6
Q ss_pred cCCCCCChHHHHHHHHHHHHhcCCC
Q psy15660 154 CEIPGVNDEEGFEETQQAFVTLGEN 178 (178)
Q Consensus 154 ~~i~g~~d~e~~~~l~~Al~~LG~~ 178 (178)
..+++.+|.+.|..++.||+.|||+
T Consensus 226 ~~~~~~~d~~~f~~l~~al~~lg~~ 250 (689)
T PF00063_consen 226 STIPGIDDAEEFQELKDALKTLGFS 250 (689)
T ss_dssp SSBTTCTHHHHHHHHHHHHHHTT--
T ss_pred cccCCccCHHHhhhhhhhhccccCc
Confidence 7788999999999999999999985
No 19
>KOG0163|consensus
Probab=100.00 E-value=7.3e-36 Score=265.29 Aligned_cols=109 Identities=45% Similarity=0.793 Sum_probs=85.2
Q ss_pred CceEEeeeCCCCcchhhHHHHhhhhHHHHhccccccCCCCCCCcceeEEEeeccccccccceeeeeeeecccccccccCC
Q psy15660 1 MRYFATVGGSQTETQVEKKVLAYSPIMEAIGNAKTIRNDNRSRFGKFTELHFNKHYNIIGASMRTCHFAIGNAKTIRNDN 80 (178)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~ileafgna~t~rN~NSSRFGKfi~l~f~~~g~i~Ga~I~~ylle~~~~~~~rN~n 80 (178)
++|||.--|+ .++++++++++||||||||||||+|||||||||||++|||+.+|.|+||-|++||
T Consensus 165 LrYLces~gs--ag~Iq~rileaNPiLEAFGNAKT~RNNNSSRFGKFveiHf~dk~~VvGGyvSHYL------------- 229 (1259)
T KOG0163|consen 165 LRYLCESWGS--AGPIQTRILEANPILEAFGNAKTLRNNNSSRFGKFVEIHFDDKGQVVGGYVSHYL------------- 229 (1259)
T ss_pred HHHHHhccCC--CCcHHHHHhccChHHHHhccchhhccCChhhccceEEEEEcCCCceechhhhHHH-------------
Confidence 4677766555 4789999999999999999999999999999999999999987766666666555
Q ss_pred CCcceeeEEEEecccccccccchhhhccccceEEeecCCCCcceEeeeeccC-CC-CCcccCCCCccchhhhh
Q psy15660 81 SSRFGKFTELHFNKHYNIIGASMRTYLLEKSRVVFQAPNERNYHVFYQLCCA-RD-KYPYLLLDEPDSFQYIR 151 (178)
Q Consensus 81 ssrf~~~~~~~f~~~~~i~Ga~~~~~llEk~Rv~~~~~~Ernfhifyql~~~-~~-e~~~l~l~d~~~f~~l~ 151 (178)
|||+|+..|..+|||||||||+++| .+ -++.+.|..+++|+|++
T Consensus 230 ---------------------------LEkSRiC~Qaa~ERNYHiFY~LiAGas~dl~~kL~L~~pd~f~YL~ 275 (1259)
T KOG0163|consen 230 ---------------------------LEKSRICRQAAEERNYHIFYQLIAGASPDLRKKLSLGKPDDFRYLK 275 (1259)
T ss_pred ---------------------------HHHhHHHHhhhcccchhHHHHHHcCCCHHHHHHhccCCchhhhHHh
Confidence 5666777777777777777777765 22 24566777777777765
No 20
>KOG0160|consensus
Probab=100.00 E-value=1.8e-35 Score=269.93 Aligned_cols=138 Identities=50% Similarity=0.792 Sum_probs=123.3
Q ss_pred CceEEeeeCCCCcchhhHHHHhhhhHHHHhccccccCCCCCCCcceeEEEeeccccccccceeeeeeeecccccccccCC
Q psy15660 1 MRYFATVGGSQTETQVEKKVLAYSPIMEAIGNAKTIRNDNRSRFGKFTELHFNKHYNIIGASMRTCHFAIGNAKTIRNDN 80 (178)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~ileafgna~t~rN~NSSRFGKfi~l~f~~~g~i~Ga~I~~ylle~~~~~~~rN~n 80 (178)
|+|||.++++.....+|++++++|||+||||||||+|||||||||||++|+|+..|.|.||+|+||
T Consensus 115 m~yla~v~~~~~~~~vE~~vL~snpi~EafgNakT~rndnsSrFgK~iei~Fd~~~~I~GA~~~TY-------------- 180 (862)
T KOG0160|consen 115 MEYLASVGGSVEGRSIENKVLASNPILEAFGNAKTTRNDNSSRFGKVIEITFDQQGRISGAKIRTY-------------- 180 (862)
T ss_pred HHHHHHHhccchhhHHHHHHHhcCCcchhhccchhhhcccHHHhhhHHHHhhhhhcccccceeeeE--------------
Confidence 789999999866689999999999999999999999999999999999999997655555555555
Q ss_pred CCcceeeEEEEecccccccccchhhhccccceEEeecCCCCcceEeeeeccC-CCCCcccCCCCccchhhhh--hccCCC
Q psy15660 81 SSRFGKFTELHFNKHYNIIGASMRTYLLEKSRVVFQAPNERNYHVFYQLCCA-RDKYPYLLLDEPDSFQYIR--ECCEIP 157 (178)
Q Consensus 81 ssrf~~~~~~~f~~~~~i~Ga~~~~~llEk~Rv~~~~~~Ernfhifyql~~~-~~e~~~l~l~d~~~f~~l~--~~~~i~ 157 (178)
||||+||+.++++|||||+|||++++ .+++..+.+.++..|.|+. ++..+.
T Consensus 181 --------------------------LLekSRv~~~~~~ernyhiFyQlca~~~~~~~~l~L~~~~~f~yl~q~~~~~i~ 234 (862)
T KOG0160|consen 181 --------------------------LLEKSRVVQLSAPERNYHIFYQLCAGAPEELEKLKLGTLRRFSYLNQSACVLIS 234 (862)
T ss_pred --------------------------EeecceeeecCccccchHHHHHHhcCCchhhhccCcCccccceecccccchhhc
Confidence 56899999999999999999999976 3567789999999999998 678899
Q ss_pred CCChHHHHHHHHHHHHhcCCC
Q psy15660 158 GVNDEEGFEETQQAFVTLGEN 178 (178)
Q Consensus 158 g~~d~e~~~~l~~Al~~LG~~ 178 (178)
+++|.++|..++.||+++|++
T Consensus 235 ~v~d~~e~~~t~~A~~~vgi~ 255 (862)
T KOG0160|consen 235 GVSDAEEFLSTTEAMLFVGIS 255 (862)
T ss_pred ccccHHHHHHHHHHHHHhcCC
Confidence 999999999999999999985
No 21
>KOG0161|consensus
Probab=100.00 E-value=1.6e-34 Score=279.66 Aligned_cols=138 Identities=47% Similarity=0.799 Sum_probs=118.5
Q ss_pred CceEEeeeCCC---Cc--chhhHHHHhhhhHHHHhccccccCCCCCCCcceeEEEeeccccccccceeeeeeeecccccc
Q psy15660 1 MRYFATVGGSQ---TE--TQVEKKVLAYSPIMEAIGNAKTIRNDNRSRFGKFTELHFNKHYNIIGASMRTCHFAIGNAKT 75 (178)
Q Consensus 1 ~~~~~~~~~~~---~~--~~~~~~~~~~~~ileafgna~t~rN~NSSRFGKfi~l~f~~~g~i~Ga~I~~ylle~~~~~~ 75 (178)
|+|||+++++. .. ..++++|+++||||||||||+|+||||||||||||+|+|+.+
T Consensus 189 Iqyla~va~~~~~~~~~~~~le~qi~q~npvLeaFGNa~tvrn~NssRFgkfirI~F~~~-------------------- 248 (1930)
T KOG0161|consen 189 IQYLASVASSSTKKVKIEGTLEDQILQANPVLEAFGNAKTVRNDNSSRFGKFIRIHFDAT-------------------- 248 (1930)
T ss_pred HHHHHHHhhccccCCCCCCChHHHHHHhCchHHHhcChhhhcCCCCcccceeEEEecCCC--------------------
Confidence 68999998753 11 579999999999999999999999999999999999999854
Q ss_pred cccCCCCcceeeEEEEecccccccccchhhhccccceEEeecCCCCcceEeeeeccC--CCCCcccCCCC-ccchhhhh-
Q psy15660 76 IRNDNSSRFGKFTELHFNKHYNIIGASMRTYLLEKSRVVFQAPNERNYHVFYQLCCA--RDKYPYLLLDE-PDSFQYIR- 151 (178)
Q Consensus 76 ~rN~nssrf~~~~~~~f~~~~~i~Ga~~~~~llEk~Rv~~~~~~Ernfhifyql~~~--~~e~~~l~l~d-~~~f~~l~- 151 (178)
|.|.||.+.+|||||+||+.|+++||+||||||++.+ .+.+..+.|++ +.+|.++.
T Consensus 249 --------------------G~i~~a~Ie~yLLEKsRv~~Q~~~Er~yhiFyqlls~~~~~l~~~l~L~~~~~~Y~f~~~ 308 (1930)
T KOG0161|consen 249 --------------------GKIAGADIETYLLEKSRVIRQAPGERNYHIFYQLLSGADPELKEELLLSDNVKDYKFLSN 308 (1930)
T ss_pred --------------------CccchhhHHHHHHHHhHhhccCcchhHHHHHHHHHhCCCHHHHHHHhhcccchhhhhhcc
Confidence 6677777777788999999999999999999999865 23344566665 78899987
Q ss_pred hccCCCCCChHHHHHHHHHHHHhcCCC
Q psy15660 152 ECCEIPGVNDEEGFEETQQAFVTLGEN 178 (178)
Q Consensus 152 ~~~~i~g~~d~e~~~~l~~Al~~LG~~ 178 (178)
.-..++|++|.+.|..+..||.+|||+
T Consensus 309 ~~~~i~g~dd~eef~~t~~a~~ilgfs 335 (1930)
T KOG0161|consen 309 GESTIPGVDDAEEFQETDEAMDILGFS 335 (1930)
T ss_pred ccCCCCCcchHHHHHHHHHHHHHhCCC
Confidence 334899999999999999999999996
No 22
>KOG4229|consensus
Probab=99.90 E-value=1.3e-25 Score=209.69 Aligned_cols=136 Identities=38% Similarity=0.648 Sum_probs=112.8
Q ss_pred ceEEeeeCCCCcchhhHHHHhhhhHHHHhccccccCCCCCCCcceeEEEeeccccccccceeeeeeeecccccccccCCC
Q psy15660 2 RYFATVGGSQTETQVEKKVLAYSPIMEAIGNAKTIRNDNRSRFGKFTELHFNKHYNIIGASMRTCHFAIGNAKTIRNDNS 81 (178)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~ileafgna~t~rN~NSSRFGKfi~l~f~~~g~i~Ga~I~~ylle~~~~~~~rN~ns 81 (178)
++|+.++. .+...++++|+.++|+||+||||+|.+|||||||||||+++|...|.|.||+|
T Consensus 170 ~~Ls~Lsq-~~~~~~e~~il~a~~llEafgnA~t~~ndnssrfgk~i~~~~~~~g~i~Gaki------------------ 230 (1062)
T KOG4229|consen 170 QFLSILSQ-GNNSPVEQLILSANPLLEAFGNAKTPRNDNSSRFGKYIKVNFRKTGIIEGAKI------------------ 230 (1062)
T ss_pred HHHHHHhc-CCCCchhhhhhcchHHHHHhcccCCcccCchhhhhheEEeccccCCCCCcchH------------------
Confidence 56666663 23477899999999999999999999999999999999999986655555544
Q ss_pred CcceeeEEEEecccccccccchhhhccccceEEeecCCCCcceEeeeeccCC--CCCcccCCCCccchhhhh--hccCC-
Q psy15660 82 SRFGKFTELHFNKHYNIIGASMRTYLLEKSRVVFQAPNERNYHVFYQLCCAR--DKYPYLLLDEPDSFQYIR--ECCEI- 156 (178)
Q Consensus 82 srf~~~~~~~f~~~~~i~Ga~~~~~llEk~Rv~~~~~~Ernfhifyql~~~~--~e~~~l~l~d~~~f~~l~--~~~~i- 156 (178)
..|++||+|++.+..+|+|||+||+++++. .++..+.+..+++|.|+. .+..+
T Consensus 231 ----------------------~~yllEKsr~~~q~~~e~nyhify~~~agl~~~e~~~~~l~~~e~y~yL~~~~~~~~~ 288 (1062)
T KOG4229|consen 231 ----------------------VEYLLEKSRLVIQAGGERNYHIFYYLLAGLSENELKAFVLGEAENYEYLEQGALFTIS 288 (1062)
T ss_pred ----------------------HHHHHHHHHHHHhcCCCcccccchhheeccchhhhhHHhhcCCCCHHHhhcccccccc
Confidence 455567888888999999999999998763 445567788999999998 45566
Q ss_pred CCCChHHHHHHHHHHHHhcCCC
Q psy15660 157 PGVNDEEGFEETQQAFVTLGEN 178 (178)
Q Consensus 157 ~g~~d~e~~~~l~~Al~~LG~~ 178 (178)
++..+.++|..+.+||.++||+
T Consensus 289 d~~~~~~~~~~l~~~m~v~~f~ 310 (1062)
T KOG4229|consen 289 DGEDDVAQFIRLEAAMSVVGFT 310 (1062)
T ss_pred chHHHHHhHHHHHHHHHHhccc
Confidence 8888999999999999999984
No 23
>PTZ00014 myosin-A; Provisional
Probab=98.29 E-value=2.4e-07 Score=86.86 Aligned_cols=39 Identities=49% Similarity=0.655 Sum_probs=36.3
Q ss_pred eeeeecccccccccCCCCcceeeEEEEecccccccccch
Q psy15660 65 TCHFAIGNAKTIRNDNSSRFGKFTELHFNKHYNIIGASM 103 (178)
Q Consensus 65 ~ylle~~~~~~~rN~nssrf~~~~~~~f~~~~~i~Ga~~ 103 (178)
+.|.++|+|+|.||+||||||||++++|+..+.|.||.+
T Consensus 228 piLEAFGNAKT~rNdNSSRFGKfi~i~F~~~g~i~Ga~I 266 (821)
T PTZ00014 228 PVLEAFGNAKTIRNNNSSRFGRFMQLQLGEEGGIRYGSI 266 (821)
T ss_pred HHHHHhhccCcCCCCCcCcceeEEEEEEcCCCcEeeEEE
Confidence 356679999999999999999999999999999999986
No 24
>COG5022 Myosin heavy chain [Cytoskeleton]
Probab=98.21 E-value=4.7e-07 Score=87.27 Aligned_cols=38 Identities=53% Similarity=0.794 Sum_probs=35.6
Q ss_pred eeeeecccccccccCCCCcceeeEEEEecccccccccc
Q psy15660 65 TCHFAIGNAKTIRNDNSSRFGKFTELHFNKHYNIIGAS 102 (178)
Q Consensus 65 ~ylle~~~~~~~rN~nssrf~~~~~~~f~~~~~i~Ga~ 102 (178)
+.|.+||+|+|.||+||||||||+++.|+..+.|+||.
T Consensus 199 PILEAFGNAkTvRNdNSSRFGKyikI~Fd~~g~I~GA~ 236 (1463)
T COG5022 199 PILEAFGNAKTVRNDNSSRFGKYIKIEFDENGEICGAK 236 (1463)
T ss_pred hHHHHhccccccccCCcccccceEEEEECCCCceechh
Confidence 36778999999999999999999999999999999998
No 25
>cd01377 MYSc_type_II Myosin motor domain, type II myosins. Myosin II mediates cortical contraction in cell motility, and is the motor in smooth and skeletal muscle. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an actin filament. ATP hydro
Probab=98.20 E-value=4.8e-07 Score=83.64 Aligned_cols=38 Identities=58% Similarity=0.846 Sum_probs=35.8
Q ss_pred eeeecccccccccCCCCcceeeEEEEecccccccccch
Q psy15660 66 CHFAIGNAKTIRNDNSSRFGKFTELHFNKHYNIIGASM 103 (178)
Q Consensus 66 ylle~~~~~~~rN~nssrf~~~~~~~f~~~~~i~Ga~~ 103 (178)
.|.++|+|+|.||+||||||||++++|+..+.|.||.+
T Consensus 145 iLEAFGNAkT~rN~NSSRFGK~i~l~f~~~g~i~Ga~i 182 (693)
T cd01377 145 ILEAFGNAKTVRNDNSSRFGKFIRIHFGNTGKIAGADI 182 (693)
T ss_pred HHHHhhccccCCCCCccccceeEEEEECCCCCEEEEEE
Confidence 56679999999999999999999999999999999997
No 26
>cd01379 MYSc_type_III Myosin motor domain, type III myosins. Myosin III has been shown to play a role in the vision process in insects and in hearing in mammals. Myosin III, an unconventional myosin, does not form dimers. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the
Probab=98.19 E-value=5.4e-07 Score=82.75 Aligned_cols=39 Identities=46% Similarity=0.691 Sum_probs=36.4
Q ss_pred eeeeecccccccccCCCCcceeeEEEEecccccccccch
Q psy15660 65 TCHFAIGNAKTIRNDNSSRFGKFTELHFNKHYNIIGASM 103 (178)
Q Consensus 65 ~ylle~~~~~~~rN~nssrf~~~~~~~f~~~~~i~Ga~~ 103 (178)
+.|.++|+|+|.||+||||||||++++|+..+.|.||.+
T Consensus 130 piLEAFGNAkT~~N~NSSRFGK~i~l~f~~~g~i~Ga~i 168 (653)
T cd01379 130 SLVEAFGNARTGINDNSSRFGKYLEMKFTRSGAVVGARI 168 (653)
T ss_pred HHHHHhhccCcCCCCCcccceeEEEEEECCCCcEEEEEE
Confidence 356679999999999999999999999999999999996
No 27
>cd01386 MYSc_type_XVIII Myosin motor domain, type XVIII myosins. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an actin filament. ATP hydrolysis causes the head to pivot and associate with a new actin subunit. The release of Pi causes the
Probab=98.19 E-value=5.7e-07 Score=83.89 Aligned_cols=40 Identities=35% Similarity=0.424 Sum_probs=37.1
Q ss_pred eeeeeecccccccccCCCCcceeeEEEEecccccccccch
Q psy15660 64 RTCHFAIGNAKTIRNDNSSRFGKFTELHFNKHYNIIGASM 103 (178)
Q Consensus 64 ~~ylle~~~~~~~rN~nssrf~~~~~~~f~~~~~i~Ga~~ 103 (178)
.+.|.++|+|+|.||+||||||||++++|+..+.|.||.+
T Consensus 130 npiLEAFGNAkT~rNdNSSRFGK~i~l~F~~~g~i~Ga~i 169 (767)
T cd01386 130 FTILEAFGNVSTALNGNATRFTQILSLDFDQTGQIASASL 169 (767)
T ss_pred chHHHHhhccCcCCCCCcCcceeEEEEEECCCCcEeEEEE
Confidence 3567779999999999999999999999999999999997
No 28
>cd01381 MYSc_type_VII Myosin motor domain, type VII myosins. Myosins in this group have been associated with functions in sensory systems such as vision and hearing. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an actin filament. ATP hydr
Probab=98.17 E-value=5.6e-07 Score=82.92 Aligned_cols=39 Identities=62% Similarity=0.865 Sum_probs=36.2
Q ss_pred eeeeecccccccccCCCCcceeeEEEEecccccccccch
Q psy15660 65 TCHFAIGNAKTIRNDNSSRFGKFTELHFNKHYNIIGASM 103 (178)
Q Consensus 65 ~ylle~~~~~~~rN~nssrf~~~~~~~f~~~~~i~Ga~~ 103 (178)
+.|.++|+|+|.||+||||||||++++|+..+.|.||.+
T Consensus 129 piLEAFGNAkT~~N~NSSRFGK~~~l~F~~~g~i~Ga~i 167 (671)
T cd01381 129 PILEAFGNAKTIRNDNSSRFGKYIDIHFNKRGAIEGAKI 167 (671)
T ss_pred HHHHHhhccccCCCCCccccceeEEEEECCCCcEEEEEE
Confidence 356679999999999999999999999999999999997
No 29
>cd01380 MYSc_type_V Myosin motor domain, type V myosins. Myosins V transport a variety of intracellular cargo processively along actin filaments, such as membraneous organelles and mRNA. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an act
Probab=98.17 E-value=6.1e-07 Score=82.93 Aligned_cols=39 Identities=59% Similarity=0.825 Sum_probs=36.3
Q ss_pred eeeeecccccccccCCCCcceeeEEEEecccccccccch
Q psy15660 65 TCHFAIGNAKTIRNDNSSRFGKFTELHFNKHYNIIGASM 103 (178)
Q Consensus 65 ~ylle~~~~~~~rN~nssrf~~~~~~~f~~~~~i~Ga~~ 103 (178)
+.|.++|+|+|.||+||||||||++++|+..+.|.||.+
T Consensus 135 piLEAFGNAkT~~N~NSSRFGK~~~l~f~~~g~i~Ga~i 173 (691)
T cd01380 135 PIMEAFGNAKTTRNDNSSRFGKYIQILFDKRGRIIGANM 173 (691)
T ss_pred HHHHHhhcCCCCCCCCccccceEEEEEECCCCCEEEEEE
Confidence 356679999999999999999999999999999999997
No 30
>cd01385 MYSc_type_IX Myosin motor domain, type IX myosins. Myosin IX is a processive single-headed motor, which might play a role in signalling. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an actin filament. ATP hydrolysis causes the hea
Probab=98.17 E-value=6.2e-07 Score=82.87 Aligned_cols=39 Identities=44% Similarity=0.639 Sum_probs=36.3
Q ss_pred eeeeecccccccccCCCCcceeeEEEEecccccccccch
Q psy15660 65 TCHFAIGNAKTIRNDNSSRFGKFTELHFNKHYNIIGASM 103 (178)
Q Consensus 65 ~ylle~~~~~~~rN~nssrf~~~~~~~f~~~~~i~Ga~~ 103 (178)
+.|.++|+|+|.||+||||||||++++|+..+.|.||.+
T Consensus 140 piLEAFGNAkT~~N~NSSRFGK~i~l~F~~~g~i~Ga~i 178 (692)
T cd01385 140 PVLEAFGNAKTAHNNNSSRFGKFIQVNYRENGMVRGAVV 178 (692)
T ss_pred HHHHHhhccccCCCCCccccceeEEEEECCCCCEEEEEE
Confidence 466679999999999999999999999999999999986
No 31
>cd01383 MYSc_type_VIII Myosin motor domain, plant-specific type VIII myosins, a subgroup which has been associated with endocytosis, cytokinesis, cell-to-cell coupling and gating at plasmodesmata. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates f
Probab=98.11 E-value=9.4e-07 Score=81.48 Aligned_cols=39 Identities=56% Similarity=0.764 Sum_probs=36.5
Q ss_pred eeeeecccccccccCCCCcceeeEEEEecccccccccch
Q psy15660 65 TCHFAIGNAKTIRNDNSSRFGKFTELHFNKHYNIIGASM 103 (178)
Q Consensus 65 ~ylle~~~~~~~rN~nssrf~~~~~~~f~~~~~i~Ga~~ 103 (178)
+.|.++|+|+|.||+||||||||++++|+..+.|.||.+
T Consensus 134 piLEaFGNAkT~~N~NSSRFGK~~~l~f~~~g~i~ga~i 172 (677)
T cd01383 134 PILEAFGNAKTSRNDNSSRFGKLIEIHFSETGKISGAKI 172 (677)
T ss_pred HHHHHhhccccCCCCCcCccceeEEEEECCCCcEEEEEE
Confidence 466679999999999999999999999999999999997
No 32
>cd01382 MYSc_type_VI Myosin motor domain, type VI myosins. Myosin VI is a monomeric myosin, which moves towards the minus-end of actin filaments, in contrast to most other myosins. It has been implicated in endocytosis, secretion, and cell migration. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the minus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of
Probab=98.09 E-value=1.2e-06 Score=81.32 Aligned_cols=39 Identities=54% Similarity=0.870 Sum_probs=36.3
Q ss_pred eeeeecccccccccCCCCcceeeEEEEecccccccccch
Q psy15660 65 TCHFAIGNAKTIRNDNSSRFGKFTELHFNKHYNIIGASM 103 (178)
Q Consensus 65 ~ylle~~~~~~~rN~nssrf~~~~~~~f~~~~~i~Ga~~ 103 (178)
+.|.++|+|+|.||+||||||+|++++|+..+.|.||.+
T Consensus 134 piLEAFGNAkT~~N~NSSRFGK~~~l~f~~~g~i~Ga~i 172 (717)
T cd01382 134 PLLEAFGNAKTVRNNNSSRFGKFVEIHFNEKNSVVGGFV 172 (717)
T ss_pred HHHHHhhccccCCCCCcccceeEEEEEECCCCCEeEEEE
Confidence 356679999999999999999999999999999999996
No 33
>KOG0163|consensus
Probab=98.07 E-value=2.8e-06 Score=77.75 Aligned_cols=38 Identities=53% Similarity=0.856 Sum_probs=35.3
Q ss_pred eeeecccccccccCCCCcceeeEEEEecccccccccch
Q psy15660 66 CHFAIGNAKTIRNDNSSRFGKFTELHFNKHYNIIGASM 103 (178)
Q Consensus 66 ylle~~~~~~~rN~nssrf~~~~~~~f~~~~~i~Ga~~ 103 (178)
.|.++|+|++.||+||||||+|++++|+..++++|+-+
T Consensus 188 iLEAFGNAKT~RNNNSSRFGKFveiHf~dk~~VvGGyv 225 (1259)
T KOG0163|consen 188 ILEAFGNAKTLRNNNSSRFGKFVEIHFDDKGQVVGGYV 225 (1259)
T ss_pred HHHHhccchhhccCChhhccceEEEEEcCCCceechhh
Confidence 55679999999999999999999999999999999876
No 34
>cd01384 MYSc_type_XI Myosin motor domain, plant-specific type XI myosin, involved in organelle transport. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an actin filament. ATP hydrolysis causes the head to pivot and associate with a new act
Probab=98.06 E-value=1.3e-06 Score=80.62 Aligned_cols=39 Identities=54% Similarity=0.794 Sum_probs=36.4
Q ss_pred eeeeecccccccccCCCCcceeeEEEEecccccccccch
Q psy15660 65 TCHFAIGNAKTIRNDNSSRFGKFTELHFNKHYNIIGASM 103 (178)
Q Consensus 65 ~ylle~~~~~~~rN~nssrf~~~~~~~f~~~~~i~Ga~~ 103 (178)
+.|.++|+|+|.||+||||||||++++|+..+.|.||.+
T Consensus 135 piLEAFGNAkT~~N~NSSRFGK~~~l~f~~~g~i~Ga~i 173 (674)
T cd01384 135 PVLEAFGNAKTVRNNNSSRFGKFVEIQFDDYGRISGAAI 173 (674)
T ss_pred HHHHHhhCCCCCCCCCcchhheeEEEEECCCCcEEEEEE
Confidence 456679999999999999999999999999999999997
No 35
>cd00124 MYSc Myosin motor domain. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an actin filament. ATP hydrolysis causes the head to pivot and associate with a new actin subunit. The release of Pi causes the head to pivot and move the fila
Probab=97.99 E-value=2.4e-06 Score=78.92 Aligned_cols=39 Identities=56% Similarity=0.807 Sum_probs=36.1
Q ss_pred eeeeecccccccccCCCCcceeeEEEEecccccccccch
Q psy15660 65 TCHFAIGNAKTIRNDNSSRFGKFTELHFNKHYNIIGASM 103 (178)
Q Consensus 65 ~ylle~~~~~~~rN~nssrf~~~~~~~f~~~~~i~Ga~~ 103 (178)
+.|.++|+|+|.+|+||||||+|++++|+..+.|.||++
T Consensus 130 ~iLEaFGNAkT~~N~NSSRfGk~~~l~f~~~g~i~ga~i 168 (679)
T cd00124 130 PILEAFGNAKTVRNNNSSRFGKFIELQFDETGKISGAKI 168 (679)
T ss_pred HHHHHhcccccCCCCCcccceeEEEEEECCCCcEeEEEE
Confidence 356679999999999999999999999999999999996
No 36
>cd01378 MYSc_type_I Myosin motor domain, type I myosins. Myosin I generates movement at the leading edge in cell motility, and class I myosins have been implicated in phagocytosis and vesicle transport. Myosin I, an unconventional myosin, does not form dimers. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 picon
Probab=97.98 E-value=2.2e-06 Score=79.13 Aligned_cols=39 Identities=46% Similarity=0.726 Sum_probs=36.3
Q ss_pred eeeeecccccccccCCCCcceeeEEEEecccccccccch
Q psy15660 65 TCHFAIGNAKTIRNDNSSRFGKFTELHFNKHYNIIGASM 103 (178)
Q Consensus 65 ~ylle~~~~~~~rN~nssrf~~~~~~~f~~~~~i~Ga~~ 103 (178)
+.|.++|+|+|.+|+||||||+|++++|+..+.+.||.+
T Consensus 132 piLEAFGNAkT~~N~NSSRFgk~~~l~f~~~g~i~ga~i 170 (674)
T cd01378 132 PLLEAFGNAKTLRNNNSSRFGKYMEIQFDFKGDPVGGKI 170 (674)
T ss_pred HHHHHhhccccCCCCCcchhheeEEEEECCCCCEeeEEE
Confidence 466779999999999999999999999999999999986
No 37
>smart00242 MYSc Myosin. Large ATPases. ATPase; molecular motor. Muscle contraction consists of a cyclical interaction between myosin and actin. The core of the myosin structure is similar in fold to that of kinesin.
Probab=97.97 E-value=2.3e-06 Score=79.01 Aligned_cols=39 Identities=56% Similarity=0.874 Sum_probs=36.3
Q ss_pred eeeeecccccccccCCCCcceeeEEEEecccccccccch
Q psy15660 65 TCHFAIGNAKTIRNDNSSRFGKFTELHFNKHYNIIGASM 103 (178)
Q Consensus 65 ~ylle~~~~~~~rN~nssrf~~~~~~~f~~~~~i~Ga~~ 103 (178)
+.|.++|+|+|.+|+||||||+|++++|+..+.|.||++
T Consensus 138 ~iLEAFGNAkT~~N~NSSRfgk~~~l~f~~~g~i~ga~i 176 (677)
T smart00242 138 PILEAFGNAKTVRNNNSSRFGKFIEIHFDAKGKIVGAKI 176 (677)
T ss_pred HHHHHhhccccCCCCCccchheeEEEEECCCCcEeEEEE
Confidence 356679999999999999999999999999999999996
No 38
>KOG0161|consensus
Probab=97.97 E-value=9.3e-07 Score=88.16 Aligned_cols=131 Identities=18% Similarity=0.251 Sum_probs=78.5
Q ss_pred hhHHHHhccccccCCCCCCCcceeEEEeeccccccccceeeeeeeecccccccccCCCCcceeeEEEEeccccccc-ccc
Q psy15660 24 SPIMEAIGNAKTIRNDNRSRFGKFTELHFNKHYNIIGASMRTCHFAIGNAKTIRNDNSSRFGKFTELHFNKHYNII-GAS 102 (178)
Q Consensus 24 ~~ileafgna~t~rN~NSSRFGKfi~l~f~~~g~i~Ga~I~~ylle~~~~~~~rN~nssrf~~~~~~~f~~~~~i~-Ga~ 102 (178)
.+.+....+++.....+-+.|.+..--....- .||.|++||||++|+. .++.. +..|++||++. |+.
T Consensus 220 LeaFGNa~tvrn~NssRFgkfirI~F~~~G~i---~~a~Ie~yLLEKsRv~-~Q~~~--------Er~yhiFyqlls~~~ 287 (1930)
T KOG0161|consen 220 LEAFGNAKTVRNDNSSRFGKFIRIHFDATGKI---AGADIETYLLEKSRVI-RQAPG--------ERNYHIFYQLLSGAD 287 (1930)
T ss_pred HHHhcChhhhcCCCCcccceeEEEecCCCCcc---chhhHHHHHHHHhHhh-ccCcc--------hhHHHHHHHHHhCCC
Confidence 33444444444444444444444333322222 6899999999999854 33333 33455777774 432
Q ss_pred hhhhccccceEEeecCCCCcceEeeeeccCCCCCcccCCCCccchhhhhhccCCCCCChHHH--HHHHHHHHHhcC
Q psy15660 103 MRTYLLEKSRVVFQAPNERNYHVFYQLCCARDKYPYLLLDEPDSFQYIRECCEIPGVNDEEG--FEETQQAFVTLG 176 (178)
Q Consensus 103 ~~~~llEk~Rv~~~~~~Ernfhifyql~~~~~e~~~l~l~d~~~f~~l~~~~~i~g~~d~e~--~~~l~~Al~~LG 176 (178)
. -+.+. .. ......+|.++. .......+++|++.|..+..+|+++|+++.+. ...+++|+.|||
T Consensus 288 ~--~l~~~--l~-L~~~~~~Y~f~~-----~~~~~i~g~dd~eef~~t~~a~~ilgfs~~E~~~~~~i~sailhlG 353 (1930)
T KOG0161|consen 288 P--ELKEE--LL-LSDNVKDYKFLS-----NGESTIPGVDDAEEFQETDEAMDILGFSEEEKISIFRIVSAILHLG 353 (1930)
T ss_pred H--HHHHH--Hh-hcccchhhhhhc-----cccCCCCCcchHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhc
Confidence 1 11111 10 011223444322 22336778999999999999999999998665 688999999998
No 39
>cd01387 MYSc_type_XV Myosin motor domain, type XV myosins. In vertebrates, myosin XV appears to be expressed in sensory tissue and play a role in hearing. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an actin filament. ATP hydrolysis caus
Probab=97.84 E-value=5.8e-06 Score=76.33 Aligned_cols=38 Identities=55% Similarity=0.728 Sum_probs=34.3
Q ss_pred eeeeecccccccccCCCCcceeeEEEEecccccccccch
Q psy15660 65 TCHFAIGNAKTIRNDNSSRFGKFTELHFNKHYNIIGASM 103 (178)
Q Consensus 65 ~ylle~~~~~~~rN~nssrf~~~~~~~f~~~~~i~Ga~~ 103 (178)
+.|.++|+|+|.||+||||||+|++++|+ .+.|.||.+
T Consensus 131 piLEAFGNAkT~~N~NSSRfGk~~~l~f~-~g~i~Ga~i 168 (677)
T cd01387 131 PLLEAFGNAKTVRNDNSSRFGKFVEIFLE-GGVIVGAIT 168 (677)
T ss_pred HHHHHHhCcCCCCCCCccccceEEEEEec-CCcEeEEEE
Confidence 45667999999999999999999999995 689999996
No 40
>KOG0164|consensus
Probab=97.69 E-value=1.3e-05 Score=73.12 Aligned_cols=38 Identities=47% Similarity=0.719 Sum_probs=34.4
Q ss_pred eeeecccccccccCCCCcceeeEEEEecccccccccch
Q psy15660 66 CHFAIGNAKTIRNDNSSRFGKFTELHFNKHYNIIGASM 103 (178)
Q Consensus 66 ylle~~~~~~~rN~nssrf~~~~~~~f~~~~~i~Ga~~ 103 (178)
.|.++|+|++.||+|||||||||.++||-.+.-.|+.+
T Consensus 143 VLEAFGNAKT~RNdNSSRFGKYMDInFDfKGdPvGG~I 180 (1001)
T KOG0164|consen 143 VLEAFGNAKTNRNDNSSRFGKYMDINFDFKGDPVGGHI 180 (1001)
T ss_pred HHHHhcccccccCCchhhhhcceeeeccccCCcccchH
Confidence 45569999999999999999999999999988888776
No 41
>PF00063 Myosin_head: Myosin head (motor domain); InterPro: IPR001609 Muscle contraction is caused by sliding between the thick and thin filaments of the myofibril. Myosin is a major component of thick filaments and exists as a hexamer of 2 heavy chains [], 2 alkali light chains, and 2 regulatory light chains. The heavy chain can be subdivided into the N-terminal globular head and the C-terminal coiled-coil rod-like tail, although some forms have a globular region in their C-terminal. There are many cell-specific isoforms of myosin heavy chains, coded for by a multi-gene family []. Myosin interacts with actin to convert chemical energy, in the form of ATP, to mechanical energy []. The 3-D structure of the head portion of myosin has been determined [] and a model for actin-myosin complex has been constructed []. The globular head is well conserved, some highly-conserved regions possibly relating to functional and structural domains []. The rod-like tail starts with an invariant proline residue, and contains many repeats of a 28 residue region, interrupted at 4 regularly-spaced points known as skip residues. Although the sequence of the tail is not well conserved, the chemical character is, hydrophobic, charged and skip residues occuring in a highly ordered and repeated fashion [].; GO: 0003774 motor activity, 0005524 ATP binding, 0016459 myosin complex; PDB: 1LKX_A 2V26_A 2BKI_A 3L9I_A 2BKH_A 2X51_A 2VB6_A 2VAS_A 1OE9_A 1W8J_A ....
Probab=97.66 E-value=1e-05 Score=74.85 Aligned_cols=38 Identities=61% Similarity=0.837 Sum_probs=35.5
Q ss_pred eeeecccccccccCCCCcceeeEEEEecccccccccch
Q psy15660 66 CHFAIGNAKTIRNDNSSRFGKFTELHFNKHYNIIGASM 103 (178)
Q Consensus 66 ylle~~~~~~~rN~nssrf~~~~~~~f~~~~~i~Ga~~ 103 (178)
.|.++|+|+|.+|+||||||+|++++|+..+.+.|+++
T Consensus 134 iLeaFGnAkT~~N~nSSRfgk~~~l~f~~~~~~~g~~i 171 (689)
T PF00063_consen 134 ILEAFGNAKTPRNDNSSRFGKFIELQFDDSGQIVGAKI 171 (689)
T ss_dssp HHHHHHEEEESSETTEESSEEEEEEEEETTSSEEEEEE
T ss_pred hhhhhcccccccCCcccccceEEEEEecccccccccce
Confidence 55669999999999999999999999999999999996
No 42
>KOG0162|consensus
Probab=97.14 E-value=0.00029 Score=64.73 Aligned_cols=41 Identities=24% Similarity=0.368 Sum_probs=25.5
Q ss_pred CcccCCCCccchhhhhhccCCCCCChHH--HHHHHHHHHHhcC
Q psy15660 136 YPYLLLDEPDSFQYIRECCEIPGVNDEE--GFEETQQAFVTLG 176 (178)
Q Consensus 136 ~~~l~l~d~~~f~~l~~~~~i~g~~d~e--~~~~l~~Al~~LG 176 (178)
+...+++|..+|..+..+|.+.|+.+.+ +..+++++++|||
T Consensus 243 ~s~D~idd~kdfq~Tl~AM~vIGi~~~eQ~~v~rmva~IL~lG 285 (1106)
T KOG0162|consen 243 YSVDDIDDRKDFQETLHAMKVIGINQEEQDEVLRMVAGILHLG 285 (1106)
T ss_pred eeccccchHHHHHHHHHHheeccCChHHHHHHHHHHHHHHhcc
Confidence 4455566666677666667766666433 3456666666666
No 43
>KOG0160|consensus
Probab=96.92 E-value=9.3e-05 Score=69.42 Aligned_cols=38 Identities=55% Similarity=0.745 Sum_probs=35.0
Q ss_pred eeeecccccccccCCCCcceeeEEEEecccccccccch
Q psy15660 66 CHFAIGNAKTIRNDNSSRFGKFTELHFNKHYNIIGASM 103 (178)
Q Consensus 66 ylle~~~~~~~rN~nssrf~~~~~~~f~~~~~i~Ga~~ 103 (178)
.+.++|++.+.||+||||||+|++++|+..++|.||.+
T Consensus 140 i~EafgNakT~rndnsSrFgK~iei~Fd~~~~I~GA~~ 177 (862)
T KOG0160|consen 140 ILEAFGNAKTTRNDNSSRFGKVIEITFDQQGRISGAKI 177 (862)
T ss_pred cchhhccchhhhcccHHHhhhHHHHhhhhhccccccee
Confidence 34469999999999999999999999999999999985
No 44
>cd01363 Motor_domain Myosin and Kinesin motor domain. These ATPases belong to the P-loop NTPase family and provide the driving force in myosin and kinesin mediated processes.
Probab=94.03 E-value=0.047 Score=42.42 Aligned_cols=39 Identities=23% Similarity=0.221 Sum_probs=32.8
Q ss_pred HHhhhhHHHHhc-cccccCCCCCCCcceeEEEeecccccc
Q psy15660 20 VLAYSPIMEAIG-NAKTIRNDNRSRFGKFTELHFNKHYNI 58 (178)
Q Consensus 20 ~~~~~~ileafg-na~t~rN~NSSRFGKfi~l~f~~~g~i 58 (178)
+++..+..+++. +++|.+|++|||+..+++|++......
T Consensus 58 ~~~ll~~g~~~R~~~~t~~N~~SSRsH~i~~i~v~~~~~~ 97 (186)
T cd01363 58 VIDLMDKGNANRTTAATAMNEHSSRSHSVFRIHFGGKNAL 97 (186)
T ss_pred HHHHHhhccccccccccCCCCccCcccEEEEEEEEEeecC
Confidence 666777777888 899999999999999999999865443
No 45
>KOG4229|consensus
Probab=93.72 E-value=0.024 Score=54.92 Aligned_cols=35 Identities=57% Similarity=0.713 Sum_probs=29.6
Q ss_pred eeeecccccccccCCCCcceeeEEEEecccccccc
Q psy15660 66 CHFAIGNAKTIRNDNSSRFGKFTELHFNKHYNIIG 100 (178)
Q Consensus 66 ylle~~~~~~~rN~nssrf~~~~~~~f~~~~~i~G 100 (178)
.|..+++|.+.+|+||||||+|+++.|...+.+.|
T Consensus 193 llEafgnA~t~~ndnssrfgk~i~~~~~~~g~i~G 227 (1062)
T KOG4229|consen 193 LLEAFGNAKTPRNDNSSRFGKYIKVNFRKTGIIEG 227 (1062)
T ss_pred HHHHhcccCCcccCchhhhhheEEeccccCCCCCc
Confidence 34459999999999999999999999988765554
No 46
>PF08199 E2: Bacteriophage E2-like protein; InterPro: IPR013184 This is a family of short conserved proteins of 37 amino acids, described in Lactococcus phage c2 and in related phage. The function of these proteins is unknown.
Probab=80.06 E-value=0.16 Score=28.30 Aligned_cols=8 Identities=75% Similarity=1.302 Sum_probs=7.2
Q ss_pred CCcceeEE
Q psy15660 42 SRFGKFTE 49 (178)
Q Consensus 42 SRFGKfi~ 49 (178)
|||||||+
T Consensus 8 ~rfgk~ik 15 (37)
T PF08199_consen 8 SRFGKFIK 15 (37)
T ss_pred HHHHHHHH
Confidence 79999997
No 47
>cd01363 Motor_domain Myosin and Kinesin motor domain. These ATPases belong to the P-loop NTPase family and provide the driving force in myosin and kinesin mediated processes.
Probab=40.20 E-value=22 Score=27.27 Aligned_cols=27 Identities=30% Similarity=0.375 Sum_probs=21.6
Q ss_pred cccccccCCCCcceeeEEEEecccccc
Q psy15660 72 NAKTIRNDNSSRFGKFTELHFNKHYNI 98 (178)
Q Consensus 72 ~~~~~rN~nssrf~~~~~~~f~~~~~i 98 (178)
.+.+.+|.+|||.|.++++++......
T Consensus 71 ~~~t~~N~~SSRsH~i~~i~v~~~~~~ 97 (186)
T cd01363 71 TAATAMNEHSSRSHSVFRIHFGGKNAL 97 (186)
T ss_pred ccccCCCCccCcccEEEEEEEEEeecC
Confidence 366789999999999999998764433
No 48
>COG3970 Fumarylacetoacetate (FAA) hydrolase family protein [General function prediction only]
Probab=31.68 E-value=78 Score=27.08 Aligned_cols=81 Identities=20% Similarity=0.342 Sum_probs=47.8
Q ss_pred HHHhccccccCCCCCC-CcceeEEEe---------------eccccccccceeee------------eeeeccccccccc
Q psy15660 27 MEAIGNAKTIRNDNRS-RFGKFTELH---------------FNKHYNIIGASMRT------------CHFAIGNAKTIRN 78 (178)
Q Consensus 27 leafgna~t~rN~NSS-RFGKfi~l~---------------f~~~g~i~Ga~I~~------------ylle~~~~~~~rN 78 (178)
-|-|.-|.+ +|| -+|-.|-++ .+.+|+|.||.|-+ -||.+. .-|
T Consensus 169 aEIFtKaqp----mssVG~Ga~Igv~~~S~WnnPEPEvvl~~dS~G~I~GaTlgnDVnlRD~EgrsaLlL~ka----Kdn 240 (379)
T COG3970 169 AEIFTKAQP----MSSVGHGAQIGVRPDSEWNNPEPEVVLAVDSSGKIVGATLGNDVNLRDFEGRSALLLSKA----KDN 240 (379)
T ss_pred hhheecCCc----cccccccceeeeccccccCCCCCeEEEEEcCCCcEEeeeecCcccccccccccchhcccc----ccc
Confidence 466766666 666 688888655 45589999999932 233332 455
Q ss_pred CCCCcceeeEEEEecccccccccchhhhccccceEEeecCCCCcc
Q psy15660 79 DNSSRFGKFTELHFNKHYNIIGASMRTYLLEKSRVVFQAPNERNY 123 (178)
Q Consensus 79 ~nssrf~~~~~~~f~~~~~i~Ga~~~~~llEk~Rv~~~~~~Ernf 123 (178)
+-|+-+|-|+.+ |+....+- -+++..|.+.-.+|..|
T Consensus 241 nasCaiGPfIrl-fDe~f~~~-------dv~~a~vtLkv~gedgf 277 (379)
T COG3970 241 NASCAIGPFIRL-FDETFTID-------DVKSAEVTLKVTGEDGF 277 (379)
T ss_pred CccccccceEEe-ecCCCChh-------hhhhceEEEEEEccCce
Confidence 567779998854 44433321 13334444444555554
No 49
>PF01581 FARP: FMRFamide related peptide family; InterPro: IPR002544 The neuropeptide Phe-Met-Arg-Phe-NH2 (FMRFamide) is a potent cardioactive neuropeptide in Lymnaea stagnalis []. FMRFamide (Phe-Met-Arg-Phe-NH2) was first demonstrated to be cardioactive in several molluscan species. FMRFamide is now known to be cardioexcitatory in mammals, to inhibit morphine-induced antinociception, and to block morphine-, defeat-, and deprivation-induced feeding []. Thirteen neuropeptides varying in length from 7 to 11 residues and ending C-terminally in -Phe-Met-Arg-Phe-NH2 (calliFMRFamides 1-13) and one dodecapeptide ending in -Met-Ile-Arg-Phe-NH2 (calliMIRFamide 1) have been isolated from thoracic ganglia of the blowfly Calliphora vomitoria. Results indicate that the N terminus (in addition to the C terminus as previously found for FMRFamides of other organisms) is crucial for at least some biological activities [].; GO: 0007218 neuropeptide signaling pathway
Probab=30.07 E-value=28 Score=14.45 Aligned_cols=9 Identities=44% Similarity=0.911 Sum_probs=5.4
Q ss_pred CCCCCCcce
Q psy15660 38 NDNRSRFGK 46 (178)
Q Consensus 38 N~NSSRFGK 46 (178)
+.+-=||||
T Consensus 3 ~~~~~RFGr 11 (11)
T PF01581_consen 3 DNNFMRFGR 11 (11)
T ss_pred cccccccCC
Confidence 444567776
No 50
>PF02852 Pyr_redox_dim: Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain; InterPro: IPR004099 This entry represents a dimerisation domain that is usually found at the C-terminal of both class I and class II oxidoreductases, as well as in NADH oxidases and peroxidases [, , ].; GO: 0016491 oxidoreductase activity, 0050660 flavin adenine dinucleotide binding, 0045454 cell redox homeostasis, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 3II4_B 2A8X_A 2BC0_B 2BC1_B 2W0H_A 2X50_B 2JK6_A 2YAU_A 2EQ9_E 2EQ6_B ....
Probab=28.86 E-value=43 Score=23.13 Aligned_cols=18 Identities=39% Similarity=0.647 Sum_probs=15.7
Q ss_pred eEEEeecc-ccccccceee
Q psy15660 47 FTELHFNK-HYNIIGASMR 64 (178)
Q Consensus 47 fi~l~f~~-~g~i~Ga~I~ 64 (178)
|++|-||. +|+|.|+.|-
T Consensus 50 ~~Kli~d~~t~~IlGa~~v 68 (110)
T PF02852_consen 50 FVKLIFDKKTGRILGAQIV 68 (110)
T ss_dssp EEEEEEETTTTBEEEEEEE
T ss_pred eeEEEEEeeccceeeeeee
Confidence 77999997 8899999985
No 51
>PF07499 RuvA_C: RuvA, C-terminal domain; InterPro: IPR011114 In prokaryotes, RuvA, RuvB, and RuvC process the universal DNA intermediate of homologous recombination, termed Holliday junction. The tetrameric DNA helicase RuvA specifically binds to the Holliday junction and facilitates the isomerization of the junction from the stacked folded configuration to the square-planar structure []. In the RuvA tetramer, each subunit consists of three domains, I, II and III, where I and II form the major core that is responsible for Holliday junction binding and base pair rearrangements of Holliday junction executed at the crossover point, whereas domain III regulates branch migration through direct contact with RuvB. The domain represents the C-terminal domain III of RuvA. This domain plays a significant role in the ATP-dependent branch migration of the hetero-duplex through direct contact with RuvB []. Within the Holliday junction, this domain makes no interaction with the DNA.; GO: 0005524 ATP binding, 0009378 four-way junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination, 0009379 Holliday junction helicase complex; PDB: 1HJP_A 1CUK_A 1C7Y_A 1IXS_A 1IXR_B 1BVS_E 2ZTC_A 2ZTD_B 2H5X_A.
Probab=27.69 E-value=65 Score=19.03 Aligned_cols=15 Identities=27% Similarity=0.607 Sum_probs=11.8
Q ss_pred HHHHHHHHHHhcCCC
Q psy15660 164 GFEETQQAFVTLGEN 178 (178)
Q Consensus 164 ~~~~l~~Al~~LG~~ 178 (178)
...++..||..|||+
T Consensus 2 ~~~d~~~AL~~LGy~ 16 (47)
T PF07499_consen 2 ALEDALEALISLGYS 16 (47)
T ss_dssp HHHHHHHHHHHTTS-
T ss_pred HHHHHHHHHHHcCCC
Confidence 457889999999985
No 52
>PRK05783 hypothetical protein; Provisional
Probab=25.23 E-value=48 Score=22.59 Aligned_cols=16 Identities=19% Similarity=0.335 Sum_probs=13.0
Q ss_pred CCCCcceeEEEeeccc
Q psy15660 40 NRSRFGKFTELHFNKH 55 (178)
Q Consensus 40 NSSRFGKfi~l~f~~~ 55 (178)
.+-|-|||++|.++..
T Consensus 36 ~~VRvGK~iel~l~~~ 51 (84)
T PRK05783 36 IEVRAGKYLVFKIEAN 51 (84)
T ss_pred ceEEeeEEEEEEEcCC
Confidence 4567899999999864
No 53
>PF11405 Inhibitor_I67: Bromelain inhibitor VI; InterPro: IPR022713 Bromelain inhibitor VI is a double-chain inhibitor consisting of an 11-residue and a 41-residue chain. This protein is the 41-residue heavy chain which is joined to the 11-residue chain by disulphide bonds. The inhibitor acts to inhibit the cysteine proteinase bromelain. ; PDB: 2BI6_H 1BI6_H.
Probab=24.68 E-value=51 Score=18.63 Aligned_cols=12 Identities=33% Similarity=0.650 Sum_probs=8.2
Q ss_pred CCcceeEEEeec
Q psy15660 42 SRFGKFTELHFN 53 (178)
Q Consensus 42 SRFGKfi~l~f~ 53 (178)
..|||||-|..-
T Consensus 23 aefgkyicldli 34 (41)
T PF11405_consen 23 AEFGKYICLDLI 34 (41)
T ss_dssp EETTEEEE-EE-
T ss_pred HHhcceEEEEec
Confidence 369999998764
Done!