RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy15660
(178 letters)
>gnl|CDD|238676 cd01380, MYSc_type_V, Myosin motor domain, type V myosins. Myosins
V transport a variety of intracellular cargo
processively along actin filaments, such as membraneous
organelles and mRNA. This catalytic (head) domain has
ATPase activity and belongs to the larger group of
P-loop NTPases. Myosins are actin-dependent molecular
motors that play important roles in muscle contraction,
cell motility, and organelle transport. The head domain
is a molecular motor, which utilizes ATP hydrolysis to
generate directed movement toward the plus end along
actin filaments. A cyclical interaction between myosin
and actin provides the driving force. Rates of ATP
hydrolysis and consequently the speed of movement along
actin filaments vary widely, from about 0.04 micrometer
per second for myosin I to 4.5 micrometer per second for
myosin II in skeletal muscle. Myosin II moves in
discrete steps about 5-10 nm long and generates 1-5
piconewtons of force. Upon ATP binding, the myosin head
dissociates from an actin filament. ATP hydrolysis
causes the head to pivot and associate with a new actin
subunit. The release of Pi causes the head to pivot and
move the filament (power stroke). Release of ADP
completes the cycle.
Length = 691
Score = 201 bits (514), Expect = 1e-61
Identities = 86/184 (46%), Positives = 99/184 (53%), Gaps = 48/184 (26%)
Query: 1 MRYFATVGGSQT----ETQVEKKVLAYSPIMEAIGNAKTIRNDNRSRFGKFTELHFNKHY 56
MRYFA+VGGS + ETQVE+KVLA +PIMEA GNAKT RNDN
Sbjct: 107 MRYFASVGGSDSREVSETQVEEKVLASNPIMEAFGNAKTTRNDN---------------- 150
Query: 57 NIIGASMRTCHFAIGNAKTIRNDNSSRFGKFTELHFNKHYNIIGASMRTYLLEKSRVVFQ 116
SSRFGK+ ++ F+K IIGA+MRTYLLEKSRVVFQ
Sbjct: 151 ------------------------SSRFGKYIQILFDKRGRIIGANMRTYLLEKSRVVFQ 186
Query: 117 APNERNYHVFYQLC--CARDKYPYLLLDEPDSFQYIR--ECCEIPGVNDEEGFEETQQAF 172
AP ERNYH+FYQLC + L L D F Y+ I GV+D E F T QA
Sbjct: 187 APGERNYHIFYQLCAGAPSQELKELHLGHADKFNYLNQGGAPTIEGVDDAEDFNATVQAL 246
Query: 173 VTLG 176
LG
Sbjct: 247 TLLG 250
>gnl|CDD|214580 smart00242, MYSc, Myosin. Large ATPases. ATPase; molecular motor.
Muscle contraction consists of a cyclical interaction
between myosin and actin. The core of the myosin
structure is similar in fold to that of kinesin.
Length = 677
Score = 178 bits (453), Expect = 6e-53
Identities = 72/181 (39%), Positives = 94/181 (51%), Gaps = 45/181 (24%)
Query: 1 MRYFATVGGSQTE-TQVEKKVLAYSPIMEAIGNAKTIRNDNRSRFGKFTELHFNKHYNII 59
M+Y A+V GS TE VE ++L +PI+EA GNAKT+RN+N
Sbjct: 113 MQYLASVSGSNTEVGSVEDQILESNPILEAFGNAKTLRNNN------------------- 153
Query: 60 GASMRTCHFAIGNAKTIRNDNSSRFGKFTELHFNKHYNIIGASMRTYLLEKSRVVFQAPN 119
SSRFGKF E+HF+ IIGA + TYLLEKSRVV QA
Sbjct: 154 ---------------------SSRFGKFIEIHFDAKGKIIGAKIETYLLEKSRVVSQAKG 192
Query: 120 ERNYHVFYQLCCARDK--YPYLLLDEPDSFQYIRE--CCEIPGVNDEEGFEETQQAFVTL 175
ERNYH+FYQL + L L P+ ++Y+ + C + G++D E F+ET A L
Sbjct: 193 ERNYHIFYQLLAGASEELKKELGLKSPEDYRYLNQGGCLTVDGIDDAEEFKETLNAMRVL 252
Query: 176 G 176
G
Sbjct: 253 G 253
>gnl|CDD|238071 cd00124, MYSc, Myosin motor domain. This catalytic (head) domain
has ATPase activity and belongs to the larger group of
P-loop NTPases. Myosins are actin-dependent molecular
motors that play important roles in muscle contraction,
cell motility, and organelle transport. The head domain
is a molecular motor, which utilizes ATP hydrolysis to
generate directed movement toward the plus end along
actin filaments. A cyclical interaction between myosin
and actin provides the driving force. Rates of ATP
hydrolysis and consequently the speed of movement along
actin filaments vary widely, from about 0.04 micrometer
per second for myosin I to 4.5 micrometer per second for
myosin II in skeletal muscle. Myosin II moves in
discrete steps about 5-10 nm long and generates 1-5
piconewtons of force. Upon ATP binding, the myosin head
dissociates from an actin filament. ATP hydrolysis
causes the head to pivot and associate with a new actin
subunit. The release of Pi causes the head to pivot and
move the filament (power stroke). Release of ADP
completes the cycle.
Length = 679
Score = 158 bits (402), Expect = 1e-45
Identities = 69/180 (38%), Positives = 99/180 (55%), Gaps = 45/180 (25%)
Query: 1 MRYFATVGGSQTETQVEKKVLAYSPIMEAIGNAKTIRNDNRSRFGKFTELHFNKHYNIIG 60
M+Y A++ GS +E+K+LA +PI+EA GNAKT+RN+N
Sbjct: 107 MKYLASLAGSNDTG-IEEKILAANPILEAFGNAKTVRNNN-------------------- 145
Query: 61 ASMRTCHFAIGNAKTIRNDNSSRFGKFTELHFNKHYNIIGASMRTYLLEKSRVVFQAPNE 120
SSRFGKF EL F++ I GA + TYLLEKSRVV Q P E
Sbjct: 146 --------------------SSRFGKFIELQFDETGKISGAKITTYLLEKSRVVSQEPGE 185
Query: 121 RNYHVFYQLC--CARDKYPYLLLDEPDSFQYIRE--CCEIPGVNDEEGFEETQQAFVTLG 176
RN+H+FYQL + ++ L L P+S++Y+ + C ++ G++D E FEE ++A +LG
Sbjct: 186 RNFHIFYQLLAGASPEERKKLGLKRPESYRYLNQGGCNDVDGIDDAEEFEELKEALKSLG 245
>gnl|CDD|227355 COG5022, COG5022, Myosin heavy chain [Cytoskeleton].
Length = 1463
Score = 158 bits (401), Expect = 3e-45
Identities = 68/182 (37%), Positives = 97/182 (53%), Gaps = 46/182 (25%)
Query: 1 MRYFATVGGSQTE--TQVEKKVLAYSPIMEAIGNAKTIRNDNRSRFGKFTELHFNKHYNI 58
M+Y A+V S T + +EK++LA +PI+EA GNAKT+RNDN
Sbjct: 173 MQYLASVTSSSTVEISSIEKQILATNPILEAFGNAKTVRNDN------------------ 214
Query: 59 IGASMRTCHFAIGNAKTIRNDNSSRFGKFTELHFNKHYNIIGASMRTYLLEKSRVVFQAP 118
SSRFGK+ ++ F+++ I GA + TYLLEKSRVV Q
Sbjct: 215 ----------------------SSRFGKYIKIEFDENGEICGAKIETYLLEKSRVVHQNK 252
Query: 119 NERNYHVFYQLC-CARDKYPYLLLDE-PDSFQYIRE--CCEIPGVNDEEGFEETQQAFVT 174
NERNYH+FYQL ++ LLL + P + Y+ + C +I G++D + F+ T A T
Sbjct: 253 NERNYHIFYQLLAGDPEELKKLLLLQNPKDYIYLSQGGCDKIDGIDDAKEFKITLDALKT 312
Query: 175 LG 176
+G
Sbjct: 313 IG 314
>gnl|CDD|215687 pfam00063, Myosin_head, Myosin head (motor domain).
Length = 679
Score = 155 bits (393), Expect = 2e-44
Identities = 64/185 (34%), Positives = 95/185 (51%), Gaps = 52/185 (28%)
Query: 1 MRYFATVGGSQTET--QVEKKVLAYSPIMEAIGNAKTIRNDNRSRFGKFTELHFNKHYNI 58
M+Y A+V GS +E ++L +PI+EA GNAKT+RN+N
Sbjct: 106 MQYLASVSGSTPSAVGPLEDQILQSNPILEAFGNAKTLRNNN------------------ 147
Query: 59 IGASMRTCHFAIGNAKTIRNDNSSRFGKFTELHFNKHYNIIGASMRTYLLEKSRVVFQAP 118
SSRFGKF E+ F+ +I+G ++ TYLLEKSRVV+Q P
Sbjct: 148 ----------------------SSRFGKFIEIQFDATGSIVGGNIETYLLEKSRVVYQTP 185
Query: 119 NERNYHVFYQLCC-----ARDKYPYLLLDEPDSFQYIRE--CCEIPGVNDEEGFEETQQA 171
ERN+H+FYQL + + L L +P + Y+ + C +PG++D E F++T+ A
Sbjct: 186 GERNFHIFYQLLAGASAQEKKE---LGLKDPKDYAYLSQSGCYTVPGIDDAEEFKDTRSA 242
Query: 172 FVTLG 176
+G
Sbjct: 243 LKIIG 247
>gnl|CDD|238673 cd01377, MYSc_type_II, Myosin motor domain, type II myosins. Myosin
II mediates cortical contraction in cell motility, and
is the motor in smooth and skeletal muscle. This
catalytic (head) domain has ATPase activity and belongs
to the larger group of P-loop NTPases. Myosins are
actin-dependent molecular motors that play important
roles in muscle contraction, cell motility, and
organelle transport. The head domain is a molecular
motor, which utilizes ATP hydrolysis to generate
directed movement toward the plus end along actin
filaments. A cyclical interaction between myosin and
actin provides the driving force. Rates of ATP
hydrolysis and consequently the speed of movement along
actin filaments vary widely, from about 0.04 micrometer
per second for myosin I to 4.5 micrometer per second for
myosin II in skeletal muscle. Myosin II moves in
discrete steps about 5-10 nm long and generates 1-5
piconewtons of force. Upon ATP binding, the myosin head
dissociates from an actin filament. ATP hydrolysis
causes the head to pivot and associate with a new actin
subunit. The release of Pi causes the head to pivot and
move the filament (power stroke). Release of ADP
completes the cycle.
Length = 693
Score = 147 bits (374), Expect = 1e-41
Identities = 71/186 (38%), Positives = 90/186 (48%), Gaps = 52/186 (27%)
Query: 3 YFATVGGSQTET--------QVEKKVLAYSPIMEAIGNAKTIRNDNRSRFGKFTELHFNK 54
Y A+V S + +E ++L +PI+EA GNAKT+RNDN
Sbjct: 114 YLASVAASSKKKKQSGKGQGTLEDQILQANPILEAFGNAKTVRNDN-------------- 159
Query: 55 HYNIIGASMRTCHFAIGNAKTIRNDNSSRFGKFTELHFNKHYNIIGASMRTYLLEKSRVV 114
SSRFGKF +HF I GA + TYLLEKSRVV
Sbjct: 160 --------------------------SSRFGKFIRIHFGNTGKIAGADIETYLLEKSRVV 193
Query: 115 FQAPNERNYHVFYQLCCARD---KYPYLLLDEPDSFQYIRE-CCEIPGVNDEEGFEETQQ 170
FQA ERNYH+FYQL D K LL P+ ++Y+ + IPGV+D E F+ T +
Sbjct: 194 FQASGERNYHIFYQLLSGADPELKSMLLLTGNPNDYRYLSQGELTIPGVDDAEEFKLTDE 253
Query: 171 AFVTLG 176
AF LG
Sbjct: 254 AFDILG 259
>gnl|CDD|238680 cd01384, MYSc_type_XI, Myosin motor domain, plant-specific type XI
myosin, involved in organelle transport. This catalytic
(head) domain has ATPase activity and belongs to the
larger group of P-loop NTPases. Myosins are
actin-dependent molecular motors that play important
roles in muscle contraction, cell motility, and
organelle transport. The head domain is a molecular
motor, which utilizes ATP hydrolysis to generate
directed movement toward the plus end along actin
filaments. A cyclical interaction between myosin and
actin provides the driving force. Rates of ATP
hydrolysis and consequently the speed of movement along
actin filaments vary widely, from about 0.04 micrometer
per second for myosin I to 4.5 micrometer per second for
myosin II in skeletal muscle. Myosin II moves in
discrete steps about 5-10 nm long and generates 1-5
piconewtons of force. Upon ATP binding, the myosin head
dissociates from an actin filament. ATP hydrolysis
causes the head to pivot and associate with a new actin
subunit. The release of Pi causes the head to pivot and
move the filament (power stroke). Release of ADP
completes the cycle.
Length = 674
Score = 138 bits (350), Expect = 2e-38
Identities = 67/181 (37%), Positives = 94/181 (51%), Gaps = 45/181 (24%)
Query: 1 MRYFATVGG-SQTETQ-VEKKVLAYSPIMEAIGNAKTIRNDNRSRFGKFTELHFNKHYNI 58
MRY A +GG + E + VE++VL +P++EA GNAKT+RN+N
Sbjct: 109 MRYLAYMGGRAGVEGRTVEQQVLESNPVLEAFGNAKTVRNNN------------------ 150
Query: 59 IGASMRTCHFAIGNAKTIRNDNSSRFGKFTELHFNKHYNIIGASMRTYLLEKSRVVFQAP 118
SSRFGKF E+ F+ + I GA++RTYLLE+SRV +
Sbjct: 151 ----------------------SSRFGKFVEIQFDDYGRISGAAIRTYLLERSRVCQISD 188
Query: 119 NERNYHVFYQLCCARDKY-PYLLLDEPDSFQYIRE--CCEIPGVNDEEGFEETQQAFVTL 175
ERNYH FYQLC A + L +P F Y+ + C E+ GV+D E + T++A +
Sbjct: 189 PERNYHCFYQLCAAPPEDVKKYKLGDPKEFHYLNQSNCFELDGVDDAEEYLATRRAMDVV 248
Query: 176 G 176
G
Sbjct: 249 G 249
>gnl|CDD|238674 cd01378, MYSc_type_I, Myosin motor domain, type I myosins. Myosin I
generates movement at the leading edge in cell motility,
and class I myosins have been implicated in phagocytosis
and vesicle transport. Myosin I, an unconventional
myosin, does not form dimers. This catalytic (head)
domain has ATPase activity and belongs to the larger
group of P-loop NTPases. Myosins are actin-dependent
molecular motors that play important roles in muscle
contraction, cell motility, and organelle transport. The
head domain is a molecular motor, which utilizes ATP
hydrolysis to generate directed movement toward the plus
end along actin filaments. A cyclical interaction
between myosin and actin provides the driving force.
Rates of ATP hydrolysis and consequently the speed of
movement along actin filaments vary widely, from about
0.04 micrometer per second for myosin I to 4.5
micrometer per second for myosin II in skeletal muscle.
Myosin II moves in discrete steps about 5-10 nm long and
generates 1-5 piconewtons of force. Upon ATP binding,
the myosin head dissociates from an actin filament. ATP
hydrolysis causes the head to pivot and associate with a
new actin subunit. The release of Pi causes the head to
pivot and move the filament (power stroke). Release of
ADP completes the cycle.
Length = 674
Score = 134 bits (340), Expect = 5e-37
Identities = 58/181 (32%), Positives = 89/181 (49%), Gaps = 45/181 (24%)
Query: 1 MRYFATVGGSQTETQ-VEKKVLAYSPIMEAIGNAKTIRNDNRSRFGKFTELHFNKHYNII 59
M+Y A V G + + V+ +L +P++EA GNAKT+RN+
Sbjct: 107 MQYIAAVSGGGQKVERVKDVILQSNPLLEAFGNAKTLRNN-------------------- 146
Query: 60 GASMRTCHFAIGNAKTIRNDNSSRFGKFTELHFNKHYNIIGASMRTYLLEKSRVVFQAPN 119
NSSRFGK+ E+ F+ + +G + YLLEKSRVV Q
Sbjct: 147 --------------------NSSRFGKYMEIQFDFKGDPVGGKITNYLLEKSRVVSQNKG 186
Query: 120 ERNYHVFYQLCCARDKYPY--LLLDEPDSFQYIR--ECCEIPGVNDEEGFEETQQAFVTL 175
ERN+H+FYQL + L L +P+ + Y+ +C + G++D++ F+ETQ A +
Sbjct: 187 ERNFHIFYQLLAGASEQLLRELGLQKPEYYYYLNQSQCYTVDGIDDKKDFKETQNAMKVI 246
Query: 176 G 176
G
Sbjct: 247 G 247
>gnl|CDD|238677 cd01381, MYSc_type_VII, Myosin motor domain, type VII myosins.
Myosins in this group have been associated with
functions in sensory systems such as vision and hearing.
This catalytic (head) domain has ATPase activity and
belongs to the larger group of P-loop NTPases. Myosins
are actin-dependent molecular motors that play important
roles in muscle contraction, cell motility, and
organelle transport. The head domain is a molecular
motor, which utilizes ATP hydrolysis to generate
directed movement toward the plus end along actin
filaments. A cyclical interaction between myosin and
actin provides the driving force. Rates of ATP
hydrolysis and consequently the speed of movement along
actin filaments vary widely, from about 0.04 micrometer
per second for myosin I to 4.5 micrometer per second for
myosin II in skeletal muscle. Myosin II moves in
discrete steps about 5-10 nm long and generates 1-5
piconewtons of force. Upon ATP binding, the myosin head
dissociates from an actin filament. ATP hydrolysis
causes the head to pivot and associate with a new actin
subunit. The release of Pi causes the head to pivot and
move the filament (power stroke). Release of ADP
completes the cycle.
Length = 671
Score = 117 bits (296), Expect = 3e-31
Identities = 52/112 (46%), Positives = 69/112 (61%), Gaps = 4/112 (3%)
Query: 69 AIGNAKTIRNDNSSRFGKFTELHFNKHYNIIGASMRTYLLEKSRVVFQAPNERNYHVFYQ 128
A GNAKTIRNDNSSRFGK+ ++HFNK I GA + YLLEKSR+V QA +ERNYH+FY
Sbjct: 133 AFGNAKTIRNDNSSRFGKYIDIHFNKRGAIEGAKIEQYLLEKSRIVRQARDERNYHIFYC 192
Query: 129 LCC--ARDKYPYLLLDEPDSFQYIRE--CCEIPGVNDEEGFEETQQAFVTLG 176
+ + D+ L L E + Y+ + C G +D + F + + A L
Sbjct: 193 MLAGLSTDEKERLKLGEASDYHYLAQGGCITCEGRDDAKDFADIRSAMKVLM 244
>gnl|CDD|238679 cd01383, MYSc_type_VIII, Myosin motor domain, plant-specific type
VIII myosins, a subgroup which has been associated with
endocytosis, cytokinesis, cell-to-cell coupling and
gating at plasmodesmata. This catalytic (head) domain
has ATPase activity and belongs to the larger group of
P-loop NTPases. Myosins are actin-dependent molecular
motors that play important roles in muscle contraction,
cell motility, and organelle transport. The head domain
is a molecular motor, which utilizes ATP hydrolysis to
generate directed movement toward the plus end along
actin filaments. A cyclical interaction between myosin
and actin provides the driving force. Rates of ATP
hydrolysis and consequently the speed of movement along
actin filaments vary widely, from about 0.04 micrometer
per second for myosin I to 4.5 micrometer per second for
myosin II in skeletal muscle. Myosin II moves in
discrete steps about 5-10 nm long and generates 1-5
piconewtons of force. Upon ATP binding, the myosin head
dissociates from an actin filament. ATP hydrolysis
causes the head to pivot and associate with a new actin
subunit. The release of Pi causes the head to pivot and
move the filament (power stroke). Release of ADP
completes the cycle.
Length = 677
Score = 116 bits (292), Expect = 1e-30
Identities = 62/183 (33%), Positives = 90/183 (49%), Gaps = 53/183 (28%)
Query: 1 MRYFATVGGSQTETQVEKKVLAYSPIMEAIGNAKTIRNDNRSRFGKFTELHFNKHYNIIG 60
M+Y A++GG + +E ++L +PI+EA GNAKT RNDN
Sbjct: 113 MQYLASLGGG---SGIEYEILQTNPILEAFGNAKTSRNDN-------------------- 149
Query: 61 ASMRTCHFAIGNAKTIRNDNSSRFGKFTELHFNKHYNIIGASMRTYLLEKSRVVFQAPNE 120
SSRFGK E+HF++ I GA ++T+LLEKSRVV A E
Sbjct: 150 --------------------SSRFGKLIEIHFSETGKISGAKIQTFLLEKSRVVQCARGE 189
Query: 121 RNYHVFYQLCCA-----RDKYPYLLLDEPDSFQYIRE--CCEIPGVNDEEGFEETQQAFV 173
R+YH+FYQLC ++K L L ++Y+++ C I GV+D + F +A
Sbjct: 190 RSYHIFYQLCAGAPPALKEK---LNLKSASEYKYLKQSCCYSINGVDDAQRFHTLVEALD 246
Query: 174 TLG 176
+
Sbjct: 247 IVH 249
>gnl|CDD|240229 PTZ00014, PTZ00014, myosin-A; Provisional.
Length = 821
Score = 113 bits (285), Expect = 1e-29
Identities = 59/182 (32%), Positives = 93/182 (51%), Gaps = 49/182 (26%)
Query: 1 MRYFATVGGSQTETQVEKKVLAYSPIMEAIGNAKTIRNDNRSRFGKFTELHFNKHYNIIG 60
MRYFA+ + +++ ++A +P++EA GNAKTIRN+N
Sbjct: 204 MRYFASSKSGNMDLKIQNAIMAANPVLEAFGNAKTIRNNN-------------------- 243
Query: 61 ASMRTCHFAIGNAKTIRNDNSSRFGKFTELHFNKHYNIIGASMRTYLLEKSRVVFQAPNE 120
SSRFG+F +L + I S+ +LLEKSRVV Q +E
Sbjct: 244 --------------------SSRFGRFMQLQLGEEGGIRYGSIVAFLLEKSRVVTQEDDE 283
Query: 121 RNYHVFYQLCCA-----RDKYPYLLLDEPDSFQYI-RECCEIPGVNDEEGFEETQQAFVT 174
R+YH+FYQL ++KY L+E ++YI +C ++PG++D + FEE ++F +
Sbjct: 284 RSYHIFYQLLKGANDEMKEKYKLKSLEE---YKYINPKCLDVPGIDDVKDFEEVMESFDS 340
Query: 175 LG 176
+G
Sbjct: 341 MG 342
>gnl|CDD|238678 cd01382, MYSc_type_VI, Myosin motor domain, type VI myosins. Myosin
VI is a monomeric myosin, which moves towards the
minus-end of actin filaments, in contrast to most other
myosins. It has been implicated in endocytosis,
secretion, and cell migration. This catalytic (head)
domain has ATPase activity and belongs to the larger
group of P-loop NTPases. Myosins are actin-dependent
molecular motors that play important roles in muscle
contraction, cell motility, and organelle transport. The
head domain is a molecular motor, which utilizes ATP
hydrolysis to generate directed movement toward the
minus end along actin filaments. A cyclical interaction
between myosin and actin provides the driving force.
Rates of ATP hydrolysis and consequently the speed of
movement along actin filaments vary widely, from about
0.04 micrometer per second for myosin I to 4.5
micrometer per second for myosin II in skeletal muscle.
Myosin II moves in discrete steps about 5-10 nm long and
generates 1-5 piconewtons of force. Upon ATP binding,
the myosin head dissociates from an actin filament. ATP
hydrolysis causes the head to pivot and associate with a
new actin subunit. The release of Pi causes the head to
pivot and move the filament (power stroke). Release of
ADP completes the cycle.
Length = 717
Score = 111 bits (280), Expect = 5e-29
Identities = 46/88 (52%), Positives = 61/88 (69%), Gaps = 2/88 (2%)
Query: 69 AIGNAKTIRNDNSSRFGKFTELHFNKHYNIIGASMRTYLLEKSRVVFQAPNERNYHVFYQ 128
A GNAKT+RN+NSSRFGKF E+HFN+ +++G + YLLEKSR+ Q+ ERNYH+FY+
Sbjct: 138 AFGNAKTVRNNNSSRFGKFVEIHFNEKNSVVGGFVSHYLLEKSRICVQSAEERNYHIFYR 197
Query: 129 LCC--ARDKYPYLLLDEPDSFQYIRECC 154
LC + D L L PD F+Y+ C
Sbjct: 198 LCAGASEDIREKLHLSSPDDFRYLNRGC 225
>gnl|CDD|238683 cd01387, MYSc_type_XV, Myosin motor domain, type XV myosins. In
vertebrates, myosin XV appears to be expressed in
sensory tissue and play a role in hearing. This
catalytic (head) domain has ATPase activity and belongs
to the larger group of P-loop NTPases. Myosins are
actin-dependent molecular motors that play important
roles in muscle contraction, cell motility, and
organelle transport. The head domain is a molecular
motor, which utilizes ATP hydrolysis to generate
directed movement toward the plus end along actin
filaments. A cyclical interaction between myosin and
actin provides the driving force. Rates of ATP
hydrolysis and consequently the speed of movement along
actin filaments vary widely, from about 0.04 micrometer
per second for myosin I to 4.5 micrometer per second for
myosin II in skeletal muscle. Myosin II moves in
discrete steps about 5-10 nm long and generates 1-5
piconewtons of force. Upon ATP binding, the myosin head
dissociates from an actin filament. ATP hydrolysis
causes the head to pivot and associate with a new actin
subunit. The release of Pi causes the head to pivot and
move the filament (power stroke). Release of ADP
completes the cycle.
Length = 677
Score = 109 bits (273), Expect = 4e-28
Identities = 54/115 (46%), Positives = 69/115 (60%), Gaps = 11/115 (9%)
Query: 69 AIGNAKTIRNDNSSRFGKFTELHFNKHYNIIGASMRTYLLEKSRVVFQAPNERNYHVFYQ 128
A GNAKT+RNDNSSRFGKF E+ + I+GA YLLEKSR+VFQA NERNYH+FY+
Sbjct: 135 AFGNAKTVRNDNSSRFGKFVEIFL-EGGVIVGAITSQYLLEKSRIVFQAKNERNYHIFYE 193
Query: 129 LCCA-----RDKYPYLLLDEPDSFQYIRE--CCEIPGVNDEEGFEETQQAFVTLG 176
L R + L E +++ Y+ + CEI G +D + F A LG
Sbjct: 194 LLAGLPAQLRQAFS---LQEAETYYYLNQGGNCEIAGKSDADDFRRLLAAMEVLG 245
>gnl|CDD|238681 cd01385, MYSc_type_IX, Myosin motor domain, type IX myosins. Myosin
IX is a processive single-headed motor, which might play
a role in signalling. This catalytic (head) domain has
ATPase activity and belongs to the larger group of
P-loop NTPases. Myosins are actin-dependent molecular
motors that play important roles in muscle contraction,
cell motility, and organelle transport. The head domain
is a molecular motor, which utilizes ATP hydrolysis to
generate directed movement toward the plus end along
actin filaments. A cyclical interaction between myosin
and actin provides the driving force. Rates of ATP
hydrolysis and consequently the speed of movement along
actin filaments vary widely, from about 0.04 micrometer
per second for myosin I to 4.5 micrometer per second for
myosin II in skeletal muscle. Myosin II moves in
discrete steps about 5-10 nm long and generates 1-5
piconewtons of force. Upon ATP binding, the myosin head
dissociates from an actin filament. ATP hydrolysis
causes the head to pivot and associate with a new actin
subunit. The release of Pi causes the head to pivot and
move the filament (power stroke). Release of ADP
completes the cycle.
Length = 692
Score = 85.3 bits (211), Expect = 8e-20
Identities = 46/113 (40%), Positives = 66/113 (58%), Gaps = 6/113 (5%)
Query: 69 AIGNAKTIRNDNSSRFGKFTELHFNKHYNIIGASMRTYLLEKSRVVFQAPNERNYHVFYQ 128
A GNAKT N+NSSRFGKF ++++ ++ + GA + YLLEKSR+V Q +ERNYHVFY
Sbjct: 144 AFGNAKTAHNNNSSRFGKFIQVNYRENGMVRGAVVEKYLLEKSRIVSQEKDERNYHVFYY 203
Query: 129 LCCARD---KYPYLLLDEPDSFQYI--RECCEIPGVNDEEGFEETQQAFVTLG 176
L + LL +PD + Y+ G +++ FE +QA +G
Sbjct: 204 LLLGASEEERKQEFLLKQPD-YFYLNQHNLKIEDGEDEKHEFERLKQAMEMVG 255
>gnl|CDD|238675 cd01379, MYSc_type_III, Myosin motor domain, type III myosins.
Myosin III has been shown to play a role in the vision
process in insects and in hearing in mammals. Myosin
III, an unconventional myosin, does not form dimers.
This catalytic (head) domain has ATPase activity and
belongs to the larger group of P-loop NTPases. Myosins
are actin-dependent molecular motors that play important
roles in muscle contraction, cell motility, and
organelle transport. The head domain is a molecular
motor, which utilizes ATP hydrolysis to generate
directed movement toward the plus end along actin
filaments. A cyclical interaction between myosin and
actin provides the driving force. Rates of ATP
hydrolysis and consequently the speed of movement along
actin filaments vary widely, from about 0.04 micrometer
per second for myosin I to 4.5 micrometer per second for
myosin II in skeletal muscle. Myosin II moves in
discrete steps about 5-10 nm long and generates 1-5
piconewtons of force. Upon ATP binding, the myosin head
dissociates from an actin filament. ATP hydrolysis
causes the head to pivot and associate with a new actin
subunit. The release of Pi causes the head to pivot and
move the filament (power stroke). Release of ADP
completes the cycle.
Length = 653
Score = 80.6 bits (199), Expect = 3e-18
Identities = 34/59 (57%), Positives = 44/59 (74%)
Query: 69 AIGNAKTIRNDNSSRFGKFTELHFNKHYNIIGASMRTYLLEKSRVVFQAPNERNYHVFY 127
A GNA+T NDNSSRFGK+ E+ F + ++GA + YLLEKSRVV QA E+N+H+FY
Sbjct: 134 AFGNARTGINDNSSRFGKYLEMKFTRSGAVVGARISEYLLEKSRVVHQAEGEKNFHIFY 192
>gnl|CDD|238682 cd01386, MYSc_type_XVIII, Myosin motor domain, type XVIII myosins.
This catalytic (head) domain has ATPase activity and
belongs to the larger group of P-loop NTPases. Myosins
are actin-dependent molecular motors that play important
roles in muscle contraction, cell motility, and
organelle transport. The head domain is a molecular
motor, which utilizes ATP hydrolysis to generate
directed movement toward the plus end along actin
filaments. A cyclical interaction between myosin and
actin provides the driving force. Rates of ATP
hydrolysis and consequently the speed of movement along
actin filaments vary widely, from about 0.04 micrometer
per second for myosin I to 4.5 micrometer per second for
myosin II in skeletal muscle. Myosin II moves in
discrete steps about 5-10 nm long and generates 1-5
piconewtons of force. Upon ATP binding, the myosin head
dissociates from an actin filament. ATP hydrolysis
causes the head to pivot and associate with a new actin
subunit. The release of Pi causes the head to pivot and
move the filament (power stroke). Release of ADP
completes the cycle.
Length = 767
Score = 58.7 bits (142), Expect = 2e-10
Identities = 39/119 (32%), Positives = 51/119 (42%), Gaps = 17/119 (14%)
Query: 69 AIGNAKTIRNDNSSRFGKFTELHFNKHYNIIGASMRTYLLEKSRVVFQAPNERNYHVFYQ 128
A GN T N N++RF + L F++ I AS++T LLE+SRV + E N+ VF Q
Sbjct: 135 AFGNVSTALNGNATRFTQILSLDFDQTGQIASASLQTMLLERSRVARRPNGETNFVVFSQ 194
Query: 129 L--CCARDKYPYLLLD---EPDSFQYIRECCEIPGVNDEE------GFEETQQAFVTLG 176
L D L L+ E SF E+ F QQA LG
Sbjct: 195 LLAGVDGDLRTELHLEQMAESSSFGM------GGLSKPEDKQKAAIDFSRLQQAMEVLG 247
>gnl|CDD|238659 cd01363, Motor_domain, Myosin and Kinesin motor domain. These
ATPases belong to the P-loop NTPase family and provide
the driving force in myosin and kinesin mediated
processes.
Length = 186
Score = 32.9 bits (75), Expect = 0.054
Identities = 8/21 (38%), Positives = 11/21 (52%)
Query: 72 NAKTIRNDNSSRFGKFTELHF 92
A T N++SSR +HF
Sbjct: 71 TAATAMNEHSSRSHSVFRIHF 91
Score = 29.8 bits (67), Expect = 0.54
Identities = 7/21 (33%), Positives = 10/21 (47%)
Query: 32 NAKTIRNDNRSRFGKFTELHF 52
A T N++ SR +HF
Sbjct: 71 TAATAMNEHSSRSHSVFRIHF 91
>gnl|CDD|237422 PRK13548, hmuV, hemin importer ATP-binding subunit; Provisional.
Length = 258
Score = 28.6 bits (65), Expect = 1.8
Identities = 9/19 (47%), Positives = 10/19 (52%)
Query: 128 QLCCARDKYPYLLLDEPDS 146
QL +LLLDEP S
Sbjct: 151 QLWEPDGPPRWLLLDEPTS 169
>gnl|CDD|128744 smart00468, PreSET, N-terminal to some SET domains. A Cys-rich
putative Zn2+-binding domain that occurs N-terminal to
some SET domains. Function is unknown. Unpublished.
Length = 98
Score = 25.5 bits (56), Expect = 7.8
Identities = 7/19 (36%), Positives = 8/19 (42%)
Query: 142 DEPDSFQYIRECCEIPGVN 160
P F+YI E GV
Sbjct: 23 PPPPDFEYISEYIYGQGVP 41
>gnl|CDD|237572 PRK13962, PRK13962, bifunctional phosphoglycerate
kinase/triosephosphate isomerase; Provisional.
Length = 645
Score = 26.6 bits (59), Expect = 9.0
Identities = 11/24 (45%), Positives = 15/24 (62%), Gaps = 1/24 (4%)
Query: 12 TETQVEKKVLAYSPIMEAIGNAKT 35
+ QV+K V+AY P+ AIG K
Sbjct: 549 SAEQVKKVVIAYEPVW-AIGTGKV 571
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.322 0.136 0.410
Gapped
Lambda K H
0.267 0.0678 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 8,897,523
Number of extensions: 794754
Number of successful extensions: 685
Number of sequences better than 10.0: 1
Number of HSP's gapped: 665
Number of HSP's successfully gapped: 40
Length of query: 178
Length of database: 10,937,602
Length adjustment: 91
Effective length of query: 87
Effective length of database: 6,901,388
Effective search space: 600420756
Effective search space used: 600420756
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 56 (25.5 bits)