RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy15660
(178 letters)
>1w7j_A Myosin VA; motor protein, unconventional myosin, myosin V, chicken,
molecular motor, ATPase, ELC, IQ motif, muscle protein,
ATP-binding; HET: ADP; 2A {Gallus gallus} SCOP: b.34.3.1
c.37.1.9 PDB: 1w7i_A* 1oe9_A* 1w8j_A
Length = 795
Score = 205 bits (524), Expect = 1e-62
Identities = 81/180 (45%), Positives = 98/180 (54%), Gaps = 44/180 (24%)
Query: 1 MRYFATVGGSQTETQVEKKVLAYSPIMEAIGNAKTIRNDNRSRFGKFTELHFNKHYNIIG 60
MRYFATV GS +E VE+KVLA +PIME+IGNAKT RNDN
Sbjct: 177 MRYFATVSGSASEANVEEKVLASNPIMESIGNAKTTRNDN-------------------- 216
Query: 61 ASMRTCHFAIGNAKTIRNDNSSRFGKFTELHFNKHYNIIGASMRTYLLEKSRVVFQAPNE 120
SSRFGK+ E+ F+K Y IIGA+MRTYLLEKSRVVFQA E
Sbjct: 217 --------------------SSRFGKYIEIGFDKRYRIIGANMRTYLLEKSRVVFQAEEE 256
Query: 121 RNYHVFYQLCCARDK--YPYLLLDEPDSFQYIR--ECCEIPGVNDEEGFEETQQAFVTLG 176
RNYH+FYQLC + + L L + F Y + I G++D + T+QA LG
Sbjct: 257 RNYHIFYQLCASAALPEFKTLRLGNANYFHYTKQGGSPVIDGIDDAKEMVNTRQACTLLG 316
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp
contractIle protein-transport protein complex; 24.00A
{Gallus gallus}
Length = 1080
Score = 203 bits (517), Expect = 5e-61
Identities = 81/180 (45%), Positives = 98/180 (54%), Gaps = 44/180 (24%)
Query: 1 MRYFATVGGSQTETQVEKKVLAYSPIMEAIGNAKTIRNDNRSRFGKFTELHFNKHYNIIG 60
MRYFATV GS +E VE+KVLA +PIME+IGNAKT RNDN
Sbjct: 177 MRYFATVSGSASEANVEEKVLASNPIMESIGNAKTTRNDN-------------------- 216
Query: 61 ASMRTCHFAIGNAKTIRNDNSSRFGKFTELHFNKHYNIIGASMRTYLLEKSRVVFQAPNE 120
SSRFGK+ E+ F+K Y IIGA+MRTYLLEKSRVVFQA E
Sbjct: 217 --------------------SSRFGKYIEIGFDKRYRIIGANMRTYLLEKSRVVFQAEEE 256
Query: 121 RNYHVFYQLCCARDK--YPYLLLDEPDSFQYIR--ECCEIPGVNDEEGFEETQQAFVTLG 176
RNYH+FYQLC + + L L + F Y + I G++D + T+QA LG
Sbjct: 257 RNYHIFYQLCASAALPEFKTLRLGNANYFHYTKQGGSPVIDGIDDAKEMVNTRQACTLLG 316
>1lkx_A Myosin IE heavy chain; myosin motor domain, lever ARM, converter
domain, contractIle protein; HET: ADP; 3.00A
{Dictyostelium discoideum} SCOP: c.37.1.9
Length = 697
Score = 196 bits (500), Expect = 9e-60
Identities = 52/183 (28%), Positives = 83/183 (45%), Gaps = 47/183 (25%)
Query: 1 MRYFATVGGSQTET--QVEKKVLAYSPIMEAIGNAKTIRNDNRSRFGKFTELHFNKHYNI 58
M++ V +Q+ ++ K +L +P++EA GNAKT+RNDN
Sbjct: 115 MQFLTFVSSNQSPNGERISKMLLDSNPLLEAFGNAKTLRNDN------------------ 156
Query: 59 IGASMRTCHFAIGNAKTIRNDNSSRFGKFTELHFNKHYNIIGASMRTYLLEKSRVVFQAP 118
SSRFGK+ E+ FN + IG + YLLEKSRVV +
Sbjct: 157 ----------------------SSRFGKYMEMQFNAVGSPIGGKITNYLLEKSRVVGRTQ 194
Query: 119 NERNYHVFYQLCCARD---KYPYLLLDEPDSFQYIR--ECCEIPGVNDEEGFEETQQAFV 173
ER++H+FYQ+ L +++Y++ C ++ ++D F+ +A
Sbjct: 195 GERSFHIFYQMLKGLSQSKLDELGLTPNAPAYEYLKKSGCFDVSTIDDSGEFKIIVKAME 254
Query: 174 TLG 176
TLG
Sbjct: 255 TLG 257
>1w9i_A Myosin II heavy chain; molecular motor, ATPase, motor domain,
mutant, muscle contraction; HET: ADP; 1.75A
{Dictyostelium discoideum} PDB: 1w9j_A* 1w9l_A* 1w9k_A*
1mma_A* 2aka_A 1d0x_A* 1d0y_A* 1d0z_A* 1d1a_A* 1d1b_A*
1d1c_A* 2xel_A* 1yv3_A* 3bz7_A* 3bz8_A* 3bz9_A* 1jwy_A*
1jx2_A* 3mjx_A* 2jhr_A* ...
Length = 770
Score = 196 bits (500), Expect = 2e-59
Identities = 69/183 (37%), Positives = 94/183 (51%), Gaps = 47/183 (25%)
Query: 1 MRYFATVGG---SQTETQVEKKVLAYSPIMEAIGNAKTIRNDNRSRFGKFTELHFNKHYN 57
++Y A+V G + +E+++L +PI+EA GNAKT RN+N
Sbjct: 193 IQYLASVAGRNQANGSGVLEQQILQANPILEAFGNAKTTRNNN----------------- 235
Query: 58 IIGASMRTCHFAIGNAKTIRNDNSSRFGKFTELHFNKHYNIIGASMRTYLLEKSRVVFQA 117
SSRFGKF E+ FN I GAS+++YLLEKSRVVFQ+
Sbjct: 236 -----------------------SSRFGKFIEIQFNSAGFISGASIQSYLLEKSRVVFQS 272
Query: 118 PNERNYHVFYQLCCARDK--YPYLLLDEPDSFQYIRE--CCEIPGVNDEEGFEETQQAFV 173
ERNYH+FYQL L L P+SF Y+ + C +I GV+D E F+ T+QA
Sbjct: 273 ETERNYHIFYQLLAGATAEEKKALHLAGPESFNYLNQSGCVDIKGVSDSEEFKITRQAMD 332
Query: 174 TLG 176
+G
Sbjct: 333 IVG 335
>4db1_A Myosin-7; S1DC, cardiac, beta isoform, MYH7, myhcb, MYHC-beta,
contractIle protein; HET: ANP; 2.60A {Homo sapiens} PDB:
2w4a_M 2w4g_M 2w4h_M 2mys_A* 1m8q_A* 1mvw_A* 1o18_A*
1o19_A* 1o1a_A* 1o1b_A* 1o1c_A* 1o1d_A* 1o1e_A* 1o1f_A*
1o1g_A*
Length = 783
Score = 195 bits (498), Expect = 4e-59
Identities = 54/189 (28%), Positives = 82/189 (43%), Gaps = 53/189 (28%)
Query: 1 MRYFATVGGSQTETQ---------VEKKVLAYSPIMEAIGNAKTIRNDNRSRFGKFTELH 51
++YFA + ++ +E +++ +P +EA GNAKT+RNDN
Sbjct: 192 IQYFAVIAAIGDRSKKDQSPGKGTLEDQIIQANPALEAFGNAKTVRNDN----------- 240
Query: 52 FNKHYNIIGASMRTCHFAIGNAKTIRNDNSSRFGKFTELHFNKHYNIIGASMRTYLLEKS 111
SSRFGKF +HF + A + TYLLEKS
Sbjct: 241 -----------------------------SSRFGKFIRIHFGATGKLASADIETYLLEKS 271
Query: 112 RVVFQAPNERNYHVFYQLCCARD---KYPYLLLDEPDSFQYIRE-CCEIPGVNDEEGFEE 167
RV+FQ ER+YH+FYQ+ + L+ + P + +I + + ++D E
Sbjct: 272 RVIFQLKAERDYHIFYQILSNKKPELLDMLLITNNPYDYAFISQGETTVASIDDAEELMA 331
Query: 168 TQQAFVTLG 176
T AF LG
Sbjct: 332 TDNAFDVLG 340
>1g8x_A Myosin II heavy chain fused to alpha-actinin 3; motor, lever ARM,
protein engineering, structural protein; HET: ADP; 2.80A
{Dictyostelium discoideum} SCOP: k.1.1.1
Length = 1010
Score = 196 bits (500), Expect = 7e-59
Identities = 68/183 (37%), Positives = 94/183 (51%), Gaps = 47/183 (25%)
Query: 1 MRYFATVGG---SQTETQVEKKVLAYSPIMEAIGNAKTIRNDNRSRFGKFTELHFNKHYN 57
++Y A+V G + +E+++L +PI+EA GNAKT RN+N
Sbjct: 193 IQYLASVAGRNQANGSGVLEQQILQANPILEAFGNAKTTRNNN----------------- 235
Query: 58 IIGASMRTCHFAIGNAKTIRNDNSSRFGKFTELHFNKHYNIIGASMRTYLLEKSRVVFQA 117
SS FGKF E+ FN I GAS+++YLLEKSRVVFQ+
Sbjct: 236 -----------------------SSEFGKFIEIQFNNAGFISGASIQSYLLEKSRVVFQS 272
Query: 118 PNERNYHVFYQLCCARDK--YPYLLLDEPDSFQYIRE--CCEIPGVNDEEGFEETQQAFV 173
ERNYH+FYQL L L P+SF Y+ + C +I GV+DE+ F+ T+QA
Sbjct: 273 ETERNYHIFYQLLAGATAEEKKALHLAGPESFNYLNQSGCVDIKGVSDEDEFKITRQAMD 332
Query: 174 TLG 176
+G
Sbjct: 333 IVG 335
>2ycu_A Non muscle myosin 2C, alpha-actinin; motor protein; HET: AOV; 2.25A
{Homo sapiens} PDB: 1br1_A* 1br4_A* 1br2_A*
Length = 995
Score = 194 bits (496), Expect = 3e-58
Identities = 54/185 (29%), Positives = 86/185 (46%), Gaps = 49/185 (26%)
Query: 1 MRYFATVGGSQ-------TETQVEKKVLAYSPIMEAIGNAKTIRNDNRSRFGKFTELHFN 53
++Y A V S ++E+++L +PI+EA GNAKT++NDN
Sbjct: 167 IQYLAHVASSPKGRKEPGVPGELERQLLQANPILEAFGNAKTVKNDN------------- 213
Query: 54 KHYNIIGASMRTCHFAIGNAKTIRNDNSSRFGKFTELHFNKHYNIIGASMRTYLLEKSRV 113
SSRFGKF ++F+ I+GA++ TYLLEKSR
Sbjct: 214 ---------------------------SSRFGKFIRINFDVAGYIVGANIETYLLEKSRA 246
Query: 114 VFQAPNERNYHVFYQLCCARDK--YPYLLLDEPDSFQYIRECCEIPGVNDEEGFEETQQA 171
+ QA +E ++H+FYQL + LLL+ ++++ + E F+ET ++
Sbjct: 247 IRQAKDECSFHIFYQLLGGAGEQLKADLLLEPCSHYRFLTNGPSSSPGQERELFQETLES 306
Query: 172 FVTLG 176
LG
Sbjct: 307 LRVLG 311
>1kk8_A Myosin heavy chain, striated muscle; actin-detached, mechanics of
motor, contractIle PROT; HET: ADP; 2.30A {Argopecten
irradians} SCOP: b.34.3.1 c.37.1.9 PDB: 1kk7_A* 1qvi_A*
1s5g_A* 1sr6_A 1b7t_A* 1kqm_A* 1kwo_A* 1l2o_A* 1dfl_A*
2w4t_C 2w4v_C 2w4w_C 1dfk_A 2ec6_A 2otg_A* 2os8_A*
2ovk_A 2ekv_A 2ekw_A 2oy6_A* ...
Length = 837
Score = 190 bits (484), Expect = 5e-57
Identities = 57/190 (30%), Positives = 82/190 (43%), Gaps = 54/190 (28%)
Query: 1 MRYFATVGGSQT----------ETQVEKKVLAYSPIMEAIGNAKTIRNDNRSRFGKFTEL 50
+ Y A V + E +E +++ +P++EA GNAKT RN+N
Sbjct: 190 IMYLAKVACAVKKKDEEASDKKEGSLEDQIIQANPVLEAYGNAKTTRNNN---------- 239
Query: 51 HFNKHYNIIGASMRTCHFAIGNAKTIRNDNSSRFGKFTELHFNKHYNIIGASMRTYLLEK 110
SSRFGKF +HF I GA + TYLLEK
Sbjct: 240 ------------------------------SSRFGKFIRIHFGPTGKIAGADIETYLLEK 269
Query: 111 SRVVFQAPNERNYHVFYQLCCARD---KYPYLLLDEPDSFQYIRE-CCEIPGVNDEEGFE 166
SRV +Q ERNYH+FYQ+C L+ + + +I + C + ++D E F+
Sbjct: 270 SRVTYQQSAERNYHIFYQICSNAIPELNDVMLVTPDSGLYSFINQGCLTVDNIDDVEEFK 329
Query: 167 ETQQAFVTLG 176
+AF LG
Sbjct: 330 LCDEAFDILG 339
>2v26_A Myosin VI; calmodulin-binding, nucleotide-binding, membrane,
vanadate, transport, PRE- powerstroke, transition state,
protein transport; HET: ADP; 1.75A {Sus scrofa} PDB:
2bki_A 2bkh_A 3l9i_A 2x51_A 2vb6_A* 2vas_A*
Length = 784
Score = 186 bits (474), Expect = 1e-55
Identities = 54/206 (26%), Positives = 84/206 (40%), Gaps = 72/206 (34%)
Query: 1 MRYFATVGGSQTETQVEKKVLAYSPIMEAIGNAKTIRNDNRSRFGKFTELHFNKHYNIIG 60
+RY G+ + ++ +++ +P++EA GNAKT+RN+N
Sbjct: 161 LRYLTESYGTGQD--IDDRIVEANPLLEAFGNAKTVRNNN-------------------- 198
Query: 61 ASMRTCHFAIGNAKTIRNDNSSRFGKFTELHFNKHYNIIGASMRTYLLEKSRVVFQAPNE 120
SSRFGKF E+HFN+ +++G + YLLEKSR+ Q E
Sbjct: 199 --------------------SSRFGKFVEIHFNEKSSVVGGFVSHYLLEKSRICVQGKEE 238
Query: 121 RNYHVFYQLCCARDK--YPYLLLDEPDSFQYI---------------------------- 150
RNYH+FY+LC + L L PD+F+Y+
Sbjct: 239 RNYHIFYRLCAGASEDIRERLHLSSPDNFRYLNRGCTRYFANKETDKQILQNRKSPEYLK 298
Query: 151 RECCEIPGVNDEEGFEETQQAFVTLG 176
+ P ++D F A +G
Sbjct: 299 AGSLKDPLLDDHGDFIRMCTAMKKIG 324
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin
subfragment 2, heavy meromyosin, essential light chain,
motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP:
i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A
Length = 1184
Score = 168 bits (426), Expect = 8e-49
Identities = 58/193 (30%), Positives = 90/193 (46%), Gaps = 57/193 (29%)
Query: 1 MRYFATVGGS--------------QTETQVEKKVLAYSPIMEAIGNAKTIRNDNRSRFGK 46
++Y A V S + ++EK++L +PI+EA GNAKT++NDN
Sbjct: 190 IQYLAVVASSHKGKKDTSITQGPSFSYGELEKQLLQANPILEAFGNAKTVKNDN------ 243
Query: 47 FTELHFNKHYNIIGASMRTCHFAIGNAKTIRNDNSSRFGKFTELHFNKHYNIIGASMRTY 106
SSRFGKF ++F+ I+GA++ TY
Sbjct: 244 ----------------------------------SSRFGKFIRINFDVTGYIVGANIETY 269
Query: 107 LLEKSRVVFQAPNERNYHVFYQLCCARDK--YPYLLLDEPDSFQYIRE-CCEIPGVNDEE 163
LLEKSR + QA +ER +H+FY L + LLL+ +++ ++ IP D+E
Sbjct: 270 LLEKSRAIRQAKDERTFHIFYYLIAGASEQMRNDLLLEGFNNYTFLSNGHVPIPAQQDDE 329
Query: 164 GFEETQQAFVTLG 176
F+ET +A +G
Sbjct: 330 MFQETLEAMTIMG 342
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 30.6 bits (68), Expect = 0.28
Identities = 24/184 (13%), Positives = 47/184 (25%), Gaps = 78/184 (42%)
Query: 33 AKTIRNDNRSRFGKFTELHFNKHYNIIGAS--------MRTCH--FAI------------ 70
A++IR D + + + ++ +K II +S R ++
Sbjct: 334 AESIR-DGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHIPTILL 392
Query: 71 ----GNAKTI----------------RNDNSSRFG-------------KFTELH--FNKH 95
+ + S LH H
Sbjct: 393 SLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSIYLELKVKLENEYALHRSIVDH 452
Query: 96 YNIIGASMRTYLLEKSRVVFQAPNERNY---HVFYQLCCAR-----DKYPYLLLDEPDSF 147
YNI +T+ + P Y H+ + L + + LD F
Sbjct: 453 YNIP----KTFDSDD----LIPPYLDQYFYSHIGHHLKNIEHPERMTLFRMVFLD----F 500
Query: 148 QYIR 151
+++
Sbjct: 501 RFLE 504
Score = 27.1 bits (59), Expect = 4.6
Identities = 10/79 (12%), Positives = 27/79 (34%), Gaps = 5/79 (6%)
Query: 75 TIRNDNSSRFGKFTELHFNKHYNIIGASMRTYLLEKSRVVFQAPNERNYHVFYQLCCARD 134
T+ + KF E +Y + + ++T + S + +R+ +L
Sbjct: 70 TLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRD-----RLYNDNQ 124
Query: 135 KYPYLLLDEPDSFQYIREC 153
+ + + +R+
Sbjct: 125 VFAKYNVSRLQPYLKLRQA 143
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 30.0 bits (67), Expect = 0.51
Identities = 20/131 (15%), Positives = 38/131 (29%), Gaps = 49/131 (37%)
Query: 73 AKTIRNDNSSRFGKFTEL---HFNKHY----NI--IGASM----RTYLLEKSRVVFQAPN 119
+ + +F + L F Y +I + A + T L++ ++
Sbjct: 69 SSLVEPSKVGQFDQVLNLCLTEFENCYLEGNDIHALAAKLLQENDTTLVKTKELI----- 123
Query: 120 ERNYHVFYQLCCARDKYPY------LLLDEPDS--------F--QYIRECCEIPGVNDEE 163
+NY + P+ L F Q G N ++
Sbjct: 124 -KNY---ITARIMAKR-PFDKKSNSALFRAVGEGNAQLVAIFGGQ---------G-NTDD 168
Query: 164 GFEETQQAFVT 174
FEE + + T
Sbjct: 169 YFEELRDLYQT 179
>3pm2_A Odorant binding protein (AGAP007287-PA); alpha helical protein,
odorant MOLE antennae, transport protein; 1.80A
{Anopheles gambiae}
Length = 173
Score = 28.7 bits (63), Expect = 0.82
Identities = 6/30 (20%), Positives = 11/30 (36%)
Query: 144 PDSFQYIRECCEIPGVNDEEGFEETQQAFV 173
P + ECC P + + F ++
Sbjct: 9 PPVPKNAAECCVTPFLVEPSAFMTCHSKWI 38
>2ql3_A Probable transcriptional regulator, LYSR family P; APC7314,
rhodococcus RHA1, structural genomics, PSI-2; HET: MSE;
2.05A {Rhodococcus SP}
Length = 209
Score = 28.4 bits (64), Expect = 1.1
Identities = 14/44 (31%), Positives = 19/44 (43%), Gaps = 4/44 (9%)
Query: 137 PYLLLDEPDSFQYIRECCEIPGVNDEEGFE----ETQQAFVTLG 176
P +LLD P S + + C G + ET +AFV G
Sbjct: 105 PMVLLDAPPSTNHAMDVCREAGFAPRVAYRTANFETARAFVGRG 148
>4awd_A Beta-porphyranase; hydrolase; 2.40A {Bacteroides plebeius}
Length = 324
Score = 28.1 bits (62), Expect = 1.5
Identities = 9/62 (14%), Positives = 20/62 (32%)
Query: 26 IMEAIGNAKTIRNDNRSRFGKFTELHFNKHYNIIGASMRTCHFAIGNAKTIRNDNSSRFG 85
I+E +G +++ DN +++ N HY + + +
Sbjct: 179 IIETMGIIRSVNPDNPWNKTWNMQMNSNTHYWYQEQGGKRTDNTAKRSDVVSYMTDPSAE 238
Query: 86 KF 87
F
Sbjct: 239 DF 240
>1ney_A TIM, triosephosphate isomerase; yeast, DHAP, dihydroxyacetone
phosphate, michaelis complex; HET: FTR 13P; 1.20A
{Saccharomyces cerevisiae} SCOP: c.1.1.1 PDB: 1nf0_A*
1i45_A* 1ypi_A 2ypi_A 7tim_A* 3ypi_A*
Length = 247
Score = 25.7 bits (57), Expect = 8.5
Identities = 12/72 (16%), Positives = 17/72 (23%), Gaps = 15/72 (20%)
Query: 14 TQVEKKVLAYSPIMEAIGNAKTIRNDNRSRFGKFTELHFNKHYN---------IIGASMR 64
V+AY P+ AIG ++ + G S
Sbjct: 154 KDFTNVVVAYEPV-XAIGTGLAATPEDAQDIHASIRKFLASKLGDKAASELRILYGGSAN 212
Query: 65 TCHFAIGNAKTI 76
NA T
Sbjct: 213 G-----SNAVTF 219
>2jon_A Beta-1,3-glucanase; olive pollen, allergen; NMR {Olea europaea}
Length = 101
Score = 24.8 bits (54), Expect = 9.0
Identities = 7/31 (22%), Positives = 11/31 (35%), Gaps = 1/31 (3%)
Query: 52 FNKHYNIIGASMRTCHFAIGNAKTIRNDNSS 82
N +Y G + C F+ A + S
Sbjct: 62 MNLYYQHAGRNSWNCDFS-QTATLTNTNPSY 91
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.322 0.136 0.410
Gapped
Lambda K H
0.267 0.0751 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 2,667,853
Number of extensions: 145351
Number of successful extensions: 334
Number of sequences better than 10.0: 1
Number of HSP's gapped: 311
Number of HSP's successfully gapped: 39
Length of query: 178
Length of database: 6,701,793
Length adjustment: 87
Effective length of query: 91
Effective length of database: 4,272,666
Effective search space: 388812606
Effective search space used: 388812606
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 54 (24.5 bits)