RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy15660
(178 letters)
>d2mysa2 c.37.1.9 (A:4-33,A:80-843) Myosin S1, motor domain {Chicken
(Gallus gallus), pectoral muscle [TaxId: 9031]}
Length = 794
Score = 114 bits (286), Expect = 1e-30
Identities = 58/180 (32%), Positives = 83/180 (46%), Gaps = 34/180 (18%)
Query: 1 MRYFATVGGSQTETQVEKKVLAYSPIMEAIGNAKTIRNDNRSRFGKFTELHFNKHYNIIG 60
++YFAT+ S + + E+ + + I +A +
Sbjct: 144 IQYFATIAASGEKKKEEQSGKMQGTLEDQIISANPLLE---------------------- 181
Query: 61 ASMRTCHFAIGNAKTIRNDNSSRFGKFTELHFNKHYNIIGASMRTYLLEKSRVVFQAPNE 120
A GNAKT+RNDNSSRFGKF +HF + A + TYLLEKSRV FQ P E
Sbjct: 182 --------AFGNAKTVRNDNSSRFGKFIRIHFGATGKLASADIETYLLEKSRVTFQLPAE 233
Query: 121 RNYHVFYQLCCARD---KYPYLLLDEPDSFQYIRE-CCEIPGVNDEEGFEETQQAFVTLG 176
R+YH+FYQ+ + L+ P + Y+ E +P ++D+E T A LG
Sbjct: 234 RSYHIFYQIMSNKKPELIDMLLITTNPYDYHYVSEGEITVPSIDDQEELMATDSAIDILG 293
>d1w7ja2 c.37.1.9 (A:63-792) Myosin S1, motor domain {Chicken
(Gallus gallus), Va isoform [TaxId: 9031]}
Length = 730
Score = 113 bits (283), Expect = 3e-30
Identities = 82/180 (45%), Positives = 100/180 (55%), Gaps = 44/180 (24%)
Query: 1 MRYFATVGGSQTETQVEKKVLAYSPIMEAIGNAKTIRNDNRSRFGKFTELHFNKHYNIIG 60
MRYFATV GS +E VE+KVLA +PIME+IGNAKT RND
Sbjct: 115 MRYFATVSGSASEANVEEKVLASNPIMESIGNAKTTRND--------------------- 153
Query: 61 ASMRTCHFAIGNAKTIRNDNSSRFGKFTELHFNKHYNIIGASMRTYLLEKSRVVFQAPNE 120
NSSRFGK+ E+ F+K Y IIGA+MRTYLLEKSRVVFQA E
Sbjct: 154 -------------------NSSRFGKYIEIGFDKRYRIIGANMRTYLLEKSRVVFQAEEE 194
Query: 121 RNYHVFYQLC--CARDKYPYLLLDEPDSFQYIRE--CCEIPGVNDEEGFEETQQAFVTLG 176
RNYH+FYQLC A ++ L L + F Y ++ I G++D + T+QA LG
Sbjct: 195 RNYHIFYQLCASAALPEFKTLRLGNANYFHYTKQGGSPVIDGIDDAKEMVNTRQACTLLG 254
>d1br2a2 c.37.1.9 (A:80-789) Myosin S1, motor domain {Chicken
(Gallus gallus), pectoral muscle [TaxId: 9031]}
Length = 710
Score = 109 bits (274), Expect = 6e-29
Identities = 48/111 (43%), Positives = 71/111 (63%), Gaps = 3/111 (2%)
Query: 69 AIGNAKTIRNDNSSRFGKFTELHFNKHYNIIGASMRTYLLEKSRVVFQAPNERNYHVFYQ 128
A GNAKT++NDNSSRFGKF ++F+ I+GA++ TYLLEKSR + QA +ER +H+FY
Sbjct: 154 AFGNAKTVKNDNSSRFGKFIRINFDVTGYIVGANIETYLLEKSRAIRQAKDERTFHIFYY 213
Query: 129 LCCARDKY--PYLLLDEPDSFQYIR-ECCEIPGVNDEEGFEETQQAFVTLG 176
L + LLL+ +++ ++ IP D+E F+ET +A +G
Sbjct: 214 LIAGASEQMRNDLLLEGFNNYTFLSNGHVPIPAQQDDEMFQETLEAMTIMG 264
>d1kk8a2 c.37.1.9 (A:1-28,A:77-837) Myosin S1, motor domain {Bay
scallop (Aequipecten irradians) [TaxId: 31199]}
Length = 789
Score = 107 bits (269), Expect = 3e-28
Identities = 55/180 (30%), Positives = 78/180 (43%), Gaps = 34/180 (18%)
Query: 1 MRYFATVGGSQTETQVEKKVLAYSPIMEAIGNAKTIRNDNRSRFGKFTELHFNKHYNIIG 60
+ Y A V + + E + + I A +
Sbjct: 142 IMYLAKVACAVKKKDEEASDKKEGSLEDQIIQANPVLE---------------------- 179
Query: 61 ASMRTCHFAIGNAKTIRNDNSSRFGKFTELHFNKHYNIIGASMRTYLLEKSRVVFQAPNE 120
+ GNAKT RN+NSSRFGKF +HF I GA + TYLLEKSRV +Q E
Sbjct: 180 ------AY--GNAKTTRNNNSSRFGKFIRIHFGPTGKIAGADIETYLLEKSRVTYQQSAE 231
Query: 121 RNYHVFYQLCCARD---KYPYLLLDEPDSFQYIRE-CCEIPGVNDEEGFEETQQAFVTLG 176
RNYH+FYQ+C L+ + + +I + C + ++D E F+ +AF LG
Sbjct: 232 RNYHIFYQICSNAIPELNDVMLVTPDSGLYSFINQGCLTVDNIDDVEEFKLCDEAFDILG 291
>d1lkxa_ c.37.1.9 (A:) Myosin S1, motor domain {Dictyostelium
discoideum, class-I myosin MyoE [TaxId: 44689]}
Length = 684
Score = 107 bits (268), Expect = 4e-28
Identities = 52/183 (28%), Positives = 83/183 (45%), Gaps = 47/183 (25%)
Query: 1 MRYFATVGGSQTET--QVEKKVLAYSPIMEAIGNAKTIRNDNRSRFGKFTELHFNKHYNI 58
M++ V +Q+ ++ K +L +P++EA GNAKT+RND
Sbjct: 107 MQFLTFVSSNQSPNGERISKMLLDSNPLLEAFGNAKTLRND------------------- 147
Query: 59 IGASMRTCHFAIGNAKTIRNDNSSRFGKFTELHFNKHYNIIGASMRTYLLEKSRVVFQAP 118
NSSRFGK+ E+ FN + IG + YLLEKSRVV +
Sbjct: 148 ---------------------NSSRFGKYMEMQFNAVGSPIGGKITNYLLEKSRVVGRTQ 186
Query: 119 NERNYHVFYQLCCARD---KYPYLLLDEPDSFQYIR--ECCEIPGVNDEEGFEETQQAFV 173
ER++H+FYQ+ L +++Y++ C ++ ++D F+ +A
Sbjct: 187 GERSFHIFYQMLKGLSQSKLDELGLTPNAPAYEYLKKSGCFDVSTIDDSGEFKIIVKAME 246
Query: 174 TLG 176
TLG
Sbjct: 247 TLG 249
>d1d0xa2 c.37.1.9 (A:2-33,A:80-759) Myosin S1, motor domain
{Dictyostelium discoideum [TaxId: 44689]}
Length = 712
Score = 102 bits (256), Expect = 1e-26
Identities = 69/183 (37%), Positives = 93/183 (50%), Gaps = 47/183 (25%)
Query: 1 MRYFATVGGSQ---TETQVEKKVLAYSPIMEAIGNAKTIRNDNRSRFGKFTELHFNKHYN 57
++Y A+V G +E+++L +PI+EA GNAKT
Sbjct: 146 IQYLASVAGRNQANGSGVLEQQILQANPILEAFGNAKTT--------------------- 184
Query: 58 IIGASMRTCHFAIGNAKTIRNDNSSRFGKFTELHFNKHYNIIGASMRTYLLEKSRVVFQA 117
RN+NSSRFGKF E+ FN I GAS+++YLLEKSRVVFQ+
Sbjct: 185 -------------------RNNNSSRFGKFIEIQFNNAGFISGASIQSYLLEKSRVVFQS 225
Query: 118 PNERNYHVFYQLCCARDK--YPYLLLDEPDSFQYIRE--CCEIPGVNDEEGFEETQQAFV 173
ERNYH+FYQL L L P+SF Y+ + C +I GV+D E F+ T+QA
Sbjct: 226 ETERNYHIFYQLLAGATAEEKKALHLAGPESFNYLNQSGCVDIKGVSDSEEFKITRQAMD 285
Query: 174 TLG 176
+G
Sbjct: 286 IVG 288
>d2j0pa1 e.62.1.1 (A:4-341) Hemin transport protein HemS {Yersinia
enterocolitica [TaxId: 630]}
Length = 338
Score = 25.9 bits (57), Expect = 3.4
Identities = 12/36 (33%), Positives = 18/36 (50%), Gaps = 3/36 (8%)
Query: 27 MEAIGNAKTI-RNDN--RSRFGKFTELHFNKHYNII 59
+EA+G K I RN + G++ H N H +I
Sbjct: 55 LEAVGEVKAITRNTYAVHEQMGRYENQHLNGHAGLI 90
Score = 25.1 bits (55), Expect = 5.0
Identities = 11/34 (32%), Positives = 17/34 (50%), Gaps = 3/34 (8%)
Query: 69 AIGNAKTI-RNDNS--SRFGKFTELHFNKHYNII 99
A+G K I RN + + G++ H N H +I
Sbjct: 57 AVGEVKAITRNTYAVHEQMGRYENQHLNGHAGLI 90
>d2hq2a1 e.62.1.1 (A:1-337) Heme oxygenase ChuS {Escherichia coli
O157:H7 [TaxId: 83334]}
Length = 337
Score = 25.5 bits (56), Expect = 4.6
Identities = 13/36 (36%), Positives = 19/36 (52%), Gaps = 3/36 (8%)
Query: 27 MEAIGNAKTI-RNDN--RSRFGKFTELHFNKHYNII 59
+E++G K I RN+ + G FT H N H +I
Sbjct: 56 LESVGETKCICRNEYAVHEQVGTFTNQHLNGHAGLI 91
Score = 24.7 bits (54), Expect = 6.3
Identities = 12/34 (35%), Positives = 18/34 (52%), Gaps = 3/34 (8%)
Query: 69 AIGNAKTI-RNDNS--SRFGKFTELHFNKHYNII 99
++G K I RN+ + + G FT H N H +I
Sbjct: 58 SVGETKCICRNEYAVHEQVGTFTNQHLNGHAGLI 91
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.322 0.136 0.410
Gapped
Lambda K H
0.267 0.0521 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 658,190
Number of extensions: 29535
Number of successful extensions: 94
Number of sequences better than 10.0: 1
Number of HSP's gapped: 87
Number of HSP's successfully gapped: 17
Length of query: 178
Length of database: 2,407,596
Length adjustment: 80
Effective length of query: 98
Effective length of database: 1,309,196
Effective search space: 128301208
Effective search space used: 128301208
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 50 (23.5 bits)