BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy15661
(217 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1J03|A Chain A, Solution Structure Of A Putative Steroid-Binding Protein
From Arabidopsis
Length = 102
Score = 57.8 bits (138), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 29/97 (29%), Positives = 53/97 (54%), Gaps = 3/97 (3%)
Query: 2 FSKEEIAKYVTEDK---LYLVILGHVFDVTKGKNYYKKGETYHCFVGRDGTRAFVSGNFT 58
F+ E++++Y D+ +Y+ I G VFDVT GK++Y G Y F G+D +RA +
Sbjct: 5 FTAEQLSQYNGTDESKPIYVAIKGRVFDVTTGKSFYGSGGDYSMFAGKDASRALGKMSKN 64
Query: 59 DEGLTEDIDDISGTEAIELNNWLDFYRTNYVYEGHLI 95
+E ++ ++ ++ E LN+W + Y G ++
Sbjct: 65 EEDVSPSLEGLTEKEINTLNDWETKFEAKYPVVGRVV 101
>pdb|1T0G|A Chain A, Hypothetical Protein At2g24940.1 From Arabidopsis Thaliana
Has A Cytochrome B5 Like Fold
Length = 109
Score = 57.4 bits (137), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 29/97 (29%), Positives = 53/97 (54%), Gaps = 3/97 (3%)
Query: 2 FSKEEIAKYVTEDK---LYLVILGHVFDVTKGKNYYKKGETYHCFVGRDGTRAFVSGNFT 58
F+ E++++Y D+ +Y+ I G VFDVT GK++Y G Y F G+D +RA +
Sbjct: 12 FTAEQLSQYNGTDESKPIYVAIKGRVFDVTTGKSFYGSGGDYSMFAGKDASRALGKMSKN 71
Query: 59 DEGLTEDIDDISGTEAIELNNWLDFYRTNYVYEGHLI 95
+E ++ ++ ++ E LN+W + Y G ++
Sbjct: 72 EEDVSPSLEGLTEKEINTLNDWETKFEAKYPVVGRVV 108
>pdb|2I89|A Chain A, Structure Of Septuple Mutant Of Rat Outer Mitochondrial
Membrane Cytochrome B5
pdb|2I89|B Chain B, Structure Of Septuple Mutant Of Rat Outer Mitochondrial
Membrane Cytochrome B5
pdb|2I89|C Chain C, Structure Of Septuple Mutant Of Rat Outer Mitochondrial
Membrane Cytochrome B5
pdb|2I89|D Chain D, Structure Of Septuple Mutant Of Rat Outer Mitochondrial
Membrane Cytochrome B5
Length = 93
Score = 32.0 bits (71), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 20/66 (30%), Positives = 37/66 (56%), Gaps = 4/66 (6%)
Query: 5 EEIAKYVTEDKLYLVILGHVFDVTKGKNYYKKGETYHCFVGRDGTRAFVSGNFTDEGLTE 64
EE+AK+ T + ++V+ G V+D+T+ + + GE V R+ A + +F D G +
Sbjct: 16 EEVAKHNTSESTWMVLHGRVYDLTRFLSEHPGGEE----VLREQAGADATESFEDVGHSP 71
Query: 65 DIDDIS 70
D ++S
Sbjct: 72 DAREMS 77
>pdb|2IBJ|A Chain A, Structure Of House Fly Cytochrome B5
Length = 88
Score = 31.6 bits (70), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 19/52 (36%), Positives = 29/52 (55%), Gaps = 1/52 (1%)
Query: 2 FSKEEIAKYVTEDKLYLVILGHVFDVTKGKNYYKKGETYHC-FVGRDGTRAF 52
F++ E+AK T+DK + +I +V+DVT N + GE G+D T F
Sbjct: 9 FTRAEVAKNNTKDKNWFIIHNNVYDVTAFLNEHPGGEEVLIEQAGKDATEHF 60
>pdb|3NER|A Chain A, Structure Of Human Type B Cytochrome B5
pdb|3NER|B Chain B, Structure Of Human Type B Cytochrome B5
Length = 92
Score = 31.2 bits (69), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 23/65 (35%), Positives = 36/65 (55%), Gaps = 4/65 (6%)
Query: 5 EEIAKYVTEDKLYLVILGHVFDVTKGKNYYKKGETYHCFVGRDGTRAFVSGNFTDEGLTE 64
EE+AK + +L+LVI G V+DVT+ N + GE + + G A S +F D G +
Sbjct: 15 EEVAKRNSLKELWLVIHGRVYDVTRFLNEHPGGE--EVLLEQAGVDA--SESFEDVGHSS 70
Query: 65 DIDDI 69
D ++
Sbjct: 71 DAREM 75
>pdb|1LJ0|A Chain A, Structure Of Quintuple Mutant Of The Rat Outer
Mitocondrial Cytochrome B5.
pdb|1LJ0|B Chain B, Structure Of Quintuple Mutant Of The Rat Outer
Mitocondrial Cytochrome B5.
pdb|1LJ0|C Chain C, Structure Of Quintuple Mutant Of The Rat Outer
Mitocondrial Cytochrome B5.
pdb|1LJ0|D Chain D, Structure Of Quintuple Mutant Of The Rat Outer
Mitocondrial Cytochrome B5
Length = 92
Score = 30.8 bits (68), Expect = 0.63, Method: Compositional matrix adjust.
Identities = 20/66 (30%), Positives = 37/66 (56%), Gaps = 4/66 (6%)
Query: 5 EEIAKYVTEDKLYLVILGHVFDVTKGKNYYKKGETYHCFVGRDGTRAFVSGNFTDEGLTE 64
EE+AK T ++ ++V+ G V+D+T+ + + GE V R+ A + +F D G +
Sbjct: 15 EEVAKRNTSEETWMVLHGRVYDLTRFLSEHPGGEE----VLREQAGADATESFEDVGHSP 70
Query: 65 DIDDIS 70
D ++S
Sbjct: 71 DAREMS 76
>pdb|1ICC|A Chain A, Rat Outer Mitochondrial Membrane Cytochrome B5
pdb|1ICC|B Chain B, Rat Outer Mitochondrial Membrane Cytochrome B5
pdb|1ICC|C Chain C, Rat Outer Mitochondrial Membrane Cytochrome B5
pdb|1ICC|D Chain D, Rat Outer Mitochondrial Membrane Cytochrome B5
Length = 87
Score = 30.0 bits (66), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 20/68 (29%), Positives = 37/68 (54%), Gaps = 4/68 (5%)
Query: 2 FSKEEIAKYVTEDKLYLVILGHVFDVTKGKNYYKKGETYHCFVGRDGTRAFVSGNFTDEG 61
+ EE+AK T ++ ++VI G V+D+T+ + + GE V R+ A + +F D G
Sbjct: 7 YRLEEVAKRNTSEETWMVIHGRVYDLTRFLSEHPGGEE----VLREQAGADATESFEDVG 62
Query: 62 LTEDIDDI 69
+ D ++
Sbjct: 63 HSPDAREM 70
>pdb|3E9H|A Chain A, Lysyl-Trna Synthetase From Bacillus Stearothermophilus
Complexed With L-Lysylsulfamoyl Adenosine
pdb|3E9H|B Chain B, Lysyl-Trna Synthetase From Bacillus Stearothermophilus
Complexed With L-Lysylsulfamoyl Adenosine
pdb|3E9H|C Chain C, Lysyl-Trna Synthetase From Bacillus Stearothermophilus
Complexed With L-Lysylsulfamoyl Adenosine
pdb|3E9H|D Chain D, Lysyl-Trna Synthetase From Bacillus Stearothermophilus
Complexed With L-Lysylsulfamoyl Adenosine
pdb|3E9I|A Chain A, Lysyl-Trna Synthetase From Bacillus Stearothermophilus
Complexed With L-Lysine Hydroxamate-Amp
pdb|3E9I|B Chain B, Lysyl-Trna Synthetase From Bacillus Stearothermophilus
Complexed With L-Lysine Hydroxamate-Amp
pdb|3E9I|C Chain C, Lysyl-Trna Synthetase From Bacillus Stearothermophilus
Complexed With L-Lysine Hydroxamate-Amp
pdb|3E9I|D Chain D, Lysyl-Trna Synthetase From Bacillus Stearothermophilus
Complexed With L-Lysine Hydroxamate-Amp
pdb|3A74|A Chain A, Lysyl-Trna Synthetase From Bacillus Stearothermophilus
Complexed With Diadenosine Tetraphosphate (Ap4a)
pdb|3A74|B Chain B, Lysyl-Trna Synthetase From Bacillus Stearothermophilus
Complexed With Diadenosine Tetraphosphate (Ap4a)
pdb|3A74|C Chain C, Lysyl-Trna Synthetase From Bacillus Stearothermophilus
Complexed With Diadenosine Tetraphosphate (Ap4a)
pdb|3A74|D Chain D, Lysyl-Trna Synthetase From Bacillus Stearothermophilus
Complexed With Diadenosine Tetraphosphate (Ap4a)
Length = 493
Score = 29.6 bits (65), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 32/91 (35%), Positives = 40/91 (43%), Gaps = 13/91 (14%)
Query: 41 HCFVGRDGTRAFVSG-NFTDEGLTEDIDDISGTEAIELN-NWLDFYRTNYVYEGHLIGRF 98
H G R F++ N D L I AIEL+ L VYE IGR
Sbjct: 202 HAVAGGAAARPFITHHNALDMTLYMRI-------AIELHLKRLIVGGLEKVYE---IGRV 251
Query: 99 FNTNGSPTRHWHEF-QLKLKEAEADSEEVLQ 128
F G TRH EF L+L EA AD ++++
Sbjct: 252 FRNEGISTRHNPEFTMLELYEAYADFRDIMK 282
>pdb|1AWP|A Chain A, Rat Outer Mitochondrial Membrane Cytochrome B5
pdb|1AWP|B Chain B, Rat Outer Mitochondrial Membrane Cytochrome B5
Length = 92
Score = 29.6 bits (65), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 17/52 (32%), Positives = 29/52 (55%), Gaps = 1/52 (1%)
Query: 2 FSKEEIAKYVTEDKLYLVILGHVFDVTKGKNYYKKGETYHC-FVGRDGTRAF 52
+ EE+AK T ++ ++VI G V+D+T+ + + GE G D T +F
Sbjct: 12 YRLEEVAKRNTAEETWMVIHGRVYDITRFLSEHPGGEELLLEQAGADATESF 63
>pdb|1EUE|A Chain A, Rat Outer Mitochondrial Membrane Cytochrome B5
pdb|1EUE|B Chain B, Rat Outer Mitochondrial Membrane Cytochrome B5
Length = 86
Score = 29.3 bits (64), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 17/52 (32%), Positives = 29/52 (55%), Gaps = 1/52 (1%)
Query: 2 FSKEEIAKYVTEDKLYLVILGHVFDVTKGKNYYKKGETYHC-FVGRDGTRAF 52
+ EE+AK T ++ ++VI G V+D+T+ + + GE G D T +F
Sbjct: 7 YRLEEVAKRNTAEETWMVIHGRVYDITRFLSEHPGGEEILLEQAGADATESF 58
>pdb|3MUS|A Chain A, 2a Resolution Structure Of Rat Type B Cytochrome B5
pdb|3MUS|B Chain B, 2a Resolution Structure Of Rat Type B Cytochrome B5
Length = 87
Score = 29.3 bits (64), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 17/52 (32%), Positives = 29/52 (55%), Gaps = 1/52 (1%)
Query: 2 FSKEEIAKYVTEDKLYLVILGHVFDVTKGKNYYKKGETYHC-FVGRDGTRAF 52
+ EE+AK T ++ ++VI G V+D+T+ + + GE G D T +F
Sbjct: 7 YRLEEVAKRNTAEETWMVIHGRVYDITRFLSEHPGGEEVLLEQAGADATESF 58
>pdb|1V71|A Chain A, Crystal Structure Of S.pombe Serine Racemase
pdb|1WTC|A Chain A, Crystal Structure Of S.ponbe Serine Racemase Complex With
Amppcp
pdb|2ZPU|A Chain A, Crystal Structure Of Modified Serine Racemase From
S.Pombe.
pdb|2ZR8|A Chain A, Crystal Structure Of Modified Serine Racemase Complexed
With Serine
Length = 323
Score = 29.3 bits (64), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 21/67 (31%), Positives = 30/67 (44%), Gaps = 5/67 (7%)
Query: 30 GKNYYKKGETYHCFVGR---DGTRAFVSGNFTDEGLTEDIDDISGTEAIELNNWLDFY-- 84
G+ ++KG H + DG + GN+T + E +DDI EL + L FY
Sbjct: 215 GQQSFRKGSIVHIDTPKTIADGAQTQHLGNYTFSIIKEKVDDILTVSDEELIDCLKFYAA 274
Query: 85 RTNYVYE 91
R V E
Sbjct: 275 RMKIVVE 281
>pdb|1B5M|A Chain A, Rat Outer Mitochondrial Membrane Cytochrome B5
Length = 84
Score = 28.9 bits (63), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 17/52 (32%), Positives = 29/52 (55%), Gaps = 1/52 (1%)
Query: 2 FSKEEIAKYVTEDKLYLVILGHVFDVTKGKNYYKKGETYHC-FVGRDGTRAF 52
+ EE+AK T ++ ++VI G V+D+T+ + + GE G D T +F
Sbjct: 5 YRLEEVAKRNTAEETWMVIHGRVYDITRFLSEHPGGEEVLLEQAGADATESF 56
>pdb|1X3X|A Chain A, Crystal Structure Of Cytochrome B5 From Ascaris Suum
pdb|1X3X|B Chain B, Crystal Structure Of Cytochrome B5 From Ascaris Suum
Length = 82
Score = 28.9 bits (63), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 15/51 (29%), Positives = 28/51 (54%)
Query: 2 FSKEEIAKYVTEDKLYLVILGHVFDVTKGKNYYKKGETYHCFVGRDGTRAF 52
++KEE+AK+ T++ L+++ G V D+T + G+ G+D T
Sbjct: 6 YTKEEVAKHNTQNDLWIIYDGEVHDMTSFYKEHPGGKVILNKAGQDATSVL 56
>pdb|3KS0|A Chain A, Crystal Structure Of The Heme Domain Of Flavocytochrome
B2 In Complex With Fab B2b4
pdb|3KS0|B Chain B, Crystal Structure Of The Heme Domain Of Flavocytochrome
B2 In Complex With Fab B2b4
Length = 95
Score = 28.9 bits (63), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 17/52 (32%), Positives = 28/52 (53%), Gaps = 1/52 (1%)
Query: 2 FSKEEIAKYVTEDKLYLVILGHVFDVTKGKNYYKKGETYHCF-VGRDGTRAF 52
S E+AK+ D ++VI G+V+D+T+ + G+ F G+D T F
Sbjct: 6 ISPAEVAKHNKPDDCWVVINGYVYDLTRFLPNHPGGQDVIKFNAGKDVTAIF 57
>pdb|1LDC|A Chain A, X-Ray Structure Of Two Complexes Of The Y143f
Flavocytochrome B2 Mutant Crystallized In The Presence
Of Lactate Or Phenyl-Lactate
pdb|1LDC|B Chain B, X-Ray Structure Of Two Complexes Of The Y143f
Flavocytochrome B2 Mutant Crystallized In The Presence
Of Lactate Or Phenyl-Lactate
pdb|1LCO|A Chain A, X-Ray Structure Of Two Complexes Of The Y143f
Flavocytochrome B2 Mutant Crystallized In The Presence
Of Lactate Or Phenyl-Lactate
pdb|1LCO|B Chain B, X-Ray Structure Of Two Complexes Of The Y143f
Flavocytochrome B2 Mutant Crystallized In The Presence
Of Lactate Or Phenyl-Lactate
Length = 511
Score = 27.7 bits (60), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 17/52 (32%), Positives = 28/52 (53%), Gaps = 1/52 (1%)
Query: 2 FSKEEIAKYVTEDKLYLVILGHVFDVTKGKNYYKKGETYHCF-VGRDGTRAF 52
S E+AK+ D ++VI G+V+D+T+ + G+ F G+D T F
Sbjct: 11 ISPAEVAKHNKPDDCWVVINGYVYDLTRFLPNHPGGQDVIKFNAGKDVTAIF 62
>pdb|1FCB|A Chain A, Molecular Structure Of Flavocytochrome B2 At 2.4
Angstroms Resolution
pdb|1FCB|B Chain B, Molecular Structure Of Flavocytochrome B2 At 2.4
Angstroms Resolution
pdb|1KBI|A Chain A, Crystallographic Study Of The Recombinant Flavin-Binding
Domain Of Baker's Yeast Flavocytochrome B2: Comparison
With The Intact Wild- Type Enzyme
pdb|1KBI|B Chain B, Crystallographic Study Of The Recombinant Flavin-Binding
Domain Of Baker's Yeast Flavocytochrome B2: Comparison
With The Intact Wild- Type Enzyme
Length = 511
Score = 27.7 bits (60), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 17/52 (32%), Positives = 28/52 (53%), Gaps = 1/52 (1%)
Query: 2 FSKEEIAKYVTEDKLYLVILGHVFDVTKGKNYYKKGETYHCF-VGRDGTRAF 52
S E+AK+ D ++VI G+V+D+T+ + G+ F G+D T F
Sbjct: 11 ISPAEVAKHNKPDDCWVVINGYVYDLTRFLPNHPGGQDVIKFNAGKDVTAIF 62
>pdb|1SZF|A Chain A, A198g:l230a Mutant Flavocytochrome B2 With Pyruvate
Bound
pdb|1SZF|B Chain B, A198g:l230a Mutant Flavocytochrome B2 With Pyruvate
Bound
pdb|1SZG|A Chain A, A198g:l230a Flavocytochrome B2 With Sulfite Bound
pdb|1SZG|B Chain B, A198g:l230a Flavocytochrome B2 With Sulfite Bound
Length = 511
Score = 27.7 bits (60), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 17/52 (32%), Positives = 28/52 (53%), Gaps = 1/52 (1%)
Query: 2 FSKEEIAKYVTEDKLYLVILGHVFDVTKGKNYYKKGETYHCF-VGRDGTRAF 52
S E+AK+ D ++VI G+V+D+T+ + G+ F G+D T F
Sbjct: 11 ISPAEVAKHNKPDDCWVVINGYVYDLTRFLPNHPGGQDVIKFNAGKDVTAIF 62
>pdb|2OZ0|A Chain A, Mechanistic And Structural Studies Of H373q
Flavocytochrome B2: Effects Of Mutating The Active Site
Base
pdb|2OZ0|B Chain B, Mechanistic And Structural Studies Of H373q
Flavocytochrome B2: Effects Of Mutating The Active Site
Base
Length = 511
Score = 27.7 bits (60), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 17/52 (32%), Positives = 28/52 (53%), Gaps = 1/52 (1%)
Query: 2 FSKEEIAKYVTEDKLYLVILGHVFDVTKGKNYYKKGETYHCF-VGRDGTRAF 52
S E+AK+ D ++VI G+V+D+T+ + G+ F G+D T F
Sbjct: 11 ISPAEVAKHNKPDDCWVVINGYVYDLTRFLPNHPGGQDVIKFNAGKDVTAIF 62
>pdb|1SZE|A Chain A, L230a Mutant Flavocytochrome B2 With Benzoylformate
pdb|1SZE|B Chain B, L230a Mutant Flavocytochrome B2 With Benzoylformate
Length = 511
Score = 27.7 bits (60), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 17/52 (32%), Positives = 28/52 (53%), Gaps = 1/52 (1%)
Query: 2 FSKEEIAKYVTEDKLYLVILGHVFDVTKGKNYYKKGETYHCF-VGRDGTRAF 52
S E+AK+ D ++VI G+V+D+T+ + G+ F G+D T F
Sbjct: 11 ISPAEVAKHNKPDDCWVVINGYVYDLTRFLPNHPGGQDVIKFNAGKDVTAIF 62
>pdb|1LTD|A Chain A, The 2.6 Angstroms Refined Structure Of The Escherichia
Coli Recombinant Saccharomyces Cerevisiae
Flavocytochrome B2-Sulphite Complex
pdb|1LTD|B Chain B, The 2.6 Angstroms Refined Structure Of The Escherichia
Coli Recombinant Saccharomyces Cerevisiae
Flavocytochrome B2-Sulphite Complex
Length = 506
Score = 27.7 bits (60), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 17/52 (32%), Positives = 28/52 (53%), Gaps = 1/52 (1%)
Query: 2 FSKEEIAKYVTEDKLYLVILGHVFDVTKGKNYYKKGETYHCF-VGRDGTRAF 52
S E+AK+ D ++VI G+V+D+T+ + G+ F G+D T F
Sbjct: 6 ISPAEVAKHNKPDDCWVVINGYVYDLTRFLPNHPGGQDVIKFNAGKDVTAIF 57
>pdb|2QQS|A Chain A, Jmjd2a Tandem Tudor Domains In Complex With A
Trimethylated Histone H4-K20 Peptide
pdb|2QQS|B Chain B, Jmjd2a Tandem Tudor Domains In Complex With A
Trimethylated Histone H4-K20 Peptide
Length = 118
Score = 27.3 bits (59), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 17/61 (27%), Positives = 29/61 (47%), Gaps = 5/61 (8%)
Query: 22 GHVFDVTKGKNY---YKKGETYHCFVGRDGTRAFVSGNFTDEGLTEDI--DDISGTEAIE 76
GH+ +T G+ +K G Y C V R T F NF D ++++ +DI + ++
Sbjct: 1 GHMQSITAGQKVISKHKNGRFYQCEVVRLTTETFYEVNFDDGSFSDNLYPEDIVSQDCLQ 60
Query: 77 L 77
Sbjct: 61 F 61
>pdb|1M2I|A Chain A, Crystal Structure Of E44aE56A MUTANT OF CYTOCHROME B5
Length = 82
Score = 27.3 bits (59), Expect = 6.8, Method: Compositional matrix adjust.
Identities = 20/71 (28%), Positives = 34/71 (47%), Gaps = 4/71 (5%)
Query: 2 FSKEEIAKYVTEDKLYLVILGHVFDVTKGKNYYKKGETYHCFVGRDGTRAFVSGNFTDEG 61
++ EEI K+ +L++ V+D+TK + GE V R+ + NF D G
Sbjct: 5 YTLEEIQKHNNSKSTWLILHYKVYDLTKFLEEHPGGEA----VLREQAGGDATANFEDVG 60
Query: 62 LTEDIDDISGT 72
+ D ++S T
Sbjct: 61 HSTDARELSKT 71
>pdb|1ES1|A Chain A, Crystal Structure Of Val61his Mutant Of
Trypsin-Solubilized Fragment Of Cytochrome B5
Length = 82
Score = 26.9 bits (58), Expect = 8.6, Method: Compositional matrix adjust.
Identities = 20/71 (28%), Positives = 34/71 (47%), Gaps = 4/71 (5%)
Query: 2 FSKEEIAKYVTEDKLYLVILGHVFDVTKGKNYYKKGETYHCFVGRDGTRAFVSGNFTDEG 61
++ EEI K+ +L++ V+D+TK + GE V R+ + NF D G
Sbjct: 5 YTLEEIQKHNNSKSTWLILHYKVYDLTKFLEEHPGGEE----VLREQAGGDATENFEDHG 60
Query: 62 LTEDIDDISGT 72
+ D ++S T
Sbjct: 61 HSTDARELSKT 71
>pdb|1J0Q|A Chain A, Solution Structure Of Oxidized Bovine Microsomal
Cytochrome B5 Mutant V61h
Length = 82
Score = 26.9 bits (58), Expect = 8.9, Method: Compositional matrix adjust.
Identities = 20/71 (28%), Positives = 34/71 (47%), Gaps = 4/71 (5%)
Query: 2 FSKEEIAKYVTEDKLYLVILGHVFDVTKGKNYYKKGETYHCFVGRDGTRAFVSGNFTDEG 61
++ EEI K+ +L++ V+D+TK + GE V R+ + NF D G
Sbjct: 5 YTLEEIQKHNNSKSTWLILHYKVYDLTKFLEEHPGGEE----VLREQAGGDATENFEDHG 60
Query: 62 LTEDIDDISGT 72
+ D ++S T
Sbjct: 61 HSTDARELSKT 71
>pdb|3FKH|A Chain A, Crystal Structure Of Putative Pyridoxamine 5'-Phosphate
Oxidase (Np_601736.1) From Corynebacterium Glutamicum
Atcc 13032 Kitasato At 2.51 A Resolution
pdb|3FKH|B Chain B, Crystal Structure Of Putative Pyridoxamine 5'-Phosphate
Oxidase (Np_601736.1) From Corynebacterium Glutamicum
Atcc 13032 Kitasato At 2.51 A Resolution
pdb|3FKH|C Chain C, Crystal Structure Of Putative Pyridoxamine 5'-Phosphate
Oxidase (Np_601736.1) From Corynebacterium Glutamicum
Atcc 13032 Kitasato At 2.51 A Resolution
pdb|3FKH|D Chain D, Crystal Structure Of Putative Pyridoxamine 5'-Phosphate
Oxidase (Np_601736.1) From Corynebacterium Glutamicum
Atcc 13032 Kitasato At 2.51 A Resolution
pdb|3FKH|E Chain E, Crystal Structure Of Putative Pyridoxamine 5'-Phosphate
Oxidase (Np_601736.1) From Corynebacterium Glutamicum
Atcc 13032 Kitasato At 2.51 A Resolution
pdb|3FKH|F Chain F, Crystal Structure Of Putative Pyridoxamine 5'-Phosphate
Oxidase (Np_601736.1) From Corynebacterium Glutamicum
Atcc 13032 Kitasato At 2.51 A Resolution
Length = 138
Score = 26.9 bits (58), Expect = 9.1, Method: Compositional matrix adjust.
Identities = 13/49 (26%), Positives = 23/49 (46%), Gaps = 2/49 (4%)
Query: 62 LTEDIDDISGTEAIELNNWLDFYRTNYV--YEGHLIGRFFNTNGSPTRH 108
+ +D+I+ + +EL W+ + NYV + GR F P R+
Sbjct: 90 IVRKLDEIAYADTLELKPWIPTLKYNYVRIVPNEITGREFTLGEEPERY 138
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.318 0.137 0.434
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,641,080
Number of Sequences: 62578
Number of extensions: 357257
Number of successful extensions: 729
Number of sequences better than 100.0: 55
Number of HSP's better than 100.0 without gapping: 20
Number of HSP's successfully gapped in prelim test: 35
Number of HSP's that attempted gapping in prelim test: 709
Number of HSP's gapped (non-prelim): 55
length of query: 217
length of database: 14,973,337
effective HSP length: 95
effective length of query: 122
effective length of database: 9,028,427
effective search space: 1101468094
effective search space used: 1101468094
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 49 (23.5 bits)