Query psy15661
Match_columns 217
No_of_seqs 224 out of 768
Neff 4.6
Searched_HMMs 46136
Date Fri Aug 16 18:22:44 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy15661.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/15661hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1108|consensus 100.0 3.7E-87 8.1E-92 584.4 16.3 213 1-215 61-280 (281)
2 KOG1110|consensus 100.0 4.7E-37 1E-41 260.0 9.3 96 1-96 57-155 (183)
3 PF00173 Cyt-b5: Cytochrome b5 99.6 2.9E-15 6.3E-20 107.6 5.4 73 1-94 1-75 (76)
4 COG4892 Predicted heme/steroid 99.4 2.1E-13 4.5E-18 101.3 3.8 72 1-96 3-77 (81)
5 KOG0536|consensus 99.1 3.4E-11 7.3E-16 99.0 4.5 72 2-96 70-144 (145)
6 KOG0537|consensus 99.1 5.1E-11 1.1E-15 96.2 2.8 53 1-54 6-60 (124)
7 COG5274 CYB5 Cytochrome b invo 98.6 6E-08 1.3E-12 82.0 4.6 56 2-58 52-109 (164)
8 PLN03199 delta6-acyl-lipid des 98.3 6.9E-07 1.5E-11 85.8 4.1 52 1-54 25-77 (485)
9 PLN03198 delta6-acyl-lipid des 98.2 5.8E-07 1.3E-11 87.5 2.8 53 1-54 105-158 (526)
10 PLN02252 nitrate reductase [NA 98.0 2.1E-06 4.6E-11 88.1 2.4 53 1-54 519-573 (888)
11 KOG4232|consensus 97.4 9.3E-05 2E-09 70.7 2.2 52 2-55 10-63 (430)
12 KOG4576|consensus 94.9 0.02 4.3E-07 48.1 2.6 51 1-52 81-132 (167)
13 PF14901 Jiv90: Cleavage induc 53.5 9.4 0.0002 29.9 1.9 15 15-29 56-70 (94)
14 PF07277 SapC: SapC; InterPro 49.1 19 0.00042 31.5 3.3 59 87-145 107-172 (221)
15 PF07592 DDE_Tnp_ISAZ013: Rhod 43.7 18 0.00039 33.9 2.4 90 70-167 160-250 (311)
16 PRK15418 transcriptional regul 40.4 36 0.00079 31.3 3.9 30 69-106 226-255 (318)
17 PF04198 Sugar-bind: Putative 38.6 20 0.00042 31.8 1.8 22 86-107 176-197 (255)
18 COG0133 TrpB Tryptophan syntha 33.4 90 0.0019 30.1 5.3 59 67-135 164-225 (396)
19 PF14427 Pput2613-deam: Pput_2 33.0 32 0.0007 28.0 2.0 36 131-166 73-115 (118)
20 PF10276 zf-CHCC: Zinc-finger 32.7 68 0.0015 21.3 3.2 25 145-174 2-26 (40)
21 PF12596 Tnp_P_element_C: 87kD 30.5 39 0.00084 27.0 2.1 29 67-95 72-101 (106)
22 PHA02310 hypothetical protein 28.0 37 0.0008 28.2 1.6 25 14-38 87-111 (130)
23 PRK06549 acetyl-CoA carboxylas 25.9 46 0.001 27.2 1.8 15 15-29 4-18 (130)
24 TIGR01252 acetolac_decarb alph 25.6 2.4E+02 0.0052 25.2 6.4 86 2-98 21-117 (232)
25 COG0411 LivG ABC-type branched 24.7 1.1E+02 0.0023 28.0 4.1 55 17-76 17-78 (250)
26 PF09356 Phage_BR0599: Phage c 24.7 27 0.00058 26.1 0.2 17 198-214 46-62 (80)
27 PF01920 Prefoldin_2: Prefoldi 24.3 57 0.0012 24.1 1.9 21 3-23 34-54 (106)
28 PF06881 Elongin_A: RNA polyme 22.5 2.8E+02 0.0061 21.3 5.6 24 67-90 17-52 (109)
29 COG2390 DeoR Transcriptional r 21.5 92 0.002 29.1 3.1 23 87-109 240-262 (321)
30 KOG0173|consensus 21.3 97 0.0021 28.6 3.1 34 5-41 122-157 (271)
31 TIGR02491 NrdG anaerobic ribon 20.0 4.6E+02 0.01 21.1 6.6 85 24-119 2-90 (154)
No 1
>KOG1108|consensus
Probab=100.00 E-value=3.7e-87 Score=584.38 Aligned_cols=213 Identities=45% Similarity=0.935 Sum_probs=204.7
Q ss_pred CCCHHHHhcccC---CCcEEEEEcCEEEecccCCccccCCCceeeccCCccchhcccCCCCCCCCCCCCCCCCHHHHHhH
Q psy15661 1 MFSKEEIAKYVT---EDKLYLVILGHVFDVTKGKNYYKKGETYHCFVGRDGTRAFVSGNFTDEGLTEDIDDISGTEAIEL 77 (217)
Q Consensus 1 lfT~eEL~~ydG---~~~iylaI~G~VYDVT~g~~~YgpGG~Y~~fAGrDaSraf~tg~f~~~~l~~d~~~Ls~~e~~~L 77 (217)
|||+|||++||| ++||||||+|.|||||+|++|||||++|++||||||||||++|+|++.+|+||+.+|+++||.+|
T Consensus 61 lFtpeeLa~fnGt~e~~piyLaiLGsVfdVs~gk~hYgsG~sYnhFaGRDASrAFvsGdf~e~gl~d~v~gLs~dEllsi 140 (281)
T KOG1108|consen 61 LFTPEELAKFNGTEEGRPIYLAILGSVFDVSRGKKHYGSGCSYNHFAGRDASRAFVSGDFEEPGLADDVLGLSPDELLSI 140 (281)
T ss_pred eeCHHHHhhccCCCCCCceeeeeeceeeeccCCeeeeCCCCCcccccccccchheecccCCCCcchhhhccCCHHHHhhh
Confidence 699999999999 78999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhccCceeeeeeccccCCCCCCCCccHHHHHHHHHHHHhhHHHHHHhcCCCCCcceecCCCCceEEecCCCCCc
Q psy15661 78 NNWLDFYRTNYVYEGHLIGRFFNTNGSPTRHWHEFQLKLKEAEADSEEVLQEKLKYPPCNVVWSQDEGTRVWCSTKSGGI 157 (217)
Q Consensus 78 ~~W~~fy~~kY~~VG~Li~~~yd~~G~pt~~~~~~~~~~~~~~~~~~~~~~~~~~~P~CN~~ws~~~G~~vWCs~~SGGi 157 (217)
.+|++||++.|++||+|++||||++|.||++|+++++++++|++.+++|++|+++||||||||||+ |||||||++||||
T Consensus 141 ~dWrsFY~k~Y~~vGrv~gryYds~G~pT~~lt~v~a~~era~e~~k~q~~e~a~fp~CNsewsq~-G~RvWCstkgggv 219 (281)
T KOG1108|consen 141 ADWRSFYQKDYVYVGRVIGRYYDSKGAPTPYLTKVLALLERAREAKKQQEEERARFPPCNSEWSQE-GTRVWCSTKGGGV 219 (281)
T ss_pred hhhhhhhhcccceeeEEeeeeecCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCchhhhcc-CceEEEecCCCCe
Confidence 999999999999999999999999999999999999999999999999999999999999999998 9999999999999
Q ss_pred ccccccccCeeecCCCCcceeEEeeCCCCCCCccccCCCC----CceecCCCCcCCCccccc
Q psy15661 158 ERDWTGVPRKLYQAGAESFRCACVNLDLSVGSDVINGRQG----NLEAYENCDPKATSCYWL 215 (217)
Q Consensus 158 ~R~W~GvPRkl~~~g~~~~rCaCv~~~~~~~~~~~~~~~~----~l~~Y~gC~~~a~~C~~~ 215 (217)
||+|+|||||||+||++++|||||+.+...+ ...++|+| ||++|+||+|+|.+|+++
T Consensus 220 er~wigyprkLy~pg~k~frCaCVp~~~~~e-~~~~~nrgdlDh~L~~y~~C~P~a~~C~~~ 280 (281)
T KOG1108|consen 220 ERSWIGYPRKLYSPGNKSFRCACVPDAELDE-IDAGGNRGDLDHMLKPYDNCEPQARECFYR 280 (281)
T ss_pred EEEEeeccccccCCCCCCcceEeccccCCCc-CCCCCCccccccccccCCCCCcccceeeec
Confidence 9999999999999999999999998754433 55666776 899999999999999986
No 2
>KOG1110|consensus
Probab=100.00 E-value=4.7e-37 Score=260.04 Aligned_cols=96 Identities=31% Similarity=0.640 Sum_probs=94.0
Q ss_pred CCCHHHHhcccC---CCcEEEEEcCEEEecccCCccccCCCceeeccCCccchhcccCCCCCCCCCCCCCCCCHHHHHhH
Q psy15661 1 MFSKEEIAKYVT---EDKLYLVILGHVFDVTKGKNYYKKGETYHCFVGRDGTRAFVSGNFTDEGLTEDIDDISGTEAIEL 77 (217)
Q Consensus 1 lfT~eEL~~ydG---~~~iylaI~G~VYDVT~g~~~YgpGG~Y~~fAGrDaSraf~tg~f~~~~l~~d~~~Ls~~e~~~L 77 (217)
.||++||++||| ++||||||+|+|||||+|++||||||+|..||||||||+|++++|+..++++|+++|+..||++|
T Consensus 57 dfT~eEL~~ydGs~~d~~Il~AI~G~VYDVT~Gr~FYGp~GpY~~fAG~DASR~La~~s~d~~d~~ddlsdL~a~e~eal 136 (183)
T KOG1110|consen 57 DFTVEELRQYDGSDPDKPILLAINGKVYDVTRGREFYGPGGPYSLFAGKDASRGLAKMSFDLSDETDDLSDLTAEELEAL 136 (183)
T ss_pred ccCHHHHHhcCCCCCCCceEEEecceEEEecCCccccCCCCCchhhcccchHHHHHhcccchhhccccccccCHHHHHHH
Confidence 489999999999 67999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhccCceeeeeec
Q psy15661 78 NNWLDFYRTNYVYEGHLIG 96 (217)
Q Consensus 78 ~~W~~fy~~kY~~VG~Li~ 96 (217)
++|..+|+.||++||+|+.
T Consensus 137 ~eWE~~fk~KY~~VG~L~~ 155 (183)
T KOG1110|consen 137 NEWETKFKAKYPVVGRLVK 155 (183)
T ss_pred HHHHHHHhhcCceeEEeec
Confidence 9999999999999999997
No 3
>PF00173 Cyt-b5: Cytochrome b5-like Heme/Steroid binding domain This prints entry is a subset of the Pfam entry; InterPro: IPR001199 Cytochromes b5 are ubiquitous electron transport proteins found in animals, plants and yeasts []. The microsomal and mitochondrial variants are membrane-bound, while those from erythrocytes and other animal tissues are water-soluble [, ]. The 3D structure of bovine cyt b5 is known, the fold belonging to the alpha+beta class, with 5 strands and 5 short helices forming a framework for supporting a central haem group []. The cytochrome b5 domain is similar to that of a number of oxidoreductases, such as plant and fungal nitrate reductases, sulphite oxidase, yeast flavocytochrome b2 (L-lactate dehydrogenase) and plant cyt b5/acyl lipid desaturase fusion protein.; GO: 0020037 heme binding; PDB: 2I96_A 3KS0_A 1KBI_B 1KBJ_B 1LTD_A 1SZG_B 1SZF_A 1LDC_B 2OZ0_B 1LCO_A ....
Probab=99.57 E-value=2.9e-15 Score=107.59 Aligned_cols=73 Identities=30% Similarity=0.418 Sum_probs=63.3
Q ss_pred CCCHHHHhcccCCCcEEEEEcCEEEecccCCccccCCC--ceeeccCCccchhcccCCCCCCCCCCCCCCCCHHHHHhHH
Q psy15661 1 MFSKEEIAKYVTEDKLYLVILGHVFDVTKGKNYYKKGE--TYHCFVGRDGTRAFVSGNFTDEGLTEDIDDISGTEAIELN 78 (217)
Q Consensus 1 lfT~eEL~~ydG~~~iylaI~G~VYDVT~g~~~YgpGG--~Y~~fAGrDaSraf~tg~f~~~~l~~d~~~Ls~~e~~~L~ 78 (217)
+||++||++||.+.++||+|+|+|||||.. ...+||| .+..+||+|+|.+| +.....
T Consensus 1 ~~t~~el~~h~~~~~~~v~i~g~VYDvt~~-~~~hpgg~~~~~~~aG~D~T~~f--------------------~~~~h~ 59 (76)
T PF00173_consen 1 VYTWEELAKHNKKGDCWVIIDGKVYDVTDF-LDRHPGGADILKKYAGRDATDAF--------------------EEAFHS 59 (76)
T ss_dssp EEEHHHHTTTEETTEEEEEETTEEEECTTT-TTTSTTTSHHHHTTTTSBTHHHH--------------------HHHTHH
T ss_pred CCCHHHHhhhCCCCCEEEEECCEEcccccc-cccccchhHHHHHhccccccHHH--------------------hhccCc
Confidence 589999999998889999999999999984 3579999 78899999999999 334455
Q ss_pred HHHHHHhccCceeeee
Q psy15661 79 NWLDFYRTNYVYEGHL 94 (217)
Q Consensus 79 ~W~~fy~~kY~~VG~L 94 (217)
.|...+..+|.+||+|
T Consensus 60 ~~~~~~l~~~~~vG~l 75 (76)
T PF00173_consen 60 WWAEKCLEKYYKVGYL 75 (76)
T ss_dssp HHHHHHHHGCGEEEEE
T ss_pred HHHHHHccCCCEEEEe
Confidence 7888888889999998
No 4
>COG4892 Predicted heme/steroid binding protein [General function prediction only]
Probab=99.40 E-value=2.1e-13 Score=101.35 Aligned_cols=72 Identities=28% Similarity=0.390 Sum_probs=54.8
Q ss_pred CCCHHHHhcccC-CCcEEEEEcCEEEecccCCccccCCCceeec-cCCccchhccc-CCCCCCCCCCCCCCCCHHHHHhH
Q psy15661 1 MFSKEEIAKYVT-EDKLYLVILGHVFDVTKGKNYYKKGETYHCF-VGRDGTRAFVS-GNFTDEGLTEDIDDISGTEAIEL 77 (217)
Q Consensus 1 lfT~eEL~~ydG-~~~iylaI~G~VYDVT~g~~~YgpGG~Y~~f-AGrDaSraf~t-g~f~~~~l~~d~~~Ls~~e~~~L 77 (217)
.||+|||++||| +.|+|||++|+|||||-+. .|+.|-..... ||+|.|.+|.. ...- ++.|
T Consensus 3 efTLEELs~ynG~nGpaYiA~~G~VYDvS~s~-~W~dGtHqglhsaG~DLs~~~~~~aphg---------------~eil 66 (81)
T COG4892 3 EFTLEELSKYNGENGPAYIAVNGTVYDVSLSP-SWGDGTHQGLHSAGKDLSSEFNSCAPHG---------------MEIL 66 (81)
T ss_pred eecHHHHHhhcCCCCCeEEEECCEEEeeccCc-ccCCCccccccccchhHHHHHhhcCCch---------------hHHH
Confidence 489999999999 7899999999999999764 46666665544 89998887742 1111 2222
Q ss_pred HHHHHHHhccCceeeeeec
Q psy15661 78 NNWLDFYRTNYVYEGHLIG 96 (217)
Q Consensus 78 ~~W~~fy~~kY~~VG~Li~ 96 (217)
+.||+||.|+.
T Consensus 67 --------~~~PvVG~L~k 77 (81)
T COG4892 67 --------TSLPVVGALIK 77 (81)
T ss_pred --------hcCchhheeec
Confidence 67999999985
No 5
>KOG0536|consensus
Probab=99.15 E-value=3.4e-11 Score=98.95 Aligned_cols=72 Identities=25% Similarity=0.507 Sum_probs=59.6
Q ss_pred CCHHHHhcccCCCcEEEEEcCEEEecccCCccccCCCc--eeeccCCccchhcccCCCCCCCCCCCCCCCCHHHHHhHHH
Q psy15661 2 FSKEEIAKYVTEDKLYLVILGHVFDVTKGKNYYKKGET--YHCFVGRDGTRAFVSGNFTDEGLTEDIDDISGTEAIELNN 79 (217)
Q Consensus 2 fT~eEL~~ydG~~~iylaI~G~VYDVT~g~~~YgpGG~--Y~~fAGrDaSraf~tg~f~~~~l~~d~~~Ls~~e~~~L~~ 79 (217)
+|.+||++|+....+|+||+|+|||||...+ |||||. .-..||+|||..|.+ .+.
T Consensus 70 vt~~El~KH~~~dDcW~~i~G~VYnVt~Yl~-fHPgG~d~lmk~aGrD~T~~Fnk----------------------~H~ 126 (145)
T KOG0536|consen 70 VTAEELKKHNKKDDCWIAIRGKVYNVTAYLD-FHPGGVDELMKHAGRDATKLFNK----------------------YHA 126 (145)
T ss_pred cCHHHHHhhCCccceEEEEcCEEEecccccc-cCCCCHHHHHHhcCcchHHHHHH----------------------HHH
Confidence 6899999999977799999999999999865 799996 557999999998854 478
Q ss_pred HHHHHh-ccCceeeeeec
Q psy15661 80 WLDFYR-TNYVYEGHLIG 96 (217)
Q Consensus 80 W~~fy~-~kY~~VG~Li~ 96 (217)
|++.=+ -+=-+||.|++
T Consensus 127 WVN~e~LL~~c~VGvl~d 144 (145)
T KOG0536|consen 127 WVNYEELLKKCFVGVLVD 144 (145)
T ss_pred HhcHHHHHhhceeeeecc
Confidence 876443 35678998876
No 6
>KOG0537|consensus
Probab=99.08 E-value=5.1e-11 Score=96.20 Aligned_cols=53 Identities=30% Similarity=0.495 Sum_probs=45.5
Q ss_pred CCCHHHHhcccCCCcEEEEEcCEEEecccCCccccCCCc--eeeccCCccchhccc
Q psy15661 1 MFSKEEIAKYVTEDKLYLVILGHVFDVTKGKNYYKKGET--YHCFVGRDGTRAFVS 54 (217)
Q Consensus 1 lfT~eEL~~ydG~~~iylaI~G~VYDVT~g~~~YgpGG~--Y~~fAGrDaSraf~t 54 (217)
+||++|+++||..+++||+|+|+|||||+... -||||. ....||+|||++|--
T Consensus 6 ~~~~~EV~kHn~~~d~Wvii~gkVYDvT~Fl~-eHPGG~~vLl~~AGkDaT~~F~~ 60 (124)
T KOG0537|consen 6 YYTLSEVAKHNKKDDCWVIIHGKVYDVTSFLD-EHPGGEDVLLEYAGKDATEAFED 60 (124)
T ss_pred cccHHHHHhhcCCCCeEEEECCEEEeccchhh-hCCChHHHHHHHhchhhHHhccc
Confidence 58999999999988899999999999998432 289984 568999999999844
No 7
>COG5274 CYB5 Cytochrome b involved in lipid metabolism [Energy production and conversion / Lipid metabolism]
Probab=98.57 E-value=6e-08 Score=82.01 Aligned_cols=56 Identities=29% Similarity=0.396 Sum_probs=47.7
Q ss_pred CCHHHHhcccCCCcEEEEEcCEEEecccCCccccCCCce--eeccCCccchhcccCCCC
Q psy15661 2 FSKEEIAKYVTEDKLYLVILGHVFDVTKGKNYYKKGETY--HCFVGRDGTRAFVSGNFT 58 (217)
Q Consensus 2 fT~eEL~~ydG~~~iylaI~G~VYDVT~g~~~YgpGG~Y--~~fAGrDaSraf~tg~f~ 58 (217)
++.+|+++|++...+||+|+|+|||||.... +||||.- ...+|+|||.+|.....+
T Consensus 52 ~~~eev~~h~~~~d~~ivi~g~VyDvs~fl~-~HPGGe~ii~~~~g~Dat~~f~~~~~~ 109 (164)
T COG5274 52 ITAEEVAKHNKSEDCWIVINGKVYDVSQFLD-EHPGGEDIIKDTAGKDATKAFNFLHHS 109 (164)
T ss_pred ccHHHHHHhcCccceEEEEcCEEEEhhhccc-cCCCcceeehhccCchhhhhhcccccc
Confidence 6899999999966699999999999998532 7899864 579999999999776655
No 8
>PLN03199 delta6-acyl-lipid desaturase-like protein; Provisional
Probab=98.26 E-value=6.9e-07 Score=85.81 Aligned_cols=52 Identities=23% Similarity=0.348 Sum_probs=44.9
Q ss_pred CCCHHHHhcccCCCcEEEEEcCEEEecccCCccccCCCce-eeccCCccchhccc
Q psy15661 1 MFSKEEIAKYVTEDKLYLVILGHVFDVTKGKNYYKKGETY-HCFVGRDGTRAFVS 54 (217)
Q Consensus 1 lfT~eEL~~ydG~~~iylaI~G~VYDVT~g~~~YgpGG~Y-~~fAGrDaSraf~t 54 (217)
.||.+|+++|+....+||+|+|+|||||+-. -||||.- ..+||+|||.+|..
T Consensus 25 ~~s~~ev~~h~~~~~~wi~i~g~vYDvt~f~--~HPGG~~i~~~aG~DaT~~F~~ 77 (485)
T PLN03199 25 KISWQEVKKHASPDDAWIIHQNKVYDVSNWH--DHPGGAVIFTHAGDDMTDIFAA 77 (485)
T ss_pred ccCHHHHHhhCCCCCeEEEECCEEEcCCCcC--cCCCchHHHhhCCCChhHHHHH
Confidence 4799999999997789999999999999863 5999972 26899999999954
No 9
>PLN03198 delta6-acyl-lipid desaturase; Provisional
Probab=98.23 E-value=5.8e-07 Score=87.46 Aligned_cols=53 Identities=30% Similarity=0.434 Sum_probs=44.9
Q ss_pred CCCHHHHhcccCCCcEEEEEcCEEEecccCCccccCCCce-eeccCCccchhccc
Q psy15661 1 MFSKEEIAKYVTEDKLYLVILGHVFDVTKGKNYYKKGETY-HCFVGRDGTRAFVS 54 (217)
Q Consensus 1 lfT~eEL~~ydG~~~iylaI~G~VYDVT~g~~~YgpGG~Y-~~fAGrDaSraf~t 54 (217)
.||.+|+++|+...++||+|+|+|||||+-.+ .||||.- ..++|+|||.+|..
T Consensus 105 ~~t~~ev~~H~~~~d~Wivi~gkVYDvT~fl~-~HPGG~~i~~~aG~DaT~~F~~ 158 (526)
T PLN03198 105 SHLLSEVAAHNKPNDCWIVIKNKVYDVSDFAA-EHPGGSVISTYFGRDGTDAFSS 158 (526)
T ss_pred cCCHHHHHhhCCCCCeEEEECCEEEecHHHHH-hCCCchHHHHhcCCcHhHHHHH
Confidence 48999999999977899999999999997422 4999972 26899999999954
No 10
>PLN02252 nitrate reductase [NADPH]
Probab=98.03 E-value=2.1e-06 Score=88.06 Aligned_cols=53 Identities=28% Similarity=0.427 Sum_probs=45.6
Q ss_pred CCCHHHHhcccCCCcEEEEEcCEEEecccCCccccCCCc--eeeccCCccchhccc
Q psy15661 1 MFSKEEIAKYVTEDKLYLVILGHVFDVTKGKNYYKKGET--YHCFVGRDGTRAFVS 54 (217)
Q Consensus 1 lfT~eEL~~ydG~~~iylaI~G~VYDVT~g~~~YgpGG~--Y~~fAGrDaSraf~t 54 (217)
.||.+||++|+....+||+|+|+|||||.... .||||. ...+||+|||.+|..
T Consensus 519 ~~t~~ev~~h~~~~~~Wivi~g~VYDvT~fl~-~HPGG~~~I~~~aG~DaT~~F~~ 573 (888)
T PLN02252 519 QYTMSEVRKHNSEDSCWIVVHGHVYDCTRFLK-DHPGGADSILINAGTDCTEEFDA 573 (888)
T ss_pred eeCHHHHHhhCcCCCeEEEECCEEEeCHHHHH-HCCChHHHHHhhcCCCcHHHHhh
Confidence 48999999999977799999999999997432 499995 568999999999954
No 11
>KOG4232|consensus
Probab=97.35 E-value=9.3e-05 Score=70.68 Aligned_cols=52 Identities=33% Similarity=0.441 Sum_probs=43.8
Q ss_pred CCHHHHhcccCCCcEEEEEcCEEEecccCCccccCCCc--eeeccCCccchhcccC
Q psy15661 2 FSKEEIAKYVTEDKLYLVILGHVFDVTKGKNYYKKGET--YHCFVGRDGTRAFVSG 55 (217)
Q Consensus 2 fT~eEL~~ydG~~~iylaI~G~VYDVT~g~~~YgpGG~--Y~~fAGrDaSraf~tg 55 (217)
+|.|++.++|+....|++|.| |||||+-.+ =||||+ ....+|.|||.+|..-
T Consensus 10 ~~we~~~~~~~~~~~W~~id~-vYd~s~~~~-~HPGG~~~I~~~~g~DaTdaF~Af 63 (430)
T KOG4232|consen 10 FSWEGKRKHDKAEGLWLVIDG-VYDISDWIK-RHPGGSRVIEHYAGQDATDAFEAF 63 (430)
T ss_pred eeccchhhccCCCceEEEeec-cccHHHHHH-hCCCchhHHHHhcCCccchHHHHh
Confidence 678899999997789999999 999997321 279996 4689999999999763
No 12
>KOG4576|consensus
Probab=94.93 E-value=0.02 Score=48.08 Aligned_cols=51 Identities=20% Similarity=0.359 Sum_probs=39.5
Q ss_pred CCCHHHHhcccC-CCcEEEEEcCEEEecccCCccccCCCceeeccCCccchhc
Q psy15661 1 MFSKEEIAKYVT-EDKLYLVILGHVFDVTKGKNYYKKGETYHCFVGRDGTRAF 52 (217)
Q Consensus 1 lfT~eEL~~ydG-~~~iylaI~G~VYDVT~g~~~YgpGG~Y~~fAGrDaSraf 52 (217)
++|.||+++|+. ..+|||-..--|||||..-. -+|||.-..+|.--|-.-|
T Consensus 81 iY~~EEV~~H~s~e~rIWVTyg~gVyDVTdFv~-~HPGGdKillAAG~a~dPF 132 (167)
T KOG4576|consen 81 IYTKEEVSSHTSPETRIWVTYGSGVYDVTDFVD-LHPGGDKILLAAGGALDPF 132 (167)
T ss_pred chhHHHHHhcCCCccceEEEecCcceeHHHHHH-hCCCcceeeeecCCCcCcH
Confidence 578999999999 78899999999999997432 3899976665544444433
No 13
>PF14901 Jiv90: Cleavage inducing molecular chaperone
Probab=53.48 E-value=9.4 Score=29.94 Aligned_cols=15 Identities=33% Similarity=0.720 Sum_probs=13.0
Q ss_pred cEEEEEcCEEEeccc
Q psy15661 15 KLYLVILGHVFDVTK 29 (217)
Q Consensus 15 ~iylaI~G~VYDVT~ 29 (217)
..|+-.+|+|||||.
T Consensus 56 ~yy~c~~g~VyDiTe 70 (94)
T PF14901_consen 56 TYYACMDGKVYDITE 70 (94)
T ss_pred EEEEEcCceEEehhh
Confidence 467888999999996
No 14
>PF07277 SapC: SapC; InterPro: IPR010836 This family contains a number of bacterial SapC proteins approximately 250 residues long. In Campylobacter fetus, SapC forms part of a paracrystalline surface layer (S-layer) that confers serum resistance [].
Probab=49.11 E-value=19 Score=31.51 Aligned_cols=59 Identities=19% Similarity=0.270 Sum_probs=35.9
Q ss_pred cCceeeeeec-cccCCCCCCCCccHHHHHHHHHHHHhhHHH------HHHhcCCCCCcceecCCCC
Q psy15661 87 NYVYEGHLIG-RFFNTNGSPTRHWHEFQLKLKEAEADSEEV------LQEKLKYPPCNVVWSQDEG 145 (217)
Q Consensus 87 kY~~VG~Li~-~~yd~~G~pt~~~~~~~~~~~~~~~~~~~~------~~~~~~~P~CN~~ws~~~G 145 (217)
.++.|..-.| +++|++|+||+++.++.+.+++-.+...+- -++..-+=|=+.......|
T Consensus 107 ~s~~v~~~~G~~LFd~~G~~T~~l~~~~~~L~~~~~~~~~T~~f~~~L~~~~Ll~~~~l~v~~~~g 172 (221)
T PF07277_consen 107 DSPLVSEDEGEPLFDEDGEPTEYLQQVLNFLQQYQQGRQQTQAFIKALAELGLLEPWTLTVTLDDG 172 (221)
T ss_pred CCCCcCCCCCccCcCCCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcccEEEEEeCCC
Confidence 3444433333 779999999999999887777665544432 2344445555555544333
No 15
>PF07592 DDE_Tnp_ISAZ013: Rhodopirellula transposase DDE domain; InterPro: IPR011518 These transposases are found in the planctomycete Rhodopirellula baltica, the cyanobacterium Nostoc, and the Gram-positive bacterium Streptomyces. More information about these proteins can be found at Protein of the Month: Transposase [].
Probab=43.70 E-value=18 Score=33.88 Aligned_cols=90 Identities=20% Similarity=0.416 Sum_probs=57.9
Q ss_pred CHHHHHhHHHHHHHH-hccCceeeeeeccccCCCCCCCCccHHHHHHHHHHHHhhHHHHHHhcCCCCCcceecCCCCceE
Q psy15661 70 SGTEAIELNNWLDFY-RTNYVYEGHLIGRFFNTNGSPTRHWHEFQLKLKEAEADSEEVLQEKLKYPPCNVVWSQDEGTRV 148 (217)
Q Consensus 70 s~~e~~~L~~W~~fy-~~kY~~VG~Li~~~yd~~G~pt~~~~~~~~~~~~~~~~~~~~~~~~~~~P~CN~~ws~~~G~~v 148 (217)
++--+..|..|=+.. ...||-.-.|.=. -|-.|.----.+.....|++-..+ -.-.-.-..|||=-|.|+.=+ =|.
T Consensus 160 a~Fav~~i~~WW~~~g~~~yp~a~~lli~-~D~GgsN~~r~r~wk~~L~~la~~-~gl~I~v~hyPP~tSKwN~IE-HRl 236 (311)
T PF07592_consen 160 ADFAVDSIRRWWEEMGKARYPHAKRLLIT-ADNGGSNGSRRRLWKKRLQELADE-TGLSIRVCHYPPGTSKWNPIE-HRL 236 (311)
T ss_pred HHHHHHHHHHHHHHhChhhcCchheEEEe-ccCCCCccchhHHHHHHHHHHHHH-hCCEEEEEEcCCCcccccchh-hhH
Confidence 444678998886555 8999998877531 244444333344555555432211 111223457999999999754 688
Q ss_pred EecCCCCCcccccccccCe
Q psy15661 149 WCSTKSGGIERDWTGVPRK 167 (217)
Q Consensus 149 WCs~~SGGi~R~W~GvPRk 167 (217)
|| -|+|+|.|.|=-
T Consensus 237 fs-----~is~~w~G~pl~ 250 (311)
T PF07592_consen 237 FS-----HISRNWRGRPLT 250 (311)
T ss_pred hH-----hhhhhcCCCcCC
Confidence 88 499999999843
No 16
>PRK15418 transcriptional regulator LsrR; Provisional
Probab=40.40 E-value=36 Score=31.28 Aligned_cols=30 Identities=27% Similarity=0.481 Sum_probs=25.7
Q ss_pred CCHHHHHhHHHHHHHHhccCceeeeeeccccCCCCCCC
Q psy15661 69 ISGTEAIELNNWLDFYRTNYVYEGHLIGRFFNTNGSPT 106 (217)
Q Consensus 69 Ls~~e~~~L~~W~~fy~~kY~~VG~Li~~~yd~~G~pt 106 (217)
|++++++.|. +--.||-+-++|||.+|++.
T Consensus 226 l~~~~~~~L~--------~~gAVGdi~g~f~D~~G~~v 255 (318)
T PRK15418 226 ISQGEQLMIG--------RKGAVGDILGYFFDADGELV 255 (318)
T ss_pred CCHHHHHHHH--------HCCceEEEeeeEECCCCCCc
Confidence 7888887773 35699999999999999987
No 17
>PF04198 Sugar-bind: Putative sugar-binding domain; InterPro: IPR007324 This probable domain is found in bacterial transcriptional regulators such as DeoR and SorC. One of these proteins, Q8U7I7 from SWISSPROT, has an N-terminal helix-turn-helix IPR000792 from INTERPRO that binds to DNA. This domain is probably the ligand regulator binding region. SorC is regulated by sorbose and other members of this family are likely to be regulated by other sugar substrates.; GO: 0030246 carbohydrate binding; PDB: 3KV1_A 3EFB_C 2W48_A 3BXH_A 3BXE_A 2OKG_A 3BXF_A 3BXG_A 2R5F_A 2O0M_A ....
Probab=38.59 E-value=20 Score=31.81 Aligned_cols=22 Identities=27% Similarity=0.528 Sum_probs=19.0
Q ss_pred ccCceeeeeeccccCCCCCCCC
Q psy15661 86 TNYVYEGHLIGRFFNTNGSPTR 107 (217)
Q Consensus 86 ~kY~~VG~Li~~~yd~~G~pt~ 107 (217)
.+--.||-+.++|||.+|++..
T Consensus 176 ~~~gAVGdi~~~f~d~~G~~v~ 197 (255)
T PF04198_consen 176 REKGAVGDICGRFFDADGNIVD 197 (255)
T ss_dssp HHTTEEEEETTEEEETTS-EEE
T ss_pred HHCCcEEEhhchhhcCCCCCcc
Confidence 5678999999999999999876
No 18
>COG0133 TrpB Tryptophan synthase beta chain [Amino acid transport and metabolism]
Probab=33.39 E-value=90 Score=30.11 Aligned_cols=59 Identities=17% Similarity=0.305 Sum_probs=42.2
Q ss_pred CCCCHHHHHhHHHHHHHHhccCceeeeeeccccCCCCCCCCcc---HHHHHHHHHHHHhhHHHHHHhcCCCC
Q psy15661 67 DDISGTEAIELNNWLDFYRTNYVYEGHLIGRFFNTNGSPTRHW---HEFQLKLKEAEADSEEVLQEKLKYPP 135 (217)
Q Consensus 67 ~~Ls~~e~~~L~~W~~fy~~kY~~VG~Li~~~yd~~G~pt~~~---~~~~~~~~~~~~~~~~~~~~~~~~P~ 135 (217)
..|...--++|++|+..++..|.++|.++| |-++. ++++..|-+ +.|+|..+..-+.|.
T Consensus 164 ~TLKDA~neAlRdWvtn~~~ThY~iGsa~G--------PHPyP~iVRdFQ~vIG~--E~k~Qile~egrlPD 225 (396)
T COG0133 164 GTLKDAINEALRDWVTNVEDTHYLIGSAAG--------PHPYPTIVRDFQSVIGE--EAKAQILEKEGRLPD 225 (396)
T ss_pred chHHHHHHHHHHHHHhccccceEEEeeccC--------CCCchHHHHHHHHHHhH--HHHHHHHHHhCCCCC
Confidence 466777778999999999999999999998 33333 556666544 444454555568885
No 19
>PF14427 Pput2613-deam: Pput_2613-like deaminase
Probab=32.96 E-value=32 Score=28.01 Aligned_cols=36 Identities=33% Similarity=0.717 Sum_probs=21.3
Q ss_pred cCCCCCcc-----ee-cCCCCceEEecCCCCCccccc-ccccC
Q psy15661 131 LKYPPCNV-----VW-SQDEGTRVWCSTKSGGIERDW-TGVPR 166 (217)
Q Consensus 131 ~~~P~CN~-----~w-s~~~G~~vWCs~~SGGi~R~W-~GvPR 166 (217)
-.|||||+ +| ++..|..|==+--+||-.+.| .|-||
T Consensus 73 G~ypPC~~CkG~Mr~~s~~~g~~I~Y~w~~~~~~~~w~~g~~~ 115 (118)
T PF14427_consen 73 GQYPPCNSCKGKMRRASEKSGATIQYTWPNGGGKEEWKAGKKR 115 (118)
T ss_pred eecCCCchhHHHHHHhhhccCcEEEEecCCCCCceeeecCCcc
Confidence 47999996 33 444566654444445446666 55554
No 20
>PF10276 zf-CHCC: Zinc-finger domain; InterPro: IPR019401 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a short conserved zinc-finger domain. It contains the sequence motif Cx8Hx14Cx2C. ; PDB: 2JVM_A 2JRR_A 2JZ8_A.
Probab=32.74 E-value=68 Score=21.30 Aligned_cols=25 Identities=36% Similarity=0.604 Sum_probs=18.0
Q ss_pred CceEEecCCCCCcccccccccCeeecCCCC
Q psy15661 145 GTRVWCSTKSGGIERDWTGVPRKLYQAGAE 174 (217)
Q Consensus 145 G~~vWCs~~SGGi~R~W~GvPRkl~~~g~~ 174 (217)
+.+|+|....|. .|.||-+..-+..
T Consensus 2 ~~~v~CdG~~~~-----lgHPrVyl~l~~~ 26 (40)
T PF10276_consen 2 GRRVSCDGGGGA-----LGHPRVYLNLDDE 26 (40)
T ss_dssp SSEEEEEESSTT-----SCCCCEEEE-TTT
T ss_pred CcEEEeCCCCCC-----CCCCeEEEecCCC
Confidence 578999964333 8999999976553
No 21
>PF12596 Tnp_P_element_C: 87kDa Transposase; InterPro: IPR022242 This domain family is found in eukaryotes, and is typically between 78 and 110 amino acids in length. The family is found in association with PF05485 from PFAM. There are two completely conserved residues (D and G) that may be functionally important. This family is an 87kDa transposase protein which catalyses both the precise and imprecise excision of a nonautonomous P transposable element.
Probab=30.48 E-value=39 Score=27.05 Aligned_cols=29 Identities=17% Similarity=0.322 Sum_probs=23.5
Q ss_pred CCCCHHHHHhHHHHHH-HHhccCceeeeee
Q psy15661 67 DDISGTEAIELNNWLD-FYRTNYVYEGHLI 95 (217)
Q Consensus 67 ~~Ls~~e~~~L~~W~~-fy~~kY~~VG~Li 95 (217)
..+.+.-|+.|..|+. +|+.|||.+|.+.
T Consensus 72 ~e~e~d~l~YiaGyVa~k~~~k~p~L~~~t 101 (106)
T PF12596_consen 72 DEIEEDGLEYIAGYVAKKFRNKYPNLGDYT 101 (106)
T ss_pred chhHHHHHHHHHHHHHHHHHhcCCchhhee
Confidence 3466677888999975 8999999999775
No 22
>PHA02310 hypothetical protein
Probab=27.96 E-value=37 Score=28.15 Aligned_cols=25 Identities=12% Similarity=0.294 Sum_probs=20.5
Q ss_pred CcEEEEEcCEEEecccCCccccCCC
Q psy15661 14 DKLYLVILGHVFDVTKGKNYYKKGE 38 (217)
Q Consensus 14 ~~iylaI~G~VYDVT~g~~~YgpGG 38 (217)
.|=.|..+|++|||.+...+|.-.|
T Consensus 87 agD~lvwnGkry~v~g~~dW~~QDG 111 (130)
T PHA02310 87 AGDQFIWTGRVFQLESQGSWFYQDG 111 (130)
T ss_pred CCCEEEEcCcEEEEccccceeecCC
Confidence 3457889999999999988886655
No 23
>PRK06549 acetyl-CoA carboxylase biotin carboxyl carrier protein subunit; Validated
Probab=25.88 E-value=46 Score=27.20 Aligned_cols=15 Identities=27% Similarity=0.317 Sum_probs=12.6
Q ss_pred cEEEEEcCEEEeccc
Q psy15661 15 KLYLVILGHVFDVTK 29 (217)
Q Consensus 15 ~iylaI~G~VYDVT~ 29 (217)
.+=|-|+|++|||+=
T Consensus 4 ~~~itvng~~y~V~v 18 (130)
T PRK06549 4 KFKITIDGKEYLVEM 18 (130)
T ss_pred eEEEEECCEEEEEEE
Confidence 356889999999985
No 24
>TIGR01252 acetolac_decarb alpha-acetolactate decarboxylase. Puruvate can be fermented to 2,3-butanediol. It is first converted to alpha-acetolactate by alpha-acetolactate synthase, then decarboxylated to acetoin by this enzyme. Acetoin can be reduced in some species to 2,3-butanediol by acetoin reductase.
Probab=25.61 E-value=2.4e+02 Score=25.22 Aligned_cols=86 Identities=15% Similarity=0.271 Sum_probs=47.5
Q ss_pred CCHHHHhcccC--------CCcEEEEEcCEEEecccCCccccCCCceeeccCCccchhcccCCCCCCCCCCCC-CCCCHH
Q psy15661 2 FSKEEIAKYVT--------EDKLYLVILGHVFDVTKGKNYYKKGETYHCFVGRDGTRAFVSGNFTDEGLTEDI-DDISGT 72 (217)
Q Consensus 2 fT~eEL~~ydG--------~~~iylaI~G~VYDVT~g~~~YgpGG~Y~~fAGrDaSraf~tg~f~~~~l~~d~-~~Ls~~ 72 (217)
+|..||.+|-- -..=.|+++|++|-+.+. |.-..... +.+-.|+...|=+....-.+ ..++.+
T Consensus 21 ~t~~~Ll~hGdfGiGTf~~LdGEmiilDG~~Yq~~sd-------G~v~~~~~-~~~~PFA~vt~f~~~~~~~~~~~~~~~ 92 (232)
T TIGR01252 21 TTLKELLEHGDFGIGTLNGLDGELIVLDGKAYQIKSD-------GKAQELIE-EDKTPFAVTTFFDADLKFKITENMDRE 92 (232)
T ss_pred ccHHHHHhCCCceeECccCCceeEEEECCEEEEEcCC-------CcEEECCc-cccCCeEEEEecCCcEEEecCCcCCHH
Confidence 67888887653 123359999999999762 22222222 55666666555333322233 234444
Q ss_pred HHHhHHHHHHHH--hccCceeeeeeccc
Q psy15661 73 EAIELNNWLDFY--RTNYVYEGHLIGRF 98 (217)
Q Consensus 73 e~~~L~~W~~fy--~~kY~~VG~Li~~~ 98 (217)
++ ..+.+.. .++..+.=++.|+|
T Consensus 93 ~l---~~~l~~~~p~~N~f~Airi~G~F 117 (232)
T TIGR01252 93 QF---EKKIEELFPGKNVFYAIRITGEF 117 (232)
T ss_pred HH---HHHHHHhCCCCccEEEEEEEEEe
Confidence 44 4444433 35666666676665
No 25
>COG0411 LivG ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism]
Probab=24.68 E-value=1.1e+02 Score=28.01 Aligned_cols=55 Identities=11% Similarity=0.167 Sum_probs=41.5
Q ss_pred EEEEcCEEEecccCCcc--ccCCCceeeccCCccchhcccCCCCCCCC-----CCCCCCCCHHHHHh
Q psy15661 17 YLVILGHVFDVTKGKNY--YKKGETYHCFVGRDGTRAFVSGNFTDEGL-----TEDIDDISGTEAIE 76 (217)
Q Consensus 17 ylaI~G~VYDVT~g~~~--YgpGG~Y~~fAGrDaSraf~tg~f~~~~l-----~~d~~~Ls~~e~~~ 76 (217)
+.|+++.=|+|..|..+ -||+| |||-.--.+.+|-+.++.= -.|+++|++.++..
T Consensus 17 l~Al~~Vsl~v~~Gei~~LIGPNG-----AGKTTlfNlitG~~~P~~G~v~~~G~~it~l~p~~iar 78 (250)
T COG0411 17 LTAVNDVSLEVRPGEIVGLIGPNG-----AGKTTLFNLITGFYKPSSGTVIFRGRDITGLPPHRIAR 78 (250)
T ss_pred EEEEeceeEEEcCCeEEEEECCCC-----CCceeeeeeecccccCCCceEEECCcccCCCCHHHHHh
Confidence 68999999999988543 28887 6787777888888877531 25889999888653
No 26
>PF09356 Phage_BR0599: Phage conserved hypothetical protein BR0599; InterPro: IPR018964 This entry describes the C-terminal region of a family of proteins found almost exclusively in phage or in prophage regions of bacterial genomes, including the phage-like Rhodobacter capsulatus (Rhodopseudomonas capsulata) gene transfer agent, which packages DNA. An apparent exception is Wolbachia pipientis wMel, a bacterial endosymbiont of the fruit fly, which has several candidate phage-related genes physically separate from obvious prophage regions.
Probab=24.66 E-value=27 Score=26.08 Aligned_cols=17 Identities=24% Similarity=0.595 Sum_probs=15.4
Q ss_pred CceecCCCCcCCCcccc
Q psy15661 198 NLEAYENCDPKATSCYW 214 (217)
Q Consensus 198 ~l~~Y~gC~~~a~~C~~ 214 (217)
.+..|+||+.+..+|.-
T Consensus 46 ~v~l~~GCDkt~~tC~~ 62 (80)
T PF09356_consen 46 TVTLYPGCDKTFATCRA 62 (80)
T ss_pred EEEEEeCCCCCHHHHHH
Confidence 78999999999999954
No 27
>PF01920 Prefoldin_2: Prefoldin subunit; InterPro: IPR002777 Prefoldin (PFD) is a chaperone that interacts exclusively with type II chaperonins, hetero-oligomers lacking an obligate co-chaperonin that are found only in eukaryotes (chaperonin-containing T-complex polypeptide-1 (CCT)) and archaea. Eukaryotic PFD is a multi-subunit complex containing six polypeptides in the molecular mass range of 14-23 kDa. In archaea, on the other hand, PFD is composed of two types of subunits, two alpha and four beta. The six subunits associate to form two back-to-back up-and-down eight-stranded barrels, from which hang six coiled coils. Each subunit contributes one (beta subunits) or two (alpha subunits) beta hairpin turns to the barrels. The coiled coils are formed by the N and C termini of an individual subunit. Overall, this unique arrangement resembles a jellyfish. The eukaryotic PFD hexamer is composed of six different subunits; however, these can be grouped into two alpha-like (PFD3 and -5) and four beta-like (PFD1, -2, -4, and -6) subunits based on amino acid sequence similarity with their archaeal counterparts. Eukaryotic PFD has a six-legged structure similar to that seen in the archaeal homologue [, ]. This family contains the archaeal beta subunit, eukaryotic prefoldin subunits 1, 2, 4 and 6. Eukaryotic PFD has been shown to bind both actin and tubulin co-translationally. The chaperone then delivers the target protein to CCT, interacting with the chaperonin through the tips of the coiled coils. No authentic target proteins of any archaeal PFD have been identified, to date.; GO: 0051082 unfolded protein binding, 0006457 protein folding, 0016272 prefoldin complex; PDB: 2ZDI_B 3AEI_B 2ZQM_A 1FXK_A.
Probab=24.27 E-value=57 Score=24.13 Aligned_cols=21 Identities=24% Similarity=0.289 Sum_probs=15.5
Q ss_pred CHHHHhcccCCCcEEEEEcCE
Q psy15661 3 SKEEIAKYVTEDKLYLVILGH 23 (217)
Q Consensus 3 T~eEL~~ydG~~~iylaI~G~ 23 (217)
|.+||..-+.+.++|..|.+.
T Consensus 34 ~~~eL~~l~~~~~~y~~vG~~ 54 (106)
T PF01920_consen 34 TLEELEKLDDDRKVYKSVGKM 54 (106)
T ss_dssp HHHHHHTSSTT-EEEEEETTE
T ss_pred HHHHHHhCCCcchhHHHHhHH
Confidence 578888888888899988443
No 28
>PF06881 Elongin_A: RNA polymerase II transcription factor SIII (Elongin) subunit A; InterPro: IPR010684 This family represents a conserved region within RNA polymerase II transcription factor SIII (Elongin) subunit A. In mammals, the Elongin complex activates elongation by RNA polymerase II by suppressing transient pausing of the polymerase at many sites within transcription units. Elongin is a heterotrimer composed of A, B, and C subunits of 110, 18, and 15 kilodaltons, respectively. Subunit A has been shown to function as the transcriptionally active component of Elongin [].; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus, 0016021 integral to membrane
Probab=22.53 E-value=2.8e+02 Score=21.31 Aligned_cols=24 Identities=8% Similarity=0.365 Sum_probs=17.5
Q ss_pred CCCCHHHHHhHHH------------HHHHHhccCce
Q psy15661 67 DDISGTEAIELNN------------WLDFYRTNYVY 90 (217)
Q Consensus 67 ~~Ls~~e~~~L~~------------W~~fy~~kY~~ 90 (217)
..++++||..|.. |..|+.+.||-
T Consensus 17 ~~~~~~QL~~iE~~np~l~~~tdeLW~~~i~rdFp~ 52 (109)
T PF06881_consen 17 EKCSPEQLRRIEDNNPHLIEDTDELWKKLIKRDFPE 52 (109)
T ss_pred ccCCHHHHHHHHHhCCCcchhhHHHHHHHHHhHCcC
Confidence 4456666655544 99999999987
No 29
>COG2390 DeoR Transcriptional regulator, contains sigma factor-related N-terminal domain [Transcription]
Probab=21.52 E-value=92 Score=29.09 Aligned_cols=23 Identities=35% Similarity=0.631 Sum_probs=19.4
Q ss_pred cCceeeeeeccccCCCCCCCCcc
Q psy15661 87 NYVYEGHLIGRFFNTNGSPTRHW 109 (217)
Q Consensus 87 kY~~VG~Li~~~yd~~G~pt~~~ 109 (217)
+=-.||-+.++|||.+|+|....
T Consensus 240 ~~gaVGdi~g~ffD~~G~~~~~~ 262 (321)
T COG2390 240 AKGAVGDILGRFFDANGQPVDTP 262 (321)
T ss_pred hCCcceecccceecCCCCCcccc
Confidence 45689999999999999887654
No 30
>KOG0173|consensus
Probab=21.30 E-value=97 Score=28.57 Aligned_cols=34 Identities=21% Similarity=0.304 Sum_probs=26.3
Q ss_pred HHHhcccCCCcEEEEEcCEEEecccCCccc--cCCCcee
Q psy15661 5 EEIAKYVTEDKLYLVILGHVFDVTKGKNYY--KKGETYH 41 (217)
Q Consensus 5 eEL~~ydG~~~iylaI~G~VYDVT~g~~~Y--gpGG~Y~ 41 (217)
+-|-+|+|.-..+|.|-|. |.| |.+.| +|.|++.
T Consensus 122 Q~LFrYqG~IgA~LiiGGv--D~T-GpHLy~i~phGStd 157 (271)
T KOG0173|consen 122 QHLFRYQGHIGAALILGGV--DPT-GPHLYSIHPHGSTD 157 (271)
T ss_pred HHHHHhcCcccceeEEccc--cCC-CCceEEEcCCCCcC
Confidence 4567899977789999885 776 67778 7888865
No 31
>TIGR02491 NrdG anaerobic ribonucleoside-triphosphate reductase activating protein. This enzyme is a member of the radical-SAM family (pfam04055) and utilizes S-adenosyl methionine, an iron-sulfur cluster and a reductant (dihydroflavodoxin ) to produce a glycine-centered radical in the class III (anaerobic) ribonucleotide triphosphate reductase (NrdD, TIGR02487). The two components form an alpha-2/beta-2 heterodimer.
Probab=20.04 E-value=4.6e+02 Score=21.15 Aligned_cols=85 Identities=14% Similarity=0.082 Sum_probs=47.4
Q ss_pred EEecccCCccccCCCceee-ccCCccchhcccCCCCCCCCCC-CCCCCCHHHHHhHHHHHHHHhccCceeeeeeccccCC
Q psy15661 24 VFDVTKGKNYYKKGETYHC-FVGRDGTRAFVSGNFTDEGLTE-DIDDISGTEAIELNNWLDFYRTNYVYEGHLIGRFFNT 101 (217)
Q Consensus 24 VYDVT~g~~~YgpGG~Y~~-fAGrDaSraf~tg~f~~~~l~~-d~~~Ls~~e~~~L~~W~~fy~~kY~~VG~Li~~~yd~ 101 (217)
|+++-+....-|||=.... ++|.+. --.+++.++.... .-..++.++++.|-++...+ +.++.|.= .
T Consensus 2 i~~i~~~s~~dG~G~r~~if~~gCnl---~C~~C~n~~~~~~~~g~~~~~~~~~~i~~~l~~~----~~~~gVt~----s 70 (154)
T TIGR02491 2 YMNIKPDDIVNGEGIRVSLFVAGCKH---HCEGCFNKETWNFNGGKEFTEALEKEIIRDLNDN----PLIDGLTL----S 70 (154)
T ss_pred cccceECceecCCCcEEEEEECCCCC---CCcCCCcccccCCCCCCcCCHHHHHHHHHHHHhc----CCcCeEEE----e
Confidence 3444444445688854443 466653 2456776654322 23568888887777766433 23343332 5
Q ss_pred CCCCCCcc--HHHHHHHHHH
Q psy15661 102 NGSPTRHW--HEFQLKLKEA 119 (217)
Q Consensus 102 ~G~pt~~~--~~~~~~~~~~ 119 (217)
.|+|+... ..+.+.++.+
T Consensus 71 GGEPllq~~~~~l~~ll~~~ 90 (154)
T TIGR02491 71 GGDPLYPRNVEELIELVKKI 90 (154)
T ss_pred ChhhCCCCCHHHHHHHHHHH
Confidence 69999754 5555555544
Done!