Query psy15661
Match_columns 217
No_of_seqs 224 out of 768
Neff 4.6
Searched_HMMs 29240
Date Fri Aug 16 18:23:19 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy15661.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/15661hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1j03_A Putative steroid bindin 100.0 2.2E-35 7.5E-40 228.7 8.0 95 1-95 4-101 (102)
2 1x3x_A Cytochrome B5; hemoprot 99.4 1.4E-13 4.9E-18 101.7 3.5 53 1-54 5-60 (82)
3 1cyo_A Cytochrome B5; electron 99.4 1.3E-13 4.4E-18 104.4 3.1 53 1-54 6-60 (93)
4 1cxy_A Cytochrome B5; helix, b 99.4 3.2E-13 1.1E-17 101.5 4.2 54 1-55 9-64 (90)
5 2ibj_A Cytochrome B5, CYTB5; F 99.4 1.9E-13 6.4E-18 102.1 2.7 53 1-54 8-62 (88)
6 3ner_A Cytochrome B5 type B; h 99.3 3.8E-13 1.3E-17 101.8 3.2 53 1-54 11-65 (92)
7 3lf5_A Cytochrome B5 reductase 99.3 3.1E-13 1.1E-17 101.6 2.3 53 1-54 7-61 (88)
8 1hko_A Cytochrome B5; electron 99.3 6.5E-13 2.2E-17 102.8 1.8 53 1-54 10-64 (104)
9 2keo_A Probable E3 ubiquitin-p 99.2 7.2E-13 2.4E-17 104.0 -0.7 53 1-54 25-79 (112)
10 1mj4_A Sulfite oxidase; cytoch 99.0 4.3E-11 1.5E-15 88.4 1.8 52 1-54 6-60 (82)
11 1kbi_A Cytochrome B2, L-LCR; f 98.8 1.6E-09 5.6E-14 102.9 4.6 53 1-54 10-64 (511)
12 1sox_A Sulfite oxidase; oxidor 98.4 1.4E-07 4.6E-12 89.1 3.6 51 1-53 6-59 (466)
13 1wvl_A DNA-binding proteins 7A 37.7 12 0.00041 26.9 1.3 40 86-125 21-67 (80)
14 2xiw_A DNA-binding protein 7D; 37.1 10 0.00034 27.4 0.8 39 86-124 32-77 (79)
15 2g2d_A ATP:cobalamin adenosylt 30.6 78 0.0027 26.2 5.3 51 68-122 91-142 (193)
16 1wy1_A Hypothetical protein PH 27.9 65 0.0022 26.2 4.3 50 68-122 78-128 (172)
17 2ah6_A BH1595, unknown conserv 27.8 65 0.0022 27.1 4.4 51 68-122 97-148 (208)
18 1wvt_A Hypothetical protein ST 27.7 67 0.0023 26.2 4.4 51 68-122 74-125 (172)
19 3tr4_A Inorganic pyrophosphata 25.9 86 0.0029 25.8 4.8 31 64-94 123-157 (178)
20 1rty_A YVQK protein; all alpha 25.7 77 0.0026 26.3 4.5 51 68-122 84-135 (193)
21 3efb_A Probable SOR-operon reg 25.0 37 0.0013 28.7 2.4 31 69-107 178-208 (266)
22 3nze_A Putative transcriptiona 24.5 43 0.0015 28.4 2.8 33 67-107 173-205 (267)
23 1woz_A 177AA long conserved hy 23.9 90 0.0031 25.5 4.5 51 68-122 76-127 (177)
24 3ci3_A Cobalamin adenosyltrans 23.1 80 0.0027 26.2 4.1 50 68-121 92-142 (194)
25 2nt8_A Cobalamin adenosyltrans 22.5 81 0.0028 26.9 4.1 50 68-121 121-171 (223)
26 1nog_A Conserved hypothetical 21.9 73 0.0025 26.1 3.6 51 68-122 77-128 (177)
27 1z8u_A Alpha-hemoglobin stabil 20.4 49 0.0017 25.1 2.0 20 69-88 32-52 (102)
No 1
>1j03_A Putative steroid binding protein; alpha and beta, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: d.120.1.2 PDB: 1t0g_A
Probab=100.00 E-value=2.2e-35 Score=228.72 Aligned_cols=95 Identities=29% Similarity=0.647 Sum_probs=91.5
Q ss_pred CCCHHHHhcccC-C--CcEEEEEcCEEEecccCCccccCCCceeeccCCccchhcccCCCCCCCCCCCCCCCCHHHHHhH
Q psy15661 1 MFSKEEIAKYVT-E--DKLYLVILGHVFDVTKGKNYYKKGETYHCFVGRDGTRAFVSGNFTDEGLTEDIDDISGTEAIEL 77 (217)
Q Consensus 1 lfT~eEL~~ydG-~--~~iylaI~G~VYDVT~g~~~YgpGG~Y~~fAGrDaSraf~tg~f~~~~l~~d~~~Ls~~e~~~L 77 (217)
.||++||++||| + ++|||||+|+|||||+++.||||||+|+.|||+|||++|++++|+++.+++|+++|+++|++.|
T Consensus 4 ~~T~~El~~~ng~~~~~~~~vaI~G~VYDVT~~~~~~hPGG~~~~~AG~DaT~~f~~~~~~~~~l~~dl~~L~~~e~~~l 83 (102)
T 1j03_A 4 EFTAEQLSQYNGTDESKPIYVAIKGRVFDVTTGKSFYGSGGDYSMFAGKDASRALGKMSKNEEDVSPSLEGLTEKEINTL 83 (102)
T ss_dssp CCCHHHHTTCBSCSSSCCBEEEETTEEEECGGGHHHHSSSSTTTTTTTSBCHHHHHHTCCCSSSCCSSCSSCCHHHHHHH
T ss_pred ccCHHHHHHhcCCCCCCCEEEEECCEEEECCCCccccCCCCcccccccchHHHHHHHcCCChhhccCcccCCCHHHHHHH
Confidence 589999999999 3 4899999999999999988999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhccCceeeeee
Q psy15661 78 NNWLDFYRTNYVYEGHLI 95 (217)
Q Consensus 78 ~~W~~fy~~kY~~VG~Li 95 (217)
++|.+||++||++||+|+
T Consensus 84 ~~W~~~f~~kY~~VG~l~ 101 (102)
T 1j03_A 84 NDWETKFEAKYPVVGRVV 101 (102)
T ss_dssp HHHHHHHHTTSCEEECCC
T ss_pred HHHHHHHhccCCeeeEEe
Confidence 999999999999999997
No 2
>1x3x_A Cytochrome B5; hemoprotein, porcine parasitic namatode, electron transport; HET: HEM; 1.80A {Ascaris suum}
Probab=99.39 E-value=1.4e-13 Score=101.66 Aligned_cols=53 Identities=28% Similarity=0.383 Sum_probs=46.1
Q ss_pred CCCHHHHhcccCCCcEEEEEcCEEEecccCCccccCCC-ceeeccCCccchh--ccc
Q psy15661 1 MFSKEEIAKYVTEDKLYLVILGHVFDVTKGKNYYKKGE-TYHCFVGRDGTRA--FVS 54 (217)
Q Consensus 1 lfT~eEL~~ydG~~~iylaI~G~VYDVT~g~~~YgpGG-~Y~~fAGrDaSra--f~t 54 (217)
+||.+||++||+..++||+|+|+|||||+... +|||| .+..+||+|||++ |..
T Consensus 5 ~~t~~ev~~h~~~~~~wv~i~g~VYDvT~f~~-~HPGG~~i~~~aG~D~T~~~~F~~ 60 (82)
T 1x3x_A 5 KYTKEEVAKHNTQNDLWIIYDGEVHDMTSFYK-EHPGGKVILNKAGQDATSVLKTLA 60 (82)
T ss_dssp EECHHHHHTCEETTEEEEEETTEEEECGGGGG-GCTTGGGGGGGTTSBCHHHHHHSH
T ss_pred ccCHHHHHhhCCCCCEEEEECCEEEECCcchh-hCcChhhhhhhCCCCCchhhhhhc
Confidence 48999999999977899999999999998654 79999 4558999999999 743
No 3
>1cyo_A Cytochrome B5; electron transport; HET: HEM; 1.50A {Bos taurus} SCOP: d.120.1.1 PDB: 1bfx_A* 1i87_A 1i8c_A 1iet_A 1ieu_A 1do9_A* 1aqa_A* 1aw3_A* 1axx_A* 1b5a_A* 1b5b_A* 1blv_A* 1mny_A* 2axx_A* 1ib7_A* 1jex_A* 1ehb_A* 1nx7_A* 1u9u_A* 1m20_A* ...
Probab=99.38 E-value=1.3e-13 Score=104.41 Aligned_cols=53 Identities=26% Similarity=0.342 Sum_probs=47.1
Q ss_pred CCCHHHHhcccCCCcEEEEEcCEEEecccCCccccCCCc--eeeccCCccchhccc
Q psy15661 1 MFSKEEIAKYVTEDKLYLVILGHVFDVTKGKNYYKKGET--YHCFVGRDGTRAFVS 54 (217)
Q Consensus 1 lfT~eEL~~ydG~~~iylaI~G~VYDVT~g~~~YgpGG~--Y~~fAGrDaSraf~t 54 (217)
+||.+||++||+..++||+|+|+|||||.... +||||. ...+||+|||.+|..
T Consensus 6 ~~t~~Ev~~h~~~~~~wv~i~g~VYDvT~f~~-~HPGG~~~i~~~aG~DaT~~f~~ 60 (93)
T 1cyo_A 6 YYTLEEIQKHNNSKSTWLILHYKVYDLTKFLE-EHPGGEEVLREQAGGDATENFED 60 (93)
T ss_dssp EECHHHHTTCEETTEEEEEETTEEEECTTTTT-TCTTCSHHHHHHTTSBCHHHHHH
T ss_pred ccCHHHHHhhCCCCCEEEEECCEEEECCCcch-hCcChHHHHHHhcCccchHHHHH
Confidence 48999999999977899999999999998654 799997 457999999999965
No 4
>1cxy_A Cytochrome B5; helix, beta-strand, electron transport; HET: HEM; 1.65A {Ectothiorhodospira shaposhnikovii} SCOP: d.120.1.1
Probab=99.36 E-value=3.2e-13 Score=101.49 Aligned_cols=54 Identities=24% Similarity=0.449 Sum_probs=47.7
Q ss_pred CCCHHHHhcccCCCcEEEEEcCEEEecccCCccccCCCc--eeeccCCccchhcccC
Q psy15661 1 MFSKEEIAKYVTEDKLYLVILGHVFDVTKGKNYYKKGET--YHCFVGRDGTRAFVSG 55 (217)
Q Consensus 1 lfT~eEL~~ydG~~~iylaI~G~VYDVT~g~~~YgpGG~--Y~~fAGrDaSraf~tg 55 (217)
+||.+||++|++..++||+|+|+|||||.... +||||. +..+||+|||.+|..+
T Consensus 9 ~~t~~Ev~~h~~~~~~wv~i~g~VYDvT~f~~-~HPGG~~~i~~~aG~DaT~~f~~~ 64 (90)
T 1cxy_A 9 VFTLEQVAEHHSPDDCWMAIHGKVYDLTPYVP-NHPGPAGMMLVWCGQESTEAWETK 64 (90)
T ss_dssp BCCHHHHTTCEETTEEEEEETTEEEECTTTGG-GCCSSTTTTGGGTTSBCHHHHHHT
T ss_pred CcCHHHHHHhcCCCCEEEEECCEEEECccchh-hCcChHHHHHHHCCcchhHHHhhc
Confidence 48999999999977899999999999998643 799996 5689999999999753
No 5
>2ibj_A Cytochrome B5, CYTB5; FLY cytochrome B5, X-RAY diffraction, heme, electron transport; HET: HEM; 1.55A {Musca domestica}
Probab=99.36 E-value=1.9e-13 Score=102.11 Aligned_cols=53 Identities=34% Similarity=0.449 Sum_probs=46.8
Q ss_pred CCCHHHHhcccCCCcEEEEEcCEEEecccCCccccCCCce--eeccCCccchhccc
Q psy15661 1 MFSKEEIAKYVTEDKLYLVILGHVFDVTKGKNYYKKGETY--HCFVGRDGTRAFVS 54 (217)
Q Consensus 1 lfT~eEL~~ydG~~~iylaI~G~VYDVT~g~~~YgpGG~Y--~~fAGrDaSraf~t 54 (217)
+||.+||++||+..++||+|+|+|||||.... +||||.. ..+||+|||.+|..
T Consensus 8 ~~t~~ev~~h~~~~~~wv~i~g~VYDvT~f~~-~HPGG~~~i~~~aG~DaT~~f~~ 62 (88)
T 2ibj_A 8 YFTRAEVAKNNTKDKNWFIIHNNVYDVTAFLN-EHPGGEEVLIEQAGKDATEHFED 62 (88)
T ss_dssp EECHHHHHTSEETTEEEEEETTEEEECGGGTT-TCTTCSHHHHTTTTEECHHHHHH
T ss_pred ccCHHHHHHhCCCCCEEEEECCEEEECCcchh-hCcCHHHHHHHhCCCcchHHHHH
Confidence 48999999999988899999999999998643 7999974 47999999999964
No 6
>3ner_A Cytochrome B5 type B; heme, electron transport; HET: HEM; 1.45A {Homo sapiens} SCOP: d.120.1.1 PDB: 1awp_A* 3mus_A* 1b5m_A* 1eue_A* 1icc_A* 1lj0_A* 2i89_A*
Probab=99.34 E-value=3.8e-13 Score=101.84 Aligned_cols=53 Identities=32% Similarity=0.421 Sum_probs=47.0
Q ss_pred CCCHHHHhcccCCCcEEEEEcCEEEecccCCccccCCCc--eeeccCCccchhccc
Q psy15661 1 MFSKEEIAKYVTEDKLYLVILGHVFDVTKGKNYYKKGET--YHCFVGRDGTRAFVS 54 (217)
Q Consensus 1 lfT~eEL~~ydG~~~iylaI~G~VYDVT~g~~~YgpGG~--Y~~fAGrDaSraf~t 54 (217)
+||++||++||+..++||+|+|+|||||... .+||||. ...+||+|||.+|..
T Consensus 11 ~~t~~Ev~~h~~~~~~wv~i~g~VYDvT~f~-~~HPGG~~~l~~~aG~DaT~~F~~ 65 (92)
T 3ner_A 11 YYRLEEVAKRNSLKELWLVIHGRVYDVTRFL-NEHPGGEEVLLEQAGVDASESFED 65 (92)
T ss_dssp EECHHHHTTCEETTEEEEEETTEEEECGGGT-TTCTTCSHHHHTTTTSBCHHHHHH
T ss_pred eeCHHHHHhhCCCCCEEEEECCEEEEccccc-ccCCCHHHHHHHhcCCcchHHHHH
Confidence 4899999999998889999999999999864 3799997 457999999999965
No 7
>3lf5_A Cytochrome B5 reductase 4; NCB5OR, electron transfer, redox, heme, endoplasmic reticulu flavoprotein, iron, metal-binding, NAD, oxidoreductase; HET: HEM; 1.25A {Homo sapiens}
Probab=99.33 E-value=3.1e-13 Score=101.56 Aligned_cols=53 Identities=28% Similarity=0.450 Sum_probs=47.2
Q ss_pred CCCHHHHhcccCCCcEEEEEcCEEEecccCCccccCCCc--eeeccCCccchhccc
Q psy15661 1 MFSKEEIAKYVTEDKLYLVILGHVFDVTKGKNYYKKGET--YHCFVGRDGTRAFVS 54 (217)
Q Consensus 1 lfT~eEL~~ydG~~~iylaI~G~VYDVT~g~~~YgpGG~--Y~~fAGrDaSraf~t 54 (217)
+||.+||++||+..++||+|+|+|||||+... +||||. +..+||+|||.+|..
T Consensus 7 ~~t~~Ev~~h~~~~~~wv~i~g~VYDvT~f~~-~HPGG~~~l~~~aG~DaT~~F~~ 61 (88)
T 3lf5_A 7 EVTEEELKKHNKKDDCWICIRGFVYNVSPYME-YHPGGEDELMRAAGSDGTELFDQ 61 (88)
T ss_dssp EECHHHHHHCEETTEEEEEETTEEEECGGGTT-TCTTCHHHHHTTTTEECHHHHHH
T ss_pred EeCHHHHHhhCCCCCEEEEECCEEEECccchh-hCcChhhhhhhcCCCcchHHHHH
Confidence 48999999999988899999999999998654 699997 568999999999954
No 8
>1hko_A Cytochrome B5; electron transfer protein, heme, electron transport; HET: HEM; NMR {Bos taurus} SCOP: d.120.1.1 PDB: 2i96_A*
Probab=99.28 E-value=6.5e-13 Score=102.77 Aligned_cols=53 Identities=26% Similarity=0.325 Sum_probs=46.6
Q ss_pred CCCHHHHhcccCCCcEEEEEcCEEEecccCCccccCCCce--eeccCCccchhccc
Q psy15661 1 MFSKEEIAKYVTEDKLYLVILGHVFDVTKGKNYYKKGETY--HCFVGRDGTRAFVS 54 (217)
Q Consensus 1 lfT~eEL~~ydG~~~iylaI~G~VYDVT~g~~~YgpGG~Y--~~fAGrDaSraf~t 54 (217)
+||.+||++||+..++||+|+|+|||||.... +||||.. ..+||+|||.+|..
T Consensus 10 ~~t~~Ev~~h~~~~~~wv~i~g~VYDvT~f~~-~HPGG~~~i~~~aGkDaT~~F~~ 64 (104)
T 1hko_A 10 YYTLEEIQKHNNSKSTWLILHYKVYDLTKFLE-EHPGGEEVLREQAGGDATENFED 64 (104)
T ss_dssp EECHHHHHHCBSSSSBEEEETTEEEEHHHHSS-SSSSCSHHHHTTCSEECHHHHTT
T ss_pred ccCHHHHHHhcCCCCEEEEECCEEEECCcchh-hCcChHHHHHHhcCccchHHHHH
Confidence 48999999999977899999999999998643 7999974 47999999999954
No 9
>2keo_A Probable E3 ubiquitin-protein ligase HERC2; protein of unknown function, HERC2 cytochrome domain, ligase binding, phosphoprotein; NMR {Homo sapiens}
Probab=99.22 E-value=7.2e-13 Score=104.04 Aligned_cols=53 Identities=19% Similarity=0.308 Sum_probs=46.7
Q ss_pred CCCHHHHhcccCCCcEEEEEcCEEEecccCCccccCCCc--eeeccCCccchhccc
Q psy15661 1 MFSKEEIAKYVTEDKLYLVILGHVFDVTKGKNYYKKGET--YHCFVGRDGTRAFVS 54 (217)
Q Consensus 1 lfT~eEL~~ydG~~~iylaI~G~VYDVT~g~~~YgpGG~--Y~~fAGrDaSraf~t 54 (217)
+||.+||++||+..++||+|+|+|||||.... ++|||. +..+||+|||.+|..
T Consensus 25 ~~t~~Ev~~h~~~~d~wvvi~G~VYDVT~fl~-~HPGG~~~l~~~aGkDaT~~F~~ 79 (112)
T 2keo_A 25 LVRIADLENHNNDGGFWTVIDGKVYDIKDFQT-QSLTENSILAQFAGEDPVVALEA 79 (112)
T ss_dssp EECHHHHHHHHHHTCCEEEETTEEEEHHHHHH-HHTSTTSTTGGGTTSCHHHHHHH
T ss_pred ccCHHHHHHhcCCCCEEEEECCEEEECCcchh-hCCCchhhhhhhCCccchHHHhH
Confidence 48999999999966799999999999998543 699997 568999999999966
No 10
>1mj4_A Sulfite oxidase; cytochrome B5, heme, oxidoreductase; HET: HEM; 1.20A {Homo sapiens} SCOP: d.120.1.1
Probab=99.04 E-value=4.3e-11 Score=88.40 Aligned_cols=52 Identities=21% Similarity=0.376 Sum_probs=41.6
Q ss_pred CCCHHHHhcccCCC-cEEEEEcCEEEecccCCccccCCCce--eeccCCccchhccc
Q psy15661 1 MFSKEEIAKYVTED-KLYLVILGHVFDVTKGKNYYKKGETY--HCFVGRDGTRAFVS 54 (217)
Q Consensus 1 lfT~eEL~~ydG~~-~iylaI~G~VYDVT~g~~~YgpGG~Y--~~fAGrDaSraf~t 54 (217)
+||.+||++||+.. ++||+|+|+|||||.... .||||.. ..+||+| |.+|..
T Consensus 6 ~~t~~ev~~h~~~~~~~wv~i~g~VYDvt~f~~-~HPGG~~~il~~aG~D-t~~f~~ 60 (82)
T 1mj4_A 6 IYTKEEVSSHTSPETGIWVTLGSEVFDVTEFVD-LHPGGPSKLMLAAGGP-LEPFWA 60 (82)
T ss_dssp BCCCC-CTTCEETTTEEEEEETTEEEECTTTGG-GSTTCHHHHHTTTTSB-SHHHHT
T ss_pred ccCHHHHHHhcCCCCCeEEEECCEEEEchHHHH-hCCCHhHHHHHHcCCC-hHHHHh
Confidence 48999999999944 699999999999998643 7999953 3599999 457743
No 11
>1kbi_A Cytochrome B2, L-LCR; flavocytochrome B2, electron transfer, oxidoreductase; HET: HEM FMN; 2.30A {Saccharomyces cerevisiae} SCOP: c.1.4.1 d.120.1.1 PDB: 1fcb_A* 1lco_A* 1ldc_A* 1sze_A* 2oz0_A* 1szf_A* 1szg_A* 1ltd_A* 1kbj_A* 1qcw_A* 3ks0_A*
Probab=98.83 E-value=1.6e-09 Score=102.86 Aligned_cols=53 Identities=30% Similarity=0.332 Sum_probs=46.8
Q ss_pred CCCHHHHhcccCCCcEEEEEcCEEEecccCCccccCCCce--eeccCCccchhccc
Q psy15661 1 MFSKEEIAKYVTEDKLYLVILGHVFDVTKGKNYYKKGETY--HCFVGRDGTRAFVS 54 (217)
Q Consensus 1 lfT~eEL~~ydG~~~iylaI~G~VYDVT~g~~~YgpGG~Y--~~fAGrDaSraf~t 54 (217)
+||.+||++||+..++||+|+|+|||||... .+||||.. ..+||+|||.+|..
T Consensus 10 ~~t~~ev~~h~~~~~~wv~i~g~VYDvt~f~-~~HPGG~~~i~~~aG~DaT~~f~~ 64 (511)
T 1kbi_A 10 KISPAEVAKHNKPDDCWVVINGYVYDLTRFL-PNHPGGQDVIKFNAGKDVTAIFEP 64 (511)
T ss_dssp CBCTTHHHHCEETTEEEEEETTEEEECTTTG-GGCTTCHHHHHTTTTSBCHHHHGG
T ss_pred ccCHHHHHHhCCCCCEEEEECCEEEECCcch-hhCcChHHHHHHHcCcchhhhhhh
Confidence 5899999999997789999999999999864 37999974 46999999999965
No 12
>1sox_A Sulfite oxidase; oxidoreductase, sulfite oxidation; HET: MTE HEM EPE; 1.90A {Gallus gallus} SCOP: b.1.18.6 d.120.1.1 d.176.1.1 PDB: 3hc2_A* 3hbq_A* 3hbg_A* 3hbp_A* 3r18_A* 3r19_A*
Probab=98.38 E-value=1.4e-07 Score=89.12 Aligned_cols=51 Identities=20% Similarity=0.279 Sum_probs=43.3
Q ss_pred CCCHHHHhcccCCCc-EEEEEcCEEEecccCCccccCCC--ceeeccCCccchhcc
Q psy15661 1 MFSKEEIAKYVTEDK-LYLVILGHVFDVTKGKNYYKKGE--TYHCFVGRDGTRAFV 53 (217)
Q Consensus 1 lfT~eEL~~ydG~~~-iylaI~G~VYDVT~g~~~YgpGG--~Y~~fAGrDaSraf~ 53 (217)
+||.+||++||.... +||+|+|+|||||+.. ..|||| ....+||+| |.+|-
T Consensus 6 ~~t~~Ev~~H~~~~d~~Wvii~g~VYDvT~fl-~~HPGG~~~il~~aG~D-T~~f~ 59 (466)
T 1sox_A 6 EYTREEVGRHRSPEERVWVTHGTDVFDVTDFV-ELHPGGPDKILLAAGGA-LEPFW 59 (466)
T ss_dssp EECHHHHTTCEETTTEEEEEETTEEEECTTTT-TTSTTCHHHHGGGTTSB-SHHHH
T ss_pred eeCHHHHHHhcCCCCceEEEECCEEEechHhH-hhCcCCcccchhhcCCc-ccccc
Confidence 489999999999555 9999999999999864 359999 355789999 88884
No 13
>1wvl_A DNA-binding proteins 7A/7B/7D, GCN4; leucine zipper, protein engineering, synchrotron radiation, thermophIle, X-RAY crystallography; 2.60A {Sulfolobus acidocaldarius} SCOP: b.34.13.1
Probab=37.74 E-value=12 Score=26.93 Aligned_cols=40 Identities=18% Similarity=0.208 Sum_probs=30.3
Q ss_pred ccCceeeeeeccccCCCCC-------CCCccHHHHHHHHHHHHhhHH
Q psy15661 86 TNYVYEGHLIGRFFNTNGS-------PTRHWHEFQLKLKEAEADSEE 125 (217)
Q Consensus 86 ~kY~~VG~Li~~~yd~~G~-------pt~~~~~~~~~~~~~~~~~~~ 125 (217)
++-.-||+++.--||++|. .....+++..++++++++++-
T Consensus 21 kkvwrvgkmvsftyddngktgrgavsekdapkell~ml~k~~~ekkg 67 (80)
T 1wvl_A 21 KKVWRVGKMVSFTYDDNGKTGRGAVSEKDAPKELLDMLARAEREKKG 67 (80)
T ss_dssp EEEEEETTEEEEEEEETTEEEEEEEEGGGCCHHHHHHHHHHHHHHHH
T ss_pred HHHHhhcceEEEEEcCCCcccccccccccChHHHHHHHHHHHHHHhh
Confidence 5677899999866999884 456678888888887776653
No 14
>2xiw_A DNA-binding protein 7D; HET: MSE; 1.50A {Sulfolobus acidocaldarius}
Probab=37.08 E-value=10 Score=27.37 Aligned_cols=39 Identities=21% Similarity=0.261 Sum_probs=30.0
Q ss_pred ccCceeeeeeccccCCCCC-------CCCccHHHHHHHHHHHHhhH
Q psy15661 86 TNYVYEGHLIGRFFNTNGS-------PTRHWHEFQLKLKEAEADSE 124 (217)
Q Consensus 86 ~kY~~VG~Li~~~yd~~G~-------pt~~~~~~~~~~~~~~~~~~ 124 (217)
++-.-||+.+.--||++|. ...+.+++..+|++++++++
T Consensus 32 kkVwrvGKmvsFtYddnGKtGrGaVsEKDAPKELL~Ml~r~erekk 77 (79)
T 2xiw_A 32 RDVSRQGKNVKFLYNDNGKYGAGNVDEKDAPKELLDMLARAEREKK 77 (79)
T ss_dssp EEEEEETTEEEEEEEETTEEEEEEEEGGGSCHHHHHHHHHHHHHC-
T ss_pred HHHHHhcceeEEEEcCCCcccCCccCcccChHHHHHHHHHHHHhhc
Confidence 5677899999866999884 55677888888888777664
No 15
>2g2d_A ATP:cobalamin adenosyltransferase; helix bundle, trimer, structural genomics, PSI, protein STRU initiative; 2.00A {Mycobacterium tuberculosis}
Probab=30.56 E-value=78 Score=26.23 Aligned_cols=51 Identities=20% Similarity=0.247 Sum_probs=36.2
Q ss_pred CCCHHHHHhHHHHHHHHhccCceeeeeeccccCCCCCCCCccH-HHHHHHHHHHHh
Q psy15661 68 DISGTEAIELNNWLDFYRTNYVYEGHLIGRFFNTNGSPTRHWH-EFQLKLKEAEAD 122 (217)
Q Consensus 68 ~Ls~~e~~~L~~W~~fy~~kY~~VG~Li~~~yd~~G~pt~~~~-~~~~~~~~~~~~ 122 (217)
.++++++..|+.|.+.|.+++|.....|- +.|.|..... -......+|++.
T Consensus 91 ~i~~~~v~~LE~~id~~~~~l~pl~~FIL----PGG~~~aA~LH~aRtv~RRAER~ 142 (193)
T 2g2d_A 91 RIAQSYIDRLEGWCDAYNAGLPALKSFVL----PGGSPLSALLHVARTVVRRAERS 142 (193)
T ss_dssp CCCHHHHHHHHHHHHHHHTTCCCCSSCEE----SCSSHHHHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHhhCCCCCceee----CCCCHHHHHHHHHHHHHHHHHHH
Confidence 58899999999999999999987765553 6676666554 344444444443
No 16
>1wy1_A Hypothetical protein PH0671; structural genomics, riken structural genomics/proteomics in RSGI, transferase; 1.80A {Pyrococcus horikoshii}
Probab=27.87 E-value=65 Score=26.23 Aligned_cols=50 Identities=16% Similarity=0.062 Sum_probs=34.6
Q ss_pred CCCHHHHHhHHHHHHHHhccCceeeeeeccccCCCCCCCCccH-HHHHHHHHHHHh
Q psy15661 68 DISGTEAIELNNWLDFYRTNYVYEGHLIGRFFNTNGSPTRHWH-EFQLKLKEAEAD 122 (217)
Q Consensus 68 ~Ls~~e~~~L~~W~~fy~~kY~~VG~Li~~~yd~~G~pt~~~~-~~~~~~~~~~~~ 122 (217)
.++++++..|+.|.+.|..++| ... |.=+.|.|..... -.+....+|++.
T Consensus 78 ~i~~~~v~~LE~~id~~~~~lp-l~~----FILPgg~~~aA~Lh~aRtv~RRAER~ 128 (172)
T 1wy1_A 78 GISEERIKWLEGLISRYEEMVN-LKS----FVLPGGTLESAKLDVCRTIARRAERK 128 (172)
T ss_dssp CCCHHHHHHHHHHHHHHHTTCS-CCS----SCCSCSSHHHHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHhhhCC-CcC----eEECCCCHHHHHHHHHHHHHHHHHHH
Confidence 5789999999999999999999 543 3336777666553 344444444443
No 17
>2ah6_A BH1595, unknown conserved protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; 1.60A {Bacillus halodurans}
Probab=27.82 E-value=65 Score=27.14 Aligned_cols=51 Identities=16% Similarity=-0.007 Sum_probs=36.2
Q ss_pred CCCHHHHHhHHHHHHHHhccCceeeeeeccccCCCCCCCCccH-HHHHHHHHHHHh
Q psy15661 68 DISGTEAIELNNWLDFYRTNYVYEGHLIGRFFNTNGSPTRHWH-EFQLKLKEAEAD 122 (217)
Q Consensus 68 ~Ls~~e~~~L~~W~~fy~~kY~~VG~Li~~~yd~~G~pt~~~~-~~~~~~~~~~~~ 122 (217)
.++++++..|+.|.+.|..++|.....|- +.|.|..... -.+....+|++.
T Consensus 97 ~i~~~~v~~LE~~Id~~~~~l~pl~~FIL----PGG~~~aA~LHvaRTv~RRAER~ 148 (208)
T 2ah6_A 97 KAKQEIVDFLEQRIDAYIKEAPELERFIL----PGGSEAAASLHVCRTIARRAERY 148 (208)
T ss_dssp SCCHHHHHHHHHHHHHHHHHSCCCCSCEE----SCSSHHHHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHhhCCCCcceee----CCCCHHHHHHHHHHHHHHHHHHH
Confidence 58899999999999999999987765553 6676666554 334444444443
No 18
>1wvt_A Hypothetical protein ST2180; structural genomics, unknown function; 2.30A {Sulfolobus tokodaii}
Probab=27.72 E-value=67 Score=26.19 Aligned_cols=51 Identities=10% Similarity=0.109 Sum_probs=35.8
Q ss_pred CCCHHHHHhHHHHHHHHhccCceeeeeeccccCCCCCCCCccH-HHHHHHHHHHHh
Q psy15661 68 DISGTEAIELNNWLDFYRTNYVYEGHLIGRFFNTNGSPTRHWH-EFQLKLKEAEAD 122 (217)
Q Consensus 68 ~Ls~~e~~~L~~W~~fy~~kY~~VG~Li~~~yd~~G~pt~~~~-~~~~~~~~~~~~ 122 (217)
.++++++..|+.|.+.|.+++|.....|- +.|.|..... -.+....+|++.
T Consensus 74 ~i~~~~v~~LE~~id~~~~~l~pl~~FIL----Pgg~~~aA~Lh~aRtv~RRAER~ 125 (172)
T 1wvt_A 74 NFSDEKVKGIEELITNYSKELEPLRNFVL----PGGHIASSFLHLARAVCRRAERS 125 (172)
T ss_dssp CCCTHHHHHHHHHHHHHHTTSCCCCSCEE----SCSSHHHHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHhhCCCCcceee----CCCCHHHHHHHHHHHHHHHHHHH
Confidence 57889999999999999999987765553 6676665553 444444444443
No 19
>3tr4_A Inorganic pyrophosphatase; central intermediary metabolism, hydrolase; HET: MSE; 2.00A {Coxiella burnetii} SCOP: b.40.5.0
Probab=25.93 E-value=86 Score=25.80 Aligned_cols=31 Identities=13% Similarity=0.281 Sum_probs=24.0
Q ss_pred CCCCCCCHHHHHhHHHHHHHHhc----cCceeeee
Q psy15661 64 EDIDDISGTEAIELNNWLDFYRT----NYVYEGHL 94 (217)
Q Consensus 64 ~d~~~Ls~~e~~~L~~W~~fy~~----kY~~VG~L 94 (217)
.|+++|.+..++.|.+|.+.|+. |...++-.
T Consensus 123 ~di~dl~~~~l~~i~~fF~~YK~le~gK~v~~~g~ 157 (178)
T 3tr4_A 123 QSLKDISSLLLDAISHFFERYKDLEPNKWAKVKGW 157 (178)
T ss_dssp CSGGGSCHHHHHHHHHHHHHTTTTSTTCCEEEEEE
T ss_pred CchhhCCHHHHHHHHHHHHHHcCcCCCceeEeccC
Confidence 57889999999999999999984 44444433
No 20
>1rty_A YVQK protein; all alpha-helical trimeric protein, structural genomics, PSI, protein structure initiative; 2.40A {Bacillus subtilis} SCOP: a.25.2.2
Probab=25.73 E-value=77 Score=26.28 Aligned_cols=51 Identities=16% Similarity=0.087 Sum_probs=36.1
Q ss_pred CCCHHHHHhHHHHHHHHhccCceeeeeeccccCCCCCCCCccH-HHHHHHHHHHHh
Q psy15661 68 DISGTEAIELNNWLDFYRTNYVYEGHLIGRFFNTNGSPTRHWH-EFQLKLKEAEAD 122 (217)
Q Consensus 68 ~Ls~~e~~~L~~W~~fy~~kY~~VG~Li~~~yd~~G~pt~~~~-~~~~~~~~~~~~ 122 (217)
.++++++..|+.|.+.|..++|.....|- +.|.|..... -.+....+|++.
T Consensus 84 ~i~~~~v~~LE~~Id~~~~~l~pl~~FIL----PGG~~~aA~LH~aRtv~RRAER~ 135 (193)
T 1rty_A 84 KLTEESVSFLETRIDAYTAEAPELKKFIL----PGGSKCASLLHIARTITRRAERR 135 (193)
T ss_dssp CCCHHHHHHHHHHHHHHHHHSCCCCSCBC----SCSSHHHHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHhhCCCCCceee----CCCCHHHHHHHHHHHHHHHHHHH
Confidence 57899999999999999999987765543 6777766554 334444444443
No 21
>3efb_A Probable SOR-operon regulator; alpha-beta-alpha sandwich, center for structural genomics of infectious diseases, csgid, transcription; HET: MSE; 2.00A {Shigella flexneri 2A} SCOP: c.124.1.8
Probab=25.00 E-value=37 Score=28.73 Aligned_cols=31 Identities=26% Similarity=0.494 Sum_probs=24.4
Q ss_pred CCHHHHHhHHHHHHHHhccCceeeeeeccccCCCCCCCC
Q psy15661 69 ISGTEAIELNNWLDFYRTNYVYEGHLIGRFFNTNGSPTR 107 (217)
Q Consensus 69 Ls~~e~~~L~~W~~fy~~kY~~VG~Li~~~yd~~G~pt~ 107 (217)
+++++++.| .+--.||-+-++|||.+|++..
T Consensus 178 ~s~~~~~~L--------~~~gaVGdi~~~ffd~~G~~v~ 208 (266)
T 3efb_A 178 YGGEESDDL--------NARQVAGDICSRFFDIHGAMVE 208 (266)
T ss_dssp SCHHHHHHH--------HHTTCCEEETTEEECTTSCBCC
T ss_pred CCHHHHHHH--------HHCCcEEEEecccccCCCCCCC
Confidence 566666666 3468999999999999999664
No 22
>3nze_A Putative transcriptional regulator, sugar-binding; structural genomics, PSI-2, protein structure initiative; 1.70A {Arthrobacter aurescens} SCOP: c.124.1.0
Probab=24.53 E-value=43 Score=28.42 Aligned_cols=33 Identities=18% Similarity=0.246 Sum_probs=26.1
Q ss_pred CCCCHHHHHhHHHHHHHHhccCceeeeeeccccCCCCCCCC
Q psy15661 67 DDISGTEAIELNNWLDFYRTNYVYEGHLIGRFFNTNGSPTR 107 (217)
Q Consensus 67 ~~Ls~~e~~~L~~W~~fy~~kY~~VG~Li~~~yd~~G~pt~ 107 (217)
.-|++++++.|. +--.||-+-++|||.+|++..
T Consensus 173 g~~s~~~~~~L~--------~~gaVGdi~~~ffd~~G~~v~ 205 (267)
T 3nze_A 173 GYLDEHDLTMLA--------ADDVVGDVATVFFRSDGSSDG 205 (267)
T ss_dssp SCCCHHHHHHHH--------HTTEEEEETTEEEETTSCCTT
T ss_pred CCCCHHHHHHHH--------HCCcEEEEecccccCCCCCCC
Confidence 346788877773 456999999999999999853
No 23
>1woz_A 177AA long conserved hypothetical protein (ST1454; structural genomics, unknown function; 1.94A {Sulfolobus tokodaii}
Probab=23.92 E-value=90 Score=25.49 Aligned_cols=51 Identities=14% Similarity=-0.020 Sum_probs=36.1
Q ss_pred CCCHHHHHhHHHHHHHHhccCceeeeeeccccCCCCCCCCccH-HHHHHHHHHHHh
Q psy15661 68 DISGTEAIELNNWLDFYRTNYVYEGHLIGRFFNTNGSPTRHWH-EFQLKLKEAEAD 122 (217)
Q Consensus 68 ~Ls~~e~~~L~~W~~fy~~kY~~VG~Li~~~yd~~G~pt~~~~-~~~~~~~~~~~~ 122 (217)
.++++++..|+.|.+.|.+++|.....|- +.|.|..... -.+....+|++.
T Consensus 76 ~i~~~~v~~LE~~id~~~~~l~~l~~FIL----PGg~~~aA~LH~aRtv~RRAER~ 127 (177)
T 1woz_A 76 KIDEKYVKWLEERTVEYRKESGPVKLFVI----PGGSEEASVLHVTRSVARRVERN 127 (177)
T ss_dssp CCCHHHHHHHHHHHHHHHHHHCCCEEEEE----SCSSHHHHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHhhCCCCCceec----CCCCHHHHHHHHHHHHHHHHHHH
Confidence 57899999999999999999987766554 6676666553 334444444443
No 24
>3ci3_A Cobalamin adenosyltransferase PDUO-like protein; adenosyltransferase variant, adenosylcobalamin binding, ATP binding; HET: 3PO 5AD B12; 1.11A {Lactobacillus reuteri} PDB: 3ci1_A* 3ci4_A* 2r6t_A* 2r6x_A* 3gah_A* 3gai_A* 3gaj_A*
Probab=23.07 E-value=80 Score=26.21 Aligned_cols=50 Identities=14% Similarity=0.001 Sum_probs=35.4
Q ss_pred CCCHHHHHhHHHHHHHHhccCceeeeeeccccCCCCCCCCccH-HHHHHHHHHHH
Q psy15661 68 DISGTEAIELNNWLDFYRTNYVYEGHLIGRFFNTNGSPTRHWH-EFQLKLKEAEA 121 (217)
Q Consensus 68 ~Ls~~e~~~L~~W~~fy~~kY~~VG~Li~~~yd~~G~pt~~~~-~~~~~~~~~~~ 121 (217)
.++++++..|+.|.+.|..++|.....|- +.|.|..... -......+|++
T Consensus 92 ~i~~~~v~~LE~~id~~~~~l~pl~~FIL----PGG~~~aA~LH~aRtv~RRAER 142 (194)
T 3ci3_A 92 FKQEQPTVWLEEKIDNYTQVVPAVKKFIL----PGGTQLASALHVARTITRRAER 142 (194)
T ss_dssp CCCHHHHHHHHHHHHHHHHHSCCCSSCBC----SCSSHHHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHhhCCCCCceee----CCCCHHHHHHHHHHHHHHHHHH
Confidence 68899999999999999999987765543 6776666554 33444444443
No 25
>2nt8_A Cobalamin adenosyltransferase; ATP binding; HET: ATP; 1.68A {Lactobacillus reuteri}
Probab=22.52 E-value=81 Score=26.85 Aligned_cols=50 Identities=14% Similarity=0.017 Sum_probs=35.3
Q ss_pred CCCHHHHHhHHHHHHHHhccCceeeeeeccccCCCCCCCCccHH-HHHHHHHHHH
Q psy15661 68 DISGTEAIELNNWLDFYRTNYVYEGHLIGRFFNTNGSPTRHWHE-FQLKLKEAEA 121 (217)
Q Consensus 68 ~Ls~~e~~~L~~W~~fy~~kY~~VG~Li~~~yd~~G~pt~~~~~-~~~~~~~~~~ 121 (217)
.++++++..|+.|.+.|.+++|.....|- +.|.|...... .+....+|++
T Consensus 121 ~i~~~~v~~LE~~Id~~~~~lppl~~FIL----PGGs~~aA~LHvaRTv~RRAER 171 (223)
T 2nt8_A 121 FKQEQPTVWLEEKIDNYTQVVPAVKKFIL----PGGTQLASALHVARTITRRAER 171 (223)
T ss_dssp CCCHHHHHHHHHHHHHHHHHSCCCSSCEE----SCSSHHHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHhhCCCCCceEe----CCCCHHHHHHHHHHHHHHHHHH
Confidence 57899999999999999999987765553 66766665543 3444444443
No 26
>1nog_A Conserved hypothetical protein TA0546; structural genomics, PSI, protein structure initiative, MIDW center for structural genomics; 1.55A {Thermoplasma acidophilum} SCOP: a.25.2.2
Probab=21.89 E-value=73 Score=26.08 Aligned_cols=51 Identities=8% Similarity=-0.076 Sum_probs=35.5
Q ss_pred CCCHHHHHhHHHHHHHHhccCceeeeeeccccCCCCCCCCccH-HHHHHHHHHHHh
Q psy15661 68 DISGTEAIELNNWLDFYRTNYVYEGHLIGRFFNTNGSPTRHWH-EFQLKLKEAEAD 122 (217)
Q Consensus 68 ~Ls~~e~~~L~~W~~fy~~kY~~VG~Li~~~yd~~G~pt~~~~-~~~~~~~~~~~~ 122 (217)
.++++++..|+.|.+.|.+++|.....|- +.|.|..... -.+....+|++.
T Consensus 77 ~i~~~~v~~LE~~id~~~~~l~~l~~FIL----PGg~~~aA~LH~aRtv~RRAER~ 128 (177)
T 1nog_A 77 TVTREMIDYLEARVKEMKAEIGKIELFVV----PGGSVESASLHMARAVSRRLERR 128 (177)
T ss_dssp CCCHHHHHHHHHHHHHHHHHHCCCCSCBC----SCSSHHHHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHhhCCCCCceee----CCCCHHHHHHHHHHHHHHHHHHH
Confidence 57899999999999999998877665443 6776666554 334444444443
No 27
>1z8u_A Alpha-hemoglobin stabilizing protein; alpha haemoglobin, AHSP, oxidation, interaction, electron transport; HET: HEM; 2.40A {Homo sapiens} SCOP: a.7.11.1 PDB: 1y01_A* 1w0b_A 3ovu_A* 1w09_A 1w0a_A 3ia3_A* 1xzy_A
Probab=20.43 E-value=49 Score=25.11 Aligned_cols=20 Identities=25% Similarity=0.880 Sum_probs=15.4
Q ss_pred CCHHHHHh-HHHHHHHHhccC
Q psy15661 69 ISGTEAIE-LNNWLDFYRTNY 88 (217)
Q Consensus 69 Ls~~e~~~-L~~W~~fy~~kY 88 (217)
++++.|.+ +++|++||-.-|
T Consensus 32 i~ee~MvtvV~DWvnfYinyy 52 (102)
T 1z8u_A 32 VSEEDMVTVVEDWMNFYINYY 52 (102)
T ss_dssp CCHHHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHHH
Confidence 67777765 489999998644
Done!