RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy15661
(217 letters)
>1j03_A Putative steroid binding protein; alpha and beta, structural
genomics, riken structural genomics/proteomics
initiative, RSGI; NMR {Arabidopsis thaliana} SCOP:
d.120.1.2 PDB: 1t0g_A
Length = 102
Score = 88.1 bits (218), Expect = 6e-23
Identities = 29/97 (29%), Positives = 53/97 (54%), Gaps = 3/97 (3%)
Query: 2 FSKEEIAKYVTEDK---LYLVILGHVFDVTKGKNYYKKGETYHCFVGRDGTRAFVSGNFT 58
F+ E++++Y D+ +Y+ I G VFDVT GK++Y G Y F G+D +RA +
Sbjct: 5 FTAEQLSQYNGTDESKPIYVAIKGRVFDVTTGKSFYGSGGDYSMFAGKDASRALGKMSKN 64
Query: 59 DEGLTEDIDDISGTEAIELNNWLDFYRTNYVYEGHLI 95
+E ++ ++ ++ E LN+W + Y G ++
Sbjct: 65 EEDVSPSLEGLTEKEINTLNDWETKFEAKYPVVGRVV 101
>1x3x_A Cytochrome B5; hemoprotein, porcine parasitic namatode, electron
transport; HET: HEM; 1.80A {Ascaris suum}
Length = 82
Score = 39.5 bits (93), Expect = 5e-05
Identities = 15/51 (29%), Positives = 28/51 (54%)
Query: 2 FSKEEIAKYVTEDKLYLVILGHVFDVTKGKNYYKKGETYHCFVGRDGTRAF 52
++KEE+AK+ T++ L+++ G V D+T + G+ G+D T
Sbjct: 6 YTKEEVAKHNTQNDLWIIYDGEVHDMTSFYKEHPGGKVILNKAGQDATSVL 56
>2ibj_A Cytochrome B5, CYTB5; FLY cytochrome B5, X-RAY diffraction, heme,
electron transport; HET: HEM; 1.55A {Musca domestica}
Length = 88
Score = 38.0 bits (89), Expect = 2e-04
Identities = 17/55 (30%), Positives = 28/55 (50%), Gaps = 7/55 (12%)
Query: 2 FSKEEIAKYVTEDKLYLVILGHVFDVTKGKNYYKK----GETYHCFVGRDGTRAF 52
F++ E+AK T+DK + +I +V+DVT + + E G+D T F
Sbjct: 9 FTRAEVAKNNTKDKNWFIIHNNVYDVTA---FLNEHPGGEEVLIEQAGKDATEHF 60
>2keo_A Probable E3 ubiquitin-protein ligase HERC2; protein of unknown
function, HERC2 cytochrome domain, ligase binding,
phosphoprotein; NMR {Homo sapiens}
Length = 112
Score = 38.2 bits (89), Expect = 3e-04
Identities = 9/55 (16%), Positives = 20/55 (36%), Gaps = 1/55 (1%)
Query: 1 MFSKEEIAKYVTEDKLYLVILGHVFDVTKGKNYYKKGETY-HCFVGRDGTRAFVS 54
+ ++ + + + VI G V+D+ + + F G D A +
Sbjct: 25 LVRIADLENHNNDGGFWTVIDGKVYDIKDFQTQSLTENSILAQFAGEDPVVALEA 79
>1cyo_A Cytochrome B5; electron transport; HET: HEM; 1.50A {Bos taurus}
SCOP: d.120.1.1 PDB: 1bfx_A* 1i87_A 1i8c_A 1iet_A
1ieu_A 1do9_A* 1aqa_A* 1aw3_A* 1axx_A* 1b5a_A* 1b5b_A*
1blv_A* 1mny_A* 2axx_A* 1ib7_A* 1jex_A* 1ehb_A* 1nx7_A*
1u9u_A* 1m20_A* ...
Length = 93
Score = 36.9 bits (86), Expect = 6e-04
Identities = 14/56 (25%), Positives = 25/56 (44%), Gaps = 7/56 (12%)
Query: 1 MFSKEEIAKYVTEDKLYLVILGHVFDVTKGKNYYKK----GETYHCFVGRDGTRAF 52
++ EEI K+ +L++ V+D+TK + ++ E G D T F
Sbjct: 6 YYTLEEIQKHNNSKSTWLILHYKVYDLTK---FLEEHPGGEEVLREQAGGDATENF 58
>3ner_A Cytochrome B5 type B; heme, electron transport; HET: HEM; 1.45A
{Homo sapiens} PDB: 1awp_A* 3mus_A* 1b5m_A* 1eue_A*
1icc_A* 1lj0_A* 2i89_A*
Length = 92
Score = 36.5 bits (85), Expect = 7e-04
Identities = 17/56 (30%), Positives = 28/56 (50%), Gaps = 7/56 (12%)
Query: 1 MFSKEEIAKYVTEDKLYLVILGHVFDVTKGKNYYKK----GETYHCFVGRDGTRAF 52
+ EE+AK + +L+LVI G V+DVT+ + + E G D + +F
Sbjct: 11 YYRLEEVAKRNSLKELWLVIHGRVYDVTR---FLNEHPGGEEVLLEQAGVDASESF 63
>3lf5_A Cytochrome B5 reductase 4; NCB5OR, electron transfer, redox,
heme, endoplasmic reticulu flavoprotein, iron,
metal-binding, NAD, oxidoreductase; HET: HEM; 1.25A
{Homo sapiens}
Length = 88
Score = 36.5 bits (85), Expect = 8e-04
Identities = 16/59 (27%), Positives = 27/59 (45%), Gaps = 15/59 (25%)
Query: 2 FSKEEIAKYVTEDKLYLVILGHVFDVTKGKNYYKKGETYH--------CFVGRDGTRAF 52
++EE+ K+ +D ++ I G V++V+ Y + YH G DGT F
Sbjct: 8 VTEEELKKHNKKDDCWICIRGFVYNVSP----YME---YHPGGEDELMRAAGSDGTELF 59
>1hko_A Cytochrome B5; electron transfer protein, heme, electron
transport; HET: HEM; NMR {Bos taurus} SCOP: d.120.1.1
PDB: 2i96_A*
Length = 104
Score = 36.6 bits (85), Expect = 0.001
Identities = 14/56 (25%), Positives = 25/56 (44%), Gaps = 7/56 (12%)
Query: 1 MFSKEEIAKYVTEDKLYLVILGHVFDVTKGKNYYKK----GETYHCFVGRDGTRAF 52
++ EEI K+ +L++ V+D+TK + ++ E G D T F
Sbjct: 10 YYTLEEIQKHNNSKSTWLILHYKVYDLTK---FLEEHPGGEEVLREQAGGDATENF 62
>1cxy_A Cytochrome B5; helix, beta-strand, electron transport; HET: HEM;
1.65A {Ectothiorhodospira shaposhnikovii} SCOP:
d.120.1.1
Length = 90
Score = 36.2 bits (84), Expect = 0.001
Identities = 13/56 (23%), Positives = 28/56 (50%), Gaps = 7/56 (12%)
Query: 1 MFSKEEIAKYVTEDKLYLVILGHVFDVTKGKNYYKK----GETYHCFVGRDGTRAF 52
+F+ E++A++ + D ++ I G V+D+T Y + G++ T A+
Sbjct: 9 VFTLEQVAEHHSPDDCWMAIHGKVYDLTP---YVPNHPGPAGMMLVWCGQESTEAW 61
>1mj4_A Sulfite oxidase; cytochrome B5, heme, oxidoreductase; HET: HEM;
1.20A {Homo sapiens} SCOP: d.120.1.1
Length = 82
Score = 33.0 bits (76), Expect = 0.011
Identities = 9/29 (31%), Positives = 20/29 (68%), Gaps = 1/29 (3%)
Query: 2 FSKEEIAKYVT-EDKLYLVILGHVFDVTK 29
++KEE++ + + E +++ + VFDVT+
Sbjct: 7 YTKEEVSSHTSPETGIWVTLGSEVFDVTE 35
>1kbi_A Cytochrome B2, L-LCR; flavocytochrome B2, electron transfer,
oxidoreductase; HET: HEM FMN; 2.30A {Saccharomyces
cerevisiae} SCOP: c.1.4.1 d.120.1.1 PDB: 1fcb_A*
1lco_A* 1ldc_A* 1sze_A* 2oz0_A* 1szf_A* 1szg_A* 1ltd_A*
1kbj_A* 1qcw_A* 3ks0_A*
Length = 511
Score = 33.1 bits (76), Expect = 0.056
Identities = 17/58 (29%), Positives = 28/58 (48%), Gaps = 13/58 (22%)
Query: 2 FSKEEIAKYVTEDKLYLVILGHVFDVTK-------GKNYYKKGETYHCFVGRDGTRAF 52
S E+AK+ D ++VI G+V+D+T+ G++ K G+D T F
Sbjct: 11 ISPAEVAKHNKPDDCWVVINGYVYDLTRFLPNHPGGQDVIKF------NAGKDVTAIF 62
>2pff_A Fatty acid synthase subunit alpha, 3-oxoacyl-[acyl-carrier-PR;
fatty acid synthase, acyl-carrier-protein, beta-ketoacyl
RED beta-ketoacyl synthase, dehydratase; 4.00A
{Saccharomyces cerevisiae}
Length = 1688
Score = 30.6 bits (69), Expect = 0.42
Identities = 27/164 (16%), Positives = 39/164 (23%), Gaps = 43/164 (26%)
Query: 45 GRDGTR--AFVSGNFTDEGLTE----------DIDDISGTEAIELNNWLDF--------- 83
G TR G F+ EG E ++ G W+D
Sbjct: 832 GSARTRWEMEAFGEFSLEGCVEMAWIMGFISYHNGNLKGRPYT---GWVDSKTKEPVDDK 888
Query: 84 -----YRTNYVYEGHLIGRFF--NTNGSPTRHWHEF------QLKLKEAEADSEEVLQEK 130
Y + E I R E + L+ EA E Q K
Sbjct: 889 DVKAKYE-TSILEHSGI-RLIEPELFNGYNPEKKEMIQEVIVEEDLEPFEASKETAEQFK 946
Query: 131 LKYPPCNVVWSQDEGTRVWCSTKSG--GIERDWTGVPRKLYQAG 172
++ ++ E G R + AG
Sbjct: 947 HQHGDKVDIFEIPETGEYSVKLLKGATLYIPKALRFDRLV--AG 988
>3hsi_A Phosphatidylserine synthase; CDP- diacylglycerol--serine
O-phosphatidyltransferase, structura genomics, PSI-2;
HET: MSE; 2.20A {Haemophilus influenzae}
Length = 458
Score = 28.8 bits (64), Expect = 1.3
Identities = 12/126 (9%), Positives = 32/126 (25%), Gaps = 9/126 (7%)
Query: 47 DGTRAFVSGNFTDEGLTEDIDDISGT-EAIELNNWLDFYRTNYVYEGHLIGRFFNTNGSP 105
D T + + + L + + I D + I + +
Sbjct: 149 DDTVLYSGASINNVYLHQFEKYRYDRYQKITHAELADSMV-------NFINDYLLDFSAV 201
Query: 106 TRHWHEFQLKLKEAEADSEEVLQEKLKYPPCNVVWSQDEGTRVWCSTKSGGIERDWTGVP 165
+ + KE + ++ L + S + V + G+ +
Sbjct: 202 YPLDVTNRPRTKEIRGNIRA-YRKDLAQNGEYSLKSAVKLPNVLSVSPLFGLGASGNELN 260
Query: 166 RKLYQA 171
+ +
Sbjct: 261 QVIEDL 266
>1sox_A Sulfite oxidase; oxidoreductase, sulfite oxidation; HET: MTE HEM
EPE; 1.90A {Gallus gallus} SCOP: b.1.18.6 d.120.1.1
d.176.1.1 PDB: 3hc2_A* 3hbq_A* 3hbg_A* 3hbp_A* 3r18_A*
3r19_A*
Length = 466
Score = 28.3 bits (63), Expect = 1.9
Identities = 8/30 (26%), Positives = 20/30 (66%), Gaps = 1/30 (3%)
Query: 1 MFSKEEIAKYVT-EDKLYLVILGHVFDVTK 29
+++EE+ ++ + E+++++ VFDVT
Sbjct: 6 EYTREEVGRHRSPEERVWVTHGTDVFDVTD 35
>2eo4_A 150AA long hypothetical histidine triad nucleotid protein; HIT
family, structural genomics, NPPSFA; 1.80A {Sulfolobus
tokodaii}
Length = 149
Score = 27.3 bits (61), Expect = 2.2
Identities = 5/40 (12%), Positives = 18/40 (45%)
Query: 93 HLIGRFFNTNGSPTRHWHEFQLKLKEAEADSEEVLQEKLK 132
H+I + + + + + KE +++++E ++
Sbjct: 98 HIIPTWEGDYPDIFKSFKPRKEQEKEYYELLQKIIRESIE 137
>3h7j_A Bacilysin biosynthesis protein BACB; YWFC, bacilysin synthesis,
anticapsin synthesis, BI-Cu double stranded beta helix,
antibiotic biosynthesis; HET: PPY; 1.87A {Bacillus
subtilis} PDB: 3h7y_A* 3h9a_A*
Length = 243
Score = 27.8 bits (61), Expect = 2.6
Identities = 7/49 (14%), Positives = 16/49 (32%), Gaps = 1/49 (2%)
Query: 5 EEIAKYVTEDKLYLVILGHVFDVTKGKNYYKKGETYHCFVGRDGTRAFV 53
E+I + + G ++ G Y+ + H + R +
Sbjct: 167 EQIG-ICIGGGYDMTVEGCTVEMKFGTAYFCEPREDHGAINRSEKESKS 214
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna;
HET: CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 27.2 bits (59), Expect = 3.3
Identities = 7/24 (29%), Positives = 9/24 (37%), Gaps = 7/24 (29%)
Query: 4 KEEIAKYVTEDKLY-------LVI 20
K+ + K KLY L I
Sbjct: 19 KQALKKLQASLKLYADDSAPALAI 42
>1wte_A ECOO109IR; restriction endonuclease, DNA complex, hydrolase/DNA
complex; 1.90A {Escherichia coli} SCOP: c.52.1.29 PDB:
1wtd_A
Length = 272
Score = 27.4 bits (60), Expect = 3.6
Identities = 17/72 (23%), Positives = 32/72 (44%)
Query: 61 GLTEDIDDISGTEAIELNNWLDFYRTNYVYEGHLIGRFFNTNGSPTRHWHEFQLKLKEAE 120
GLT+ + G +N +D +VY G + N + T+HW ++ E
Sbjct: 169 GLTDKYRILRGINTGANHNVIDIRDKVHVYAGKEFWSWLNNGEAETQHWVLEGIERAVKE 228
Query: 121 ADSEEVLQEKLK 132
AD +E ++ ++
Sbjct: 229 ADIKEKNKDLIE 240
>1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit;
oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus
denitrificans} SCOP: b.69.2.2 PDB: 1jju_B*
Length = 337
Score = 27.0 bits (59), Expect = 5.2
Identities = 9/39 (23%), Positives = 15/39 (38%), Gaps = 3/39 (7%)
Query: 24 VFDVTKGK--NYYKKGETYHCF-VGRDGTRAFVSGNFTD 59
FD+ K +Y+ V DG+ ++ G D
Sbjct: 264 SFDLEKNASIKRVPLPHSYYSVNVSTDGSTVWLGGALGD 302
>1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A
{Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B*
Length = 349
Score = 26.6 bits (58), Expect = 6.4
Identities = 9/40 (22%), Positives = 17/40 (42%), Gaps = 3/40 (7%)
Query: 23 HVFDVTKGK--NYYKKGETYHCF-VGRDGTRAFVSGNFTD 59
+D+ + K TY+C + G + ++ G F D
Sbjct: 278 AKYDLKQRKLIKAANLDHTYYCVAFDKKGDKLYLGGTFND 317
>3dh1_A TRNA-specific adenosine deaminase 2; zinc-binding protein, TRA tRNA
processing, hydrolase, structural genomics, structural
consortium, SGC; 2.80A {Homo sapiens}
Length = 189
Score = 26.0 bits (58), Expect = 8.1
Identities = 7/23 (30%), Positives = 11/23 (47%), Gaps = 3/23 (13%)
Query: 89 VYEGHLIGRFFN---TNGSPTRH 108
VY ++G+ N + TRH
Sbjct: 53 VYNNEVVGKGRNEVNQTKNATRH 75
>2nwi_A Hypothetical protein; structural genomics, unknown function, PSI-2,
protein structure initiative; 2.20A {Archaeoglobus
fulgidus} SCOP: d.190.1.3
Length = 172
Score = 25.7 bits (56), Expect = 9.4
Identities = 9/46 (19%), Positives = 20/46 (43%), Gaps = 6/46 (13%)
Query: 101 TNGSPTRH-----WHEFQLK-LKEAEADSEEVLQEKLKYPPCNVVW 140
T+GS T + +++ L++ ++ L E L+ + V
Sbjct: 13 TDGSITAIIEAVTQKKVEVETLEQKIIRADRELAELLEIDEGDEVN 58
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.318 0.137 0.434
Gapped
Lambda K H
0.267 0.0415 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 3,565,064
Number of extensions: 209591
Number of successful extensions: 445
Number of sequences better than 10.0: 1
Number of HSP's gapped: 444
Number of HSP's successfully gapped: 28
Length of query: 217
Length of database: 6,701,793
Length adjustment: 90
Effective length of query: 127
Effective length of database: 4,188,903
Effective search space: 531990681
Effective search space used: 531990681
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 55 (25.8 bits)