RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy15661
(217 letters)
>d1t0ga_ d.120.1.2 (A:) Putative steroid binding protein AT2G24940
{Thale cress (Arabidopsis thaliana) [TaxId: 3702]}
Length = 109
Score = 94.5 bits (235), Expect = 7e-26
Identities = 29/97 (29%), Positives = 53/97 (54%), Gaps = 3/97 (3%)
Query: 2 FSKEEIAKYVTEDK---LYLVILGHVFDVTKGKNYYKKGETYHCFVGRDGTRAFVSGNFT 58
F+ E++++Y D+ +Y+ I G VFDVT GK++Y G Y F G+D +RA +
Sbjct: 12 FTAEQLSQYNGTDESKPIYVAIKGRVFDVTTGKSFYGSGGDYSMFAGKDASRALGKMSKN 71
Query: 59 DEGLTEDIDDISGTEAIELNNWLDFYRTNYVYEGHLI 95
+E ++ ++ ++ E LN+W + Y G ++
Sbjct: 72 EEDVSPSLEGLTEKEINTLNDWETKFEAKYPVVGRVV 108
>d1kbia2 d.120.1.1 (A:1-97) Flavocytochrome b2, N-terminal domain
{Baker's yeast (Saccharomyces cerevisiae) [TaxId:
4932]}
Length = 97
Score = 43.4 bits (102), Expect = 1e-06
Identities = 16/52 (30%), Positives = 27/52 (51%), Gaps = 1/52 (1%)
Query: 2 FSKEEIAKYVTEDKLYLVILGHVFDVTKGKNYYKKGETYHC-FVGRDGTRAF 52
S E+AK+ D ++VI G+V+D+T+ + G+ G+D T F
Sbjct: 11 ISPAEVAKHNKPDDCWVVINGYVYDLTRFLPNHPGGQDVIKFNAGKDVTAIF 62
>d1cyoa_ d.120.1.1 (A:) Cytochrome b5 {Cow (Bos taurus) [TaxId:
9913]}
Length = 88
Score = 42.2 bits (99), Expect = 2e-06
Identities = 15/53 (28%), Positives = 24/53 (45%), Gaps = 1/53 (1%)
Query: 1 MFSKEEIAKYVTEDKLYLVILGHVFDVTKGKNYYKKGETY-HCFVGRDGTRAF 52
++ EEI K+ +L++ V+D+TK + GE G D T F
Sbjct: 6 YYTLEEIQKHNNSKSTWLILHYKVYDLTKFLEEHPGGEEVLREQAGGDATENF 58
>d1cxya_ d.120.1.1 (A:) Cytochrome b558 {Ectothiorhodospira
vacuolata [TaxId: 1054]}
Length = 81
Score = 41.0 bits (96), Expect = 6e-06
Identities = 12/52 (23%), Positives = 27/52 (51%), Gaps = 1/52 (1%)
Query: 2 FSKEEIAKYVTEDKLYLVILGHVFDVTKGKNYYKKG-ETYHCFVGRDGTRAF 52
F+ E++A++ + D ++ I G V+D+T + + G++ T A+
Sbjct: 5 FTLEQVAEHHSPDDCWMAIHGKVYDLTPYVPNHPGPAGMMLVWCGQESTEAW 56
>d1mj4a_ d.120.1.1 (A:) Sulfite oxidase, N-terminal domain {Human
(Homo sapiens) [TaxId: 9606]}
Length = 80
Score = 37.6 bits (87), Expect = 9e-05
Identities = 10/71 (14%), Positives = 27/71 (38%), Gaps = 5/71 (7%)
Query: 1 MFSKEEIAKYVT-EDKLYLVILGHVFDVTK-GKNYYKKGETYHCFVGRDGTRAFVSGNFT 58
+++KEE++ + + E +++ + VFDVT+ + G +
Sbjct: 4 IYTKEEVSSHTSPETGIWVTLGSEVFDVTEFVDLHPGGPSKLMLAAGGPLEPFW---ALY 60
Query: 59 DEGLTEDIDDI 69
+ ++
Sbjct: 61 AVHNQSHVREL 71
>d1euea_ d.120.1.1 (A:) Cytochrome b5 {Rat (Rattus norvegicus)
[TaxId: 10116]}
Length = 86
Score = 37.6 bits (87), Expect = 1e-04
Identities = 17/52 (32%), Positives = 29/52 (55%), Gaps = 1/52 (1%)
Query: 2 FSKEEIAKYVTEDKLYLVILGHVFDVTKGKNYYKKG-ETYHCFVGRDGTRAF 52
+ EE+AK T ++ ++VI G V+D+T+ + + G E G D T +F
Sbjct: 7 YRLEEVAKRNTAEETWMVIHGRVYDITRFLSEHPGGEEILLEQAGADATESF 58
>d1soxa2 d.120.1.1 (A:3-93) Sulfite oxidase, N-terminal domain
{Chicken (Gallus gallus) [TaxId: 9031]}
Length = 91
Score = 36.4 bits (84), Expect = 3e-04
Identities = 10/70 (14%), Positives = 28/70 (40%), Gaps = 5/70 (7%)
Query: 2 FSKEEIAKYVT-EDKLYLVILGHVFDVTKGKNYYKKG-ETYHCFVGRDGTRAFVSGNFTD 59
+++EE+ ++ + E+++++ VFDVT + G + G +
Sbjct: 5 YTREEVGRHRSPEERVWVTHGTDVFDVTDFVELHPGGPDKILLAAGGALEPFW---ALYA 61
Query: 60 EGLTEDIDDI 69
+ ++
Sbjct: 62 VHGEPHVLEL 71
>d1j1na_ c.94.1.1 (A:) Alginate-binding periplasmic protein AlgQ2
{Sphingomonas sp. [TaxId: 28214]}
Length = 492
Score = 27.2 bits (59), Expect = 1.8
Identities = 7/60 (11%), Positives = 20/60 (33%), Gaps = 4/60 (6%)
Query: 55 GNFTDEGLTEDIDDISGTEAIELNNWLDFY----RTNYVYEGHLIGRFFNTNGSPTRHWH 110
+ EG ++ + A + + + R +G++ + +G R +
Sbjct: 81 IQYGQEGAFVPLNKLIDQYAPHIKAFFKSHPEVERAIKAPDGNIYFIPYVPDGVVARGYF 140
>d1ulya_ a.4.5.58 (A:) Hypothetical protein PH1932 {Pyrococcus
horikoshii [TaxId: 53953]}
Length = 190
Score = 25.0 bits (54), Expect = 6.8
Identities = 6/35 (17%), Positives = 13/35 (37%), Gaps = 5/35 (14%)
Query: 158 ERDWTGVPRKLYQAGAESFRCACVNLDLSVGSDVI 192
+ K Y A+ F ++L +G + +
Sbjct: 67 TEMKGNLVEKYYGRTADVFY-----INLYLGDEEL 96
>d1wtea_ c.52.1.29 (A:) Restriction endonuclease EcoO109IR
{Escherichia coli [TaxId: 562]}
Length = 272
Score = 25.0 bits (54), Expect = 8.5
Identities = 17/65 (26%), Positives = 28/65 (43%)
Query: 61 GLTEDIDDISGTEAIELNNWLDFYRTNYVYEGHLIGRFFNTNGSPTRHWHEFQLKLKEAE 120
GLT+ + G +N +D +VY G + N + T+HW ++ E
Sbjct: 169 GLTDKYRILRGINTGANHNVIDIRDKVHVYAGKEFWSWLNNGEAETQHWVLEGIERAVKE 228
Query: 121 ADSEE 125
AD +E
Sbjct: 229 ADIKE 233
>d3bnea1 a.119.1.1 (A:150-839) Lipoxigenase, C-terminal domain
{Soybean (Glycine max), isozyme L1 [TaxId: 3847]}
Length = 690
Score = 24.9 bits (54), Expect = 9.2
Identities = 10/45 (22%), Positives = 19/45 (42%)
Query: 81 LDFYRTNYVYEGHLIGRFFNTNGSPTRHWHEFQLKLKEAEADSEE 125
L + ++ VY G + ++ + + +F KLKE E
Sbjct: 605 LSTHASDEVYLGQRDNPHWTSDSKALQAFQKFGNKLKEIEEKLVR 649
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.318 0.137 0.434
Gapped
Lambda K H
0.267 0.0582 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 902,152
Number of extensions: 42369
Number of successful extensions: 131
Number of sequences better than 10.0: 1
Number of HSP's gapped: 129
Number of HSP's successfully gapped: 17
Length of query: 217
Length of database: 2,407,596
Length adjustment: 82
Effective length of query: 135
Effective length of database: 1,281,736
Effective search space: 173034360
Effective search space used: 173034360
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 51 (23.7 bits)