BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy15662
(256 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3LQ3|A Chain A, Crystal Structure Of Human Choline Kinase Beta In Complex
With Phosphorylated Hemicholinium-3 And Adenosine
Nucleotide
Length = 401
Score = 119 bits (298), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 60/137 (43%), Positives = 90/137 (65%), Gaps = 10/137 (7%)
Query: 75 IFTLLGGLTNMLYHVTLLQ--PIQSSEPSEVLLRIYGQTHGERALESIITDSVIFTLLSE 132
++ + GGL+N+L+ +L P EP EVLLR+YG + ++S++ +SV+F +L+E
Sbjct: 77 VYPVSGGLSNLLFRCSLPDHLPSVGEEPREVLLRLYGAIL--QGVDSLVLESVMFAILAE 134
Query: 133 RKLGPTLHGVFPGGRIEEYIPDKETRKARSLKYSELTDPAISRKIAEKMADIHLMQIPVV 192
R LGP L+GVFP GR+E+YIP +R LK EL +P +S IA KMA H M++P
Sbjct: 135 RSLGPQLYGVFPEGRLEQYIP------SRPLKTQELREPVLSAAIATKMAQFHGMEMPFT 188
Query: 193 KEPTWLWDTIQRWLNTL 209
KEP WL+ T++R+L +
Sbjct: 189 KEPHWLFGTMERYLKQI 205
>pdb|3FEG|A Chain A, Crystal Structure Of Human Choline Kinase Beta In Complex
With Phosphorylated Hemicholinium-3 And Adenosine
Nucleotide
Length = 379
Score = 119 bits (297), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 60/137 (43%), Positives = 90/137 (65%), Gaps = 10/137 (7%)
Query: 75 IFTLLGGLTNMLYHVTLLQ--PIQSSEPSEVLLRIYGQTHGERALESIITDSVIFTLLSE 132
++ + GGL+N+L+ +L P EP EVLLR+YG + ++S++ +SV+F +L+E
Sbjct: 55 VYPVSGGLSNLLFRCSLPDHLPSVGEEPREVLLRLYGAIL--QGVDSLVLESVMFAILAE 112
Query: 133 RKLGPTLHGVFPGGRIEEYIPDKETRKARSLKYSELTDPAISRKIAEKMADIHLMQIPVV 192
R LGP L+GVFP GR+E+YIP +R LK EL +P +S IA KMA H M++P
Sbjct: 113 RSLGPQLYGVFPEGRLEQYIP------SRPLKTQELREPVLSAAIATKMAQFHGMEMPFT 166
Query: 193 KEPTWLWDTIQRWLNTL 209
KEP WL+ T++R+L +
Sbjct: 167 KEPHWLFGTMERYLKQI 183
>pdb|1NW1|A Chain A, Crystal Structure Of Choline Kinase
pdb|1NW1|B Chain B, Crystal Structure Of Choline Kinase
Length = 429
Score = 113 bits (283), Expect = 9e-26, Method: Compositional matrix adjust.
Identities = 64/155 (41%), Positives = 94/155 (60%), Gaps = 18/155 (11%)
Query: 80 GGLTNMLYHVTL--LQPIQSSEPSEVLLRIYGQTHGERALESIITDSVIFTLLSERKLGP 137
GG++NML+ L + P +EP++VLLR+Y E L + +SVIFTLLSER LGP
Sbjct: 83 GGMSNMLFLCRLSEVYPPIRNEPNKVLLRVYFNPETESHL---VAESVIFTLLSERHLGP 139
Query: 138 TLHGVFPGGRIEEYIPDKETRKARSLKYSELTDPAISRKIAEKMADIHLMQIPVVKEPTW 197
L+G+F GGR+EEYIP +R L E++ +S KIA+++A +H +++P+ KEP +
Sbjct: 140 KLYGIFSGGRLEEYIP------SRPLSCHEISLAHMSTKIAKRVAKVHQLEVPIWKEPDY 193
Query: 198 LWDTIQRWLNTLYLKNTGGNGTAEWRNGETLATEC 232
L + +QRWL L GT + + L EC
Sbjct: 194 LCEALQRWLKQL-------TGTVDAEHRFDLPEEC 221
>pdb|3F2R|A Chain A, Crystal Structure Of Human Choline Kinase Alpha In Complex
With Hemicholinium-3
pdb|3F2R|B Chain B, Crystal Structure Of Human Choline Kinase Alpha In Complex
With Hemicholinium-3
pdb|3G15|A Chain A, Crystal Structure Of Human Choline Kinase Alpha In Complex
With Hemicholinium-3 And Adp
pdb|3G15|B Chain B, Crystal Structure Of Human Choline Kinase Alpha In Complex
With Hemicholinium-3 And Adp
Length = 401
Score = 113 bits (282), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 66/206 (32%), Positives = 108/206 (52%), Gaps = 42/206 (20%)
Query: 6 CKGYLHGAWKRITAKDICVKRMSGGLTNMLYHVTLLQPIQS--SEPSEVLLRIYGQTHGE 63
CK +L GAW+ + + + + GGL+NML+ +L + EP +VLLR+YG
Sbjct: 39 CKEFLPGAWRGLREDEFHISVIRGGLSNMLFQCSLPDTTATLGDEPRKVLLRLYGAILQM 98
Query: 64 RALESIITDSVIFTLLGGLTNMLYHVTLLQPIQSSEPSEVLLRIYGQTHGERALESIITD 123
R+ ++ Q+ + +E + E+++ +
Sbjct: 99 RSCNKEGSE-----------------------QAQKENEF-----------QGAEAMVLE 124
Query: 124 SVIFTLLSERKLGPTLHGVFPGGRIEEYIPDKETRKARSLKYSELTDPAISRKIAEKMAD 183
SV+F +L+ER LGP L+G+FP GR+E++IP +R L EL+ P IS +IAEKMA
Sbjct: 125 SVMFAILAERSLGPKLYGIFPQGRLEQFIP------SRRLDTEELSLPDISAEIAEKMAT 178
Query: 184 IHLMQIPVVKEPTWLWDTIQRWLNTL 209
H M++P KEP WL+ T++++L +
Sbjct: 179 FHGMKMPFNKEPKWLFGTMEKYLKEV 204
>pdb|2I7Q|A Chain A, Crystal Structure Of Human Choline Kinase A
Length = 402
Score = 113 bits (282), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 66/206 (32%), Positives = 108/206 (52%), Gaps = 42/206 (20%)
Query: 6 CKGYLHGAWKRITAKDICVKRMSGGLTNMLYHVTLLQPIQS--SEPSEVLLRIYGQTHGE 63
CK +L GAW+ + + + + GGL+NML+ +L + EP +VLLR+YG
Sbjct: 40 CKEFLPGAWRGLREDEFHISVIRGGLSNMLFQCSLPDTTATLGDEPRKVLLRLYGAILQM 99
Query: 64 RALESIITDSVIFTLLGGLTNMLYHVTLLQPIQSSEPSEVLLRIYGQTHGERALESIITD 123
R+ ++ Q+ + +E + E+++ +
Sbjct: 100 RSCNKEGSE-----------------------QAQKENEF-----------QGAEAMVLE 125
Query: 124 SVIFTLLSERKLGPTLHGVFPGGRIEEYIPDKETRKARSLKYSELTDPAISRKIAEKMAD 183
SV+F +L+ER LGP L+G+FP GR+E++IP +R L EL+ P IS +IAEKMA
Sbjct: 126 SVMFAILAERSLGPKLYGIFPQGRLEQFIP------SRRLDTEELSLPDISAEIAEKMAT 179
Query: 184 IHLMQIPVVKEPTWLWDTIQRWLNTL 209
H M++P KEP WL+ T++++L +
Sbjct: 180 FHGMKMPFNKEPKWLFGTMEKYLKEV 205
>pdb|3ZM9|A Chain A, The Mechanism Of Allosteric Coupling In Choline Kinase A1
Revealed By A Rationally Designed Inhibitor
pdb|3ZM9|B Chain B, The Mechanism Of Allosteric Coupling In Choline Kinase A1
Revealed By A Rationally Designed Inhibitor
Length = 383
Score = 113 bits (282), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 66/203 (32%), Positives = 107/203 (52%), Gaps = 42/203 (20%)
Query: 6 CKGYLHGAWKRITAKDICVKRMSGGLTNMLYHVTLLQPIQS--SEPSEVLLRIYGQTHGE 63
CK +L GAW+ + + + + GGL+NML+ +L + EP +VLLR+YG
Sbjct: 21 CKEFLPGAWRGLREDEFHISVIRGGLSNMLFQCSLPDTTATLGDEPRKVLLRLYGAILQM 80
Query: 64 RALESIITDSVIFTLLGGLTNMLYHVTLLQPIQSSEPSEVLLRIYGQTHGERALESIITD 123
R+ ++ Q+ + +E + E+++ +
Sbjct: 81 RSCNKEGSE-----------------------QAQKENEF-----------QGAEAMVLE 106
Query: 124 SVIFTLLSERKLGPTLHGVFPGGRIEEYIPDKETRKARSLKYSELTDPAISRKIAEKMAD 183
SV+F +L+ER LGP L+G+FP GR+E++IP +R L EL+ P IS +IAEKMA
Sbjct: 107 SVMFAILAERSLGPKLYGIFPQGRLEQFIP------SRRLDTEELSLPDISAEIAEKMAT 160
Query: 184 IHLMQIPVVKEPTWLWDTIQRWL 206
H M++P KEP WL+ T++++L
Sbjct: 161 FHGMKMPFNKEPKWLFGTMEKYL 183
>pdb|2IG7|A Chain A, Crystal Structure Of Human Choline Kinase B
pdb|2IG7|B Chain B, Crystal Structure Of Human Choline Kinase B
Length = 401
Score = 111 bits (278), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 58/137 (42%), Positives = 85/137 (62%), Gaps = 10/137 (7%)
Query: 75 IFTLLGGLTNMLYHVTLLQ--PIQSSEPSEVLLRIYGQTHGERALESIITDSVIFTLLSE 132
++ + GGL+N+L+ +L P EP EVLLR+YG + ++S++ +SV F +L+E
Sbjct: 77 VYPVSGGLSNLLFRCSLPDHLPSVGEEPREVLLRLYGAIL--QGVDSLVLESVXFAILAE 134
Query: 133 RKLGPTLHGVFPGGRIEEYIPDKETRKARSLKYSELTDPAISRKIAEKMADIHLMQIPVV 192
R LGP L+GVFP GR+E+YIP +R LK EL +P +S IA K A H + P
Sbjct: 135 RSLGPQLYGVFPEGRLEQYIP------SRPLKTQELREPVLSAAIATKXAQFHGXEXPFT 188
Query: 193 KEPTWLWDTIQRWLNTL 209
KEP WL+ T +R+L +
Sbjct: 189 KEPHWLFGTXERYLKQI 205
>pdb|2CKO|A Chain A, Crystal Structure Of Human Choline Kinase Alpha 2
pdb|2CKO|B Chain B, Crystal Structure Of Human Choline Kinase Alpha 2
pdb|2CKP|A Chain A, Crystal Structure Of Human Choline Kinase Alpha-2 In
Complex With Adp
pdb|2CKP|B Chain B, Crystal Structure Of Human Choline Kinase Alpha-2 In
Complex With Adp
pdb|2CKQ|A Chain A, Crystal Structure Of Human Choline Kinase Alpha 2 In
Complex With Phosphocholine
pdb|2CKQ|B Chain B, Crystal Structure Of Human Choline Kinase Alpha 2 In
Complex With Phosphocholine
Length = 390
Score = 111 bits (277), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 58/134 (43%), Positives = 88/134 (65%), Gaps = 9/134 (6%)
Query: 75 IFTLLGGLTNMLYHVTLLQPIQS--SEPSEVLLRIYGQTHGERALESIITDSVIFTLLSE 132
I + GGL+NML+ +L + EP +VLLR+YG + E+++ +SV+F +L+E
Sbjct: 64 ISVIRGGLSNMLFQCSLPDTTATLGDEPRKVLLRLYGAIL-QVGAEAMVLESVMFAILAE 122
Query: 133 RKLGPTLHGVFPGGRIEEYIPDKETRKARSLKYSELTDPAISRKIAEKMADIHLMQIPVV 192
R LGP L+G+FP GR+E++IP +R L EL+ P IS +IAEKMA H M++P
Sbjct: 123 RSLGPKLYGIFPQGRLEQFIP------SRRLDTEELSLPDISAEIAEKMATFHGMKMPFN 176
Query: 193 KEPTWLWDTIQRWL 206
KEP WL+ T++++L
Sbjct: 177 KEPKWLFGTMEKYL 190
>pdb|3C5I|A Chain A, Crystal Structure Of Plasmodium Knowlesi Choline Kinase,
Pkh_134520
pdb|3C5I|B Chain B, Crystal Structure Of Plasmodium Knowlesi Choline Kinase,
Pkh_134520
pdb|3C5I|C Chain C, Crystal Structure Of Plasmodium Knowlesi Choline Kinase,
Pkh_134520
pdb|3C5I|D Chain D, Crystal Structure Of Plasmodium Knowlesi Choline Kinase,
Pkh_134520
Length = 369
Score = 55.5 bits (132), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 50/185 (27%), Positives = 83/185 (44%), Gaps = 31/185 (16%)
Query: 78 LLGGLTNMLYHVTLLQPIQSSEPS---EVLLRIYGQTHGERALESIITDSVIFTLLSERK 134
+L GLTN L+ V L + ++ S VL RIYG+ E L + I++ ++ +S+ K
Sbjct: 41 ILSGLTNQLFEVGLKEETANNYNSIRTRVLFRIYGKHVDE--LYNTISEFEVYKTMSKYK 98
Query: 135 LGPTLHGVFPGGRIEEYIPDKETRKARSLKYSELTDPAISRKIAEKMADIHLMQIPVVKE 194
+ P L F GGRIEE++ L+ +L +P I IA + H +
Sbjct: 99 IAPQLLNTFNGGRIEEWL------YGDPLRIDDLKNPTILIGIANVLGKFHTLSRKRHLP 152
Query: 195 PTW-----LWDTIQRWLNTLYLKNTGGNGTAEWRNGETLATECHKKNK-----IQMKKIL 244
W ++ +++W N L+ +++N E + HK K I+ K+
Sbjct: 153 EHWDRTPCIFKMMEKWKNQLF----------KYKNIEKYNCDIHKYIKESDKFIKFMKVY 202
Query: 245 SKDLN 249
SK N
Sbjct: 203 SKSDN 207
>pdb|3MES|A Chain A, Crystal Structure Of Choline Kinase From Cryptosporidium
Parvum Iowa Ii, Cgd3_2030
pdb|3MES|B Chain B, Crystal Structure Of Choline Kinase From Cryptosporidium
Parvum Iowa Ii, Cgd3_2030
Length = 424
Score = 47.0 bits (110), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 47/181 (25%), Positives = 77/181 (42%), Gaps = 24/181 (13%)
Query: 78 LLGGLTNMLYHVTLLQPIQSS--EPSEVLLRIYGQTHGERALESIITDSVIFTLLSERKL 135
+ GLTN L+ V+++ S + +L RIYG+ G+ + D +F LS +
Sbjct: 78 IFSGLTNQLFVVSIVNESMSLSLKHPRILFRIYGKHVGKFYDSKVELD--VFRYLSNINI 135
Query: 136 GPTLHGVFPGGRIEEYIPDKETRKARSLKYSELTDPAISRKIAEKMADIHLMQIPVVKEP 195
P + FP GRIEE+I D E + L+ + I ++A+ M +H++ P
Sbjct: 136 APNIIADFPEGRIEEFI-DGEPLTTKQLQLTH-----ICVEVAKNMGSLHIINSKRADFP 189
Query: 196 TWLWDTIQRWLNTLYLKNTGGNGTAEWRNGETLATECHKKNKIQMKKILSKDLNTEADWL 255
+ +D +YL WR + KN Q+ K L + E D L
Sbjct: 190 S-RFDKEPILFKRIYL----------WREEAKIQV---SKNNFQIDKELYSKILEEIDQL 235
Query: 256 K 256
+
Sbjct: 236 E 236
>pdb|3FI8|A Chain A, Crystal Structure Of Choline Kinase From Plasmodium
Falciparum, Pf14_0020
Length = 362
Score = 43.9 bits (102), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 26/84 (30%), Positives = 45/84 (53%), Gaps = 5/84 (5%)
Query: 72 DSVIFTLLGGLTNMLYHVTLLQPIQSS---EPSEVLLRIYGQTHGERALESIITDSVIFT 128
D + +L GLTN L+ V++ + VL RIYG+ AL + +++ ++
Sbjct: 27 DVCVNQILSGLTNQLFEVSIKEDTAIEYRITRRHVLFRIYGK--DVDALYNPLSEFEVYK 84
Query: 129 LLSERKLGPTLHGVFPGGRIEEYI 152
+S+ ++ P L F GGRIEE++
Sbjct: 85 TMSKYRIAPLLLNTFDGGRIEEWL 108
>pdb|2QG7|A Chain A, Plasmodium Vivax Ethanolamine Kinase Pv091845
pdb|2QG7|B Chain B, Plasmodium Vivax Ethanolamine Kinase Pv091845
pdb|2QG7|D Chain D, Plasmodium Vivax Ethanolamine Kinase Pv091845
pdb|2QG7|E Chain E, Plasmodium Vivax Ethanolamine Kinase Pv091845
Length = 458
Score = 43.1 bits (100), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 38/156 (24%), Positives = 75/156 (48%), Gaps = 33/156 (21%)
Query: 71 TDSVIFTLL-GGLTNMLYHVTLLQPIQSSEPSEVLLRIYGQTHGE---RALESIITDSVI 126
DS+ F ++ GG+TN+L V + S+ ++ L+R+YG E R E I+
Sbjct: 108 VDSLEFQIINGGITNILIKVKDM-----SKQAKYLIRLYGPKTDEIINREREKKIS---- 158
Query: 127 FTLLSERKLGPTLHGVFPGGRIEEYIPDKETRKARSLKYSELTDPAISRKIAEKMADIHL 186
+L + + ++ F GRIEE++ +L ++ +P + IA+ + +H
Sbjct: 159 -CILYNKNIAKKIYVFFTNGRIEEFM------DGYALSREDIKNPKFQKLIAKNLKLLHD 211
Query: 187 MQI--PVVKE-----------PTWLWDTIQRWLNTL 209
+++ + KE P++LW+TI ++ + L
Sbjct: 212 IKLNENLYKELQVTQKVPGTRPSFLWNTIWKYFHLL 247
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.318 0.135 0.402
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,578,488
Number of Sequences: 62578
Number of extensions: 294561
Number of successful extensions: 799
Number of sequences better than 100.0: 13
Number of HSP's better than 100.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 749
Number of HSP's gapped (non-prelim): 24
length of query: 256
length of database: 14,973,337
effective HSP length: 97
effective length of query: 159
effective length of database: 8,903,271
effective search space: 1415620089
effective search space used: 1415620089
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 50 (23.9 bits)