BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy15662
(256 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9Y259|CHKB_HUMAN Choline/ethanolamine kinase OS=Homo sapiens GN=CHKB PE=1 SV=3
Length = 395
Score = 119 bits (299), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 60/137 (43%), Positives = 90/137 (65%), Gaps = 10/137 (7%)
Query: 75 IFTLLGGLTNMLYHVTLLQ--PIQSSEPSEVLLRIYGQTHGERALESIITDSVIFTLLSE 132
++ + GGL+N+L+ +L P EP EVLLR+YG + ++S++ +SV+F +L+E
Sbjct: 71 VYPVSGGLSNLLFRCSLPDHLPSVGEEPREVLLRLYGAIL--QGVDSLVLESVMFAILAE 128
Query: 133 RKLGPTLHGVFPGGRIEEYIPDKETRKARSLKYSELTDPAISRKIAEKMADIHLMQIPVV 192
R LGP L+GVFP GR+E+YIP +R LK EL +P +S IA KMA H M++P
Sbjct: 129 RSLGPQLYGVFPEGRLEQYIP------SRPLKTQELREPVLSAAIATKMAQFHGMEMPFT 182
Query: 193 KEPTWLWDTIQRWLNTL 209
KEP WL+ T++R+L +
Sbjct: 183 KEPHWLFGTMERYLKQI 199
>sp|Q01134|CHKA_RAT Choline kinase alpha OS=Rattus norvegicus GN=Chka PE=2 SV=2
Length = 453
Score = 119 bits (297), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 72/207 (34%), Positives = 107/207 (51%), Gaps = 44/207 (21%)
Query: 6 CKGYLHGAWKRITAKDICVKRMSGGLTNMLYHVTLLQPIQS--SEPSEVLLRIYGQTHGE 63
CK +L GAW+ + + + GGL+NML+ +L I S EP +VLLR+YG
Sbjct: 91 CKEFLPGAWRGLREDQFHISVIRGGLSNMLFQCSLPDSIASVGDEPRKVLLRLYGAILKM 150
Query: 64 RALESIITDSVIFTLLGGLTNMLYHVTLLQPIQSSEPSEVLLRIYGQTHGE-RALESIIT 122
R+ + E SE Q E + E+++
Sbjct: 151 RSC------------------------------NKEGSEQ-----AQNENEFQGAEAMVL 175
Query: 123 DSVIFTLLSERKLGPTLHGVFPGGRIEEYIPDKETRKARSLKYSELTDPAISRKIAEKMA 182
+SV+F +L+ER LGP L+G+FP GR+E++IP +R L EL P IS +IAEKMA
Sbjct: 176 ESVMFAILAERSLGPKLYGIFPQGRLEQFIP------SRRLDTEELCLPDISAEIAEKMA 229
Query: 183 DIHLMQIPVVKEPTWLWDTIQRWLNTL 209
H M++P KEP WL+ T++++LN +
Sbjct: 230 TFHGMKMPFNKEPKWLFGTMEKYLNQV 256
>sp|O54783|CHKB_RAT Choline/ethanolamine kinase OS=Rattus norvegicus GN=Chkb PE=1 SV=3
Length = 394
Score = 118 bits (296), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 60/132 (45%), Positives = 87/132 (65%), Gaps = 10/132 (7%)
Query: 80 GGLTNMLYHVTLLQ--PIQSSEPSEVLLRIYGQTHGERALESIITDSVIFTLLSERKLGP 137
GGL+N+L+ +L P EP EVLLR+YG + ++S++ +SV+F +L+ER LGP
Sbjct: 76 GGLSNLLFRCSLPNHVPSMGGEPREVLLRLYGAIL--QGVDSLVLESVMFAILAERSLGP 133
Query: 138 TLHGVFPGGRIEEYIPDKETRKARSLKYSELTDPAISRKIAEKMADIHLMQIPVVKEPTW 197
L+GVFP GR+E+Y+P +R LK EL DP +S IA KMA H M++P KEP W
Sbjct: 134 QLYGVFPEGRLEQYLP------SRPLKTQELRDPVLSGAIATKMARFHGMEMPFTKEPRW 187
Query: 198 LWDTIQRWLNTL 209
L+ T++R+L +
Sbjct: 188 LFGTMERYLKQI 199
>sp|O54804|CHKA_MOUSE Choline kinase alpha OS=Mus musculus GN=Chka PE=1 SV=3
Length = 453
Score = 117 bits (293), Expect = 8e-26, Method: Compositional matrix adjust.
Identities = 72/207 (34%), Positives = 106/207 (51%), Gaps = 44/207 (21%)
Query: 6 CKGYLHGAWKRITAKDICVKRMSGGLTNMLYHVTLLQPIQS--SEPSEVLLRIYGQTHGE 63
CK +L GAW+ + + + GGL+NML+ +L I S EP +VLLR+YG
Sbjct: 91 CKEFLPGAWRGLREDQFHISVIRGGLSNMLFQCSLPDSIASVGDEPRKVLLRLYGAILKM 150
Query: 64 RALESIITDSVIFTLLGGLTNMLYHVTLLQPIQSSEPSEVLLRIYGQTHGE-RALESIIT 122
R+ + E SE Q E + E+++
Sbjct: 151 RSC------------------------------NKEGSEQ-----AQNENEFQGAEAMVL 175
Query: 123 DSVIFTLLSERKLGPTLHGVFPGGRIEEYIPDKETRKARSLKYSELTDPAISRKIAEKMA 182
+SV+F +L+ER LGP L G+FP GR+E++IP +R L EL P IS +IAEKMA
Sbjct: 176 ESVMFAILAERSLGPKLFGIFPQGRLEQFIP------SRRLDTEELRLPDISAEIAEKMA 229
Query: 183 DIHLMQIPVVKEPTWLWDTIQRWLNTL 209
H M++P KEP WL+ T++++LN +
Sbjct: 230 TFHGMKMPFNKEPKWLFGTMEKYLNQV 256
>sp|O55229|CHKB_MOUSE Choline/ethanolamine kinase OS=Mus musculus GN=Chkb PE=1 SV=3
Length = 394
Score = 117 bits (292), Expect = 9e-26, Method: Compositional matrix adjust.
Identities = 59/132 (44%), Positives = 88/132 (66%), Gaps = 10/132 (7%)
Query: 80 GGLTNMLYHVTLLQPIQS--SEPSEVLLRIYGQTHGERALESIITDSVIFTLLSERKLGP 137
GGL+N+L+ +L + S EP EVLLR+YG + ++S++ +SV+F +L+ER LGP
Sbjct: 76 GGLSNLLFRCSLPNHVPSVGGEPREVLLRLYGAIL--QGVDSLVLESVMFAILAERSLGP 133
Query: 138 TLHGVFPGGRIEEYIPDKETRKARSLKYSELTDPAISRKIAEKMADIHLMQIPVVKEPTW 197
L+GVFP GR+E+Y+P +R LK EL DP +S IA +MA H M++P KEP W
Sbjct: 134 QLYGVFPEGRLEQYLP------SRPLKTQELRDPVLSGAIATRMARFHGMEMPFTKEPRW 187
Query: 198 LWDTIQRWLNTL 209
L+ T++R+L +
Sbjct: 188 LFGTMERYLKQI 199
>sp|P35790|CHKA_HUMAN Choline kinase alpha OS=Homo sapiens GN=CHKA PE=1 SV=3
Length = 457
Score = 113 bits (283), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 66/206 (32%), Positives = 108/206 (52%), Gaps = 42/206 (20%)
Query: 6 CKGYLHGAWKRITAKDICVKRMSGGLTNMLYHVTLLQPIQS--SEPSEVLLRIYGQTHGE 63
CK +L GAW+ + + + + GGL+NML+ +L + EP +VLLR+YG
Sbjct: 95 CKEFLPGAWRGLREDEFHISVIRGGLSNMLFQCSLPDTTATLGDEPRKVLLRLYGAILQM 154
Query: 64 RALESIITDSVIFTLLGGLTNMLYHVTLLQPIQSSEPSEVLLRIYGQTHGERALESIITD 123
R+ ++ Q+ + +E + E+++ +
Sbjct: 155 RSCNKEGSE-----------------------QAQKENEF-----------QGAEAMVLE 180
Query: 124 SVIFTLLSERKLGPTLHGVFPGGRIEEYIPDKETRKARSLKYSELTDPAISRKIAEKMAD 183
SV+F +L+ER LGP L+G+FP GR+E++IP +R L EL+ P IS +IAEKMA
Sbjct: 181 SVMFAILAERSLGPKLYGIFPQGRLEQFIP------SRRLDTEELSLPDISAEIAEKMAT 234
Query: 184 IHLMQIPVVKEPTWLWDTIQRWLNTL 209
H M++P KEP WL+ T++++L +
Sbjct: 235 FHGMKMPFNKEPKWLFGTMEKYLKEV 260
>sp|P46558|KICB1_CAEEL Choline kinase B1 OS=Caenorhabditis elegans GN=ckb-1 PE=2 SV=2
Length = 371
Score = 78.6 bits (192), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 43/118 (36%), Positives = 65/118 (55%), Gaps = 16/118 (13%)
Query: 77 TLLGGLTNMLYHVTLLQPIQSSEPSEVLLRIYGQTHGERALESIITDSVIFTLLSERKLG 136
T+LGG +N ++HVT S+ + LLRI+ Q + D+V F + SER LG
Sbjct: 46 TILGGQSNHMFHVT-----SSTSATPYLLRIHRQ-----GPSHVFMDTVNFAIFSERGLG 95
Query: 137 PTLHGVFPGGRIEEYIPDKETRKARSLKYSELTDPAISRKIAEKMADIHLMQIPVVKE 194
P L+G F GGR+EE++P +R+L + DP ISR++ H + +PV K+
Sbjct: 96 PKLYGFFDGGRMEEFLP------SRTLDSDCILDPEISRRVGAVYPKYHAIDVPVSKK 147
>sp|P46560|KICB3_CAEEL Putative choline kinase B3 OS=Caenorhabditis elegans GN=ckb-3 PE=2
SV=2
Length = 368
Score = 70.5 bits (171), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 42/118 (35%), Positives = 65/118 (55%), Gaps = 20/118 (16%)
Query: 78 LLGGLTNMLYHVTLLQPIQSSEPSEVLLRIY--GQTHGERALESIITDSVIFTLLSERKL 135
+LGG +N ++HVT S+ + +LRI+ GQ+ + TD V F + SER L
Sbjct: 47 ILGGQSNHMFHVT-----SSTSATSFVLRIHREGQSQFD-------TDIVNFAIFSERGL 94
Query: 136 GPTLHGVFPGGRIEEYIPDKETRKARSLKYSELTDPAISRKIAEKMADIHLMQIPVVK 193
GP L+G F GR+EE++P + +LK +++ + ISRKI H + +PV K
Sbjct: 95 GPKLYGFFEEGRMEEFLP------SVTLKLNDVLNTEISRKIGAAFPKYHAINVPVSK 146
>sp|P46559|KICB2_CAEEL Choline kinase B2 OS=Caenorhabditis elegans GN=ckb-2 PE=1 SV=2
Length = 369
Score = 70.1 bits (170), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 56/174 (32%), Positives = 83/174 (47%), Gaps = 27/174 (15%)
Query: 80 GGLTNMLYHVTLLQPIQSSEPSEVLLRIYGQTHGERALESIITDSVIFTLLSERKLGPTL 139
GG +N ++HVT S+ + LLRI+ Q + + TD+V + SER LGP L
Sbjct: 49 GGQSNHMFHVT-----SSTSATPYLLRIHRQPPSQ-----VFTDTVNLAIFSERGLGPKL 98
Query: 140 HGVFPGGRIEEYIPDKETRKARSLKYSELTDPAISRKIAEKMADIHLMQIPVVKEPTWLW 199
+G F GGR+EE++P K + +++ P SRKI H + +PV K +
Sbjct: 99 YGFFEGGRMEEFLPSK------TFDVNDVLVPENSRKIGAIFPLYHSINVPVSKSRRCV- 151
Query: 200 DTIQRWLNTLYLKNTGGNGTAEWRNGETLATECHKKNKIQMKKILSKDLNTEAD 253
++ WLN Y GG + E L T + + K + KDLN E D
Sbjct: 152 HLMREWLNG-YESLGGG-------DYEILPTTVNYSD--HPKSVSIKDLNHEID 195
>sp|Q869T9|EKIA_DICDI Probable ethanolamine kinase A OS=Dictyostelium discoideum GN=etnkA
PE=3 SV=1
Length = 349
Score = 57.4 bits (137), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 44/137 (32%), Positives = 66/137 (48%), Gaps = 15/137 (10%)
Query: 72 DSVIFTLLGGLTNMLYHVTLLQPIQSSEPSEVLLRIYGQTHGE---RALESIITDSVIFT 128
D I L GG+TN+LY V Q V++R+YG E R E II T
Sbjct: 43 DLTIQKLNGGITNVLYLVEDKNIEQKYRYLPVVIRLYGYKSEEIIDRKNELIIQ-----T 97
Query: 129 LLSERKLGPTLHGVFPGGRIEEYIPDKETRKARSLKYSELTDPAISRKIAEKMADIHLMQ 188
+ LG +G+F G I +I K L Y +++ P + IA+++A H ++
Sbjct: 98 EADQNGLGAKFYGLFDNGCIYGFI------KGEPLAYEDISKPTMQTCIAKEIAQWHSIE 151
Query: 189 IPVVKEPTWLWDTIQRW 205
+P K P+ LW TI++W
Sbjct: 152 MPTRKNPS-LWPTIKKW 167
>sp|P20485|KICH_YEAST Choline kinase OS=Saccharomyces cerevisiae (strain ATCC 204508 /
S288c) GN=CKI1 PE=1 SV=1
Length = 582
Score = 53.1 bits (126), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 39/156 (25%), Positives = 78/156 (50%), Gaps = 24/156 (15%)
Query: 61 HGERALESIITDSVIFTLLGGLTNMLYHVTLLQPIQSSEPSEVLLRIYGQTHGERALESI 120
+ + ++ + D + + G +TN ++ V PS +LLRIYG +++I
Sbjct: 136 YNNKKIQPVAQDMNLVKISGAMTNAIFKVEY-----PKLPS-LLLRIYGPN-----IDNI 184
Query: 121 ITDSV---IFTLLSERKLGPTLHGVFPGGRIEEYIPDKETRKARSLKYSELTDPAISRKI 177
I I LS + +GP+L+G F GR E+++ +++L ++ + S++I
Sbjct: 185 IDREYELQILARLSLKNIGPSLYGCFVNGRFEQFL-----ENSKTLTKDDIRNWKNSQRI 239
Query: 178 AEKMADIHLMQIPVV----KEPTWLWDTIQRWLNTL 209
A +M ++H+ +P++ K + W I +WL T+
Sbjct: 240 ARRMKELHV-GVPLLSSERKNGSACWQKINQWLRTI 274
>sp|Q03764|EKI1_YEAST Ethanolamine kinase OS=Saccharomyces cerevisiae (strain ATCC 204508
/ S288c) GN=EKI1 PE=1 SV=1
Length = 534
Score = 52.0 bits (123), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 40/136 (29%), Positives = 64/136 (47%), Gaps = 28/136 (20%)
Query: 80 GGLTNMLY--HVTLLQPIQSSEPSEVLLRIYGQTHGERALESIITDSV---IFTLLSERK 134
G LTN++Y H L P+ L+RI+G +++S+I + LS
Sbjct: 142 GALTNVIYKIHYPNLPPL--------LMRIFGD-----SIDSVIDREYELKVIARLSFYD 188
Query: 135 LGPTLHGVFPGGRIEEYIPDKETRKARSLKYSELTDPAISRKIAEKMADIH----LMQIP 190
LGP L G F GR E+YI +R+ ++ D S KIA+K+ ++H L
Sbjct: 189 LGPKLEGFFENGRFEKYI-----EGSRTSTQADFIDRDTSIKIAKKLKELHCTVPLTHKE 243
Query: 191 VVKEPTWLWDTIQRWL 206
+ +P+ W T +W+
Sbjct: 244 ITDQPS-CWTTFDQWI 258
>sp|Q10276|KICH_SCHPO Putative choline kinase OS=Schizosaccharomyces pombe (strain 972 /
ATCC 24843) GN=SPAC13G7.12c PE=3 SV=1
Length = 456
Score = 43.9 bits (102), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 36/130 (27%), Positives = 59/130 (45%), Gaps = 14/130 (10%)
Query: 80 GGLTNMLYHVTLLQPIQSSEPSEVLLRIYGQTHGERALESIITDSVIFTLLSERKLGPTL 139
G LTN +Y+V P + ++LLRIYG H E + + + L+ +GP L
Sbjct: 70 GALTNAVYYVA---PPEGYHAPKLLLRIYG-PHVELFINRQVELENL-KRLARHNIGPYL 124
Query: 140 HGVFPGGRIEEYIPDKETRKARSLKYSELTDPAISRKIAEKMADIH---LMQIPVVKEPT 196
G F GR E+Y+ ++ +L + DP +S + ++ ++H L+ V E
Sbjct: 125 IGEFSNGRFEQYM------ESTTLTCKTIRDPKLSIYVGRRLCELHNFILLHPHEVLEMP 178
Query: 197 WLWDTIQRWL 206
W WL
Sbjct: 179 AAWKNCLVWL 188
>sp|Q554D8|EKIB_DICDI Probable ethanolamine kinase B OS=Dictyostelium discoideum GN=etnkB
PE=3 SV=1
Length = 447
Score = 39.7 bits (91), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 31/114 (27%), Positives = 56/114 (49%), Gaps = 10/114 (8%)
Query: 78 LLGGLTNMLYHVTLLQPIQSSEPSEVLLRIYGQTHGERALESIITDSVIFTLLSERKLGP 137
++GG+TN L+ + + Q S S V++R+YG+ G T++ I LLS+ +GP
Sbjct: 56 MVGGVTNTLFKSSFITG-QGSNKS-VIIRLYGK--GSEQFIDRKTEANIQYLLSKNGVGP 111
Query: 138 TLHGVFPGGRIEEYIPDKETRKARSLKYSELTDPAISRKIAEKMADIHLMQIPV 191
+G F G I Y+ + L+ +L I IA++ H +++ +
Sbjct: 112 KFYGTFENGCIYGYV------EGDQLQLEDLYQNNILSLIAKETGRWHSLKLDI 159
>sp|P54352|EAS_DROME Ethanolamine kinase OS=Drosophila melanogaster GN=eas PE=1 SV=2
Length = 518
Score = 37.0 bits (84), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 28/92 (30%), Positives = 45/92 (48%), Gaps = 9/92 (9%)
Query: 94 PIQSSEPSEVLLRIYGQTHGERALESIITDSVIFTLLSERKLGPTLHGVFPGGRIEEYIP 153
P+Q S+ + VL+RIYG + L ++ F LL L P+L+ F G + EY+P
Sbjct: 219 PVQYSD-NVVLVRIYG--NKTDLLIDRKAETQNFLLLHTYGLAPSLYATFKNGLVYEYVP 275
Query: 154 DKETRKARSLKYSELTDPAISRKIAEKMADIH 185
+L + P I +A +MA++H
Sbjct: 276 ------GTTLNTDSVLCPEIWPLVARRMAEMH 301
>sp|A4IN50|MASZ_GEOTN Malate synthase G OS=Geobacillus thermodenitrificans (strain
NG80-2) GN=glcB PE=3 SV=1
Length = 727
Score = 34.3 bits (77), Expect = 0.98, Method: Compositional matrix adjust.
Identities = 17/60 (28%), Positives = 28/60 (46%), Gaps = 2/60 (3%)
Query: 151 YIPDKETRKARSLKYSELTDPAISRKIAEKMADIH--LMQIPVVKEPTWLWDTIQRWLNT 208
++P +L Y ++ A+ ++A D ++QIPVV P W D IQ L+
Sbjct: 538 WVPSPTAATLHALHYHQVNVAAVQNELANDRNDYRDDILQIPVVDNPQWTADEIQEELDN 597
>sp|A7MCT6|EKI2_MOUSE Ethanolamine kinase 2 OS=Mus musculus GN=Etnk2 PE=1 SV=1
Length = 385
Score = 33.9 bits (76), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 34/129 (26%), Positives = 58/129 (44%), Gaps = 18/129 (13%)
Query: 81 GLTNMLYHVTLLQPIQSSEPSEVLLRIYGQTHGERALESIITDSVI--FTLLSERKLGPT 138
G+TN L + + ++ VL+R+YG ER + ++ + F LL P
Sbjct: 90 GITNKLLACYVEEDMRDC----VLVRVYG----ERTELLVDRENEVRNFQLLRAHGCAPK 141
Query: 139 LHGVFPGGRIEEYIPDKETRKARSLKYSELTDPAISRKIAEKMADIHLMQIP-VVKEPTW 197
L+ F G EY+ + +L + +P + R IA +MA IH + + +PT
Sbjct: 142 LYCTFQNGLCYEYV------QGVALGPEHIREPQLFRLIALEMAKIHTIHANGSLPKPT- 194
Query: 198 LWDTIQRWL 206
LW + R+
Sbjct: 195 LWHKMHRYF 203
>sp|P35590|TIE1_HUMAN Tyrosine-protein kinase receptor Tie-1 OS=Homo sapiens GN=TIE1 PE=1
SV=1
Length = 1138
Score = 33.1 bits (74), Expect = 1.9, Method: Composition-based stats.
Identities = 27/82 (32%), Positives = 37/82 (45%), Gaps = 10/82 (12%)
Query: 53 LLRIYGQTHGERALESIITDSVIFTLLGGLTN--------MLYHVTLLQPIQSSEPSEVL 104
LLR++ T G+ E++ + LL GLT LYH TLL P +S P+ VL
Sbjct: 581 LLRLWDGTRGQERRENVSSPQARTALLTGLTPGTHYQLDVQLYHCTLLGP--ASPPAHVL 638
Query: 105 LRIYGQTHGERALESIITDSVI 126
L G ++DS I
Sbjct: 639 LPPSGPPAPRHLHAQALSDSEI 660
>sp|P30624|LCF1_YEAST Long-chain-fatty-acid--CoA ligase 1 OS=Saccharomyces cerevisiae
(strain ATCC 204508 / S288c) GN=FAA1 PE=1 SV=1
Length = 700
Score = 32.0 bits (71), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 18/66 (27%), Positives = 32/66 (48%), Gaps = 5/66 (7%)
Query: 190 PVVKEPTWLWDTIQRWLNTLYLKNTGGNGTAEWRNGETLATECHKKNKIQMKKILSKDLN 249
P+V+ P T+ ++ + KN N WR+ E H+++K MKK+ K+ +
Sbjct: 30 PLVRPPNTKCSTVYEFVLECFQKNKNSNAMG-WRD----VKEIHEESKSVMKKVDGKETS 84
Query: 250 TEADWL 255
E W+
Sbjct: 85 VEKKWM 90
>sp|Q5KZR8|MASZ_GEOKA Malate synthase G OS=Geobacillus kaustophilus (strain HTA426)
GN=glcB PE=3 SV=1
Length = 727
Score = 32.0 bits (71), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 16/60 (26%), Positives = 28/60 (46%), Gaps = 2/60 (3%)
Query: 151 YIPDKETRKARSLKYSELTDPAISRKIAEKMADIH--LMQIPVVKEPTWLWDTIQRWLNT 208
++P +L Y ++ A+ ++A D ++QIPVV P W + IQ L+
Sbjct: 538 WVPSPTAATLHALHYHQVNVSAVQSELANDRNDYRDDMLQIPVVDHPQWTAEEIQEELDN 597
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.318 0.135 0.402
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 94,633,856
Number of Sequences: 539616
Number of extensions: 3692024
Number of successful extensions: 8761
Number of sequences better than 100.0: 25
Number of HSP's better than 100.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 15
Number of HSP's that attempted gapping in prelim test: 8713
Number of HSP's gapped (non-prelim): 38
length of query: 256
length of database: 191,569,459
effective HSP length: 115
effective length of query: 141
effective length of database: 129,513,619
effective search space: 18261420279
effective search space used: 18261420279
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 60 (27.7 bits)