RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy15662
(256 letters)
>1nw1_A Choline kinase (49.2 KD); phospholipid synthesis, protein kinase
fold, transferase; 2.02A {Caenorhabditis elegans} SCOP:
d.144.1.8
Length = 429
Score = 118 bits (296), Expect = 4e-31
Identities = 65/208 (31%), Positives = 100/208 (48%), Gaps = 58/208 (27%)
Query: 2 ALGICKGYLHGAWKRITAKDICVKRMSGGLTNMLYHVTLLQPIQSSEPSEVLLRIYGQTH 61
A +C +L GAWK + + + + R+ GG++NML+ L +
Sbjct: 56 AHMLCARFLGGAWKTVPLEHLRISRIKGGMSNMLFLCRLSEVYPPIRN------------ 103
Query: 62 GERALESIITDSVIFTLLGGLTNMLYHVTLLQPIQSSEPSEVLLRIYGQTHGERALESII 121
EP++VLLR+Y E ++
Sbjct: 104 -------------------------------------EPNKVLLRVYFNPETE---SHLV 123
Query: 122 TDSVIFTLLSERKLGPTLHGVFPGGRIEEYIPDKETRKARSLKYSELTDPAISRKIAEKM 181
+SVIFTLLSER LGP L+G+F GGR+EEYIP +R L E++ +S KIA+++
Sbjct: 124 AESVIFTLLSERHLGPKLYGIFSGGRLEEYIP------SRPLSCHEISLAHMSTKIAKRV 177
Query: 182 ADIHLMQIPVVKEPTWLWDTIQRWLNTL 209
A +H +++P+ KEP +L + +QRWL L
Sbjct: 178 AKVHQLEVPIWKEPDYLCEALQRWLKQL 205
>3f2s_A CK, chetk-alpha, choline kinase alpha; non-protein kinase,
structural genomics consortium, SGC, hemicholinium-3,
alternative splicing, cytoplasm; HET: ADP HC6; 1.70A
{Homo sapiens} PDB: 3f2r_A* 3g15_A* 2i7q_A 2cko_A
2ckp_A* 2ckq_A*
Length = 401
Score = 113 bits (283), Expect = 2e-29
Identities = 75/257 (29%), Positives = 121/257 (47%), Gaps = 59/257 (22%)
Query: 2 ALGICKGYLHGAWKRITAKDICVKRMSGGLTNMLYHVTLLQ--PIQSSEPSEVLLRIYGQ 59
A CK +L GAW+ + + + + GGL+NML+ +L EP +VLLR+YG
Sbjct: 35 AYLWCKEFLPGAWRGLREDEFHISVIRGGLSNMLFQCSLPDTTATLGDEPRKVLLRLYGA 94
Query: 60 THGERALESIITDSVIFTLLGGLTNMLYHVTLLQPIQSSEPSEVLLRIYGQTHGERALES 119
R + E SE + + + E+
Sbjct: 95 ILQMR------------------------------SCNKEGSEQAQKE----NEFQGAEA 120
Query: 120 IITDSVIFTLLSERKLGPTLHGVFPGGRIEEYIPDKETRKARSLKYSELTDPAISRKIAE 179
++ +SV+F +L+ER LGP L+G+FP GR+E++IP +R L EL+ P IS +IAE
Sbjct: 121 MVLESVMFAILAERSLGPKLYGIFPQGRLEQFIP------SRRLDTEELSLPDISAEIAE 174
Query: 180 KMADIHLMQIPVVKEPTWLWDTIQRWLNTLYLKNTGGNGTAEWRNGETLATECHKKNKIQ 239
KMA H M++P KEP WL+ T++++L + + + K +
Sbjct: 175 KMATFHGMKMPFNKEPKWLFGTMEKYLKEV----------------LRIKFTEESRIK-K 217
Query: 240 MKKILSKDLNTEADWLK 256
+ K+LS +L E + L+
Sbjct: 218 LHKLLSYNLPLELENLR 234
>3feg_A Choline/ethanolamine kinase; non-protein kinase, choline kinase,
structural genomics CONS SGC, hemicholinium-3,
phosphorylation; HET: HC7 ADP AMP; 1.30A {Homo sapiens}
PDB: 3lq3_A* 2ig7_A*
Length = 379
Score = 109 bits (273), Expect = 4e-28
Identities = 76/246 (30%), Positives = 115/246 (46%), Gaps = 62/246 (25%)
Query: 2 ALGICKGYLHGAWKRITAKDICVKRMSGGLTNMLYHVTLLQPIQSSEPSEVLLRIYGQTH 61
A C+ YL GAW+R+ +++ V +SGGL+N+L+ +L + S
Sbjct: 33 AYQWCREYLGGAWRRVQPEELRVYPVSGGLSNLLFRCSLPDHLPS--------------- 77
Query: 62 GERALESIITDSVIFTLLGGLTNMLYHVTLLQPIQSSEPSEVLLRIYGQTHGERALESII 121
EP EVLLR+YG ++S++
Sbjct: 78 ----------------------------------VGEEPREVLLRLYGAILQG--VDSLV 101
Query: 122 TDSVIFTLLSERKLGPTLHGVFPGGRIEEYIPDKETRKARSLKYSELTDPAISRKIAEKM 181
+SV+F +L+ER LGP L+GVFP GR+E+YIP +R LK EL +P +S IA KM
Sbjct: 102 LESVMFAILAERSLGPQLYGVFPEGRLEQYIP------SRPLKTQELREPVLSAAIATKM 155
Query: 182 ADIHLMQIPVVKEPTWLWDTIQRWLNTLYLKNTGGNGTAEWRNGETLATECHKKNKIQMK 241
A H M++P KEP WL+ T++R+L +++ G E E K ++
Sbjct: 156 AQFHGMEMPFTKEPHWLFGTMERYLK--QIQDLPPTGLPEMNLLE---MYSLKDEMGNLR 210
Query: 242 KILSKD 247
K+L
Sbjct: 211 KLLEST 216
>3mes_A Choline kinase; malaria, structural genomics, structural genomics
consortium, SGC, transferase; HET: ADP DME PT3; 2.35A
{Cryptosporidium parvum}
Length = 424
Score = 94.0 bits (232), Expect = 2e-22
Identities = 37/165 (22%), Positives = 66/165 (40%), Gaps = 16/165 (9%)
Query: 75 IFTLLGGLTNMLYHVTLLQ--PIQSSEPSEVLLRIYGQTHGERALESIITDSVIFTLLSE 132
+ + GLTN L+ V+++ S + +L RIYG+ G+ + +F LS
Sbjct: 75 VKQIFSGLTNQLFVVSIVNESMSLSLKHPRILFRIYGKHVGK--FYDSKVELDVFRYLSN 132
Query: 133 RKLGPTLHGVFPGGRIEEYIPDKETRKARSLKYSELTDPAISRKIAEKMADIHLMQIPVV 192
+ P + FP GRIEE+I L +L I ++A+ M +H++
Sbjct: 133 INIAPNIIADFPEGRIEEFID------GEPLTTKQLQLTHICVEVAKNMGSLHIINSKRA 186
Query: 193 KEPT------WLWDTIQRWLNTLYLKNTGGNGTAEWRNGETLATE 231
P+ L+ I W ++ + N + + E
Sbjct: 187 DFPSRFDKEPILFKRIYLWREEAKIQVSKNNFQIDKELYSKILEE 231
>3c5i_A Choline kinase; choline, kinase, malaria, transferase, structural
genomics, structural genomics consortium; 2.20A
{Plasmodium knowlesi} PDB: 3fi8_A*
Length = 369
Score = 90.8 bits (224), Expect = 3e-21
Identities = 44/214 (20%), Positives = 76/214 (35%), Gaps = 62/214 (28%)
Query: 2 ALGICKGYLHGAWKRITAKDICVKRMSGGLTNMLYHVTLLQPIQSSEPSEVLLRIYGQTH 61
IC + W T ++ VK++ GLTN L+ V L + ++ S
Sbjct: 17 IKKICLEKVPE-WNHFTEDNLRVKQILSGLTNQLFEVGLKEETANNYNSI---------- 65
Query: 62 GERALESIITDSVIFTLLGGLTNMLYHVTLLQPIQSSEPSEVLLRIYGQTHGERALESII 121
+ VL RIYG+ L + I
Sbjct: 66 --------------------------------------RTRVLFRIYGK--HVDELYNTI 85
Query: 122 TDSVIFTLLSERKLGPTLHGVFPGGRIEEYIPDKETRKARSLKYSELTDPAISRKIAEKM 181
++ ++ +S+ K+ P L F GGRIEE++ L+ +L +P I IA +
Sbjct: 86 SEFEVYKTMSKYKIAPQLLNTFNGGRIEEWLY------GDPLRIDDLKNPTILIGIANVL 139
Query: 182 ADIHLMQIPVVKEPTW-----LWDTIQRWLNTLY 210
H + W ++ +++W N L+
Sbjct: 140 GKFHTLSRKRHLPEHWDRTPCIFKMMEKWKNQLF 173
>2qg7_A Ethanolamine kinase PV091845; malaria, SGC, structural genomics
consortium, transferase; 2.41A {Plasmodium vivax}
Length = 458
Score = 84.8 bits (208), Expect = 4e-19
Identities = 35/181 (19%), Positives = 80/181 (44%), Gaps = 27/181 (14%)
Query: 43 PIQSSEPSEVLLRIYGQTHGERALESIITDSVIFTLL-GGLTNMLYHVTLLQPIQSSEPS 101
++ + + + +G+ + DS+ F ++ GG+TN+L V S+ +
Sbjct: 80 VFENEKTLYIYCKYVMLHYGKDLVNPNEVDSLEFQIINGGITNILIKVKD-----MSKQA 134
Query: 102 EVLLRIYGQTHGERALESIITDSVIFTLLSERKLGPTLHGVFPGGRIEEYIPDKETRKAR 161
+ L+R+YG E + + + I +L + + ++ F GRIEE++
Sbjct: 135 KYLIRLYGPKTDE--IINREREKKISCILYNKNIAKKIYVFFTNGRIEEFMD------GY 186
Query: 162 SLKYSELTDPAISRKIAEKMADIHLMQIPVV-------------KEPTWLWDTIQRWLNT 208
+L ++ +P + IA+ + +H +++ P++LW+TI ++ +
Sbjct: 187 ALSREDIKNPKFQKLIAKNLKLLHDIKLNENLYKELQVTQKVPGTRPSFLWNTIWKYFHL 246
Query: 209 L 209
L
Sbjct: 247 L 247
>3dxq_A Choline/ethanolamine kinase family protein; NP_106042.1, STR
genomics, joint center for structural genomics, JCSG,
prote structure initiative; HET: MSE; 2.55A
{Mesorhizobium loti}
Length = 301
Score = 73.6 bits (180), Expect = 2e-15
Identities = 33/155 (21%), Positives = 54/155 (34%), Gaps = 26/155 (16%)
Query: 64 RALESIITDSVIFTLLGGLTNMLYHVTLLQPIQSSEPSEVLLRIYGQTHGE---RALESI 120
A+ + + LGGLTN+++ ++ LRI G+ E RA E++
Sbjct: 12 AAIPMLAGYTGPLERLGGLTNLVFRAG-----------DLCLRIPGKGTEEYINRANEAV 60
Query: 121 ITDSVIFTLLSERKLGPTLHGVFP--GGRIEEYIPDKETRKARSLKYSELTDPAISRKIA 178
++ + P + V P G + YI +T K T P +
Sbjct: 61 -----AAREAAKAGVSPEVLHVDPATGVMVTRYIAGAQTMSPEKFK----TRPGSPARAG 111
Query: 179 EKMADIHLMQIPVVKEPTWLWDTIQRWLNTLYLKN 213
E +H L+ I +L L KN
Sbjct: 112 EAFRKLHGSGAVFPFRF-ELFAMIDDYLKVLSTKN 145
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 43.9 bits (103), Expect = 3e-05
Identities = 47/281 (16%), Positives = 83/281 (29%), Gaps = 119/281 (42%)
Query: 52 VLLRIYGQTHGE-----RAL----ESIITDSVI--------FTLLGGLTNMLYHVTLL-- 92
V ++ G T GE + + ++T I F ++ +T+L
Sbjct: 251 VTAKLLGFTPGELRSYLKGATGHSQGLVTAVAIAETDSWESF-----FVSVRKAITVLFF 305
Query: 93 -----Q---PIQSSEPSEV-------------LLRIYGQTHGERALESII--------TD 123
P S PS + +L I T + ++ +
Sbjct: 306 IGVRCYEAYPNTSLPPSILEDSLENNEGVPSPMLSISNLTQEQ--VQDYVNKTNSHLPAG 363
Query: 124 SVIFTLL--SERKL---GP--TLHGV--------FPGGRIEEYIPDKETRKAR-SLKY-- 165
+ L + L GP +L+G+ P G + IP E RK + S ++
Sbjct: 364 KQVEISLVNGAKNLVVSGPPQSLYGLNLTLRKAKAPSGLDQSRIPFSE-RKLKFSNRFLP 422
Query: 166 ------SELTDPAISRKIAEKMADIHL------MQIPVVKEPTWLWDTIQRWLNTLYLKN 213
S L PA I + + ++ +QIPV +DT
Sbjct: 423 VASPFHSHLLVPASD-LINKDLVKNNVSFNAKDIQIPV-------YDT-----------F 463
Query: 214 TGGNGTAEWRNGETLATECHKKNKIQMKKILSKDLNTEADW 254
G + R +E + I+ + W
Sbjct: 464 DGSD----LRVLSGSISERI----VDC--IIRLPV----KW 490
>3l46_A Protein ECT2; alternative splicing, guanine-nucleotide releasing
factor, phosphoprotein, polymorphism, proto-oncogene,
structural genomics; 1.48A {Homo sapiens}
Length = 112
Score = 27.5 bits (61), Expect = 2.0
Identities = 8/33 (24%), Positives = 14/33 (42%), Gaps = 1/33 (3%)
Query: 173 ISRKIAEKMADIHLMQIPVVKEPTWLWDTIQRW 205
+ I + + ++ VVK W W +IQ
Sbjct: 64 VEENIVKDLPFEPSKKLYVVK-QEWFWGSIQMD 95
>3olc_X DNA topoisomerase 2-binding protein 1; BRCT domain, DNA repair,
RAD9, DNA binding protein; HET: DNA; 2.40A {Homo
sapiens} PDB: 2xnk_A* 2xnh_A*
Length = 298
Score = 27.8 bits (61), Expect = 4.0
Identities = 4/17 (23%), Positives = 9/17 (52%), Gaps = 1/17 (5%)
Query: 189 IPVVKEPTWLWDTIQRW 205
+ V W +D+I++
Sbjct: 259 VHCVT-TQWFFDSIEKG 274
>2pff_A Fatty acid synthase subunit alpha, 3-oxoacyl-[acyl-carrier-PR; fatty
acid synthase, acyl-carrier-protein, beta-ketoacyl RED
beta-ketoacyl synthase, dehydratase; 4.00A {Saccharomyces
cerevisiae}
Length = 1688
Score = 27.9 bits (62), Expect = 4.6
Identities = 16/89 (17%), Positives = 35/89 (39%), Gaps = 16/89 (17%)
Query: 85 MLYHVTLLQPIQSSEPSEVLLRIYGQTHGERALESIITDSVIFTLLSERKLGPTLHG--- 141
M+ V + + ++ E S+ + HG++ I ++ +++ + G TL+
Sbjct: 922 MIQEVIVEEDLEPFEASKETAEQFKHQHGDKVDIFEIPETGEYSV--KLLKGATLYIPKA 979
Query: 142 -VFP---GGRI------EEY-IPDKETRK 159
F G+I + Y I D +
Sbjct: 980 LRFDRLVAGQIPTGWNAKTYGISDDIISQ 1008
>2cou_A ECT2 protein; BRCT domain, RHO GTPase, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Mus musculus}
Length = 109
Score = 26.4 bits (58), Expect = 4.7
Identities = 7/17 (41%), Positives = 9/17 (52%), Gaps = 1/17 (5%)
Query: 189 IPVVKEPTWLWDTIQRW 205
+ VVK W W +IQ
Sbjct: 71 LFVVK-QEWFWGSIQMD 86
>2d8m_A DNA-repair protein XRCC1; parallel beta-sheet, DNA ligase III,
poly(ADP-ribose) polymerase-1, DNA polymerase beta,
structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 129
Score = 26.4 bits (58), Expect = 6.1
Identities = 4/27 (14%), Positives = 11/27 (40%), Gaps = 1/27 (3%)
Query: 179 EKMADIHLMQIPVVKEPTWLWDTIQRW 205
K + + + +V+ W+ D +
Sbjct: 71 PKYSQVLGLGGRIVR-KEWVLDCHRMR 96
>155c_A Cytochrome C550; electron transport; HET: HEM; 2.50A {Paracoccus
denitrificans} SCOP: a.3.1.1
Length = 135
Score = 26.2 bits (58), Expect = 7.7
Identities = 16/75 (21%), Positives = 22/75 (29%), Gaps = 30/75 (40%)
Query: 134 KLGPTLHGVF--PGGRIEEYIPDKETRKARSLKYSELTDPAISRKIAEKMADIHLMQIPV 191
K GP L+GV E + KY E AEK D+
Sbjct: 34 KTGPNLYGVVGRKIASEEGF------------KYGEGILEV-----AEKNPDL------- 69
Query: 192 VKEPTWLWDTIQRWL 206
TW + ++
Sbjct: 70 ----TWTEANLIEYV 80
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.318 0.135 0.402
Gapped
Lambda K H
0.267 0.0676 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 3,906,200
Number of extensions: 224087
Number of successful extensions: 430
Number of sequences better than 10.0: 1
Number of HSP's gapped: 413
Number of HSP's successfully gapped: 24
Length of query: 256
Length of database: 6,701,793
Length adjustment: 91
Effective length of query: 165
Effective length of database: 4,160,982
Effective search space: 686562030
Effective search space used: 686562030
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 56 (25.5 bits)