RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy15662
         (256 letters)



>d1nw1a_ d.144.1.8 (A:) Choline kinase {Caenorhabditis elegans
           [TaxId: 6239]}
          Length = 395

 Score =  107 bits (267), Expect = 1e-27
 Identities = 76/256 (29%), Positives = 115/256 (44%), Gaps = 71/256 (27%)

Query: 1   MALGICKGYLHGAWKRITAKDICVKRMSGGLTNMLYHVTLLQPIQSSEPSEVLLRIYGQT 60
            A  +C  +L GAWK +  + + + R+ GG++NML+   L      SE    +       
Sbjct: 24  RAHMLCARFLGGAWKTVPLEHLRISRIKGGMSNMLFLCRL------SEVYPPIRN----- 72

Query: 61  HGERALESIITDSVIFTLLGGLTNMLYHVTLLQPIQSSEPSEVLLRIYGQTHGERALESI 120
                                                 EP++VLLR+Y     E  L   
Sbjct: 73  --------------------------------------EPNKVLLRVYFNPETESHLV-- 92

Query: 121 ITDSVIFTLLSERKLGPTLHGVFPGGRIEEYIPDKETRKARSLKYSELTDPAISRKIAEK 180
             +SVIFTLLSER LGP L+G+F GGR+EEYIP      +R L   E++   +S KIA++
Sbjct: 93  -AESVIFTLLSERHLGPKLYGIFSGGRLEEYIP------SRPLSCHEISLAHMSTKIAKR 145

Query: 181 MADIHLMQIPVVKEPTWLWDTIQRWLNTLYLKNTGGNGTAEWRNGETLATECHKKNKIQM 240
           +A +H +++P+ KEP +L + +QRWL  L      G   AE R             +  +
Sbjct: 146 VAKVHQLEVPIWKEPDYLCEALQRWLKQL-----TGTVDAEHRF--------DLPEECGV 192

Query: 241 KKILSKDLNTEADWLK 256
             +   DL  E ++L+
Sbjct: 193 SSVNCLDLARELEFLR 208


>d1t15a2 c.15.1.3 (A:1758-1859) Breast cancer associated protein,
           BRCA1 {Human (Homo sapiens) [TaxId: 9606]}
          Length = 102

 Score = 25.9 bits (56), Expect = 2.1
 Identities = 8/61 (13%), Positives = 19/61 (31%), Gaps = 3/61 (4%)

Query: 145 GGRIEEYIPDKETRKARSLKYSELTDPAISRKIAEKMADIHLMQIPVVKEPTWLWDTIQR 204
           G  + + +               +  P    +     A   + + PVV    W+ D++  
Sbjct: 31  GASVVKELSSFTLGTGVHPIV--VVQPDAWTEDNGFHAIGQMCEAPVVT-REWVLDSVAL 87

Query: 205 W 205
           +
Sbjct: 88  Y 88


>d3c8ja1 d.169.1.1 (A:138-259) NK cell receptor {Mouse (Mus
           musculus), ly49-c [TaxId: 10090]}
          Length = 122

 Score = 25.6 bits (55), Expect = 3.6
 Identities = 5/49 (10%), Positives = 13/49 (26%)

Query: 185 HLMQIPVVKEPTWLWDTIQRWLNTLYLKNTGGNGTAEWRNGETLATECH 233
            +++I    E  +L   +      + L          W +      +  
Sbjct: 36  PILKIEDEDELKFLQRHVIPGNYWIGLSYDKKKKEWAWIDNGPSKLDMK 84


>d1qo3c_ d.169.1.1 (C:) NK cell receptor {Mouse (Mus musculus),
           ly49-a [TaxId: 10090]}
          Length = 133

 Score = 24.8 bits (53), Expect = 6.4
 Identities = 6/49 (12%), Positives = 13/49 (26%)

Query: 185 HLMQIPVVKEPTWLWDTIQRWLNTLYLKNTGGNGTAEWRNGETLATECH 233
            L++I    E  +L   +      + L          W +        +
Sbjct: 48  SLLKIDDEDELKFLQLVVPSDSCWVGLSYDNKKKDWAWIDNRPSKLALN 96


>d1uwfa1 b.2.3.2 (A:1-158) Mannose-specific adhesin FimH
           {Escherichia coli [TaxId: 562]}
          Length = 158

 Score = 25.1 bits (55), Expect = 6.7
 Identities = 7/30 (23%), Positives = 10/30 (33%), Gaps = 1/30 (3%)

Query: 208 TLYLKNTGGNGTAEWRNGETLAT-ECHKKN 236
            LYL      G    + G  +A     + N
Sbjct: 106 ALYLTPVSSAGGVAIKAGSLIAVLILRQTN 135


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.318    0.135    0.402 

Gapped
Lambda     K      H
   0.267   0.0466    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 957,223
Number of extensions: 42444
Number of successful extensions: 85
Number of sequences better than 10.0: 1
Number of HSP's gapped: 81
Number of HSP's successfully gapped: 9
Length of query: 256
Length of database: 2,407,596
Length adjustment: 83
Effective length of query: 173
Effective length of database: 1,268,006
Effective search space: 219365038
Effective search space used: 219365038
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 52 (24.5 bits)