Query psy15663
Match_columns 179
No_of_seqs 182 out of 748
Neff 6.1
Searched_HMMs 46136
Date Fri Aug 16 18:25:14 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy15663.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/15663hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG4193|consensus 99.9 8.2E-27 1.8E-31 217.5 11.2 142 28-176 258-412 (610)
2 KOG4289|consensus 99.9 2E-22 4.3E-27 196.3 13.0 137 24-176 2106-2252(2531)
3 PF00002 7tm_2: 7 transmembran 99.7 8.5E-19 1.8E-23 144.4 0.7 93 82-177 1-99 (242)
4 KOG4564|consensus 99.3 4.8E-12 1E-16 115.4 10.4 89 84-175 147-254 (473)
5 PF05462 Dicty_CAR: Slime mold 98.3 3.7E-06 8E-11 73.3 9.9 97 79-178 4-103 (303)
6 PF11710 Git3: G protein-coupl 97.1 0.0044 9.5E-08 50.9 9.7 91 83-176 2-100 (201)
7 smart00303 GPS G-protein-coupl 97.0 0.00033 7.2E-09 45.1 1.2 35 34-74 4-46 (49)
8 PF01825 GPS: Latrophilin/CL-1 97.0 0.00023 4.9E-09 44.9 0.3 33 34-72 4-44 (44)
9 PF01534 Frizzled: Frizzled/Sm 94.3 0.13 2.9E-06 45.4 6.5 89 83-174 10-118 (328)
10 KOG4193|consensus 94.0 0.038 8.2E-07 52.7 2.6 36 30-65 427-465 (610)
11 PF02101 Ocular_alb: Ocular al 91.9 1.3 2.7E-05 40.3 9.1 93 86-178 26-144 (405)
12 PF00002 7tm_2: 7 transmembran 89.2 0.11 2.5E-06 42.4 0.0 38 27-65 109-146 (242)
13 PF04148 Erv26: Transmembrane 84.8 13 0.00029 31.1 9.9 79 83-164 3-83 (211)
14 KOG4289|consensus 81.8 7.1 0.00015 41.3 8.3 94 29-141 2263-2358(2531)
15 PHA03234 DNA packaging protein 57.5 1.3E+02 0.0028 26.2 10.0 56 119-174 69-129 (338)
16 PF05297 Herpes_LMP1: Herpesvi 50.2 5.3 0.00011 35.3 0.0 50 89-139 106-155 (381)
17 PF00001 7tm_1: 7 transmembran 46.7 1.1E+02 0.0024 23.4 7.1 54 121-174 21-81 (257)
18 PHA03087 G protein-coupled che 42.0 1.7E+02 0.0037 24.7 8.1 86 87-173 43-134 (335)
19 PF15050 SCIMP: SCIMP protein 37.8 63 0.0014 25.0 4.1 27 91-117 13-39 (133)
20 PHA02638 CC chemokine receptor 37.2 3.1E+02 0.0068 24.7 10.3 29 146-174 164-192 (417)
21 PHA03235 DNA packaging protein 32.1 3.8E+02 0.0082 24.1 10.3 28 147-174 102-129 (409)
22 PF15020 CATSPERD: Cation chan 32.0 90 0.0019 30.9 5.1 64 60-130 665-728 (733)
23 PF04238 DUF420: Protein of un 28.5 2.5E+02 0.0054 21.6 6.2 19 122-140 33-51 (133)
24 COG2322 Predicted membrane pro 28.2 2.5E+02 0.0053 22.9 6.3 50 81-139 42-91 (177)
25 PF01484 Col_cuticle_N: Nemato 27.5 1.5E+02 0.0034 18.2 4.8 27 87-113 2-28 (53)
26 PF05393 Hum_adeno_E3A: Human 25.7 1E+02 0.0022 22.6 3.3 19 100-118 45-63 (94)
27 PHA02690 hypothetical protein; 24.0 2.4E+02 0.0051 20.3 4.8 44 122-167 44-89 (90)
28 PHA00094 VI minor coat protein 23.5 2.8E+02 0.0062 21.0 5.5 44 95-140 13-56 (112)
29 KOG4050|consensus 23.4 4.1E+02 0.0089 21.7 8.2 53 122-174 78-136 (188)
30 PF10323 7TM_GPCR_Srv: Serpent 21.3 3.9E+02 0.0084 22.6 6.7 19 29-47 119-137 (283)
No 1
>KOG4193|consensus
Probab=99.94 E-value=8.2e-27 Score=217.50 Aligned_cols=142 Identities=20% Similarity=0.355 Sum_probs=117.3
Q ss_pred CCeeeEEEeecCeeeeeeccccceecCCC--------CccccccCCCCcccccccC----CCCCCCccchhhHHhhHHHH
Q psy15663 28 KPILGIYMVGYGISLIICGLSSAVNMRGY--------AGQAYCFLSPGPALIMRGP----GSGAPARAFHPIVYIGTFIG 95 (179)
Q Consensus 28 ~p~l~~~~v~w~~~~~i~G~~~a~n~~~y--------~t~~~C~~~~sFAvLm~~~----~~~~~~~~L~~ityiGc~vS 95 (179)
++..+--|++|+++ +-.+-|...++ .+.|.|.|+++||++|+.+ .+......++.++++||++|
T Consensus 258 ~~~~~~~c~~w~~~----~~~~~ws~~gc~~~~~~~~~~~c~C~hltsFavlm~~~~~~~~~~~~~~~l~~i~~VG~~iS 333 (610)
T KOG4193|consen 258 DKDLNPLCVFWNLS----SMGGYWSTEGCSLETSNETSTICACNHLTSFAVLMAHSDVAIEDAVLTLLLDILSTVGCIIS 333 (610)
T ss_pred ccccCcceeeccCC----CCCCccccCCceeeEeecCceEEEeccchhHHHhccccccccccchhHHHHhhhhhhhhHHH
Confidence 33445557999998 11223333332 2449999999999999853 45566678888999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHhhccccccccc-hhHHHHHHHHHHHHHHHHHHHHHHHh
Q psy15663 96 VTCLLTASLSYITCYAAIAMGEKMKHALVHTWLCMSVFCLVFALGLRQTEAER-LCQWIGVALHYFCLCSLFWMAVTVKY 174 (179)
Q Consensus 96 l~~L~ltiit~~~~~~~~r~~~~~~~i~~NL~~aLll~~l~Fl~gi~~t~~~~-~C~~va~lLHYf~LssF~WMlvEa~~ 174 (179)
++||++++++|+.+++ +|..| ..+|+|+|+||++++++|++++..+..+. .|.++|++||||+|++|+||++||+|
T Consensus 334 lvcL~lti~ty~~~~~-l~~~~--~~i~~~l~~~L~l~~l~fL~~~~~~~~~~~~C~~~a~llhff~LaaF~Wm~leg~h 410 (610)
T KOG4193|consen 334 LVCLLLTIATYLLFRK-LQNDR--TKIHINLCLCLFLAELLFLLGIDRTSTSVVLCIAAAILLHFFFLAAFFWMLLEGFH 410 (610)
T ss_pred HHHHHHHHHHHHHHHH-HHhhc--chhHHHHHHHHHHHHHHHhcccccccCcccccHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999986 56666 34999999999999999999999998888 99999999999999999999999998
Q ss_pred hh
Q psy15663 175 YM 176 (179)
Q Consensus 175 ~~ 176 (179)
+|
T Consensus 411 l~ 412 (610)
T KOG4193|consen 411 LY 412 (610)
T ss_pred HH
Confidence 66
No 2
>KOG4289|consensus
Probab=99.88 E-value=2e-22 Score=196.33 Aligned_cols=137 Identities=19% Similarity=0.270 Sum_probs=119.2
Q ss_pred CCCCCCeeeEEEeecCeeeeeeccccceecCCC------Ccc--ccccCCCCcccccc-cCCCCCCCccchhhHHhhHHH
Q psy15663 24 IVVHKPILGIYMVGYGISLIICGLSSAVNMRGY------AGQ--AYCFLSPGPALIMR-GPGSGAPARAFHPIVYIGTFI 94 (179)
Q Consensus 24 ~~~~~p~l~~~~v~w~~~~~i~G~~~a~n~~~y------~t~--~~C~~~~sFAvLm~-~~~~~~~~~~L~~ityiGc~v 94 (179)
...+||+ ||+|| +-+|.|..+++ ++| |+|++..+||++|+ ++++.++...|++.||+-.++
T Consensus 2106 ~~rtkpi----CV~wd------e~tG~WtARgcelv~rN~tHaaCqcnr~gsF~vlmd~s~re~g~~~~l~~~t~a~~gv 2175 (2531)
T KOG4289|consen 2106 EERTKPI----CVFWD------EGTGGWTARGCELVGRNLTHAACQCNRTGSFAVLMDDSRRENGEALPLKMTTYAAVGV 2175 (2531)
T ss_pred cCcccce----EEEEc------CCCCceeeccceeeccccceeeeeeccceeEEEEEccCcccccceehhhhhhHHHHHH
Confidence 4567788 59999 34688998885 566 99999999999999 455677888999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHhcccchHH-HHHHHHHHHHHHHHHHhhccccccccchhHHHHHHHHHHHHHHHHHHHHHHH
Q psy15663 95 GVTCLLTASLSYITCYAAIAMGEKMKH-ALVHTWLCMSVFCLVFALGLRQTEAERLCQWIGVALHYFCLCSLFWMAVTVK 173 (179)
Q Consensus 95 Sl~~L~ltiit~~~~~~~~r~~~~~~~-i~~NL~~aLll~~l~Fl~gi~~t~~~~~C~~va~lLHYf~LssF~WMlvEa~ 173 (179)
|++.|+++++...+.| .+|+ +.| ||.||.+||.++|++|+.||++ |+..|+++|++|||+++++|+|.++||+
T Consensus 2176 slaal~lt~~llls~R-sLks---n~~~I~~~l~~Al~l~~L~Fv~gi~~--nq~~CtvvailLhf~~~stFaWlfl~gL 2249 (2531)
T KOG4289|consen 2176 SLAALLLTFLLLLSLR-SLKS---NSHGIHFNLAAALGLAQLVFVLGINQ--NQFYCTVVAILLHFTYLSTFAWLFLEGL 2249 (2531)
T ss_pred HHHHHHHHHHHHHHHH-HHhh---cchhhhhHHHHHHhHHHHHhhhhccc--CchhhHHHHHHHHHHHhhhHHHHHHHHH
Confidence 9999999999886644 4554 334 9999999999999999999999 9999999999999999999999999999
Q ss_pred hhh
Q psy15663 174 YYM 176 (179)
Q Consensus 174 ~~~ 176 (179)
|+|
T Consensus 2250 hlY 2252 (2531)
T KOG4289|consen 2250 HLY 2252 (2531)
T ss_pred HHH
Confidence 865
No 3
>PF00002 7tm_2: 7 transmembrane receptor (Secretin family); InterPro: IPR000832 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes). They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The secretin-like GPCRs include secretin [], calcitonin [], parathyroid hormone/parathyroid hormone-related peptides [] and vasoactive intestinal peptide [], all of which activate adenylyl cyclase and the phosphatidyl-inositol-calcium pathway. These receptors contain seven transmembrane regions, in a manner reminiscent of the rhodopsins and other receptors believed to interact with G-proteins (however there is no significant sequence identity between these families, the secretin-like receptors thus bear their own unique '7TM' signature). Their N terminus is probably located on the extracellular side of the membrane and potentially glycosylated. This N-terminal region contains a long conserved region which allow the binding of large peptidic ligand such as glucagon, secretin, VIP and PACAP; this region contains five conserved cysteines residues which could be involved in disulphide bond. The C-terminal region of these receptor is probably cytoplasmic. Every receptor gene in this family is encoded on multiple exons, and several of these genes are alternatively spliced to yield functionally distinct products. ; GO: 0004930 G-protein coupled receptor activity, 0007186 G-protein coupled receptor protein signaling pathway, 0016021 integral to membrane; PDB: 3L2J_A 1BL1_A.
Probab=99.72 E-value=8.5e-19 Score=144.44 Aligned_cols=93 Identities=29% Similarity=0.521 Sum_probs=10.2
Q ss_pred ccchhhHHhhHHHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHhhccccccccch------hHHHHH
Q psy15663 82 RAFHPIVYIGTFIGVTCLLTASLSYITCYAAIAMGEKMKHALVHTWLCMSVFCLVFALGLRQTEAERL------CQWIGV 155 (179)
Q Consensus 82 ~~L~~ityiGc~vSl~~L~ltiit~~~~~~~~r~~~~~~~i~~NL~~aLll~~l~Fl~gi~~t~~~~~------C~~va~ 155 (179)
++|++++++||++|++++++++++|..++ .+|..| .++|+|+++|+++.++.|+++..++.++.. |.+.|+
T Consensus 1 ~~l~~i~~vg~~~Si~~ll~~i~~~~~~r-~lr~~~--~~i~~~l~~sll~~~~~~l~~~~~~~~~~~~~~~~~C~~~a~ 77 (242)
T PF00002_consen 1 TALSIISYVGCSLSIICLLLTIITYLLFR-KLRSFR--NKIHLNLCLSLLLANLSFLIGISQTFSPISTTNHCLCRAIAI 77 (242)
T ss_dssp -HHHHHHHHHHH--------------------------------------------------------------------
T ss_pred CeeehHHHHHHHHHHHHHHHHHHHHHHHH-hhcccc--hhhhhhhHHHHHHHHHHHheehhhccccccccccccchhhhh
Confidence 35889999999999999999999998875 457655 349999999999999999999776655554 999999
Q ss_pred HHHHHHHHHHHHHHHHHHhhhe
Q psy15663 156 ALHYFCLCSLFWMAVTVKYYMF 177 (179)
Q Consensus 156 lLHYf~LssF~WMlvEa~~~~~ 177 (179)
++||+++++|+||++||++++.
T Consensus 78 ~~hy~~la~f~Wm~~~~~~l~~ 99 (242)
T PF00002_consen 78 LLHYFFLASFFWMLVEAFYLYR 99 (242)
T ss_dssp ----------------------
T ss_pred HhHHHHHHHHHHHHHHHHHhhe
Confidence 9999999999999999988653
No 4
>KOG4564|consensus
Probab=99.35 E-value=4.8e-12 Score=115.42 Aligned_cols=89 Identities=16% Similarity=0.295 Sum_probs=72.9
Q ss_pred chhhHHhhHHHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHhhc-------cc------------cc
Q psy15663 84 FHPIVYIGTFIGVTCLLTASLSYITCYAAIAMGEKMKHALVHTWLCMSVFCLVFALG-------LR------------QT 144 (179)
Q Consensus 84 L~~ityiGc~vSl~~L~ltiit~~~~~~~~r~~~~~~~i~~NL~~aLll~~l~Fl~g-------i~------------~t 144 (179)
++.+.++|-++|+++|+++++++..||| +|..|.. ||+||.++.++-.+..++- .. ..
T Consensus 147 ~~~lytvGyslSl~sL~vAl~If~~FR~-L~CtRn~--IH~nLF~SfiLra~~~~i~~~~l~~~~~~~~~~~~~~~~~~~ 223 (473)
T KOG4564|consen 147 LKILYTVGYSLSLVSLLVALIIFLYFRS-LHCTRNY--IHMNLFASFILRAASVLIKDLVLVVNGEQDASSDTSLHCLIS 223 (473)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhh-hcchHHH--HHHHHHHHHHHHHHHHHHHHHHhhcccccccccccccccccc
Confidence 4468899999999999999999999876 6877754 9999999988766544321 11 13
Q ss_pred cccchhHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy15663 145 EAERLCQWIGVALHYFCLCSLFWMAVTVKYY 175 (179)
Q Consensus 145 ~~~~~C~~va~lLHYf~LssF~WMlvEa~~~ 175 (179)
+++..|+++-+++|||.++.|+||++||+++
T Consensus 224 ~~~~~Ck~~~~~~~Yf~~aNf~WmlvEGlYL 254 (473)
T KOG4564|consen 224 SNPVGCKLLFVFFQYFVLANFFWMLVEGLYL 254 (473)
T ss_pred ccchhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5678899999999999999999999999764
No 5
>PF05462 Dicty_CAR: Slime mold cyclic AMP receptor
Probab=98.33 E-value=3.7e-06 Score=73.30 Aligned_cols=97 Identities=11% Similarity=0.216 Sum_probs=74.8
Q ss_pred CCCccchhhHHhhHHHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHhh---ccccccccchhHHHHH
Q psy15663 79 APARAFHPIVYIGTFIGVTCLLTASLSYITCYAAIAMGEKMKHALVHTWLCMSVFCLVFAL---GLRQTEAERLCQWIGV 155 (179)
Q Consensus 79 ~~~~~L~~ityiGc~vSl~~L~ltiit~~~~~~~~r~~~~~~~i~~NL~~aLll~~l~Fl~---gi~~t~~~~~C~~va~ 155 (179)
++.+++..+..++.++|+++.+..+++|..+++ .|. ...++..-++++-++.++..++ +.+..++...|.+.|.
T Consensus 4 ~~~~~~~~i~~~~s~lSllGclfiI~tf~~~k~-~r~--~~~rli~yl~~~~ll~~v~~~~~~~~~~~~~~s~lC~~Qaf 80 (303)
T PF05462_consen 4 QQIRTLYAIELVASVLSLLGCLFIIITFCLFKR-LRK--PINRLIFYLSIANLLTNVASMIMTLSPSAGENSFLCQFQAF 80 (303)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hCc--cHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCCcchhhHhH
Confidence 345678888999999999999999999988764 453 2334666777776766654332 2344567788999999
Q ss_pred HHHHHHHHHHHHHHHHHHhhhee
Q psy15663 156 ALHYFCLCSLFWMAVTVKYYMFV 178 (179)
Q Consensus 156 lLHYf~LssF~WMlvEa~~~~~v 178 (179)
++|||.++++.|.+.-|+|++..
T Consensus 81 liq~f~~as~lWt~~iA~nly~~ 103 (303)
T PF05462_consen 81 LIQFFMLASFLWTLCIAFNLYLT 103 (303)
T ss_pred HHHHhhHHHHHHHHHHHHHhhhe
Confidence 99999999999999999987653
No 6
>PF11710 Git3: G protein-coupled glucose receptor regulating Gpa2; InterPro: IPR023041 This entry contains a functionally uncharacterised region belonging to the Git3 G-protein coupled receptor. Git3 is one of six proteins required for glucose-triggered adenylate cyclase activation, and is a G protein-coupled receptor responsible for the activation of adenylate cyclase through Gpa2 - heterotrimeric G protein alpha subunit, part of the glucose-detection pathway. Git3 contains seven predicted transmembrane domains, a third cytoplasmic loop and a cytoplasmic tail []. This is the conserved N-terminal domain of the member proteins.
Probab=97.14 E-value=0.0044 Score=50.95 Aligned_cols=91 Identities=13% Similarity=0.125 Sum_probs=68.5
Q ss_pred cchhhHHhhHHHHHHHHHHHHHHHHHHHHHHhcccchHH-HHHHHHHHHHHHHHHHhh-c---cc---cccccchhHHHH
Q psy15663 83 AFHPIVYIGTFIGVTCLLTASLSYITCYAAIAMGEKMKH-ALVHTWLCMSVFCLVFAL-G---LR---QTEAERLCQWIG 154 (179)
Q Consensus 83 ~L~~ityiGc~vSl~~L~ltiit~~~~~~~~r~~~~~~~-i~~NL~~aLll~~l~Fl~-g---i~---~t~~~~~C~~va 154 (179)
.++..+.++..+|+++.+.++..+....+..| .-+| ..+||.+|=++-.+.|++ + +. ..++...|.+.|
T Consensus 2 ~~r~~~i~~s~lSlls~~~~l~~~~~~~~r~~---~fR~~LIl~L~~aD~~qal~~~i~~~~~l~~~~i~~~s~~C~aqG 78 (201)
T PF11710_consen 2 SLRIGSIVISALSLLSSLAVLYLFFFITYRRR---SFRHQLILNLLLADFIQALAFLISPIRWLARGGIIAPSPFCQAQG 78 (201)
T ss_pred ceeeehHHHHHHHHHHHHHHHHHHHhhhhhhh---hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCeeCCCCchhhhH
Confidence 46778888899999888777766654322222 3344 899999998888877776 3 22 124567899999
Q ss_pred HHHHHHHHHHHHHHHHHHHhhh
Q psy15663 155 VALHYFCLCSLFWMAVTVKYYM 176 (179)
Q Consensus 155 ~lLHYf~LssF~WMlvEa~~~~ 176 (179)
.+++..-.++=.|.+.-|+|.+
T Consensus 79 f~~q~g~~~sd~~ilaIAihT~ 100 (201)
T PF11710_consen 79 FFLQVGDEASDLWILAIAIHTF 100 (201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999998843
No 7
>smart00303 GPS G-protein-coupled receptor proteolytic site domain. Present in latrophilin/CL-1, sea urchin REJ and polycystin.
Probab=96.98 E-value=0.00033 Score=45.08 Aligned_cols=35 Identities=20% Similarity=0.108 Sum_probs=25.6
Q ss_pred EEeecCeeeeeeccccceecCCC--------CccccccCCCCccccccc
Q psy15663 34 YMVGYGISLIICGLSSAVNMRGY--------AGQAYCFLSPGPALIMRG 74 (179)
Q Consensus 34 ~~v~w~~~~~i~G~~~a~n~~~y--------~t~~~C~~~~sFAvLm~~ 74 (179)
.||+||... +.|+.+++ ..+|.|+|+++||++|+.
T Consensus 4 ~Cv~W~~~~------~~W~~~GC~~~~~~~~~~~C~CnHlT~Favl~~~ 46 (49)
T smart00303 4 ICVFWDESS------GEWSTRGCELLETNSTHTTCSCNHLTTFAVLMDV 46 (49)
T ss_pred EEEEecCCC------CCCccccCEEEeCCCCEEEEEEEccceEEEeEEe
Confidence 379998865 34544443 344999999999999984
No 8
>PF01825 GPS: Latrophilin/CL-1-like GPS domain; InterPro: IPR000203 This domain has been termed the GPS domain (for GPCR proteolytic site), because it contains a cleavage site in O97830 from SWISSPROT latrophilin []. However this region in latrophilin is found in many otherwise unrelated cell surface receptors []. There is no evidence currently that this domain provides a cleavage site in any of the other receptors. However the peptide bond that is cleaved in latrophilin is between Leu and Thr residues that are conserved in some of the other receptors []. GPS domains are about 50 residues long and contain either 2 or 4 cysteine residues that are likely to form disulphide bridges. Based on conservation of these cysteines the following pairing can be predicted. +-----------------+ | | +-----------------+---------------+ | | | | | XXXCXXXXXXXXXXXXXXXXXCXXXXXXXXXXXXXXXCXCXXLTXXXXXXX ^ cleavage site ; GO: 0007218 neuropeptide signaling pathway, 0016020 membrane; PDB: 4DLQ_B 4DLO_B.
Probab=96.95 E-value=0.00023 Score=44.85 Aligned_cols=33 Identities=15% Similarity=0.068 Sum_probs=22.0
Q ss_pred EEeecCeeeeeeccccceecCCC--------CccccccCCCCccccc
Q psy15663 34 YMVGYGISLIICGLSSAVNMRGY--------AGQAYCFLSPGPALIM 72 (179)
Q Consensus 34 ~~v~w~~~~~i~G~~~a~n~~~y--------~t~~~C~~~~sFAvLm 72 (179)
-|++||- ..+.|+.+++ ...|.|+|+++||+||
T Consensus 4 ~C~~Wd~------~~~~W~~~GC~~~~~~~~~~~C~C~HlT~Favlm 44 (44)
T PF01825_consen 4 QCVYWDE------GTGSWSSDGCQVVESSNSHVTCSCNHLTSFAVLM 44 (44)
T ss_dssp EEEEEET------TTEEEE-TTEEEEEEETTEEEEEECC-SEEEEEE
T ss_pred EEEEeeC------CCCCCCcccccEecccCCCEEEEeeCCCcEeEeC
Confidence 4799982 2355665554 2339999999999997
No 9
>PF01534 Frizzled: Frizzled/Smoothened family membrane region; InterPro: IPR000539 The frizzled (fz) locus of Drosophila coordinates the cytoskeletons of epidermal cells, producing a parallel array of cuticular hairs and bristles [, ]. In fz mutants, the orientation of individual hairs with respect both to their neighbours and to the organism as a whole is altered. In the wild-type wing, all hairs point towards the distal tip []. In the developing wing, fz has 2 functions: it is required for the proximal-distal transmission of an intracellular polarity signal; and it is required for cells to respond to the polarity signal. Fz produces an mRNA that encodes an integral membrane protein with 7 putative transmembrane (TM) domains. This protein should contain both extracellular and cytoplasmic domains, which could function in the transmission and interpretation of polarity information []. This signature is usually found downstream of the Fz domain (IPR000024 from INTERPRO); GO: 0007166 cell surface receptor linked signaling pathway, 0016020 membrane
Probab=94.29 E-value=0.13 Score=45.44 Aligned_cols=89 Identities=11% Similarity=0.195 Sum_probs=56.0
Q ss_pred cchhhHHhhHHHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHhhc----ccc---------------
Q psy15663 83 AFHPIVYIGTFIGVTCLLTASLSYITCYAAIAMGEKMKHALVHTWLCMSVFCLVFALG----LRQ--------------- 143 (179)
Q Consensus 83 ~L~~ityiGc~vSl~~L~ltiit~~~~~~~~r~~~~~~~i~~NL~~aLll~~l~Fl~g----i~~--------------- 143 (179)
..+.-..+-.+++.++-++|++||++-++ |.+.+.+ ..+-+++|-++..+.++++ -++
T Consensus 10 ~~~~wi~~~s~ic~~~t~ftv~Tf~id~~--rf~yPer-pi~fl~~Cy~~~s~~~l~~~~~g~~~i~C~~~~~~~~~~~~ 86 (328)
T PF01534_consen 10 FARIWIGVWSVICFISTLFTVLTFLIDRS--RFRYPER-PIIFLSFCYFIVSLGYLIRFILGRESIACRSQDGTERILVQ 86 (328)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhccc--ccCCccc-hhhHHHHHHHHHHHHHHHHHhccCCCcCCCcCCCCceeEee
Confidence 34555666667788888888899977554 3333333 3333444444444444433 111
Q ss_pred -ccccchhHHHHHHHHHHHHHHHHHHHHHHHh
Q psy15663 144 -TEAERLCQWIGVALHYFCLCSLFWMAVTVKY 174 (179)
Q Consensus 144 -t~~~~~C~~va~lLHYf~LssF~WMlvEa~~ 174 (179)
......|+++..+++||.+|+..|=.+-.+.
T Consensus 87 ~~~~~~~C~~~F~l~Yyf~mAa~~WWviLt~~ 118 (328)
T PF01534_consen 87 DGLENSSCTVVFLLLYYFGMAASLWWVILTLT 118 (328)
T ss_pred cCCCCCchhhHHHHHHHHHhHHHHHHHHHHHH
Confidence 1134579999999999999999998776543
No 10
>KOG4193|consensus
Probab=93.96 E-value=0.038 Score=52.69 Aligned_cols=36 Identities=25% Similarity=0.522 Sum_probs=29.9
Q ss_pred eeeEEEeecCeeeeeeccccceecCC---CCccccccCC
Q psy15663 30 ILGIYMVGYGISLIICGLSSAVNMRG---YAGQAYCFLS 65 (179)
Q Consensus 30 ~l~~~~v~w~~~~~i~G~~~a~n~~~---y~t~~~C~~~ 65 (179)
++-+++++||.|.++.|++.+.+-+. |++..+||..
T Consensus 427 ~l~~~~~gwg~Pavvv~Isa~~~~~~~~~~~~~~~CWl~ 465 (610)
T KOG4193|consen 427 KLLYSLYGWGVPAVVVGVSALVDPDLEGQYGTPRVCWLD 465 (610)
T ss_pred HHHHHHHHhhhhHHHHhheeEEeccCccccccCCceEEe
Confidence 34344799999999999999988888 7888999974
No 11
>PF02101 Ocular_alb: Ocular albinism type 1 protein; InterPro: IPR001414 Ocular albinism type 1 (OA1) is an X-linked disorder characterised by severe impairment of visual acuity, retinal hypopigmentation and the presence of macromelanosomes. A novel transcript from the OA1 critical region is expressed in high levels in RNA samples from retina and from melanoma and encodes a potential integral membrane protein []. This protein is of unknown function but is known to bind heterotrimeric G proteins.; GO: 0016020 membrane
Probab=91.94 E-value=1.3 Score=40.32 Aligned_cols=93 Identities=13% Similarity=0.171 Sum_probs=54.7
Q ss_pred hhHHhhHHHHHHHHHHHHHHHHHHHHHH--------hcccchHHHHHHHHHHHHHHHHHHh--h----c----ccc----
Q psy15663 86 PIVYIGTFIGVTCLLTASLSYITCYAAI--------AMGEKMKHALVHTWLCMSVFCLVFA--L----G----LRQ---- 143 (179)
Q Consensus 86 ~ityiGc~vSl~~L~ltiit~~~~~~~~--------r~~~~~~~i~~NL~~aLll~~l~Fl--~----g----i~~---- 143 (179)
+..|=+.++...++-+..-.|-++.+.. +++....+|+..+.+|=+++.+=.+ . + ++.
T Consensus 26 ~~~f~avCLgSs~l~l~gallQLlp~rr~~~~~~~~~sp~~~~rIl~~la~aDlLaclGVivRS~vWl~~p~~~~s~s~~ 105 (405)
T PF02101_consen 26 PDAFNAVCLGSSVLSLLGALLQLLPRRRSAGPRAPARSPSSSRRILFWLAVADLLACLGVIVRSSVWLGFPNFIDSISDV 105 (405)
T ss_pred hhhhhhhHHHHHHHHHHHHHHhhccccccccccccccCCcCCchhHHHHHHHHHHhhhhHHHHhhhhhcCCcccccccCC
Confidence 4556555555555544444454543210 1111123588877776665543211 1 1 111
Q ss_pred --cc--ccchhHHHHHHHHHHHHHHHHHHHHHHHhhhee
Q psy15663 144 --TE--AERLCQWIGVALHYFCLCSLFWMAVTVKYYMFV 178 (179)
Q Consensus 144 --t~--~~~~C~~va~lLHYf~LssF~WMlvEa~~~~~v 178 (179)
++ ....|...++-.||||.++|.|.+.-|+..+.+
T Consensus 106 ~~~d~wp~afCv~ss~WIq~fYsAtfwWtfcYAVDv~Lv 144 (405)
T PF02101_consen 106 NGTDIWPAAFCVGSSMWIQLFYSATFWWTFCYAVDVYLV 144 (405)
T ss_pred CCCccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhe
Confidence 11 235799999999999999999999999886554
No 12
>PF00002 7tm_2: 7 transmembrane receptor (Secretin family); InterPro: IPR000832 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes). They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The secretin-like GPCRs include secretin [], calcitonin [], parathyroid hormone/parathyroid hormone-related peptides [] and vasoactive intestinal peptide [], all of which activate adenylyl cyclase and the phosphatidyl-inositol-calcium pathway. These receptors contain seven transmembrane regions, in a manner reminiscent of the rhodopsins and other receptors believed to interact with G-proteins (however there is no significant sequence identity between these families, the secretin-like receptors thus bear their own unique '7TM' signature). Their N terminus is probably located on the extracellular side of the membrane and potentially glycosylated. This N-terminal region contains a long conserved region which allow the binding of large peptidic ligand such as glucagon, secretin, VIP and PACAP; this region contains five conserved cysteines residues which could be involved in disulphide bond. The C-terminal region of these receptor is probably cytoplasmic. Every receptor gene in this family is encoded on multiple exons, and several of these genes are alternatively spliced to yield functionally distinct products. ; GO: 0004930 G-protein coupled receptor activity, 0007186 G-protein coupled receptor protein signaling pathway, 0016021 integral to membrane; PDB: 3L2J_A 1BL1_A.
Probab=89.22 E-value=0.11 Score=42.41 Aligned_cols=38 Identities=37% Similarity=0.724 Sum_probs=0.0
Q ss_pred CCCeeeEEEeecCeeeeeeccccceecCCCCccccccCC
Q psy15663 27 HKPILGIYMVGYGISLIICGLSSAVNMRGYAGQAYCFLS 65 (179)
Q Consensus 27 ~~p~l~~~~v~w~~~~~i~G~~~a~n~~~y~t~~~C~~~ 65 (179)
++++..+++++||.|.++.+++.+.+.++|++ ..||+.
T Consensus 109 ~~~~~~~~~~gwg~P~~iv~i~~~~~~~~y~~-~~CWl~ 146 (242)
T PF00002_consen 109 RRRFWWYYLIGWGIPALIVVISVAVNSDGYGN-DNCWLS 146 (242)
T ss_dssp ---------------------------------------
T ss_pred chhhheeeeeeecCcceeeeeeeeeccccccc-cccccc
Confidence 45677889999999999999988888666665 468874
No 13
>PF04148 Erv26: Transmembrane adaptor Erv26; InterPro: IPR007277 Erv26 is an integral membrane protein that is packed into COPII vesicles and cycles between the ER and Golgi compartments. It directs pro-alkaline phosphatase into endoplasmic reticulum-derived COPII transport vesicles [].
Probab=84.80 E-value=13 Score=31.06 Aligned_cols=79 Identities=14% Similarity=0.124 Sum_probs=50.3
Q ss_pred cchhhHHhhHHHHHHHHHHHHHHHHHHHHHHhc--ccchHHHHHHHHHHHHHHHHHHhhccccccccchhHHHHHHHHHH
Q psy15663 83 AFHPIVYIGTFIGVTCLLTASLSYITCYAAIAM--GEKMKHALVHTWLCMSVFCLVFALGLRQTEAERLCQWIGVALHYF 160 (179)
Q Consensus 83 ~L~~ityiGc~vSl~~L~ltiit~~~~~~~~r~--~~~~~~i~~NL~~aLll~~l~Fl~gi~~t~~~~~C~~va~lLHYf 160 (179)
.|..++|+|..+.++.+.+++..=+..-..+-- .+.++.++..+.-+.+..++++++ -++-+..|++.+++-|+.
T Consensus 3 ~L~lls~~g~~~~~~f~tlsiAsGLyYlsElVEEht~~akril~~~I~~ii~~~vlL~~---~D~~P~~~~l~si~s~~~ 79 (211)
T PF04148_consen 3 FLPLLSYLGTVLGFVFLTLSIASGLYYLSELVEEHTVLAKRILKRLIYFIIALHVLLLL---FDGFPFWLTLFSIFSHLV 79 (211)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHh---cCCCCHHHHHHHHHHHHH
Confidence 467899999999888887777544332111100 111233666666666666665543 245677899999999998
Q ss_pred HHHH
Q psy15663 161 CLCS 164 (179)
Q Consensus 161 ~Lss 164 (179)
++..
T Consensus 80 Y~~~ 83 (211)
T PF04148_consen 80 YLRN 83 (211)
T ss_pred HHHH
Confidence 8764
No 14
>KOG4289|consensus
Probab=81.85 E-value=7.1 Score=41.35 Aligned_cols=94 Identities=28% Similarity=0.509 Sum_probs=48.1
Q ss_pred CeeeEEEeecCeeeeeeccccceecCCCCccccccCCCCcccccccCCCCCCCccchhhHHhhHHHHHHHHHHHHHHHHH
Q psy15663 29 PILGIYMVGYGISLIICGLSSAVNMRGYAGQAYCFLSPGPALIMRGPGSGAPARAFHPIVYIGTFIGVTCLLTASLSYIT 108 (179)
Q Consensus 29 p~l~~~~v~w~~~~~i~G~~~a~n~~~y~t~~~C~~~~sFAvLm~~~~~~~~~~~L~~ityiGc~vSl~~L~ltiit~~~ 108 (179)
|+=-+|+||||+|-+|.|.+ +.++ .+||+...--+ ...++--||..+.+-..+..+-.-+.
T Consensus 2263 ~mrfy~~vGwgvPa~itgla--vgld-----DfCwlS~h~~L------------iWsfagPigl~i~ms~~~~~lsa~vS 2323 (2531)
T KOG4289|consen 2263 PMRFYYLVGWGVPALITGLA--VGLD-----DFCWLSPHDTL------------IWSFAGPIGLVILMSFYAAALSARVS 2323 (2531)
T ss_pred ceeEEEEeecchhhheeeee--eccc-----ceeecccchhe------------eeeecccceeeehHHHHHHHHHHHHh
Confidence 44446789999999999974 4444 78997422222 22233334544444333333333334
Q ss_pred HHHHHhc-ccc-hHHHHHHHHHHHHHHHHHHhhcc
Q psy15663 109 CYAAIAM-GEK-MKHALVHTWLCMSVFCLVFALGL 141 (179)
Q Consensus 109 ~~~~~r~-~~~-~~~i~~NL~~aLll~~l~Fl~gi 141 (179)
+.|.... ..| +-..+-+..+-|++....++.|+
T Consensus 2324 c~~k~~~f~kK~~v~~lq~~fl~llllsatwl~~l 2358 (2531)
T KOG4289|consen 2324 CHKKYQVFVKKGNVSVLQHSFLLLLLLSATWLLGL 2358 (2531)
T ss_pred hhhhheeeeeccchhhhHHHHHHHHHHHHHHHHHH
Confidence 4432111 011 11245555555666666666663
No 15
>PHA03234 DNA packaging protein UL33; Provisional
Probab=57.48 E-value=1.3e+02 Score=26.20 Aligned_cols=56 Identities=18% Similarity=0.231 Sum_probs=33.9
Q ss_pred hHHHHHHHHHHHHHHHHH--Hhhcccc---ccccchhHHHHHHHHHHHHHHHHHHHHHHHh
Q psy15663 119 MKHALVHTWLCMSVFCLV--FALGLRQ---TEAERLCQWIGVALHYFCLCSLFWMAVTVKY 174 (179)
Q Consensus 119 ~~~i~~NL~~aLll~~l~--Fl~gi~~---t~~~~~C~~va~lLHYf~LssF~WMlvEa~~ 174 (179)
+...+.||.+|=++.-+. |..-... .-.+..|++.+.+.....-++..-+..-+++
T Consensus 69 tn~fi~NLAvaDLL~~l~lp~~~~~~~~~w~fG~~lCk~~~~~~~~~~~~Si~~L~~ISiD 129 (338)
T PHA03234 69 TSFYLITLFASDFLHMLCVFFLTLNREALFNFNQAFCQCVLFIYHASCSYSICMLAIIATI 129 (338)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhCCccCchhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334778887664433221 1111111 1256789999998888887777777776665
No 16
>PF05297 Herpes_LMP1: Herpesvirus latent membrane protein 1 (LMP1); InterPro: IPR007961 This family consists of several latent membrane protein 1 or LMP1s mostly from Epstein-Barr virus (strain GD1) (HHV-4) (Human herpesvirus 4). LMP1 of HHV-4 is a 62-65 kDa plasma membrane protein possessing six membrane spanning regions, a short cytoplasmic N terminus and a long cytoplasmic carboxy tail of 200 amino acids. HHV-4 virus latent membrane protein 1 (LMP1) is essential for HHV-4 mediated transformation and has been associated with several cases of malignancies. HHV-4-like viruses in Macaca fascicularis (Cynomolgus monkeys) have been associated with high lymphoma rates in immunosuppressed monkeys [].; GO: 0019087 transformation of host cell by virus, 0016021 integral to membrane; PDB: 1CZY_E 1ZMS_B.
Probab=50.24 E-value=5.3 Score=35.31 Aligned_cols=50 Identities=12% Similarity=0.174 Sum_probs=0.0
Q ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHhh
Q psy15663 89 YIGTFIGVTCLLTASLSYITCYAAIAMGEKMKHALVHTWLCMSVFCLVFAL 139 (179)
Q Consensus 89 yiGc~vSl~~L~ltiit~~~~~~~~r~~~~~~~i~~NL~~aLll~~l~Fl~ 139 (179)
++|..+-++|+++++..+++.| .+|.-..++-.++-+|+|.+++-++.++
T Consensus 106 F~Gi~~l~l~~lLaL~vW~Ym~-lLr~~GAs~WtiLaFcLAF~LaivlLII 155 (381)
T PF05297_consen 106 FVGIVILFLCCLLALGVWFYMW-LLRELGASFWTILAFCLAFLLAIVLLII 155 (381)
T ss_dssp ---------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHH-HHHHhhhHHHHHHHHHHHHHHHHHHHHH
Confidence 6677777777766666655555 3343333322566677776655554443
No 17
>PF00001 7tm_1: 7 transmembrane receptor (rhodopsin family) Rhodopsin-like GPCR superfamily signature 5-hydroxytryptamine 7 receptor signature bradykinin receptor signature gastrin receptor signature melatonin receptor signature olfactory receptor signature; InterPro: IPR000276 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes). They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The rhodopsin-like GPCRs themselves represent a widespread protein family that includes hormone, neurotransmitter and light receptors, all of which transduce extracellular signals through interaction with guanine nucleotide-binding (G) proteins. Although their activating ligands vary widely in structure and character, the amino acid sequences of the receptors are very similar and are believed to adopt a common structural framework comprising 7 transmembrane (TM) helices [, , ].; GO: 0007186 G-protein coupled receptor protein signaling pathway, 0016021 integral to membrane; PDB: 2KI9_A 3QAK_A 2YDV_A 3VGA_A 3PWH_A 3RFM_A 3EML_A 3VG9_A 3REY_A 3UZA_A ....
Probab=46.72 E-value=1.1e+02 Score=23.39 Aligned_cols=54 Identities=15% Similarity=0.104 Sum_probs=34.0
Q ss_pred HHHHHHHHHHHHHHHHHhhc----c---ccccccchhHHHHHHHHHHHHHHHHHHHHHHHh
Q psy15663 121 HALVHTWLCMSVFCLVFALG----L---RQTEAERLCQWIGVALHYFCLCSLFWMAVTVKY 174 (179)
Q Consensus 121 ~i~~NL~~aLll~~l~Fl~g----i---~~t~~~~~C~~va~lLHYf~LssF~WMlvEa~~ 174 (179)
..+.||+++=++..+..... . +...++..|.+.+.+...+..++...+..-+++
T Consensus 21 ~~l~~Lav~Dll~~~~~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~~~s~~~~~~is~d 81 (257)
T PF00001_consen 21 ILLLNLAVADLLVGLFCIPFYIYSLLFDDWIFSSFLCRIFGFLFYFSSFSSIFSLVAISID 81 (257)
T ss_dssp HHHHHHHHHHHHHHHTHHHHHHHHHHHSSCTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhcccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 36777766554443221111 1 122355789999998888888888877777755
No 18
>PHA03087 G protein-coupled chemokine receptor-like protein; Provisional
Probab=41.98 E-value=1.7e+02 Score=24.74 Aligned_cols=86 Identities=10% Similarity=0.059 Sum_probs=42.1
Q ss_pred hHHhhHHHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHhhcc-----c-cccccchhHHHHHHHHHH
Q psy15663 87 IVYIGTFIGVTCLLTASLSYITCYAAIAMGEKMKHALVHTWLCMSVFCLVFALGL-----R-QTEAERLCQWIGVALHYF 160 (179)
Q Consensus 87 ityiGc~vSl~~L~ltiit~~~~~~~~r~~~~~~~i~~NL~~aLll~~l~Fl~gi-----~-~t~~~~~C~~va~lLHYf 160 (179)
+..+-..+.+++++.-.+......+. |.+++..-.+.|++++=++..+.....+ . ...++..|...+.+....
T Consensus 43 ~~~~~~~i~~~gl~gN~lvl~~~~~~-~~~~~~~~ll~~laisDll~~~~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~ 121 (335)
T PHA03087 43 LIVVYSTIFFFGLVGNIIVIYVLTKT-KIKTPMDIYLLNLAVSDLLFVMTLPFQIYYYILFQWSFGEFACKIVSGLYYIG 121 (335)
T ss_pred HHHHHHHHHHHHHHhhHhEEeeehhc-cccCchHHHHHHHHHHHHHHHHhHHHHHHHHhCCCCCCCcHHHHHHHHHHHHH
Confidence 33344445555555554443334443 3322233366777766554332222111 1 123567899888877666
Q ss_pred HHHHHHHHHHHHH
Q psy15663 161 CLCSLFWMAVTVK 173 (179)
Q Consensus 161 ~LssF~WMlvEa~ 173 (179)
..++..=+..-++
T Consensus 122 ~~~S~~~l~~iai 134 (335)
T PHA03087 122 FYNSMNFITVMSV 134 (335)
T ss_pred HHHHHHHHHHHHH
Confidence 6555443444443
No 19
>PF15050 SCIMP: SCIMP protein
Probab=37.78 E-value=63 Score=24.95 Aligned_cols=27 Identities=15% Similarity=0.280 Sum_probs=19.7
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHhccc
Q psy15663 91 GTFIGVTCLLTASLSYITCYAAIAMGE 117 (179)
Q Consensus 91 Gc~vSl~~L~ltiit~~~~~~~~r~~~ 117 (179)
..+|-++++.+.+|.|.++++.+|..+
T Consensus 13 AVaII~vS~~lglIlyCvcR~~lRqGk 39 (133)
T PF15050_consen 13 AVAIILVSVVLGLILYCVCRWQLRQGK 39 (133)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHccc
Confidence 344666788889999999987666533
No 20
>PHA02638 CC chemokine receptor-like protein; Provisional
Probab=37.15 E-value=3.1e+02 Score=24.65 Aligned_cols=29 Identities=10% Similarity=0.236 Sum_probs=19.2
Q ss_pred ccchhHHHHHHHHHHHHHHHHHHHHHHHh
Q psy15663 146 AERLCQWIGVALHYFCLCSLFWMAVTVKY 174 (179)
Q Consensus 146 ~~~~C~~va~lLHYf~LssF~WMlvEa~~ 174 (179)
.+..|++.+.+....+.++..=+.+-++.
T Consensus 164 g~~~Ck~~~~l~~~~~~~Si~~L~~isiD 192 (417)
T PHA02638 164 GDFMCKVISASYYIGFFSNMFLITLMSID 192 (417)
T ss_pred cccchhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 45679999888777776665544444443
No 21
>PHA03235 DNA packaging protein UL33; Provisional
Probab=32.08 E-value=3.8e+02 Score=24.11 Aligned_cols=28 Identities=11% Similarity=0.140 Sum_probs=18.2
Q ss_pred cchhHHHHHHHHHHHHHHHHHHHHHHHh
Q psy15663 147 ERLCQWIGVALHYFCLCSLFWMAVTVKY 174 (179)
Q Consensus 147 ~~~C~~va~lLHYf~LssF~WMlvEa~~ 174 (179)
...|++.+.+.-....+++.=+..-+++
T Consensus 102 ~~~Ck~~~~l~~~~~~~Si~tL~~ISiD 129 (409)
T PHA03235 102 VAGCKFASLLYYASCTVGFATVALIAAD 129 (409)
T ss_pred CCeehhHHHHHHHHHHHHHHHHHHHHHH
Confidence 4689999877666666655545555544
No 22
>PF15020 CATSPERD: Cation channel sperm-associated protein subunit delta
Probab=32.04 E-value=90 Score=30.86 Aligned_cols=64 Identities=11% Similarity=0.148 Sum_probs=34.4
Q ss_pred ccccCCCCcccccccCCCCCCCccchhhHHhhHHHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHH
Q psy15663 60 AYCFLSPGPALIMRGPGSGAPARAFHPIVYIGTFIGVTCLLTASLSYITCYAAIAMGEKMKHALVHTWLCM 130 (179)
Q Consensus 60 ~~C~~~~sFAvLm~~~~~~~~~~~L~~ityiGc~vSl~~L~ltiit~~~~~~~~r~~~~~~~i~~NL~~aL 130 (179)
.||++.|.|||..-. .-+.......++.+++..++ ++++.......|.+++++-. -...+|..|
T Consensus 665 SyC~L~t~Fai~v~G--~~P~~~~~~~~~~l~~~~~~---~~si~~~y~~pk~~~~~~g~--~~~~~~~~~ 728 (733)
T PF15020_consen 665 SYCNLTTIFAIYVYG--AIPRPSVYPVATILLLLMLI---FFSILLAYMIPKLLKTERGL--RVKGFWYQL 728 (733)
T ss_pred CccceEEEEEEEEec--cCCccccchHHHHHHHHHHH---HHHHHHHHHhHHHhhhhhcc--chhHHHHHH
Confidence 799999999998752 21223333444555543322 23333322345666665532 466666554
No 23
>PF04238 DUF420: Protein of unknown function (DUF420); InterPro: IPR007352 This is a predicted membrane protein with four transmembrane helices.
Probab=28.52 E-value=2.5e+02 Score=21.62 Aligned_cols=19 Identities=16% Similarity=0.130 Sum_probs=14.4
Q ss_pred HHHHHHHHHHHHHHHHhhc
Q psy15663 122 ALVHTWLCMSVFCLVFALG 140 (179)
Q Consensus 122 i~~NL~~aLll~~l~Fl~g 140 (179)
.|.+...+.+....+|++.
T Consensus 33 ~Hr~~Ml~a~~ls~lFlv~ 51 (133)
T PF04238_consen 33 LHRKLMLTAFVLSALFLVS 51 (133)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 6788887777777777765
No 24
>COG2322 Predicted membrane protein [Function unknown]
Probab=28.16 E-value=2.5e+02 Score=22.94 Aligned_cols=50 Identities=18% Similarity=0.138 Sum_probs=26.6
Q ss_pred CccchhhHHhhHHHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHhh
Q psy15663 81 ARAFHPIVYIGTFIGVTCLLTASLSYITCYAAIAMGEKMKHALVHTWLCMSVFCLVFAL 139 (179)
Q Consensus 81 ~~~L~~ityiGc~vSl~~L~ltiit~~~~~~~~r~~~~~~~i~~NL~~aLll~~l~Fl~ 139 (179)
...+..+.-+-.++|...++..+ +.+|+.+ ..-|++..++-+..-++|++
T Consensus 42 v~i~p~lnai~~~~s~~~llag~-------~~Ikrg~--i~~Hk~aMltA~~l~l~Flv 91 (177)
T COG2322 42 VEILPMLNAIFNSLSFIFLLAGW-------RLIKRGN--IEKHKRAMLTAFTLALVFLV 91 (177)
T ss_pred chhhhhHHHHHHHHHHHHHHHHH-------HHHHhcc--HHHHHHHHHHHHHHHHHHHH
Confidence 34444555555555554444333 3334322 23578877777777766664
No 25
>PF01484 Col_cuticle_N: Nematode cuticle collagen N-terminal domain; InterPro: IPR002486 The function of this domain is unknown. It is found in the N-terminal region of nematode cuticle collagens (see IPR008160 from INTERPRO). Cuticle is a tough elastic structure secreted by hypodermal cells and is primarily composed of collagen proteins [, ].; GO: 0042302 structural constituent of cuticle
Probab=27.50 E-value=1.5e+02 Score=18.16 Aligned_cols=27 Identities=15% Similarity=0.364 Sum_probs=18.5
Q ss_pred hHHhhHHHHHHHHHHHHHHHHHHHHHH
Q psy15663 87 IVYIGTFIGVTCLLTASLSYITCYAAI 113 (179)
Q Consensus 87 ityiGc~vSl~~L~ltiit~~~~~~~~ 113 (179)
+.|.++++|.++++.++++.-.....+
T Consensus 2 va~~a~~~s~~ai~~~l~~~p~i~~~i 28 (53)
T PF01484_consen 2 VAYGAIVVSTVAILSCLITVPSIYNDI 28 (53)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 457788888888887777665544433
No 26
>PF05393 Hum_adeno_E3A: Human adenovirus early E3A glycoprotein; InterPro: IPR008652 This family consists of several early glycoproteins (E3A), from human adenovirus type 2.; GO: 0016021 integral to membrane
Probab=25.75 E-value=1e+02 Score=22.56 Aligned_cols=19 Identities=5% Similarity=0.253 Sum_probs=11.6
Q ss_pred HHHHHHHHHHHHHHhcccc
Q psy15663 100 LTASLSYITCYAAIAMGEK 118 (179)
Q Consensus 100 ~ltiit~~~~~~~~r~~~~ 118 (179)
++.++.|++|++.+|+.|.
T Consensus 45 il~VilwfvCC~kRkrsRr 63 (94)
T PF05393_consen 45 ILLVILWFVCCKKRKRSRR 63 (94)
T ss_pred HHHHHHHHHHHHHhhhccC
Confidence 4455677777766555543
No 27
>PHA02690 hypothetical protein; Provisional
Probab=23.95 E-value=2.4e+02 Score=20.28 Aligned_cols=44 Identities=20% Similarity=0.410 Sum_probs=25.8
Q ss_pred HHHHHHHHHHHHHHHHhhccccccccchhH--HHHHHHHHHHHHHHHH
Q psy15663 122 ALVHTWLCMSVFCLVFALGLRQTEAERLCQ--WIGVALHYFCLCSLFW 167 (179)
Q Consensus 122 i~~NL~~aLll~~l~Fl~gi~~t~~~~~C~--~va~lLHYf~LssF~W 167 (179)
.+-.|++.++...-+.+=-+ -.|+..|. +.|+.+-|.+++-|-|
T Consensus 44 lLfDL~lTvfV~myiv~Rl~--~RN~gacamlAlaAA~~yLflcL~y~ 89 (90)
T PHA02690 44 LLFDLLLTVFVVMYIVFRLI--WRNPGACAMLALAAAVYYLFLCLFYW 89 (90)
T ss_pred HHHHHHHHHHHHHHHHHHHH--HcChhHHHHHHHHHHHHHHHHHHHhc
Confidence 56667766655432211111 24566664 4556788888888877
No 28
>PHA00094 VI minor coat protein
Probab=23.53 E-value=2.8e+02 Score=20.97 Aligned_cols=44 Identities=5% Similarity=0.042 Sum_probs=24.3
Q ss_pred HHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHhhc
Q psy15663 95 GVTCLLTASLSYITCYAAIAMGEKMKHALVHTWLCMSVFCLVFALG 140 (179)
Q Consensus 95 Sl~~L~ltiit~~~~~~~~r~~~~~~~i~~NL~~aLll~~l~Fl~g 140 (179)
++.+++.+++-|+.-+..++..|.. ..+.+.+++.+....++.+
T Consensus 13 fi~~la~~~~gyfa~f~tk~iarn~--liisl~igLil~~~~~l~~ 56 (112)
T PHA00094 13 FLGTLAANLIGYFAKFFTRGIARNA--LAISLFIGLILGLNSALVA 56 (112)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHH
Confidence 4567778888886655433322222 4555556666655555443
No 29
>KOG4050|consensus
Probab=23.38 E-value=4.1e+02 Score=21.65 Aligned_cols=53 Identities=13% Similarity=0.023 Sum_probs=33.5
Q ss_pred HHHHHHHHHHHHHHHHhhccc------cccccchhHHHHHHHHHHHHHHHHHHHHHHHh
Q psy15663 122 ALVHTWLCMSVFCLVFALGLR------QTEAERLCQWIGVALHYFCLCSLFWMAVTVKY 174 (179)
Q Consensus 122 i~~NL~~aLll~~l~Fl~gi~------~t~~~~~C~~va~lLHYf~LssF~WMlvEa~~ 174 (179)
++--+.+++.+..++|-..-. .++++..|.+...+--||+++.|.=.++-++.
T Consensus 78 ilglivvvlvi~~liwa~~~~a~~krmr~~hp~~~l~gvllv~yfli~v~~~vlv~~F~ 136 (188)
T KOG4050|consen 78 ILGLIVVVLVIGTLIWAASADANIKRMRTDHPLVTLAGVLLVGYFLISVFGGVLVFAFA 136 (188)
T ss_pred HHHHHHHHHHHHHHHHHHhccHHHHHHhhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444555555566655422 24677788888888888888887766665543
No 30
>PF10323 7TM_GPCR_Srv: Serpentine type 7TM GPCR chemoreceptor Srv; InterPro: IPR019426 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes). They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The nematode Caenorhabditis elegans has only 14 types of chemosensory neuron, yet is able to sense and respond to several hundred different chemicals because each neuron detects several stimuli []. Chemoperception is one of the central senses of soil nematodes like C. elegans which are otherwise 'blind' and 'deaf' []. Chemoreception in C. elegans is mediated by members of the seven-transmembrane G-protein-coupled receptor class (7TM GPCRs). More than 1300 potential chemoreceptor genes have been identified in C. elegans, which are generally prefixed sr for serpentine receptor. The receptor superfamilies include Sra (Sra, Srb, Srab, Sre), Str (Srh, Str, Sri, Srd, Srj, Srm, Srn) and Srg (Srx, Srt, Srg, Sru, Srv, Srxa), as well as the families Srw, Srz, Srbc, Srsx and Srr [, , ]. Many of these proteins have homologues in Caenorhabditis briggsae. This entry represents serpentine receptor class v (Srv) from the Srg superfamily [, ]. Srg receptors contain seven hydrophobic, putative transmembrane, regions and can be distinguished from other 7TM GPCR receptors by their own characteristic TM signatures.
Probab=21.31 E-value=3.9e+02 Score=22.59 Aligned_cols=19 Identities=21% Similarity=0.142 Sum_probs=14.3
Q ss_pred CeeeEEEeecCeeeeeecc
Q psy15663 29 PILGIYMVGYGISLIICGL 47 (179)
Q Consensus 29 p~l~~~~v~w~~~~~i~G~ 47 (179)
+......+.|-.|.+++.+
T Consensus 119 ~~~~i~~i~wi~p~li~~~ 137 (283)
T PF10323_consen 119 KIWIIILIQWIPPLLISLP 137 (283)
T ss_pred chhheeeeeehhhhhheee
Confidence 4455778999999988765
Done!