RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy15663
(179 letters)
>gnl|CDD|215647 pfam00002, 7tm_2, 7 transmembrane receptor (Secretin family). This
family is known as Family B, the secretin-receptor
family or family 2 of the G-protein-coupled receptors
(GCPRs).They have been described in many animal species,
but not in plants, fungi or prokaryotes. Three distinct
sub-families are recognised. Subfamily B1 contains
classical hormone receptors, such as receptors for
secretin and glucagon, that are all involved in
cAMP-mediated signalling pathways. Subfamily B2 contains
receptors with long extracellular N-termini, such as the
leukocyte cell-surface antigen CD97 ;
calcium-independent receptors for latrotoxin, and
brain-specific angiogenesis inhibitors amongst others.
Subfamily B3 includes Methuselah and other Drosophila
proteins. Other than the typical seven-transmembrane
region, characteristic structural features include an
amino-terminal extracellular domain involved in ligand
binding, and an intracellular loop (IC3) required for
specific G-protein coupling.
Length = 239
Score = 33.7 bits (78), Expect = 0.029
Identities = 16/53 (30%), Positives = 26/53 (49%), Gaps = 6/53 (11%)
Query: 124 VHTWLCMSVFC--LVFALGLRQT----EAERLCQWIGVALHYFCLCSLFWMAV 170
+H L S ++F +G ++ +C+ + V LHYF L + FWM V
Sbjct: 39 IHLNLFASFILRAILFLVGDAVLFNSVGSDVVCKVVAVFLHYFFLANFFWMLV 91
>gnl|CDD|236448 PRK09281, PRK09281, F0F1 ATP synthase subunit alpha; Validated.
Length = 502
Score = 30.8 bits (71), Expect = 0.33
Identities = 12/27 (44%), Positives = 14/27 (51%), Gaps = 4/27 (14%)
Query: 102 ASLSYITCYAAIAMGE----KMKHALV 124
A L Y+ YA AMGE K AL+
Sbjct: 232 APLQYLAPYAGCAMGEYFMDNGKDALI 258
>gnl|CDD|235745 PRK06214, PRK06214, sulfite reductase; Provisional.
Length = 530
Score = 30.8 bits (70), Expect = 0.41
Identities = 16/36 (44%), Positives = 21/36 (58%), Gaps = 4/36 (11%)
Query: 53 MRGYAGQAYCF---LSPGPALIMRGPGSG-APARAF 84
+R Y +A+ F P +IM GPG+G AP RAF
Sbjct: 366 VRVYVQKAHGFALPADPNTPIIMVGPGTGIAPFRAF 401
>gnl|CDD|235701 PRK06116, PRK06116, glutathione reductase; Validated.
Length = 450
Score = 30.1 bits (69), Expect = 0.53
Identities = 9/32 (28%), Positives = 18/32 (56%), Gaps = 3/32 (9%)
Query: 25 VVHKP---ILGIYMVGYGISLIICGLSSAVNM 53
VV ++G++ +G+G +I G + A+ M
Sbjct: 394 VVVGKEEKVVGLHGIGFGADEMIQGFAVAIKM 425
>gnl|CDD|224169 COG1249, Lpd, Pyruvate/2-oxoglutarate dehydrogenase complex,
dihydrolipoamide dehydrogenase (E3) component, and
related enzymes [Energy production and conversion].
Length = 454
Score = 29.5 bits (67), Expect = 0.93
Identities = 14/37 (37%), Positives = 21/37 (56%), Gaps = 3/37 (8%)
Query: 24 IVVHKP---ILGIYMVGYGISLIICGLSSAVNMRGYA 57
+VV K ILG ++VG G S +I ++ A+ M A
Sbjct: 397 LVVDKETGRILGAHIVGPGASELINEIALAIEMGATA 433
>gnl|CDD|182862 PRK10953, cysJ, sulfite reductase subunit alpha; Provisional.
Length = 600
Score = 29.7 bits (67), Expect = 1.00
Identities = 12/20 (60%), Positives = 14/20 (70%), Gaps = 1/20 (5%)
Query: 66 PGPALIMRGPGSG-APARAF 84
P +IM GPG+G AP RAF
Sbjct: 452 PETPVIMIGPGTGIAPFRAF 471
>gnl|CDD|233211 TIGR00962, atpA, proton translocating ATP synthase, F1 alpha
subunit. The sequences of ATP synthase F1 alpha and
beta subunits are related and both contain a
nucleotide-binding site for ATP and ADP. They have a
common amino terminal domain but vary at the C-terminus.
The beta chain has catalytic activity, while the alpha
chain is a regulatory subunit. The alpha-subunit
contains a highly conserved adenine-specific
noncatalytic nucleotide-binding domain. The conserved
amino acid sequence is Gly-X-X-X-X-Gly-Lys. Proton
translocating ATP synthase F1, alpha subunit is
homologous to proton translocating ATP synthase
archaeal/vacuolar(V1), B subunit [Energy metabolism,
ATP-proton motive force interconversion].
Length = 501
Score = 28.9 bits (65), Expect = 1.5
Identities = 12/27 (44%), Positives = 14/27 (51%), Gaps = 4/27 (14%)
Query: 102 ASLSYITCYAAIAMGE----KMKHALV 124
ASL Y+ Y MGE KHAL+
Sbjct: 231 ASLQYLAPYTGCTMGEYFRDNGKHALI 257
>gnl|CDD|223134 COG0056, AtpA, F0F1-type ATP synthase, alpha subunit [Energy
production and conversion].
Length = 504
Score = 28.7 bits (65), Expect = 1.5
Identities = 10/28 (35%), Positives = 13/28 (46%), Gaps = 4/28 (14%)
Query: 101 TASLSYITCYAAIAMGE----KMKHALV 124
+A L Y+ YA AM E K L+
Sbjct: 231 SAPLQYLAPYAGCAMAEYFRDNGKDVLI 258
>gnl|CDD|238552 cd01132, F1_ATPase_alpha, F1 ATP synthase alpha, central domain.
The F-ATPase is found in bacterial plasma membranes,
mitochondrial inner membranes and in chloroplast
thylakoid membranes. It has also been found in the
archaea Methanosarcina barkeri. It uses a proton
gradient to drive ATP synthesis and hydrolyzes ATP to
build the proton gradient. The extrinisic membrane
domain, F1, is composed of alpha, beta, gamma, delta and
epsilon subunits with a stoichiometry of 3:3:1:1:1. The
alpha subunit of the F1 ATP synthase can bind
nucleotides, but is non-catalytic.
Length = 274
Score = 28.8 bits (65), Expect = 1.6
Identities = 12/27 (44%), Positives = 14/27 (51%), Gaps = 4/27 (14%)
Query: 102 ASLSYITCYAAIAMGE----KMKHALV 124
A L Y+ Y AMGE KHAL+
Sbjct: 139 APLQYLAPYTGCAMGEYFMDNGKHALI 165
>gnl|CDD|217412 pfam03186, CobD_Cbib, CobD/Cbib protein. This family includes CobD
proteins from a number of bacteria, in Salmonella this
protein is called Cbib. Salmonella CobD is a different
protein. This protein is involved in cobalamin
biosynthesis and is probably an enzyme responsible for
the conversion of adenosylcobyric acid to
adenosylcobinamide or adenosylcobinamide phosphate.
Length = 295
Score = 28.6 bits (65), Expect = 1.9
Identities = 19/85 (22%), Positives = 28/85 (32%), Gaps = 26/85 (30%)
Query: 78 GAPARAFHPIVYIGTFIG------------------VTCLLTASLSYITCYAAIAMGEKM 119
G P R HP+V+IG I + LL + + +A+
Sbjct: 15 GDPPRLPHPVVWIGRLISWLERRLNRGSAARRLAGALLWLLLVLPAALLGALLLAL---- 70
Query: 120 KHALVHTWL--CMSVFCLVFALGLR 142
A +H L + L L LR
Sbjct: 71 --AGLHPLLGLIVEALLLKTTLALR 93
>gnl|CDD|99796 cd06199, SiR, Cytochrome p450- like alpha subunits of E. coli
sulfite reductase (SiR) multimerize with beta subunits
to catalyze the NADPH dependent reduction of sulfite to
sulfide. Beta subunits have an Fe4S4 cluster and a
siroheme, while the alpha subunits (cysJ gene) are of
the cytochrome p450 (CyPor) family having FAD and FMN as
prosthetic groups and utilizing NADPH. Cypor (including
cyt -450 reductase, nitric oxide synthase, and
methionine synthase reductase) are ferredoxin reductase
(FNR)-like proteins with an additional N-terminal FMN
domain and a connecting sub-domain inserted within the
flavin binding portion of the FNR-like domain. The
connecting domain orients the N-terminal FMN domain with
the C-terminal FNR domain.
Length = 360
Score = 28.0 bits (63), Expect = 2.7
Identities = 11/15 (73%), Positives = 12/15 (80%), Gaps = 1/15 (6%)
Query: 71 IMRGPGSG-APARAF 84
IM GPG+G AP RAF
Sbjct: 217 IMVGPGTGIAPFRAF 231
>gnl|CDD|217252 pfam02852, Pyr_redox_dim, Pyridine nucleotide-disulphide
oxidoreductase, dimerisation domain. This family
includes both class I and class II oxidoreductases and
also NADH oxidases and peroxidases.
Length = 110
Score = 27.1 bits (61), Expect = 3.0
Identities = 9/35 (25%), Positives = 15/35 (42%), Gaps = 3/35 (8%)
Query: 24 IVVHKP---ILGIYMVGYGISLIICGLSSAVNMRG 55
+V ILG ++VG +I + A+ M
Sbjct: 53 LVADAETGRILGAHIVGPNAGELIQEAALAIKMGA 87
>gnl|CDD|99803 cd06207, CyPoR_like, NADPH cytochrome p450 reductase (CYPOR) serves
as an electron donor in several oxygenase systems and is
a component of nitric oxide synthases and methionine
synthase reductases. CYPOR transfers two electrons from
NADPH to the heme of cytochrome p450 via FAD and FMN.
Ferredoxin-NADP+ (oxido)reductase is an FAD-containing
enzyme that catalyzes the reversible electron transfer
between NADP(H) and electron carrier proteins such as
ferredoxin and flavodoxin. Isoforms of these
flavoproteins (i.e. having a non-covalently bound FAD as
a prosthetic group) are present in chloroplasts,
mitochondria, and bacteria in which they participate in
a wide variety of redox metabolic pathways. The
C-terminal domain contains most of the NADP(H) binding
residues and the N-terminal domain interacts
non-covalently with the isoalloxazine rings of the
flavin molecule which lies largely in a large gap
betweed the two domains. Ferredoxin-NADP+ reductase
first accepts one electron from reduced ferredoxin to
form a flavin semiquinone intermediate. The enzyme then
accepts a second electron to form FADH2 which then
transfers two electrons and a proton to NADP+ to form
NADPH.
Length = 382
Score = 27.6 bits (62), Expect = 3.4
Identities = 11/16 (68%), Positives = 13/16 (81%), Gaps = 1/16 (6%)
Query: 70 LIMRGPGSG-APARAF 84
+IM GPG+G AP RAF
Sbjct: 233 IIMVGPGTGLAPFRAF 248
>gnl|CDD|99779 cd06182, CYPOR_like, NADPH cytochrome p450 reductase (CYPOR) serves
as an electron donor in several oxygenase systems and is
a component of nitric oxide synthases and methionine
synthase reductases. CYPOR transfers two electrons from
NADPH to the heme of cytochrome p450 via FAD and FMN.
CYPOR has a C-terminal ferredoxin reducatase (FNR)- like
FAD and NAD binding module, an FMN-binding domain, and
an additional conecting domain (inserted within the FAD
binding region) that orients the FNR and FMN binding
domains. Ferredoxin-NADP+ (oxido)reductase is an
FAD-containing enzyme that catalyzes the reversible
electron transfer between NADP(H) and electron carrier
proteins such as ferredoxin and flavodoxin. Isoforms of
these flavoproteins (i.e. having a non-covalently bound
FAD as a prosthetic group) are present in chloroplasts,
mitochondria, and bacteria and participate in a wide
variety of redox metabolic pathways. The C-terminal
domain contains most of the NADP(H) binding residues and
the N-terminal domain interacts non-covalently with the
isoalloxazine rings of the flavin molecule which lies
largely in a large gap betweed the two domains.
Ferredoxin-NADP+ reductase first accepts one electron
from reduced ferredoxin to form a flavin semiquinone
intermediate. The enzyme then accepts a second electron
to form FADH2, which then transfers two electrons and a
proton to NADP+ to form NADPH.
Length = 267
Score = 27.3 bits (61), Expect = 4.9
Identities = 13/34 (38%), Positives = 17/34 (50%), Gaps = 11/34 (32%)
Query: 62 CFLSPGPA----------LIMRGPGSG-APARAF 84
F+ P P+ +IM GPG+G AP R F
Sbjct: 100 VFIRPAPSFRLPKDPTTPIIMVGPGTGIAPFRGF 133
>gnl|CDD|223446 COG0369, CysJ, Sulfite reductase, alpha subunit (flavoprotein)
[Inorganic ion transport and metabolism].
Length = 587
Score = 27.0 bits (60), Expect = 6.2
Identities = 11/16 (68%), Positives = 13/16 (81%), Gaps = 1/16 (6%)
Query: 70 LIMRGPGSG-APARAF 84
+IM GPG+G AP RAF
Sbjct: 443 IIMIGPGTGIAPFRAF 458
>gnl|CDD|222354 pfam13737, DDE_Tnp_1_5, Transposase DDE domain. Transposase
proteins are necessary for efficient DNA transposition.
This domain is a member of the DDE superfamily, which
contain three carboxylate residues that are believed to
be responsible for coordinating metal ions needed for
catalysis.
Length = 112
Score = 26.1 bits (58), Expect = 7.0
Identities = 11/39 (28%), Positives = 13/39 (33%), Gaps = 12/39 (30%)
Query: 133 FCL----VFALGLRQTEAERLCQWIGVALHYFCLCSLFW 167
CL +F L LRQT+ G L L
Sbjct: 40 TCLMLKVLFGLPLRQTQ--------GFVQSLLKLAGLPL 70
>gnl|CDD|99801 cd06204, CYPOR, NADPH cytochrome p450 reductase (CYPOR) serves as
an electron donor in several oxygenase systems and is a
component of nitric oxide synthases and methionine
synthase reductases. CYPOR transfers two electrons from
NADPH to the heme of cytochrome p450 via FAD and FMN.
Ferredoxin-NADP+ (oxido)reductase is an FAD-containing
enzyme that catalyzes the reversible electron transfer
between NADP(H) and electron carrier proteins such as
ferredoxin and flavodoxin. Isoforms of these
flavoproteins (i.e. having a non-covalently bound FAD as
a prosthetic group) are present in chloroplasts,
mitochondria, and bacteria in which they participate in
a wide variety of redox metabolic pathways. The
C-terminal domain contains most of the NADP(H) binding
residues and the N-terminal domain interacts
non-covalently with the isoalloxazine rings of the
flavin molecule which lies largely in a large gap
betweed the two domains. Ferredoxin-NADP+ reductase
first accepts one electron from reduced ferredoxin to
form a flavin semiquinone intermediate. The enzyme then
accepts a second electron to form FADH2 which then
transfers two electrons and a proton to NADP+ to form
NADPH.
Length = 416
Score = 26.5 bits (59), Expect = 8.5
Identities = 10/16 (62%), Positives = 12/16 (75%), Gaps = 1/16 (6%)
Query: 70 LIMRGPGSG-APARAF 84
+IM GPG+G AP R F
Sbjct: 268 VIMIGPGTGVAPFRGF 283
>gnl|CDD|235798 PRK06416, PRK06416, dihydrolipoamide dehydrogenase; Reviewed.
Length = 462
Score = 26.6 bits (60), Expect = 9.3
Identities = 9/29 (31%), Positives = 13/29 (44%)
Query: 29 PILGIYMVGYGISLIICGLSSAVNMRGYA 57
+LG +MVG S +I A+N
Sbjct: 403 EVLGAHMVGARASELIQEAQLAINWEATP 431
>gnl|CDD|99799 cd06202, Nitric_oxide_synthase, The ferredoxin-reductase (FNR) like
C-terminal domain of the nitric oxide synthase (NOS)
fuses with a heme-containing N-terminal oxidase domain.
The reductase portion is similar in structure to NADPH
dependent cytochrome-450 reductase (CYPOR), having an
inserted connecting sub-domain within the FAD binding
portion of FNR. NOS differs from CYPOR in a requirement
for the cofactor tetrahydrobiopterin and unlike most
CYPOR is dimeric. Nitric oxide synthase produces nitric
oxide in the conversion of L-arginine to L-citruline.
NOS has been implicated in a variety of processes
including cytotoxicity, anti-inflamation,
neurotransmission, and vascular smooth muscle
relaxation.
Length = 406
Score = 26.5 bits (59), Expect = 10.0
Identities = 10/15 (66%), Positives = 12/15 (80%), Gaps = 1/15 (6%)
Query: 71 IMRGPGSG-APARAF 84
IM GPG+G AP R+F
Sbjct: 250 IMVGPGTGIAPFRSF 264
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.330 0.142 0.466
Gapped
Lambda K H
0.267 0.0764 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 9,191,860
Number of extensions: 844903
Number of successful extensions: 981
Number of sequences better than 10.0: 1
Number of HSP's gapped: 981
Number of HSP's successfully gapped: 53
Length of query: 179
Length of database: 10,937,602
Length adjustment: 91
Effective length of query: 88
Effective length of database: 6,901,388
Effective search space: 607322144
Effective search space used: 607322144
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.8 bits)
S2: 56 (25.3 bits)