RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy15663
(179 letters)
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 31.2 bits (70), Expect = 0.19
Identities = 22/124 (17%), Positives = 36/124 (29%), Gaps = 51/124 (41%)
Query: 34 YMVGYGISLIICGLSSAVNMRGYAGQAYCF---LSPGPALIMRGPGSGAPARAFHPIVYI 90
Y++ IS + G+ + Y +PG +R GA
Sbjct: 230 YLLSIPISCPLIGVIQLAH---YV--VTAKLLGFTPG---ELRSYLKGA----------- 270
Query: 91 GTFIGVTC---LLTASLSYITCYAAIAMGEKMKHALVHTW-----LCMSVFCLVFALGLR 142
L+TA AIA + +W ++F +G+R
Sbjct: 271 -----TGHSQGLVTA--------VAIAETD--------SWESFFVSVRKAITVLFFIGVR 309
Query: 143 QTEA 146
EA
Sbjct: 310 CYEA 313
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna;
HET: CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 28.8 bits (63), Expect = 0.61
Identities = 8/42 (19%), Positives = 13/42 (30%), Gaps = 20/42 (47%)
Query: 47 LSSAVNMRGYAGQAYCFLSPGPALIMRGPGSGAPARAFHPIV 88
L +++ + YA S APA A +
Sbjct: 25 LQASLKL--YA-----------------DDS-APALAIKATM 46
>1tll_A Nitric-oxide synthase, brain; reductase module, FMN, FAD, NADP+,
oxidoreductase; HET: FMN FAD NAP; 2.30A {Rattus
norvegicus} SCOP: b.43.4.1 c.23.5.2 c.25.1.4
Length = 688
Score = 29.0 bits (65), Expect = 0.92
Identities = 12/38 (31%), Positives = 17/38 (44%), Gaps = 11/38 (28%)
Query: 58 GQAYCFLSPGPA----------LIMRGPGSG-APARAF 84
CF+ P+ I+ GPG+G AP R+F
Sbjct: 481 DVVPCFVRGAPSFHLPRNPQVPCILVGPGTGIAPFRSF 518
>1f20_A Nitric-oxide synthase; nitric-xoide synthase, reductase domain,
FAD, NADP+, oxidore; HET: FAD NAP; 1.90A {Rattus
norvegicus} SCOP: b.43.4.1 c.25.1.4
Length = 435
Score = 28.5 bits (64), Expect = 1.3
Identities = 12/38 (31%), Positives = 17/38 (44%), Gaps = 11/38 (28%)
Query: 58 GQAYCFLSPGPA----------LIMRGPGSG-APARAF 84
CF+ P+ I+ GPG+G AP R+F
Sbjct: 260 DVVPCFVRGAPSFHLPRNPQVPCILVGPGTGIAPFRSF 297
>2bpo_A CPR, P450R, NADPH-cytochrom P450 reductase; NADPH-cytochrome P450
reductase, diflavin reductase, FAD, FMN-binding,
electron transfer; HET: FAD FMN NAP; 2.9A {Saccharomyces
cerevisiae} PDB: 2bn4_A* 2bf4_A*
Length = 682
Score = 28.2 bits (63), Expect = 1.5
Identities = 10/16 (62%), Positives = 12/16 (75%), Gaps = 1/16 (6%)
Query: 70 LIMRGPGSG-APARAF 84
+IM GPG+G AP R F
Sbjct: 527 VIMIGPGTGVAPFRGF 542
>4dql_A Bifunctional P-450/NADPH-P450 reductase; rossmann fold, redox, FAD
and NADP+ binding, oxidoreductase; HET: FAD NAP 1PE PG4;
2.15A {Bacillus megaterium} PDB: 4dqk_A*
Length = 393
Score = 28.0 bits (63), Expect = 1.7
Identities = 11/16 (68%), Positives = 12/16 (75%), Gaps = 1/16 (6%)
Query: 70 LIMRGPGSG-APARAF 84
LIM GPG+G AP R F
Sbjct: 243 LIMVGPGTGVAPFRGF 258
>3qe2_A CPR, P450R, NADPH--cytochrome P450 reductase; cypor, antley-bixler
syndrome, flavoprotein, FMN, FAD, oxidoreductase; HET:
FAD FMN NAP; 1.75A {Homo sapiens} PDB: 3qfc_A* 3qfr_A*
1amo_A* 1j9z_A* 1ja0_A* 1ja1_A* 3es9_A* 3ojw_A* 3ojx_A*
3fjo_A* 1b1c_A*
Length = 618
Score = 28.1 bits (63), Expect = 1.7
Identities = 9/16 (56%), Positives = 11/16 (68%), Gaps = 1/16 (6%)
Query: 70 LIMRGPGSG-APARAF 84
+IM GPG+G AP F
Sbjct: 469 VIMVGPGTGVAPFIGF 484
>3oaa_A ATP synthase subunit alpha; rossmann fold, hydrolase,
hydrolase-transport PROT complex; HET: ANP ADP; 3.26A
{Escherichia coli DH1} PDB: 2a7u_A
Length = 513
Score = 28.0 bits (63), Expect = 1.9
Identities = 11/27 (40%), Positives = 16/27 (59%), Gaps = 4/27 (14%)
Query: 102 ASLSYITCYAAIAMGE----KMKHALV 124
A+L Y+ YA AMGE + + AL+
Sbjct: 232 AALQYLAPYAGCAMGEYFRDRGEDALI 258
>2qtl_A MSR;, methionine synthase reductase; alpha-beta-alpha structural
motif, flattened antiparallel BE barrel, flexible hinge
region, connecting domain; HET: FAD; 1.90A {Homo
sapiens} PDB: 2qtz_A*
Length = 539
Score = 28.2 bits (63), Expect = 1.9
Identities = 9/16 (56%), Positives = 11/16 (68%), Gaps = 1/16 (6%)
Query: 70 LIMRGPGSG-APARAF 84
+IM GPG+G AP F
Sbjct: 381 IIMVGPGTGIAPFIGF 396
>3qfs_A CPR, P450R, NADPH--cytochrome P450 reductase; flavoprotein, FAD,
oxidoreductase; HET: FAD NAP; 1.40A {Homo sapiens} PDB:
3qft_A*
Length = 458
Score = 28.0 bits (63), Expect = 1.9
Identities = 9/16 (56%), Positives = 11/16 (68%), Gaps = 1/16 (6%)
Query: 70 LIMRGPGSG-APARAF 84
+IM GPG+G AP F
Sbjct: 309 VIMVGPGTGVAPFIGF 324
>2qe7_A ATP synthase subunit alpha; blockage of ATP hydrolysis, F1-ATPase,
single analysis, thermoalkaliphilic, hydrolase; 3.06A
{Bacillus SP} PDB: 1sky_B
Length = 502
Score = 27.6 bits (62), Expect = 2.1
Identities = 15/27 (55%), Positives = 16/27 (59%), Gaps = 4/27 (14%)
Query: 102 ASLSYITCYAAIAMGE----KMKHALV 124
A L Y+ YA AMGE K KHALV
Sbjct: 232 APLLYLAPYAGCAMGEYFMYKGKHALV 258
>2r9v_A ATP synthase subunit alpha; TM1612, structural genomics, JOI for
structural genomics, JCSG, protein structure initiative
ATP synthesis; HET: ATP PG4; 2.10A {Thermotoga maritima
MSB8}
Length = 515
Score = 27.7 bits (62), Expect = 2.2
Identities = 14/27 (51%), Positives = 15/27 (55%), Gaps = 4/27 (14%)
Query: 102 ASLSYITCYAAIAMGE----KMKHALV 124
ASL YI YA AMGE + ALV
Sbjct: 245 ASLQYIAPYAGCAMGEYFAYSGRDALV 271
>2ck3_A ATP synthase subunit alpha\, mitochondrial; hydrolase; HET: ANP
ADP; 1.9A {Bos taurus} SCOP: a.69.1.1 b.49.1.1 c.37.1.11
PDB: 1bmf_A* 1e1q_A* 1e1r_A* 1e79_A* 1h8h_A* 1nbm_A*
1ohh_A* 1qo1_A 1w0j_A* 1w0k_A* 1h8e_A* 2jdi_A* 2wss_A*
2w6j_A 2w6e_A 2w6g_A 2w6f_A 2w6h_A 2w6i_A 1cow_A* ...
Length = 510
Score = 27.6 bits (62), Expect = 2.2
Identities = 11/27 (40%), Positives = 15/27 (55%), Gaps = 4/27 (14%)
Query: 102 ASLSYITCYAAIAMGE----KMKHALV 124
A L Y+ Y+ +MGE KHAL+
Sbjct: 240 APLQYLAPYSGCSMGEYFRDNGKHALI 266
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 27.9 bits (61), Expect = 2.3
Identities = 31/227 (13%), Positives = 56/227 (24%), Gaps = 94/227 (41%)
Query: 18 EL-PHEDIVVHKPILGIYMVGYGIS-LIICGLSSAVNMRGYAGQAY------CFLSPGPA 69
EL P +++++ G ++G G + + + S + + C SP
Sbjct: 146 ELRPAKNVLID----G--VLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCN-SPETV 198
Query: 70 LIM--------------RGPGSGAPARAFHPI----------------------VY---- 89
L M R S H I V
Sbjct: 199 LEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKA 258
Query: 90 IGTFIGVTC--LLTASLSYITCYAAIA---MGEKMKH-ALVHTWLCMSVFCLVFALGLRQ 143
F ++C LLT T + + H +L H ++ L
Sbjct: 259 WNAF-NLSCKILLT------TRFKQVTDFLSAATTTHISLDH-----------HSMTLTP 300
Query: 144 TEAERLC-QWIGVAL----HYFC-----LCSLFW-----MAVTVKYY 175
E + L +++ S+ T +
Sbjct: 301 DEVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDNW 347
>1fx0_A ATP synthase alpha chain; latent ATPase, thermal stability,
potential tentoxin binding hydrolase; 3.20A {Spinacia
oleracea} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB: 1kmh_A*
Length = 507
Score = 27.7 bits (62), Expect = 2.3
Identities = 8/27 (29%), Positives = 14/27 (51%), Gaps = 4/27 (14%)
Query: 102 ASLSYITCYAAIAMGE----KMKHALV 124
A+L Y+ Y A+ E + +H L+
Sbjct: 233 ATLQYLAPYTGAALAEYFMYRERHTLI 259
>2b5o_A FNR, ferredoxin--NADP reductase; complex with FAD, oxidoreductase;
HET: FAD; 2.50A {Synechococcus SP}
Length = 402
Score = 27.6 bits (61), Expect = 2.3
Identities = 8/16 (50%), Positives = 11/16 (68%), Gaps = 1/16 (6%)
Query: 70 LIMRGPGSG-APARAF 84
++M G+G AP RAF
Sbjct: 253 VVMLATGTGIAPFRAF 268
>1ddg_A Sulfite reductase (NADPH) flavoprotein alpha- component; cytochrome
P450 reductase, FNR, modular protein, oxidoreductase;
HET: FAD; 2.01A {Escherichia coli} SCOP: b.43.4.1
c.25.1.4 PDB: 1ddi_A*
Length = 374
Score = 27.5 bits (62), Expect = 2.4
Identities = 11/16 (68%), Positives = 13/16 (81%), Gaps = 1/16 (6%)
Query: 70 LIMRGPGSG-APARAF 84
+IM GPG+G AP RAF
Sbjct: 230 VIMIGPGTGIAPFRAF 245
>3lo8_A Ferredoxin--NADP reductase; electron transport, oxidoreductase,
FAD, flavoprotein; HET: FAD; 1.05A {Zea mays} PDB:
3lvb_A* 1jb9_A*
Length = 311
Score = 27.4 bits (61), Expect = 2.9
Identities = 7/16 (43%), Positives = 9/16 (56%), Gaps = 1/16 (6%)
Query: 70 LIMRGPGSG-APARAF 84
IM G+G AP R +
Sbjct: 163 HIMIATGTGVAPFRGY 178
>3jqq_A Ferredoxin NADP reductase; FAD, oxidoreductase; HET: FAD A2P; 2.20A
{Plasmodium falciparum} PDB: 2ok8_A* 2ok7_A* 3jqr_A*
3jqp_A*
Length = 316
Score = 27.1 bits (60), Expect = 3.0
Identities = 5/16 (31%), Positives = 8/16 (50%), Gaps = 1/16 (6%)
Query: 70 LIMRGPGSG-APARAF 84
I G+G +P +F
Sbjct: 173 FIFIATGTGISPYISF 188
>1fnb_A Ferredoxin-NADP+ reductase; oxidoreductase
(NADP+(A),ferredoxin(A)); HET: FAD; 1.70A {Spinacia
oleracea} SCOP: b.43.4.2 c.25.1.1 PDB: 1fnc_A* 1fnd_A*
1bx1_A* 1frq_A* 1frn_A* 1bx0_A* 1qg0_A* 1qga_A* 1qfz_A*
1qfy_A* 1gaw_A* 1gaq_A* 3mhp_A* 1sm4_A* 2xnc_A*
Length = 314
Score = 27.0 bits (60), Expect = 3.1
Identities = 9/16 (56%), Positives = 12/16 (75%), Gaps = 1/16 (6%)
Query: 70 LIMRGPGSG-APARAF 84
+IM G G+G AP R+F
Sbjct: 165 IIMLGTGTGIAPFRSF 180
>2bmw_A Ferredoxin--NADP reductase; oxidoreductase, flavoprotein, FAD, FNR,
reductase reductase, phycobilisome, thylakoid; HET: FAD;
1.5A {Anabaena SP} SCOP: b.43.4.2 c.25.1.1 PDB: 1h42_A*
2vyq_A* 2vzl_A* 1ogi_A* 1ogj_A* 1gjr_A* 1e62_A* 1e64_A*
1quf_A* 1e63_A* 1go2_A* 1w34_A* 1b2r_A* 1w35_A* 1w87_A*
1que_A* 1ewy_A* 1gr1_A* 2bsa_A* 1bqe_A* ...
Length = 304
Score = 27.0 bits (60), Expect = 3.7
Identities = 7/37 (18%), Positives = 11/37 (29%), Gaps = 11/37 (29%)
Query: 59 QAYCFLSPGPA----------LIMRGPGSG-APARAF 84
+ G +IM G+G P R +
Sbjct: 130 EVKITGPVGKEMLLPDDPEANVIMLAGGTGITPMRTY 166
>2rc5_A Ferredoxin-NADP reductase; FAD, oxidoreductase; HET: FAD; 2.43A
{Leptospira interrogans} PDB: 2rc6_A*
Length = 314
Score = 26.7 bits (59), Expect = 4.8
Identities = 4/16 (25%), Positives = 7/16 (43%), Gaps = 1/16 (6%)
Query: 70 LIMRGPGSG-APARAF 84
++ G+G AP
Sbjct: 168 IMFLATGTGIAPFIGM 183
>3nd0_A SLL0855 protein; CLC family CL-/H+ antiporter, CLC_EC1 homolog,
transport protein; 3.20A {Synechocystis} PDB: 3q17_A
Length = 466
Score = 26.6 bits (59), Expect = 5.0
Identities = 12/47 (25%), Positives = 18/47 (38%), Gaps = 6/47 (12%)
Query: 76 GSGAPARAFHPIVYIGTFIGVTC------LLTASLSYITCYAAIAMG 116
GSGA F P++ I + + V L + + A MG
Sbjct: 341 GSGAIGGIFAPMLGIASIVSVAMARHFHLLFPSQIPEPAVMAIAGMG 387
>3o0h_A Glutathione reductase; ssgcid, structur genomics, seattle
structural genomics center for infectious gluathione
reductase, oxidoreductase; HET: FAD; 1.90A {Bartonella
henselae}
Length = 484
Score = 25.9 bits (58), Expect = 8.1
Identities = 5/33 (15%), Positives = 14/33 (42%), Gaps = 3/33 (9%)
Query: 24 IVVHKP---ILGIYMVGYGISLIICGLSSAVNM 53
+VV ++G +++G I + ++
Sbjct: 413 LVVDGESRIVVGAHVLGENAGEIAQLIGISLKG 445
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.330 0.142 0.466
Gapped
Lambda K H
0.267 0.0765 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 2,814,247
Number of extensions: 160299
Number of successful extensions: 406
Number of sequences better than 10.0: 1
Number of HSP's gapped: 406
Number of HSP's successfully gapped: 40
Length of query: 179
Length of database: 6,701,793
Length adjustment: 87
Effective length of query: 92
Effective length of database: 4,272,666
Effective search space: 393085272
Effective search space used: 393085272
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.8 bits)
S2: 54 (24.5 bits)