RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy15663
         (179 letters)



>d1uewa_ b.36.1.1 (A:) Membrane associated guanylate kinase
          inverted-2 (MAGI-2, KIAA0705) {Human (Homo sapiens)
          [TaxId: 9606]}
          Length = 114

 Score = 26.5 bits (58), Expect = 1.1
 Identities = 12/33 (36%), Positives = 17/33 (51%), Gaps = 4/33 (12%)

Query: 11 GSSSSSDELPHEDIVVHKPILGIYMVGYGISLI 43
          GSS SS  L   D+V+H+        G+G  +I
Sbjct: 1  GSSGSSGSLQTSDVVIHRKENE----GFGFVII 29


>d1ujda_ b.36.1.1 (A:) Hypothetical protein KIAA0559 {Human (Homo
          sapiens) [TaxId: 9606]}
          Length = 117

 Score = 25.3 bits (55), Expect = 2.6
 Identities = 16/59 (27%), Positives = 22/59 (37%), Gaps = 2/59 (3%)

Query: 11 GSSSSS--DELPHEDIVVHKPILGIYMVGYGISLIICGLSSAVNMRGYAGQAYCFLSPG 67
          GSS SS     PH  I + +      + G G+ + I G        G  G     + PG
Sbjct: 1  GSSGSSGHYIFPHARIKITRDSKDHTVSGNGLGIRIVGGKEIPGHSGEIGAYIAKILPG 59


>d1ytda1 c.1.17.1 (A:120-389) Nicotinate phosphoribosyltransferase
           Ta1145 {Thermoplasma acidophilum [TaxId: 2303]}
          Length = 270

 Score = 24.9 bits (54), Expect = 5.8
 Identities = 14/52 (26%), Positives = 18/52 (34%), Gaps = 14/52 (26%)

Query: 81  ARAFHPIV--------YIGTFIGVTCLLTASLSYITCYAAIAMGEKMKHALV 124
            R  HP +        YIG   GV+ +L A L        +       HAL 
Sbjct: 21  IRRMHPAISPMIDRSAYIGGADGVSGILGAKLIDQDPVGTMP------HALS 66


>d1pjra1 c.37.1.19 (A:1-318) DEXX box DNA helicase {Bacillus
           stearothermophilus, PcrA [TaxId: 1422]}
          Length = 318

 Score = 25.0 bits (53), Expect = 7.1
 Identities = 20/77 (25%), Positives = 32/77 (41%), Gaps = 2/77 (2%)

Query: 67  GPALIMRGPGSGAPARAFHPIVYIGTFIGVTCLLTASLSYITCYAAIAMGEKMKHALVHT 126
           GP LIM G GSG      H I Y+     V      ++++ T  AA  M E++  +L+  
Sbjct: 25  GPLLIMAGAGSGKTRVLTHRIAYLMAEKHVAPWNILAITF-TNKAAREMRERV-QSLLGG 82

Query: 127 WLCMSVFCLVFALGLRQ 143
                      ++ +R 
Sbjct: 83  AAEDVWISTFHSMCVRI 99


>d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia
           coli [TaxId: 562]}
          Length = 447

 Score = 24.6 bits (52), Expect = 9.7
 Identities = 19/140 (13%), Positives = 35/140 (25%), Gaps = 1/140 (0%)

Query: 30  ILGIYMVGYGISLIICGLSSAVNMRGYAGQAYCFLSPGPALIMRGPGSGAPARAFHPIVY 89
            L    + YG S  I G  S  +       A   L+    L M        + A   ++ 
Sbjct: 64  ALSGISIAYGFSKFIMGSVSDRSNPRVFLPAGLILAAAVMLFMGFVPWATSSIAVMFVLL 123

Query: 90  IGTFIGVTCLLTASLSYIT-CYAAIAMGEKMKHALVHTWLCMSVFCLVFALGLRQTEAER 148
                            +   ++    G  +        +   +  L+F LG+       
Sbjct: 124 FLCGWFQGMGWPPCGRTMVHWWSQKERGGIVSVWNCAHNVGGGIPPLLFLLGMAWFNDWH 183

Query: 149 LCQWIGVALHYFCLCSLFWM 168
              ++            F M
Sbjct: 184 AALYMPAFCAILVALFAFAM 203


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.330    0.142    0.466 

Gapped
Lambda     K      H
   0.267   0.0572    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 693,767
Number of extensions: 29662
Number of successful extensions: 61
Number of sequences better than 10.0: 1
Number of HSP's gapped: 61
Number of HSP's successfully gapped: 7
Length of query: 179
Length of database: 2,407,596
Length adjustment: 80
Effective length of query: 99
Effective length of database: 1,309,196
Effective search space: 129610404
Effective search space used: 129610404
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.8 bits)
S2: 50 (23.4 bits)