BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy15664
(174 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3LQ3|A Chain A, Crystal Structure Of Human Choline Kinase Beta In Complex
With Phosphorylated Hemicholinium-3 And Adenosine
Nucleotide
Length = 401
Score = 124 bits (312), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 69/173 (39%), Positives = 90/173 (52%), Gaps = 28/173 (16%)
Query: 9 LNTEADWLKKHLLKIKSPVTFCHNDLQEGNILYRESPXXXXXXXXXXXXXXXXXXXXXXX 68
L E L+K L SPV FCHND+QEGNIL P
Sbjct: 224 LKDEMGNLRKLLESTPSPVVFCHNDIQEGNILLLSEPENAD------------------- 264
Query: 69 IDLVVIDFEYCSYNYRAFDIANHFVESVYDYSYKHFPHYTVKRENYPSYSLRKSFVETYL 128
L+++DFEY SYNYR FDI NHF E VYDY+++ +P Y + +YP+ + F+ YL
Sbjct: 265 -SLMLVDFEYSSYNYRGFDIGNHFCEWVYDYTHEEWPFYKARPTDYPTQEQQLHFIRHYL 323
Query: 129 SR------MNQEDSTP--ESVLEEVKHFTLASHFFWALWSFVHDDTSEISFGY 173
+ ++QE+ E +L EV + LASHFFW LWS + S I FGY
Sbjct: 324 AEAKKGETLSQEEQRKLEEDLLVEVSRYALASHFFWGLWSILQASMSTIEFGY 376
>pdb|3FEG|A Chain A, Crystal Structure Of Human Choline Kinase Beta In Complex
With Phosphorylated Hemicholinium-3 And Adenosine
Nucleotide
Length = 379
Score = 124 bits (312), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 69/173 (39%), Positives = 90/173 (52%), Gaps = 28/173 (16%)
Query: 9 LNTEADWLKKHLLKIKSPVTFCHNDLQEGNILYRESPXXXXXXXXXXXXXXXXXXXXXXX 68
L E L+K L SPV FCHND+QEGNIL P
Sbjct: 202 LKDEMGNLRKLLESTPSPVVFCHNDIQEGNILLLSEPENAD------------------- 242
Query: 69 IDLVVIDFEYCSYNYRAFDIANHFVESVYDYSYKHFPHYTVKRENYPSYSLRKSFVETYL 128
L+++DFEY SYNYR FDI NHF E VYDY+++ +P Y + +YP+ + F+ YL
Sbjct: 243 -SLMLVDFEYSSYNYRGFDIGNHFCEWVYDYTHEEWPFYKARPTDYPTQEQQLHFIRHYL 301
Query: 129 SR------MNQEDSTP--ESVLEEVKHFTLASHFFWALWSFVHDDTSEISFGY 173
+ ++QE+ E +L EV + LASHFFW LWS + S I FGY
Sbjct: 302 AEAKKGETLSQEEQRKLEEDLLVEVSRYALASHFFWGLWSILQASMSTIEFGY 354
>pdb|2I7Q|A Chain A, Crystal Structure Of Human Choline Kinase A
Length = 402
Score = 124 bits (312), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 72/180 (40%), Positives = 91/180 (50%), Gaps = 27/180 (15%)
Query: 3 KILSKDLNTEADWLKKHLLKIKSPVTFCHNDLQEGNILYRESPXXXXXXXXXXXXXXXXX 62
K+LS +L E + L+ L SPV FCHND QEGNIL E
Sbjct: 221 KLLSYNLPLELENLRSLLESTPSPVVFCHNDCQEGNILLLEG------------------ 262
Query: 63 XXXXXXIDLVVIDFEYCSYNYRAFDIANHFVESVYDYSYKHFPHYTVKRENYPSYSLRKS 122
L++IDFEY SYNYR FDI NHF E +YDYSY+ +P + YP+ +
Sbjct: 263 RENSEKQKLMLIDFEYSSYNYRGFDIGNHFCEWMYDYSYEKYPFFRANIRKYPTKKQQLH 322
Query: 123 FVETYLS-------RMNQEDST--PESVLEEVKHFTLASHFFWALWSFVHDDTSEISFGY 173
F+ +YL ++ E+ + E +L EV F LASHF W LWS V S I FGY
Sbjct: 323 FISSYLPAFQNDFENLSTEEKSIIKEEMLLEVNRFALASHFLWGLWSIVQAKISSIEFGY 382
>pdb|3F2R|A Chain A, Crystal Structure Of Human Choline Kinase Alpha In Complex
With Hemicholinium-3
pdb|3F2R|B Chain B, Crystal Structure Of Human Choline Kinase Alpha In Complex
With Hemicholinium-3
pdb|3G15|A Chain A, Crystal Structure Of Human Choline Kinase Alpha In Complex
With Hemicholinium-3 And Adp
pdb|3G15|B Chain B, Crystal Structure Of Human Choline Kinase Alpha In Complex
With Hemicholinium-3 And Adp
Length = 401
Score = 124 bits (312), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 72/180 (40%), Positives = 91/180 (50%), Gaps = 27/180 (15%)
Query: 3 KILSKDLNTEADWLKKHLLKIKSPVTFCHNDLQEGNILYRESPXXXXXXXXXXXXXXXXX 62
K+LS +L E + L+ L SPV FCHND QEGNIL E
Sbjct: 220 KLLSYNLPLELENLRSLLESTPSPVVFCHNDCQEGNILLLEG------------------ 261
Query: 63 XXXXXXIDLVVIDFEYCSYNYRAFDIANHFVESVYDYSYKHFPHYTVKRENYPSYSLRKS 122
L++IDFEY SYNYR FDI NHF E +YDYSY+ +P + YP+ +
Sbjct: 262 RENSEKQKLMLIDFEYSSYNYRGFDIGNHFCEWMYDYSYEKYPFFRANIRKYPTKKQQLH 321
Query: 123 FVETYLS-------RMNQEDST--PESVLEEVKHFTLASHFFWALWSFVHDDTSEISFGY 173
F+ +YL ++ E+ + E +L EV F LASHF W LWS V S I FGY
Sbjct: 322 FISSYLPAFQNDFENLSTEEKSIIKEEMLLEVNRFALASHFLWGLWSIVQAKISSIEFGY 381
>pdb|3ZM9|A Chain A, The Mechanism Of Allosteric Coupling In Choline Kinase A1
Revealed By A Rationally Designed Inhibitor
pdb|3ZM9|B Chain B, The Mechanism Of Allosteric Coupling In Choline Kinase A1
Revealed By A Rationally Designed Inhibitor
Length = 383
Score = 124 bits (311), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 72/180 (40%), Positives = 91/180 (50%), Gaps = 27/180 (15%)
Query: 3 KILSKDLNTEADWLKKHLLKIKSPVTFCHNDLQEGNILYRESPXXXXXXXXXXXXXXXXX 62
K+LS +L E + L+ L SPV FCHND QEGNIL E
Sbjct: 202 KLLSYNLPLELENLRSLLESTPSPVVFCHNDCQEGNILLLEGRENSEKQ----------- 250
Query: 63 XXXXXXIDLVVIDFEYCSYNYRAFDIANHFVESVYDYSYKHFPHYTVKRENYPSYSLRKS 122
L++IDFEY SYNYR FDI NHF E +YDYSY+ +P + YP+ +
Sbjct: 251 -------KLMLIDFEYSSYNYRGFDIGNHFCEWMYDYSYEKYPFFRANIRKYPTKKQQLH 303
Query: 123 FVETYL-------SRMNQEDST--PESVLEEVKHFTLASHFFWALWSFVHDDTSEISFGY 173
F+ +YL ++ E+ + E +L EV F LASHF W LWS V S I FGY
Sbjct: 304 FISSYLPAFQNDFENLSTEEKSIIKEEMLLEVNRFALASHFLWGLWSIVQAKISSIEFGY 363
>pdb|2CKO|A Chain A, Crystal Structure Of Human Choline Kinase Alpha 2
pdb|2CKO|B Chain B, Crystal Structure Of Human Choline Kinase Alpha 2
pdb|2CKP|A Chain A, Crystal Structure Of Human Choline Kinase Alpha-2 In
Complex With Adp
pdb|2CKP|B Chain B, Crystal Structure Of Human Choline Kinase Alpha-2 In
Complex With Adp
pdb|2CKQ|A Chain A, Crystal Structure Of Human Choline Kinase Alpha 2 In
Complex With Phosphocholine
pdb|2CKQ|B Chain B, Crystal Structure Of Human Choline Kinase Alpha 2 In
Complex With Phosphocholine
Length = 390
Score = 124 bits (311), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 72/182 (39%), Positives = 92/182 (50%), Gaps = 27/182 (14%)
Query: 1 MKKILSKDLNTEADWLKKHLLKIKSPVTFCHNDLQEGNILYRESPXXXXXXXXXXXXXXX 60
+ K+LS +L E + L+ L SPV FCHND QEGNIL E
Sbjct: 207 LHKLLSYNLPLELENLRSLLESTPSPVVFCHNDCQEGNILLLEGRENSEKQ--------- 257
Query: 61 XXXXXXXXIDLVVIDFEYCSYNYRAFDIANHFVESVYDYSYKHFPHYTVKRENYPSYSLR 120
L++IDFEY SYNYR FDI NHF E +YDYSY+ +P + YP+ +
Sbjct: 258 ---------KLMLIDFEYSSYNYRGFDIGNHFCEWMYDYSYEKYPFFRANIRKYPTKKQQ 308
Query: 121 KSFVETYL-------SRMNQEDST--PESVLEEVKHFTLASHFFWALWSFVHDDTSEISF 171
F+ +YL ++ E+ + E +L EV F LASHF W LWS V S I F
Sbjct: 309 LHFISSYLPAFQNDFENLSTEEKSIIKEEMLLEVNRFALASHFLWGLWSIVQAKISSIEF 368
Query: 172 GY 173
GY
Sbjct: 369 GY 370
>pdb|2IG7|A Chain A, Crystal Structure Of Human Choline Kinase B
pdb|2IG7|B Chain B, Crystal Structure Of Human Choline Kinase B
Length = 401
Score = 124 bits (310), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 69/173 (39%), Positives = 89/173 (51%), Gaps = 28/173 (16%)
Query: 9 LNTEADWLKKHLLKIKSPVTFCHNDLQEGNILYRESPXXXXXXXXXXXXXXXXXXXXXXX 68
L E L+K L SPV FCHND+QEGNIL P
Sbjct: 224 LKDEXGNLRKLLESTPSPVVFCHNDIQEGNILLLSEPENAD------------------- 264
Query: 69 IDLVVIDFEYCSYNYRAFDIANHFVESVYDYSYKHFPHYTVKRENYPSYSLRKSFVETYL 128
L ++DFEY SYNYR FDI NHF E VYDY+++ +P Y + +YP+ + F+ YL
Sbjct: 265 -SLXLVDFEYSSYNYRGFDIGNHFCEWVYDYTHEEWPFYKARPTDYPTQEQQLHFIRHYL 323
Query: 129 SR------MNQEDSTP--ESVLEEVKHFTLASHFFWALWSFVHDDTSEISFGY 173
+ ++QE+ E +L EV + LASHFFW LWS + S I FGY
Sbjct: 324 AEAKKGETLSQEEQRKLEEDLLVEVSRYALASHFFWGLWSILQASXSTIEFGY 376
>pdb|1NW1|A Chain A, Crystal Structure Of Choline Kinase
pdb|1NW1|B Chain B, Crystal Structure Of Choline Kinase
Length = 429
Score = 118 bits (295), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 66/175 (37%), Positives = 87/175 (49%), Gaps = 9/175 (5%)
Query: 8 DLNTEADWLKKHLLKIKSPVTFCHNDLQEGNILYRESPXXXXXXXXXXXXXXXXXXXXXX 67
DL E ++L+ H+ KSPVTFCHNDLQEGNIL ++
Sbjct: 230 DLARELEFLRAHISLSKSPVTFCHNDLQEGNILLPKASSGNIRMPSLSDETQALGNSLSA 289
Query: 68 ----XIDLVVIDFEYCSYNYRAFDIANHFVESVYDYSYKHFPHYTVKRENYPSYSLRKSF 123
LV+IDFEY SYNYRAFD ANHF+E DY P Y ++ EN+P F
Sbjct: 290 FNPADPRLVLIDFEYASYNYRAFDFANHFIEWTIDYDIDEAPFYKIQTENFPENDQMLEF 349
Query: 124 VETYL-----SRMNQEDSTPESVLEEVKHFTLASHFFWALWSFVHDDTSEISFGY 173
YL +R N+ E +++E F SHFFW +W + + S + FG+
Sbjct: 350 FLNYLREQGNTRENELYKKSEDLVQETLPFVPVSHFFWGVWGLLQVELSPVGFGF 404
>pdb|3FI8|A Chain A, Crystal Structure Of Choline Kinase From Plasmodium
Falciparum, Pf14_0020
Length = 362
Score = 88.6 bits (218), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 53/148 (35%), Positives = 71/148 (47%), Gaps = 33/148 (22%)
Query: 23 IKSPVTFCHNDLQEGNILYRESPXXXXXXXXXXXXXXXXXXXXXXXIDLVVIDFEYCSYN 82
I + + FCHNDLQE NI+ L +IDFEY YN
Sbjct: 200 IANDIVFCHNDLQENNIMNTNKC-------------------------LRLIDFEYSGYN 234
Query: 83 YRAFDIANHFVESVYDYSYKHFPHYTVKRENYPSYSLRKSFVETYLSRMNQEDSTPES-- 140
+ + DIAN F+E+ DYSY +P + + ++NY SY R FV TYLS+ +DST S
Sbjct: 235 FLSADIANFFIETTIDYSYNAYPFFIINKKNYISYESRILFVTTYLSKY-LDDSTAASDQ 293
Query: 141 -----VLEEVKHFTLASHFFWALWSFVH 163
LE ++ L H WA WS +
Sbjct: 294 DIIDQFLEAIEVQALGLHLIWAFWSIIR 321
>pdb|3MES|A Chain A, Crystal Structure Of Choline Kinase From Cryptosporidium
Parvum Iowa Ii, Cgd3_2030
pdb|3MES|B Chain B, Crystal Structure Of Choline Kinase From Cryptosporidium
Parvum Iowa Ii, Cgd3_2030
Length = 424
Score = 86.7 bits (213), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 52/151 (34%), Positives = 74/151 (49%), Gaps = 33/151 (21%)
Query: 21 LKIKSP---VTFCHNDLQEGNILYRESPXXXXXXXXXXXXXXXXXXXXXXXIDLVVIDFE 77
LK+ SP + F HNDLQE N+L ++ ++ +ID+E
Sbjct: 253 LKLYSPAFSLVFAHNDLQENNLLQTQN-------------------------NIRMIDYE 287
Query: 78 YCSYNYRAFDIANHFVESVYDYSYKHFPHYTVKRENYPSYSLRKSFVETYLSRMNQEDST 137
Y + N+ DIAN+F E +YDY + P++ K E+YP LRK F+ YLS+ QE
Sbjct: 288 YSAINFAGADIANYFCEYIYDYCSEKQPYFKFKYEDYPCEELRKLFISVYLSQTLQEQVM 347
Query: 138 PESVL-----EEVKHFTLASHFFWALWSFVH 163
P + + V+ FTL SH W LWS
Sbjct: 348 PSQQIVHIMTKAVEVFTLISHITWGLWSIAR 378
>pdb|3C5I|A Chain A, Crystal Structure Of Plasmodium Knowlesi Choline Kinase,
Pkh_134520
pdb|3C5I|B Chain B, Crystal Structure Of Plasmodium Knowlesi Choline Kinase,
Pkh_134520
pdb|3C5I|C Chain C, Crystal Structure Of Plasmodium Knowlesi Choline Kinase,
Pkh_134520
pdb|3C5I|D Chain D, Crystal Structure Of Plasmodium Knowlesi Choline Kinase,
Pkh_134520
Length = 369
Score = 80.5 bits (197), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 46/147 (31%), Positives = 69/147 (46%), Gaps = 31/147 (21%)
Query: 23 IKSPVTFCHNDLQEGNILYRESPXXXXXXXXXXXXXXXXXXXXXXXIDLVVIDFEYCSYN 82
+ + + FCHNDLQE NI+ L +IDFEY +N
Sbjct: 208 LANTIVFCHNDLQENNIINTNKC-------------------------LRLIDFEYSGFN 242
Query: 83 YRAFDIANHFVESVYDYSYKHFPHYTVKRENYPSYSLRKSFVETYLSR-MNQEDSTP--- 138
+ A DIAN F+E+ DYS +P + + ++ Y SY RK F+ YLS +++ P
Sbjct: 243 FLATDIANFFIETSIDYSVSSYPFFEIDKKKYISYENRKLFITAYLSNYLDKSLVVPTPK 302
Query: 139 --ESVLEEVKHFTLASHFFWALWSFVH 163
+ +LE V+ L +H W WS +
Sbjct: 303 LIDEILEAVEVQALGAHLLWGFWSIIR 329
>pdb|2QG7|A Chain A, Plasmodium Vivax Ethanolamine Kinase Pv091845
pdb|2QG7|B Chain B, Plasmodium Vivax Ethanolamine Kinase Pv091845
pdb|2QG7|D Chain D, Plasmodium Vivax Ethanolamine Kinase Pv091845
pdb|2QG7|E Chain E, Plasmodium Vivax Ethanolamine Kinase Pv091845
Length = 458
Score = 45.8 bits (107), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 31/100 (31%), Positives = 45/100 (45%), Gaps = 11/100 (11%)
Query: 74 IDFEYCSYNYRAFDIANHFVESVYDYSYKHFPHYTVKRENYPSYSLRKSFVETYLSRMNQ 133
IDFEY RA+DIANHF E + + + PS F+ YL ++
Sbjct: 350 IDFEYSCPMERAYDIANHFNE---------YAGFNCDWDLTPSKEEEYHFIMHYLGTDDE 400
Query: 134 EDSTPESVLEEVKHFTLASHFFWALWSFVHDDTSEISFGY 173
E ++ E++ F + SH W LWS + S I F +
Sbjct: 401 E--LINQLIREIQPFYICSHINWGLWSLLQGMHSSIDFDF 438
>pdb|1N3U|A Chain A, Crystal Structure Of Human Heme Oxygenase 1 (Ho-1) In
Complex With Its Substrate Heme, Crystal Form B
pdb|1N3U|B Chain B, Crystal Structure Of Human Heme Oxygenase 1 (Ho-1) In
Complex With Its Substrate Heme, Crystal Form B
pdb|1N45|A Chain A, X-Ray Crystal Structure Of Human Heme Oxygenase-1 (Ho-1)
In Complex With Its Substrate Heme
pdb|1N45|B Chain B, X-Ray Crystal Structure Of Human Heme Oxygenase-1 (Ho-1)
In Complex With Its Substrate Heme
pdb|1OZR|A Chain A, Crystal Structures Of The Ferric, Ferrous And Ferrous-No
Forms Of The Asp140ala Mutant Of Human Heme Oxygenase-1:
Catalytic Implications
pdb|1OZR|B Chain B, Crystal Structures Of The Ferric, Ferrous And Ferrous-No
Forms Of The Asp140ala Mutant Of Human Heme Oxygenase-1:
Catalytic Implications
pdb|1OZW|A Chain A, Crystal Structures Of The Ferric, Ferrous And Ferrous-No
Forms Of The Asp140ala Mutant Of Human Heme Oxygenase-1:
Catalytic Implications
pdb|1OZW|B Chain B, Crystal Structures Of The Ferric, Ferrous And Ferrous-No
Forms Of The Asp140ala Mutant Of Human Heme Oxygenase-1:
Catalytic Implications
pdb|1S8C|A Chain A, Crystal Structure Of Human Heme Oxygenase In A Complex
With Biliverdine
pdb|1S8C|B Chain B, Crystal Structure Of Human Heme Oxygenase In A Complex
With Biliverdine
pdb|1S8C|C Chain C, Crystal Structure Of Human Heme Oxygenase In A Complex
With Biliverdine
pdb|1S8C|D Chain D, Crystal Structure Of Human Heme Oxygenase In A Complex
With Biliverdine
pdb|1S13|A Chain A, Human Heme Oxygenase Oxidatition Of Alpha- And Gamma-Meso-
Phenylhemes
pdb|1S13|B Chain B, Human Heme Oxygenase Oxidatition Of Alpha- And Gamma-Meso-
Phenylhemes
pdb|1T5P|A Chain A, Human Heme Oxygenase Oxidation Of Alpha- And Gamma-Meso-
Phenylhemes
pdb|1T5P|B Chain B, Human Heme Oxygenase Oxidation Of Alpha- And Gamma-Meso-
Phenylhemes
pdb|1TWN|A Chain A, Crystal Structures Of Ferrous And Ferrous-No Forms Of
Verdoheme In A Complex With Human Heme Oxygenase-1:
Catalytic Implications For Heme Cleavage
pdb|1TWN|B Chain B, Crystal Structures Of Ferrous And Ferrous-No Forms Of
Verdoheme In A Complex With Human Heme Oxygenase-1:
Catalytic Implications For Heme Cleavage
pdb|1TWR|A Chain A, Crystal Structures Of Ferrous And Ferrous-No Forms Of
Verdoheme In A Complex With Human Heme Oxygenase-1:
Catalytic Implications For Heme Cleavage
pdb|1TWR|B Chain B, Crystal Structures Of Ferrous And Ferrous-No Forms Of
Verdoheme In A Complex With Human Heme Oxygenase-1:
Catalytic Implications For Heme Cleavage
pdb|3CZY|A Chain A, Crystal Structure Of Human Heme Oxygenase-1 In Complex
With 1-(Adamantan-1-Yl)-2-(1h-Imidazol-1-Yl)ethanone
pdb|3CZY|B Chain B, Crystal Structure Of Human Heme Oxygenase-1 In Complex
With 1-(Adamantan-1-Yl)-2-(1h-Imidazol-1-Yl)ethanone
pdb|3HOK|A Chain A, X-Ray Crystal Structure Of Human Heme Oxygenase-1 With
(2r,
4s)-2-[2-(4-Chlorophenyl)ethyl]-2-[(1h-Imidazol-1-Yl)
Methyl]-4[((5-Trifluoromethylpyridin-2-Yl)thio)methyl]-
1,3- Dioxolane: A Novel, Inducible Binding Mode
pdb|3HOK|B Chain B, X-Ray Crystal Structure Of Human Heme Oxygenase-1 With
(2r,
4s)-2-[2-(4-Chlorophenyl)ethyl]-2-[(1h-Imidazol-1-Yl)
Methyl]-4[((5-Trifluoromethylpyridin-2-Yl)thio)methyl]-
1,3- Dioxolane: A Novel, Inducible Binding Mode
pdb|3K4F|A Chain A, X-Ray Crystal Structure Of Human Heme Oxygenase-1 In
Complex With
4-Phenyl-1-(1h-1,2,4-Triazol-1-Yl)-2-Butanone
pdb|3K4F|B Chain B, X-Ray Crystal Structure Of Human Heme Oxygenase-1 In
Complex With
4-Phenyl-1-(1h-1,2,4-Triazol-1-Yl)-2-Butanone
pdb|3TGM|A Chain A, X-Ray Crystal Structure Of Human Heme Oxygenase-1 In
Complex With 1- (1h-Imidazol-1-Yl)-4,4-Diphenyl-2
Butanone
pdb|3TGM|B Chain B, X-Ray Crystal Structure Of Human Heme Oxygenase-1 In
Complex With 1- (1h-Imidazol-1-Yl)-4,4-Diphenyl-2
Butanone
Length = 233
Score = 28.5 bits (62), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 20/62 (32%), Positives = 29/62 (46%), Gaps = 4/62 (6%)
Query: 113 NYPSYSLRKSFVETYLSRMNQEDSTP---ESVLEEVK-HFTLASHFFWALWSFVHDDTSE 168
+P+ + F + Y SRMN + TP + V+EE K F L F L + DT +
Sbjct: 168 TFPNIASATKFKQLYRSRMNSLEMTPAVRQRVIEEAKTAFLLNIQLFEELQELLTHDTKD 227
Query: 169 IS 170
S
Sbjct: 228 QS 229
>pdb|1XJZ|A Chain A, Crystal Structures Of The G139a, G139a-No And G143h
Mutants Of Human Heme Oxygenase-1
pdb|1XJZ|B Chain B, Crystal Structures Of The G139a, G139a-No And G143h
Mutants Of Human Heme Oxygenase-1
Length = 233
Score = 28.5 bits (62), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 20/62 (32%), Positives = 29/62 (46%), Gaps = 4/62 (6%)
Query: 113 NYPSYSLRKSFVETYLSRMNQEDSTP---ESVLEEVK-HFTLASHFFWALWSFVHDDTSE 168
+P+ + F + Y SRMN + TP + V+EE K F L F L + DT +
Sbjct: 168 TFPNIASATKFKQLYRSRMNSLEMTPAVRQRVIEEAKTAFLLNIQLFEELQELLTHDTKD 227
Query: 169 IS 170
S
Sbjct: 228 QS 229
>pdb|1OYK|A Chain A, Crystal Structures Of The Ferric, Ferrous, And Ferrous-No
Forms Of The Asp140ala Mutant Of Human Heme Oxygenase-1:
Catalytic Implications
pdb|1OYK|B Chain B, Crystal Structures Of The Ferric, Ferrous, And Ferrous-No
Forms Of The Asp140ala Mutant Of Human Heme Oxygenase-1:
Catalytic Implications
pdb|1OYL|A Chain A, Crystal Structures Of The Ferric, Ferrous, And Ferrous-No
Forms Of The Asp140ala Mutant Of Human Heme Oxygenase-1:
Catalytic Implications
pdb|1OYL|B Chain B, Crystal Structures Of The Ferric, Ferrous, And Ferrous-No
Forms Of The Asp140ala Mutant Of Human Heme Oxygenase-1:
Catalytic Implications
pdb|1OZE|A Chain A, Crystal Structures Of The Ferric, Ferrous, And Ferrous-No
Forms Of The Asp140ala Mutant Of Human Heme Oxygenase-
1:catalytic Implications
pdb|1OZE|B Chain B, Crystal Structures Of The Ferric, Ferrous, And Ferrous-No
Forms Of The Asp140ala Mutant Of Human Heme Oxygenase-
1:catalytic Implications
pdb|1OZL|A Chain A, Crystal Structures Of The Ferric, Ferrous, And Ferrous-No
Forms Of The Asp140ala Mutant Of Human Heme Oxygenase-1:
Catalytic Implications
pdb|1OZL|B Chain B, Crystal Structures Of The Ferric, Ferrous, And Ferrous-No
Forms Of The Asp140ala Mutant Of Human Heme Oxygenase-1:
Catalytic Implications
Length = 233
Score = 28.5 bits (62), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 20/62 (32%), Positives = 29/62 (46%), Gaps = 4/62 (6%)
Query: 113 NYPSYSLRKSFVETYLSRMNQEDSTP---ESVLEEVK-HFTLASHFFWALWSFVHDDTSE 168
+P+ + F + Y SRMN + TP + V+EE K F L F L + DT +
Sbjct: 168 TFPNIASATKFKQLYRSRMNSLEMTPAVRQRVIEEAKTAFLLNIQLFEELQELLTHDTKD 227
Query: 169 IS 170
S
Sbjct: 228 QS 229
>pdb|1XK2|A Chain A, Nadph- And Ascorbate-Supported Heme Oxygenase Reactions
Are Distinct. Regiospecificity Of Heme Cleavage By The
R183e Mutant
pdb|1XK2|B Chain B, Nadph- And Ascorbate-Supported Heme Oxygenase Reactions
Are Distinct. Regiospecificity Of Heme Cleavage By The
R183e Mutant
pdb|1XK3|A Chain A, Nadph- And Ascorbate-Supported Heme Oxygenase Reactions
Are Distinct. Regiospecificity Of Heme Cleavage By The
R183e Mutant
pdb|1XK3|B Chain B, Nadph- And Ascorbate-Supported Heme Oxygenase Reactions
Are Distinct. Regiospecificity Of Heme Cleavage By The
R183e Mutant
Length = 233
Score = 27.7 bits (60), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 20/62 (32%), Positives = 29/62 (46%), Gaps = 4/62 (6%)
Query: 113 NYPSYSLRKSFVETYLSRMNQEDSTP---ESVLEEVK-HFTLASHFFWALWSFVHDDTSE 168
+P+ + F + Y SRMN + TP + V+EE K F L F L + DT +
Sbjct: 168 TFPNIASATKFKQLYESRMNSLEMTPAVRQRVIEEAKTAFLLNIQLFEELQELLTHDTKD 227
Query: 169 IS 170
S
Sbjct: 228 QS 229
>pdb|1XK1|A Chain A, Crystal Structures Of The G139a, G139a-No And G143h
Mutants Of Human Heme Oxygenase-1
pdb|1XK1|B Chain B, Crystal Structures Of The G139a, G139a-No And G143h
Mutants Of Human Heme Oxygenase-1
Length = 233
Score = 27.7 bits (60), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 20/62 (32%), Positives = 29/62 (46%), Gaps = 4/62 (6%)
Query: 113 NYPSYSLRKSFVETYLSRMNQEDSTP---ESVLEEVK-HFTLASHFFWALWSFVHDDTSE 168
+P+ + F + Y SRMN + TP + V+EE K F L F L + DT +
Sbjct: 168 TFPNIASATKFKQLYESRMNSLEMTPAVRQRVIEEAKTAFLLNIQLFEELQELLTHDTKD 227
Query: 169 IS 170
S
Sbjct: 228 QS 229
>pdb|1XK0|A Chain A, Crystal Structures Of The G139a, G139a-No And G143h
Mutants Of Human Heme Oxygenase-1
pdb|1XK0|B Chain B, Crystal Structures Of The G139a, G139a-No And G143h
Mutants Of Human Heme Oxygenase-1
Length = 233
Score = 27.7 bits (60), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 20/62 (32%), Positives = 29/62 (46%), Gaps = 4/62 (6%)
Query: 113 NYPSYSLRKSFVETYLSRMNQEDSTP---ESVLEEVK-HFTLASHFFWALWSFVHDDTSE 168
+P+ + F + Y SRMN + TP + V+EE K F L F L + DT +
Sbjct: 168 TFPNIASATKFKQLYESRMNSLEMTPAVRQRVIEEAKTAFLLNIQLFEELQELLTHDTKD 227
Query: 169 IS 170
S
Sbjct: 228 QS 229
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.321 0.135 0.427
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,831,813
Number of Sequences: 62578
Number of extensions: 162415
Number of successful extensions: 413
Number of sequences better than 100.0: 21
Number of HSP's better than 100.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 375
Number of HSP's gapped (non-prelim): 25
length of query: 174
length of database: 14,973,337
effective HSP length: 92
effective length of query: 82
effective length of database: 9,216,161
effective search space: 755725202
effective search space used: 755725202
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 48 (23.1 bits)