RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy15664
(174 letters)
>gnl|CDD|240177 cd05156, ChoK_euk, Choline Kinase (ChoK) in eukaryotes. The ChoK
subfamily is part of a larger superfamily that includes
the catalytic domains of other kinases, such as the
typical serine/threonine/tyrosine protein kinases (PKs),
RIO kinases, actin-fragmin kinase (AFK), and
phosphoinositide 3-kinase (PI3K). It is composed of
bacterial and eukaryotic choline kinases, as well as
eukaryotic ethanolamine kinase. ChoK catalyzes the
transfer of the gamma-phosphoryl group from ATP (or CTP)
to its substrate, choline, producing phosphorylcholine
(PCho), a precursor to the biosynthesis of two major
membrane phospholipids, phosphatidylcholine (PC) and
sphingomyelin (SM). Although choline is the preferred
substrate, ChoK also shows substantial activity towards
ethanolamine and its N-methylated derivatives. ChoK
plays an important role in cell signaling pathways and
the regulation of cell growth. Along with PCho, it is
involved in malignant transformation through Ras
oncogenes in various human cancers such as breast, lung,
colon, prostate, neuroblastoma, and hepatic lymphoma. In
mammalian cells, there are three ChoK isoforms (A-1,
A-2, and B) which are active in homo or heterodimeric
forms.
Length = 302
Score = 153 bits (388), Expect = 2e-46
Identities = 63/170 (37%), Positives = 83/170 (48%), Gaps = 28/170 (16%)
Query: 1 MKKILSKDLNTEADWL-KKHLLKIKSPVTFCHNDLQEGNILYRESPNNNNNNNNNNNNNN 59
+ +D +L + + SPV FCHNDLQEGNIL +
Sbjct: 152 ELSLFLEDEAKYLRFLLESTSEESGSPVVFCHNDLQEGNILLLNPSSETK---------- 201
Query: 60 VNNSSNNNNIDLVVIDFEYCSYNYRAFDIANHFVESVYDYSYKHFPHYTVKRENYPSYSL 119
LV+IDFEY SYNYR FDIANHF E +YDY P + + + YP+
Sbjct: 202 ----------KLVLIDFEYASYNYRGFDIANHFCEWMYDYHDPEPPFFKIHEDKYPTEEQ 251
Query: 120 RKSFVETYLSRMNQEDSTPE-------SVLEEVKHFTLASHFFWALWSFV 162
R +F+ YLS + ++ E +LEEV+ FT ASH FWALW +
Sbjct: 252 RLNFISAYLSESLKGKNSVEEREKEVKDLLEEVEIFTPASHLFWALWGII 301
>gnl|CDD|177880 PLN02236, PLN02236, choline kinase.
Length = 344
Score = 112 bits (281), Expect = 3e-30
Identities = 62/178 (34%), Positives = 84/178 (47%), Gaps = 33/178 (18%)
Query: 1 MKKILSKDLNTEADWLKKHLLKIKSPVTFCHNDLQEGNILYRESPNNNNNNNNNNNNNNV 60
K+ L E + L+K L + FCHNDLQ GNI+ E
Sbjct: 174 AKEFRLDSLEDEINLLEKELSGDDQEIGFCHNDLQYGNIMIDEETRA------------- 220
Query: 61 NNSSNNNNIDLVVIDFEYCSYNYRAFDIANHFVESVYDYSYKHFPH---YTVKRENYPSY 117
+ +ID+EY SYN A+DIANHF E DY + PH Y+ YP
Sbjct: 221 ----------ITIIDYEYASYNPVAYDIANHFCEMAADY-HSETPHILDYS----KYPGE 265
Query: 118 SLRKSFVETYLSRMNQE--DSTPESVLEEVKHFTLASHFFWALWSFVHDDTSEISFGY 173
R+ F+ TYLS +E D E +L++V+ +TLASH FW LW + ++I F Y
Sbjct: 266 EERRRFIRTYLSSSGEEPSDEEVEQLLDDVEKYTLASHLFWGLWGIISGHVNKIDFDY 323
>gnl|CDD|216617 pfam01633, Choline_kinase, Choline/ethanolamine kinase. Choline
kinase catalyzes the committed step in the synthesis of
phosphatidylcholine by the CDP-choline pathway. This
alignment covers the protein kinase portion of the
protein. The divergence of this family makes it very
difficult to create a model that specifically predicts
choline/ethanolamine kinases only. However if [add Pfam
ID here for Choline_kinase_C] is also present then it is
definitely a member of this family.
Length = 206
Score = 98.5 bits (246), Expect = 3e-26
Identities = 47/117 (40%), Positives = 59/117 (50%), Gaps = 25/117 (21%)
Query: 1 MKKILSKDLNTEADWLKKHLLKIKSPVTFCHNDLQEGNILYRESPNNNNNNNNNNNNNNV 60
+K I +DL E + L+K L ++SP+ FCHNDLQ GNIL
Sbjct: 113 LKLIDLEDLEKEINELEKLLENLESPIVFCHNDLQPGNILL------------------- 153
Query: 61 NNSSNNNNIDLVVIDFEYCSYNYRAFDIANHFVESVYDYSYKHFPHYTVKRENYPSY 117
+N+ LV+IDFEY SYNYRAFDIANHF E DY + YP+
Sbjct: 154 ----DNSTNRLVLIDFEYASYNYRAFDIANHFCEWAGDYHEPEP--FKCDYSLYPTE 204
>gnl|CDD|240350 PTZ00296, PTZ00296, choline kinase; Provisional.
Length = 442
Score = 99.6 bits (248), Expect = 4e-25
Identities = 51/163 (31%), Positives = 74/163 (45%), Gaps = 37/163 (22%)
Query: 12 EADWLKKHLLK------IKSPVTFCHNDLQEGNILYRESPNNNNNNNNNNNNNNVNNSSN 65
E++ K + + + + FCHNDLQE NI+
Sbjct: 263 ESEKFIKFMKVYSKSDNLANDIVFCHNDLQENNII------------------------- 297
Query: 66 NNNIDLVVIDFEYCSYNYRAFDIANHFVESVYDYSYKHFPHYTVKRENYPSYSLRKSFVE 125
N N L +IDFEY YN+ A DIAN F+E+ DYS H+P + + ++ Y SY RK F+
Sbjct: 298 NTNKCLRLIDFEYSGYNFLATDIANFFIETTIDYSVSHYPFFAIDKKKYISYENRKLFIT 357
Query: 126 TYLSRMNQEDSTPES------VLEEVKHFTLASHFFWALWSFV 162
YLS + + +LE V+ L +H W WS +
Sbjct: 358 AYLSNYLDKSLVVPNPKIIDQILEAVEVQALGAHLLWGFWSII 400
>gnl|CDD|215231 PLN02421, PLN02421, phosphotransferase, alcohol group as
acceptor/kinase.
Length = 330
Score = 87.9 bits (218), Expect = 3e-21
Identities = 56/176 (31%), Positives = 77/176 (43%), Gaps = 37/176 (21%)
Query: 2 KKILSKDLNTEADWLKKHLLKIKSPVTFCHNDLQEGNILYRESPNNNNNNNNNNNNNNVN 61
+ I ++L E LK+ +K+PV F HNDL GN++
Sbjct: 157 ETISFEELRDEIVELKEITDSLKAPVVFAHNDLLSGNLML-------------------- 196
Query: 62 NSSNNNNIDLVVIDFEYCSYNYRAFDIANHFVESV-YDYSYKHFPHYTVKRENYPSYSLR 120
N + L IDFEY SY+YR +DI NHF E +D Y +P K E Y
Sbjct: 197 ---NEDEGKLYFIDFEYGSYSYRGYDIGNHFNEYAGFDCDYSLYPS---KEEQY------ 244
Query: 121 KSFVETYLSRMNQEDSTP---ESVLEEVKHFTLASHFFWALWSFVHDDTSEISFGY 173
F YL + E+ + E + E + LASH +WA+W+ V S I F Y
Sbjct: 245 -HFFRHYLRPDDPEEVSDAELEELFVETNFYALASHLYWAIWAIVQAKMSPIDFDY 299
>gnl|CDD|240178 cd05157, ETNK_euk, Ethanolamine kinase (ETNK) in eukaryotes. ETNK
is part of a larger superfamily that includes the
catalytic domains of other kinases, such as the typical
serine/threonine/tyrosine protein kinases (PKs), RIO
kinases, actin-fragmin kinase (AFK), and
phosphoinositide 3-kinase (PI3K). ETNK catalyzes the
transfer of the gamma-phosphoryl group from CTP to
ethanolamine (Etn), the first step in the CDP-Etn
pathway for the formation of the major phospholipid,
phosphatidylethanolamine (PtdEtn). Unlike ChoK, ETNK
shows specific activity for its substrate, and displays
negligible activity towards N-methylated derivatives of
Etn. The Drosophila ETNK is implicated in development
and neuronal function. Mammals contain two ETNK
proteins, ETNK1 and ETNK2. ETNK1 selectively increases
Etn uptake and phosphorylation, as well as PtdEtn
synthesis. ETNK2 is found primarily in the liver and
reproductive tissues. It plays a critical role in
regulating placental hemostasis to support late
embryonic development. It may also have a role in
testicular maturation.
Length = 235
Score = 82.0 bits (203), Expect = 1e-19
Identities = 40/93 (43%), Positives = 47/93 (50%), Gaps = 23/93 (24%)
Query: 2 KKILSKDLNTEADWLKKHLLKIKSPVTFCHNDLQEGNILYRESPNNNNNNNNNNNNNNVN 61
K I + L E WLK+ L + SP+ FCHNDL GNI+Y N N+V
Sbjct: 145 KAISFEQLRDEISWLKELLSALNSPIVFCHNDLLSGNIIY------------NEEKNSVK 192
Query: 62 NSSNNNNIDLVVIDFEYCSYNYRAFDIANHFVE 94
ID+EY YNYRAFDIANHF E
Sbjct: 193 -----------FIDYEYAGYNYRAFDIANHFNE 214
>gnl|CDD|240172 cd05151, ChoK, Choline Kinase (ChoK). The ChoK subfamily is part of
a larger superfamily that includes the catalytic domains
of other kinases, such as the typical
serine/threonine/tyrosine protein kinases (PKs), RIO
kinases, actin-fragmin kinase (AFK), and
phosphoinositide 3-kinase (PI3K). It is composed of
bacterial and eukaryotic choline kinases, as well as
eukaryotic ethanolamine kinase. ChoK catalyzes the
transfer of the gamma-phosphoryl group from ATP (or CTP)
to its substrate, choline, producing phosphorylcholine
(PCho), a precursor to the biosynthesis of two major
membrane phospholipids, phosphatidylcholine (PC), and
sphingomyelin (SM). Although choline is the preferred
substrate, ChoK also shows substantial activity towards
ethanolamine and its N-methylated derivatives. Bacterial
ChoK is also referred to as licA protein. ETNK catalyzes
the transfer of the gamma-phosphoryl group from CTP to
ethanolamine (Etn), the first step in the CDP-Etn
pathway for the formation of the major phospholipid,
phosphatidylethanolamine (PtdEtn). Unlike ChoK, ETNK
shows specific activity for its substrate and displays
negligible activity towards N-methylated derivatives of
Etn. ChoK plays an important role in cell signaling
pathways and the regulation of cell growth.
Length = 170
Score = 55.3 bits (134), Expect = 4e-10
Identities = 24/87 (27%), Positives = 32/87 (36%), Gaps = 27/87 (31%)
Query: 16 LKK-HLLKIKSPVTFCHNDLQEGNILYRESPNNNNNNNNNNNNNNVNNSSNNNNIDLVVI 74
LKK H + + CHNDL GN L ++ + L I
Sbjct: 96 LKKLHSSPLP-DLVPCHNDLLPGNFLL-----------------------DDGRLWL--I 129
Query: 75 DFEYCSYNYRAFDIANHFVESVYDYSY 101
D+EY N FD+AN F E+
Sbjct: 130 DWEYAGMNDPLFDLANFFSEAKLSEDQ 156
>gnl|CDD|173576 PTZ00384, PTZ00384, choline kinase; Provisional.
Length = 383
Score = 54.0 bits (130), Expect = 5e-09
Identities = 46/169 (27%), Positives = 70/169 (41%), Gaps = 38/169 (22%)
Query: 2 KKILSKDLNTEADWLKKHLLKIKSPVTFCHNDLQEGNILYRESPNNNNNNNNNNNNNNVN 61
KKIL+ LNT I + V FCHNDL NIL
Sbjct: 210 KKILNNHLNTSN--------SITNSVLFCHNDLFFTNIL--------------------- 240
Query: 62 NSSNNNNIDLVVIDFEYCSYNYRAFDIANHFVESVYDYSYKHFPHYTVKRENYPSYSLRK 121
+ N + IDF++ +NY ++IAN FV+ Y P++ S ++
Sbjct: 241 ----DFNQGIYFIDFDFAGFNYVGWEIANFFVKLYIVYDPPTPPYFNSDDSLALSEEMKT 296
Query: 122 SFVETYLSRMNQEDSTP-----ESVLEEVKHFTLASHFFWALWSFVHDD 165
FV YLS++ ++ P + L+ ++ TL + FW W V +D
Sbjct: 297 IFVSVYLSQLLGKNVLPSDDLVKEFLQSLEIHTLGVNLFWTYWGIVMND 345
>gnl|CDD|240159 cd05120, APH_ChoK_like, Aminoglycoside 3'-phosphotransferase (APH)
and Choline Kinase (ChoK) family. The APH/ChoK family is
part of a larger superfamily that includes the catalytic
domains of other kinases, such as the typical
serine/threonine/tyrosine protein kinases (PKs), RIO
kinases, actin-fragmin kinase (AFK), and
phosphoinositide 3-kinase (PI3K). The family is composed
of APH, ChoK, ethanolamine kinase (ETNK), macrolide
2'-phosphotransferase (MPH2'), an unusual homoserine
kinase, and uncharacterized proteins with similarity to
the N-terminal domain of acyl-CoA dehydrogenase 10
(ACAD10). The members of this family catalyze the
transfer of the gamma-phosphoryl group from ATP (or CTP)
to small molecule substrates such as aminoglycosides,
macrolides, choline, ethanolamine, and homoserine.
Phosphorylation of the antibiotics, aminoglycosides and
macrolides, leads to their inactivation and to bacterial
antibiotic resistance. Phosphorylation of choline,
ethanolamine, and homoserine serves as precursors to the
synthesis of important biological compounds, such as the
major phospholipids, phosphatidylcholine and
phosphatidylethanolamine and the amino acids, threonine,
methionine, and isoleucine.
Length = 155
Score = 47.0 bits (112), Expect = 4e-07
Identities = 21/74 (28%), Positives = 28/74 (37%), Gaps = 25/74 (33%)
Query: 19 HLLKIKSPVTFCHNDLQEGNILYRESPNNNNNNNNNNNNNNVNNSSNNNNIDLVVIDFEY 78
L ++ V CH DL GNIL ++ I L +ID+EY
Sbjct: 101 KLHQLPLLV-LCHGDLHPGNILV-----------------------DDGKI-LGIIDWEY 135
Query: 79 CSYNYRAFDIANHF 92
Y AFD+A
Sbjct: 136 AGYGPPAFDLAAAL 149
>gnl|CDD|223584 COG0510, ycfN, Thiamine kinase and related kinases [Coenzyme
transport and metabolism].
Length = 269
Score = 45.5 bits (108), Expect = 3e-06
Identities = 22/94 (23%), Positives = 36/94 (38%), Gaps = 25/94 (26%)
Query: 7 KDLNTEADWLKKHLLKIKSPV-TFCHNDLQEGNILYRESPNNNNNNNNNNNNNNVNNSSN 65
L + L++ L ++ CHNDL GN+L +
Sbjct: 132 HLLRKKLKELRRALEEVPKDDLVPCHNDLNPGNLLL--TDKG------------------ 171
Query: 66 NNNIDLVVIDFEYCSYNYRAFDIANHFVESVYDY 99
L +ID+EY N AFD+A E ++++
Sbjct: 172 ----GLFLIDWEYAGLNDPAFDLAALLSEYIFNH 201
>gnl|CDD|216618 pfam01636, APH, Phosphotransferase enzyme family. This family
consists of bacterial antibiotic resistance proteins,
which confer resistance to various aminoglycosides they
include: aminoglycoside 3'-phosphotransferase or
kanamycin kinase / neomycin-kanamycin phosphotransferase
and streptomycin 3''-kinase or streptomycin
3''-phosphotransferase. The aminoglycoside
phosphotransferases inactivate aminoglycoside
antibiotics via phosphorylation. This family also
includes homoserine kinase. This family is related to
fructosamine kinase pfam03881.
Length = 238
Score = 42.6 bits (100), Expect = 3e-05
Identities = 17/81 (20%), Positives = 22/81 (27%), Gaps = 25/81 (30%)
Query: 12 EADWLKKHLLKIKSPVTFCHNDLQEGNILYRESPNNNNNNNNNNNNNNVNNSSNNNNIDL 71
L L P+ H DL GN+L
Sbjct: 152 LLAALLALLPA--LPLVLVHGDLHPGNLLVDP-----------------------GGRVT 186
Query: 72 VVIDFEYCSYNYRAFDIANHF 92
VIDFE A+D+A+
Sbjct: 187 GVIDFEDAGLGDPAYDLASLL 207
>gnl|CDD|225213 COG2334, COG2334, Putative homoserine kinase type II (protein
kinase fold) [General function prediction only].
Length = 331
Score = 36.5 bits (85), Expect = 0.003
Identities = 19/132 (14%), Positives = 33/132 (25%), Gaps = 45/132 (34%)
Query: 30 CHNDLQEGNILYRESPNNNNNNNNNNNNNNVNNSSNNNNIDLVVIDFEYCSYNYRAFDIA 89
H DL N+L+ + + IDF+ Y + +D+A
Sbjct: 200 IHGDLHPDNVLFDDDTDV-----------------------SGFIDFDDAGYGWFIYDLA 236
Query: 90 NHFVESVYDYSYKHFPHYTVKRENYPSYSLRKSFVETYLSRMNQEDSTP--ESVLEEVKH 147
+ +F+E Y E+ P + LE +
Sbjct: 237 I-----ALNAWNGDEADPRA---------AIAAFLEGY------EEVRPLTAAELELLPD 276
Query: 148 FTLASHFFWALW 159
W
Sbjct: 277 LRRLRALRLWAW 288
>gnl|CDD|131952 TIGR02906, spore_CotS, spore coat protein, CotS family. Members of
this family include the spore coat proteins CotS and
YtaA from Bacillus subtilis and, from other
endospore-forming bacteria, homologs that are more
closely related to these two than to the spore coat
proteins YutH and YsxE. The CotS family is more broadly
distributed than YutH or YsxE, but still is not
universal among spore-formers [Cellular processes,
Sporulation and germination].
Length = 313
Score = 36.5 bits (85), Expect = 0.004
Identities = 23/89 (25%), Positives = 31/89 (34%), Gaps = 28/89 (31%)
Query: 2 KKILSKDLNTEADWLKKHLLKIKSPVTFCHNDLQEGNILYRESPNNNNNNNNNNNNNNVN 61
KK L ++ L K KI+ FCH D NIL +N V
Sbjct: 165 KKALELLNKSKYYDLCKEAKKIRG---FCHQDYAYHNILL--------------KDNEVY 207
Query: 62 NSSNNNNIDLVVIDFEYCSYNYRAFDIAN 90
VIDF+YC+ + D+
Sbjct: 208 -----------VIDFDYCTIDLPVRDLRK 225
>gnl|CDD|240427 PTZ00470, PTZ00470, glycoside hydrolase family 47 protein;
Provisional.
Length = 522
Score = 35.9 bits (83), Expect = 0.007
Identities = 17/41 (41%), Positives = 25/41 (60%)
Query: 31 HNDLQEGNILYRESPNNNNNNNNNNNNNNVNNSSNNNNIDL 71
+ +L+E ++ + +N NNNNNNNN N NN +NN N
Sbjct: 1 NVNLREHLSVHNNADDNYNNNNNNNNQINSNNPNNNGNNQA 41
Score = 30.8 bits (70), Expect = 0.35
Identities = 16/32 (50%), Positives = 19/32 (59%)
Query: 46 NNNNNNNNNNNNNNVNNSSNNNNIDLVVIDFE 77
NNNNNNNN N+NN NN+ NN L +
Sbjct: 19 NNNNNNNNQINSNNPNNNGNNQASKLPRGKKK 50
Score = 28.9 bits (65), Expect = 1.6
Identities = 12/38 (31%), Positives = 17/38 (44%)
Query: 31 HNDLQEGNILYRESPNNNNNNNNNNNNNNVNNSSNNNN 68
H + + NNNNN N+NN NN N+ +
Sbjct: 7 HLSVHNNADDNYNNNNNNNNQINSNNPNNNGNNQASKL 44
>gnl|CDD|168775 PRK07034, PRK07034, hypothetical protein; Provisional.
Length = 536
Score = 34.8 bits (79), Expect = 0.017
Identities = 17/33 (51%), Positives = 21/33 (63%), Gaps = 6/33 (18%)
Query: 40 LYRESPN------NNNNNNNNNNNNNVNNSSNN 66
LY++ PN N NNNN N +NNN N S+NN
Sbjct: 82 LYQQQPNANDSYPNGNNNNPNGDNNNPNGSNNN 114
>gnl|CDD|205936 pfam13763, DUF4167, Domain of unknown function (DUF4167).
Length = 80
Score = 31.9 bits (73), Expect = 0.035
Identities = 11/25 (44%), Positives = 14/25 (56%)
Query: 46 NNNNNNNNNNNNNNVNNSSNNNNID 70
NNNN NNN + N N ++N D
Sbjct: 4 NNNNRNNNRSGGNPRNRVFDSNGPD 28
Score = 27.3 bits (61), Expect = 1.4
Identities = 9/23 (39%), Positives = 13/23 (56%)
Query: 42 RESPNNNNNNNNNNNNNNVNNSS 64
R + N NNN + N N V +S+
Sbjct: 3 RNNNNRNNNRSGGNPRNRVFDSN 25
Score = 26.9 bits (60), Expect = 1.8
Identities = 9/22 (40%), Positives = 10/22 (45%)
Query: 47 NNNNNNNNNNNNNVNNSSNNNN 68
NNNN NNN + N N
Sbjct: 1 RGRNNNNRNNNRSGGNPRNRVF 22
>gnl|CDD|237555 PRK13914, PRK13914, invasion associated secreted endopeptidase;
Provisional.
Length = 481
Score = 31.7 bits (71), Expect = 0.17
Identities = 12/23 (52%), Positives = 15/23 (65%)
Query: 46 NNNNNNNNNNNNNNVNNSSNNNN 68
N N+N N N+N N N S+NNN
Sbjct: 339 TNTNSNTNTNSNTNANQGSSNNN 361
Score = 29.8 bits (66), Expect = 0.67
Identities = 11/31 (35%), Positives = 16/31 (51%), Gaps = 6/31 (19%)
Query: 44 SPNNNNNN------NNNNNNNNVNNSSNNNN 68
+ N NN N N N N N+ N+++N N
Sbjct: 322 NTNTNNTNTSTPSKNTNTNTNSNTNTNSNTN 352
Score = 28.6 bits (63), Expect = 1.9
Identities = 11/35 (31%), Positives = 15/35 (42%), Gaps = 7/35 (20%)
Query: 41 YRESPNNNNNNN-------NNNNNNNVNNSSNNNN 68
+ N N NN N N N N N ++N+N
Sbjct: 317 TNTNTNTNTNNTNTSTPSKNTNTNTNSNTNTNSNT 351
Score = 27.1 bits (59), Expect = 5.2
Identities = 12/25 (48%), Positives = 16/25 (64%)
Query: 44 SPNNNNNNNNNNNNNNVNNSSNNNN 68
+ N N+N N N+N N SSNNN+
Sbjct: 338 NTNTNSNTNTNSNTNANQGSSNNNS 362
Score = 26.7 bits (58), Expect = 8.7
Identities = 9/25 (36%), Positives = 12/25 (48%)
Query: 44 SPNNNNNNNNNNNNNNVNNSSNNNN 68
N N N N NN N + + + N N
Sbjct: 316 KTNTNTNTNTNNTNTSTPSKNTNTN 340
>gnl|CDD|240175 cd05154, ACAD10_11_like, Acyl-CoA dehydrogenase (ACAD) 10 and 11,
N-terminal domain, and similar proteins. This subfamily
is part of a larger superfamily that includes the
catalytic domains of other kinases, such as the typical
serine/threonine/tyrosine protein kinases (PKs), RIO
kinases, actin-fragmin kinase (AFK), and
phosphoinositide 3-kinase (PI3K). This subfamily is
composed of bacterial and eukaryotic proteins with
similarity to the N-terminal domains of vertebrate
ACAD10 and ACAD11. ACADs are a family of flavoproteins
that are involved in the beta-oxidation of fatty
acyl-CoA derivatives. ACAD deficiency can cause
metabolic disorders including muscle fatigue,
hypoglycemia, and hepatic lipidosis, among them. There
are at least 11 distinct ACADs, some of which show
distinct substrate specificities to either
straight-chain or branched-chain fatty acids. ACAD10 is
widely expressed in human tissues and is highly
expressed in liver, kidney, pancreas, and spleen. ACAD10
and ACAD11 contain a long N-terminal domain with
similarity to phosphotransferases with a PK fold, which
is absent in other ACADs. They may exhibit multiple
functions in acyl-CoA oxidation pathways.
Length = 223
Score = 31.0 bits (71), Expect = 0.19
Identities = 10/33 (30%), Positives = 14/33 (42%), Gaps = 1/33 (3%)
Query: 13 ADWLKKHLLKIKSPVTFCHNDLQEGNILYRESP 45
WL+ HL S H D + GN+L+
Sbjct: 161 LRWLEAHLPA-DSRPGLVHGDYRLGNVLFHPDE 192
>gnl|CDD|219500 pfam07655, Secretin_N_2, Secretin N-terminal domain. This is a
short domain found in bacterial type II/III secretory
system proteins. The architecture of these proteins
suggest that this family may be functionally analogous
to pfam03958.
Length = 95
Score = 30.0 bits (68), Expect = 0.19
Identities = 6/25 (24%), Positives = 21/25 (84%)
Query: 44 SPNNNNNNNNNNNNNNVNNSSNNNN 68
S + +N++++++N++N +SS++++
Sbjct: 27 SSSGSNSSSSSSNSSNGGSSSSSSS 51
Score = 30.0 bits (68), Expect = 0.20
Identities = 5/23 (21%), Positives = 19/23 (82%)
Query: 46 NNNNNNNNNNNNNNVNNSSNNNN 68
+N++++++N++N ++SS++ +
Sbjct: 31 SNSSSSSSNSSNGGSSSSSSSGD 53
Score = 29.6 bits (67), Expect = 0.26
Identities = 5/25 (20%), Positives = 19/25 (76%)
Query: 44 SPNNNNNNNNNNNNNNVNNSSNNNN 68
N++++++N++N + ++SS+ ++
Sbjct: 30 GSNSSSSSSNSSNGGSSSSSSSGDS 54
Score = 28.8 bits (65), Expect = 0.51
Identities = 3/25 (12%), Positives = 20/25 (80%)
Query: 44 SPNNNNNNNNNNNNNNVNNSSNNNN 68
+ +++++N++N +++ ++S ++++
Sbjct: 32 NSSSSSSNSSNGGSSSSSSSGDSSS 56
Score = 28.8 bits (65), Expect = 0.57
Identities = 5/26 (19%), Positives = 20/26 (76%)
Query: 44 SPNNNNNNNNNNNNNNVNNSSNNNNI 69
S +++ +N++++++N+ N S++++
Sbjct: 25 SVSSSGSNSSSSSSNSSNGGSSSSSS 50
Score = 28.4 bits (64), Expect = 0.63
Identities = 4/24 (16%), Positives = 17/24 (70%)
Query: 44 SPNNNNNNNNNNNNNNVNNSSNNN 67
S +++N++N +++++ + S++
Sbjct: 34 SSSSSNSSNGGSSSSSSSGDSSSG 57
Score = 28.4 bits (64), Expect = 0.63
Identities = 6/26 (23%), Positives = 18/26 (69%)
Query: 44 SPNNNNNNNNNNNNNNVNNSSNNNNI 69
S ++N++N ++++++ +SS+ I
Sbjct: 35 SSSSNSSNGGSSSSSSSGDSSSGTRI 60
Score = 27.7 bits (62), Expect = 1.5
Identities = 3/25 (12%), Positives = 18/25 (72%)
Query: 44 SPNNNNNNNNNNNNNNVNNSSNNNN 68
S ++++N++N ++++ ++ +++
Sbjct: 33 SSSSSSNSSNGGSSSSSSSGDSSSG 57
Score = 27.7 bits (62), Expect = 1.5
Identities = 5/25 (20%), Positives = 20/25 (80%)
Query: 44 SPNNNNNNNNNNNNNNVNNSSNNNN 68
S ++++++N++N ++ ++SS +++
Sbjct: 31 SNSSSSSSNSSNGGSSSSSSSGDSS 55
>gnl|CDD|240339 PTZ00265, PTZ00265, multidrug resistance protein (mdr1);
Provisional.
Length = 1466
Score = 30.8 bits (69), Expect = 0.35
Identities = 14/24 (58%), Positives = 18/24 (75%)
Query: 46 NNNNNNNNNNNNNNVNNSSNNNNI 69
N NNN NN ++NN NN++NNN I
Sbjct: 674 NKENNNKNNKDDNNNNNNNNNNKI 697
Score = 30.0 bits (67), Expect = 0.82
Identities = 14/26 (53%), Positives = 18/26 (69%)
Query: 43 ESPNNNNNNNNNNNNNNVNNSSNNNN 68
E P +N NNN NN + NN++NNNN
Sbjct: 668 EDPTKDNKENNNKNNKDDNNNNNNNN 693
Score = 29.2 bits (65), Expect = 1.2
Identities = 13/25 (52%), Positives = 19/25 (76%)
Query: 44 SPNNNNNNNNNNNNNNVNNSSNNNN 68
+ +N NNN NN ++N NN++NNNN
Sbjct: 671 TKDNKENNNKNNKDDNNNNNNNNNN 695
Score = 28.8 bits (64), Expect = 1.9
Identities = 15/25 (60%), Positives = 19/25 (76%)
Query: 42 RESPNNNNNNNNNNNNNNVNNSSNN 66
+E+ N NN ++NNNNNNN NN NN
Sbjct: 675 KENNNKNNKDDNNNNNNNNNNKINN 699
Score = 28.1 bits (62), Expect = 3.4
Identities = 13/31 (41%), Positives = 21/31 (67%)
Query: 38 NILYRESPNNNNNNNNNNNNNNVNNSSNNNN 68
+I+ + +N NNN NN ++ NN++NNNN
Sbjct: 664 DIIGEDPTKDNKENNNKNNKDDNNNNNNNNN 694
Score = 27.7 bits (61), Expect = 3.7
Identities = 15/30 (50%), Positives = 21/30 (70%)
Query: 46 NNNNNNNNNNNNNNVNNSSNNNNIDLVVID 75
NNN NN ++NNNNN NN++ NN +I+
Sbjct: 677 NNNKNNKDDNNNNNNNNNNKINNAGSYIIE 706
>gnl|CDD|214961 smart00992, YccV-like, Hemimethylated DNA-binding protein YccV
like. YccV is a hemimethylated DNA binding protein
which has been shown to regulate dnaA gene expression.
The structure of one of the hypothetical proteins in
this family has been solved and it forms a beta sheet
structure with a terminating alpha helix.
Length = 98
Score = 29.1 bits (66), Expect = 0.43
Identities = 21/85 (24%), Positives = 30/85 (35%), Gaps = 19/85 (22%)
Query: 81 YNYRA--FDIANHFV--ESVYD------YSYKHFPHYTVKRENYPSYSLRKSFVETYLSR 130
+ YR FD F E YD + P Y V EN S Y+S
Sbjct: 15 FGYRGVVFDWDPEFANTEEWYDEIPEDSRPPRDQPFYHVLVENDDSS------YVAYVS- 67
Query: 131 MNQEDSTPESVLEEVKHFTLASHFF 155
+++ P++ E + H L F
Sbjct: 68 --EQNLEPDTSGEPIDHPLLDELFD 90
>gnl|CDD|215570 PLN03091, PLN03091, hypothetical protein; Provisional.
Length = 459
Score = 29.9 bits (67), Expect = 0.65
Identities = 17/58 (29%), Positives = 29/58 (50%), Gaps = 2/58 (3%)
Query: 44 SPNNNNNNNNNNNNNNVNNSSNNNN--IDLVVIDFEYCSYNYRAFDIANHFVESVYDY 99
S NN+NNNN++N+N+ + N + +D E + + R D+ HF +Y
Sbjct: 193 SSKINNSNNNNHSNSNLMTPTPNKDFFLDRFTTSHESSTTSCRPSDLVGHFPFQQLNY 250
>gnl|CDD|220296 pfam09580, Spore_YhcN_YlaJ, Sporulation lipoprotein YhcN/YlaJ
(Spore_YhcN_YlaJ). This entry contains YhcN and YlaJ,
which are predicted lipoproteins that have been
detected as spore proteins but not vegetative proteins
in Bacillus subtilis. Both appear to be expressed under
control of the RNA polymerase sigma-G factor. The
YlaJ-like members of this family have a low-complexity,
strongly acidic, 40-residue C-terminal domain.
Length = 169
Score = 29.2 bits (66), Expect = 0.72
Identities = 10/38 (26%), Positives = 12/38 (31%)
Query: 31 HNDLQEGNILYRESPNNNNNNNNNNNNNNVNNSSNNNN 68
N + NN NNNN NN + N
Sbjct: 21 QNVTDNDGNTNNVNNRNNRNNNNGYGRLTKNNVTGENG 58
Score = 27.7 bits (62), Expect = 2.8
Identities = 9/37 (24%), Positives = 13/37 (35%)
Query: 32 NDLQEGNILYRESPNNNNNNNNNNNNNNVNNSSNNNN 68
N + NN NN NNNN + ++
Sbjct: 20 RQNVTDNDGNTNNVNNRNNRNNNNGYGRLTKNNVTGE 56
Score = 26.5 bits (59), Expect = 6.2
Identities = 14/39 (35%), Positives = 18/39 (46%)
Query: 32 NDLQEGNILYRESPNNNNNNNNNNNNNNVNNSSNNNNID 70
+D N+ + NN NN NN NNNN NN+
Sbjct: 16 DDDNRQNVTDNDGNTNNVNNRNNRNNNNGYGRLTKNNVT 54
Score = 26.1 bits (58), Expect = 7.2
Identities = 14/44 (31%), Positives = 17/44 (38%)
Query: 32 NDLQEGNILYRESPNNNNNNNNNNNNNNVNNSSNNNNIDLVVID 75
ND N+ R + NNNN NN + NN V D
Sbjct: 26 NDGNTNNVNNRNNRNNNNGYGRLTKNNVTGENGYNNIERGEVAD 69
>gnl|CDD|225798 COG3259, FrhA, Coenzyme F420-reducing hydrogenase, alpha subunit
[Energy production and conversion].
Length = 441
Score = 28.9 bits (65), Expect = 1.3
Identities = 14/51 (27%), Positives = 18/51 (35%), Gaps = 2/51 (3%)
Query: 67 NNIDLVVIDFEYCSYNYRAFDIANHFVESVYDYSYKHFPHYTVKRENYPSY 117
I + + + ESVY YSY P+Y K YP Y
Sbjct: 221 PEPYDGSIRAYDDREKFDPDEYEDIIPESVYPYSYLKHPYY--KDLGYPDY 269
>gnl|CDD|219312 pfam07150, DUF1390, Protein of unknown function (DUF1390). This
family consists of several Paramecium bursaria
chlorella virus 1 (PBCV-1) proteins of around 250
residues in length. The function of this family is
unknown.
Length = 229
Score = 28.5 bits (64), Expect = 1.8
Identities = 11/23 (47%), Positives = 13/23 (56%)
Query: 47 NNNNNNNNNNNNNVNNSSNNNNI 69
N N NNN NN+N + N NI
Sbjct: 58 NINTGVVNNNVNNINKTINTKNI 80
>gnl|CDD|181732 PRK09258, PRK09258, 3-oxoacyl-(acyl carrier protein) synthase III;
Reviewed.
Length = 338
Score = 28.3 bits (64), Expect = 2.3
Identities = 8/29 (27%), Positives = 13/29 (44%)
Query: 124 VETYLSRMNQEDSTPESVLEEVKHFTLAS 152
VE + R+ ++T E + TL S
Sbjct: 157 VEATIDRLLAPETTREDFAQSFATLTLGS 185
>gnl|CDD|225714 COG3173, COG3173, Predicted aminoglycoside phosphotransferase
[General function prediction only].
Length = 321
Score = 28.2 bits (63), Expect = 2.4
Identities = 7/32 (21%), Positives = 12/32 (37%)
Query: 13 ADWLKKHLLKIKSPVTFCHNDLQEGNILYRES 44
WL+ + P H D + GN++
Sbjct: 184 IKWLEANRPPWAGPPVLVHGDYRPGNLIIDPG 215
>gnl|CDD|131944 TIGR02898, spore_YhcN_YlaJ, sporulation lipoprotein, YhcN/YlaJ
family. YhcN and YlaJ are predicted lipoproteins that
have been detected as spore proteins but not vegetative
proteins in Bacillus subtilis. Both appear to be
expressed under control of the RNA polymerase sigma-G
factor. The YlaJ-like members of this family have a
low-complexity, strongly acidic 40-residue C-terminal
domain that is not included in the seed alignment for
this model. A portion of the low-complexity region
between the lipoprotein signal sequence and the main
conserved region of the protein family was also excised
from the seed alignment [Cellular processes,
Sporulation and germination].
Length = 158
Score = 27.7 bits (62), Expect = 2.4
Identities = 9/30 (30%), Positives = 16/30 (53%)
Query: 42 RESPNNNNNNNNNNNNNNVNNSSNNNNIDL 71
+ N N + NNN +N +++ N+ DL
Sbjct: 23 PPNNNVGETNVMSKNNNGMNTTNDTNDGDL 52
Score = 25.8 bits (57), Expect = 9.6
Identities = 14/45 (31%), Positives = 16/45 (35%)
Query: 46 NNNNNNNNNNNNNNVNNSSNNNNIDLVVIDFEYCSYNYRAFDIAN 90
N N NNN N S NNN D A +IA+
Sbjct: 17 NAQKKNPPNNNVGETNVMSKNNNGMNTTNDTNDGDLYDVADEIAS 61
>gnl|CDD|217050 pfam02460, Patched, Patched family. The transmembrane protein
Patched is a receptor for the morphogene Sonic Hedgehog.
This protein associates with the smoothened protein to
transduce hedgehog signals.
Length = 801
Score = 28.1 bits (63), Expect = 2.5
Identities = 17/71 (23%), Positives = 28/71 (39%), Gaps = 2/71 (2%)
Query: 55 NNNNNVNNSSNNNNIDLVVIDFEYCSYNYRAFDIANHFVESVYDYSYKHFPHYTVKRENY 114
NN ++ N + ++ +V +FE S Y + F Y+ YK E
Sbjct: 500 NNPPDLTIPENRDRLNEMVDEFE--STPYSMGPNSTSFWLREYENFYKTNGSELEDEEKS 557
Query: 115 PSYSLRKSFVE 125
SY K F++
Sbjct: 558 WSYDELKWFLK 568
>gnl|CDD|240370 PTZ00342, PTZ00342, acyl-CoA synthetase; Provisional.
Length = 746
Score = 27.8 bits (62), Expect = 3.8
Identities = 12/27 (44%), Positives = 15/27 (55%)
Query: 44 SPNNNNNNNNNNNNNNVNNSSNNNNID 70
S N N NN +NVNN+ N NN +
Sbjct: 213 SKEININKEEKNNGSNVNNNGNKNNKE 239
>gnl|CDD|223607 COG0533, QRI7, Metal-dependent proteases with possible chaperone
activity [Posttranslational modification, protein
turnover, chaperones].
Length = 342
Score = 27.5 bits (62), Expect = 4.0
Identities = 14/49 (28%), Positives = 23/49 (46%), Gaps = 1/49 (2%)
Query: 98 DYSYKHFPHYTVKRENYP-SYSLRKSFVETYLSRMNQEDSTPESVLEEV 145
D FP VK +N S+S K+ V L ++ Q++ E E++
Sbjct: 189 DPDAFEFPRPMVKGKNLDFSFSGLKTAVLRLLKKLKQKEELNEEDKEDI 237
>gnl|CDD|234342 TIGR03752, conj_TIGR03752, integrating conjugative element protein,
PFL_4705 family. Members of this protein family are
found occasionally on plasmids such as the Pseudomonas
putida toluene catabolic TOL plasmid pWWO_p085. Usually,
however, they are found on the bacterial main chromosome
in regions flanked by markers of conjugative transfer
and/or transposition [Mobile and extrachromosomal
element functions, Plasmid functions].
Length = 472
Score = 27.3 bits (61), Expect = 4.5
Identities = 11/38 (28%), Positives = 19/38 (50%), Gaps = 4/38 (10%)
Query: 22 KIKSPVTFCHNDLQEGNILYRESPNNNNNNNNNNNNNN 59
+++S +TF ND G I P NN+ N ++ +
Sbjct: 309 QVRS-LTFVFND---GTIRTVPRPRNNSQTNGGDSGKS 342
>gnl|CDD|240174 cd05153, HomoserineK_II, Homoserine Kinase, type II. Homoserine
kinase is part of a larger superfamily that includes the
catalytic domains of other kinases, such as the typical
serine/threonine/tyrosine protein kinases (PKs), RIO
kinases, actin-fragmin kinase (AFK), and
phosphoinositide 3-kinase (PI3K). This subfamily is
composed of unusual homoserine kinases, from a subset of
bacteria, which have a PK fold. These proteins do not
bear any similarity to the GHMP family homoserine
kinases present in most bacteria and eukaryotes.
Homoserine kinase catalyzes the transfer of the
gamma-phosphoryl group from ATP to L-homoserine
producing L-homoserine phosphate, an intermediate in the
production of the amino acids threonine, methionine, and
isoleucine.
Length = 296
Score = 27.2 bits (61), Expect = 5.4
Identities = 6/17 (35%), Positives = 10/17 (58%)
Query: 73 VIDFEYCSYNYRAFDIA 89
VIDF + + +D+A
Sbjct: 197 VIDFYFACTDAFLYDLA 213
>gnl|CDD|191179 pfam05053, Menin, Menin. MEN1, the gene responsible for multiple
endocrine neoplasia type 1, is a tumour suppressor gene
that encodes a protein called Menin which may be an
atypical GTPase stimulated by nm23.
Length = 618
Score = 27.3 bits (60), Expect = 6.1
Identities = 13/17 (76%), Positives = 15/17 (88%)
Query: 43 ESPNNNNNNNNNNNNNN 59
E P NNNN+N+NNNNNN
Sbjct: 501 ELPANNNNSNSNNNNNN 517
Score = 26.5 bits (58), Expect = 8.4
Identities = 14/23 (60%), Positives = 16/23 (69%), Gaps = 3/23 (13%)
Query: 43 ESPN---NNNNNNNNNNNNNVNN 62
ESPN NNNN+N+NNNN N
Sbjct: 496 ESPNPELPANNNNSNSNNNNNNG 518
>gnl|CDD|226376 COG3858, COG3858, Predicted glycosyl hydrolase [General function
prediction only].
Length = 423
Score = 27.0 bits (60), Expect = 6.2
Identities = 14/51 (27%), Positives = 19/51 (37%), Gaps = 2/51 (3%)
Query: 48 NNNNNNNNNNNNVNNSSNNNNIDLVVIDFEYCSYNYRAFDIANHFVESVYD 98
NN N NN+ + V IDFE R ++ F+ V D
Sbjct: 187 NNETAKNRLINNIITLLDARGYRGVNIDFENVGPGDR--ELYTDFLRQVRD 235
>gnl|CDD|221143 pfam11593, Med3, Mediator complex subunit 3 fungal. Mediator is a
large complex of up to 33 proteins that is conserved
from plants to fungi to humans - the number and
representation of individual subunits varying with
species. It is arranged into four different sections, a
core, a head, a tail and a kinase-activity part, and the
number of subunits within each of these is what varies
with species. Overall, Mediator regulates the
transcriptional activity of RNA polymerase II but it
would appear that each of the four different sections
has a slightly different function. Mediator subunit
Hrs1/Med3 is a physical target for Cyc8-Tup1, a yeast
transcriptional co-repressor.
Length = 381
Score = 26.9 bits (59), Expect = 6.3
Identities = 11/45 (24%), Positives = 20/45 (44%), Gaps = 5/45 (11%)
Query: 32 NDLQEGNILYRESPNNNNNNNNNNNNNNVNNSSNNNNIDLVVIDF 76
DL + ++P N N N +N+ +N + +DL +D
Sbjct: 334 FDLNQN-----QTPQQLQPQNQQNMNMGMNDVNNFDLLDLNNLDL 373
>gnl|CDD|162605 TIGR01923, menE, O-succinylbenzoate-CoA ligase. This model
represents an enzyme, O-succinylbenzoate-CoA ligase,
which is involved in the fourth step of the menaquinone
biosynthesis pathway. O-succinylbenzoate-CoA ligase,
together with menB - naphtoate synthase, take
2-succinylbenzoate and convert it into 1,4-di-hydroxy-2-
naphtoate [Biosynthesis of cofactors, prosthetic groups,
and carriers, Menaquinone and ubiquinone].
Length = 436
Score = 27.0 bits (60), Expect = 6.5
Identities = 6/17 (35%), Positives = 9/17 (52%)
Query: 14 DWLKKHLLKIKSPVTFC 30
+L + L K K P+ F
Sbjct: 402 AYLTEKLAKYKVPIAFE 418
>gnl|CDD|237456 PRK13641, cbiO, cobalt transporter ATP-binding subunit;
Provisional.
Length = 287
Score = 26.7 bits (59), Expect = 7.7
Identities = 12/39 (30%), Positives = 22/39 (56%), Gaps = 1/39 (2%)
Query: 7 KDLNTEADWLKKHLLKIKSPVTFCHNDLQEGNILYRESP 45
K++ ++ +WLKKH L + F + L++G + E P
Sbjct: 230 KEIFSDKEWLKKHYLDEPATSRFA-SKLEKGGFKFSEMP 267
>gnl|CDD|214408 MTH00036, ATP8, ATP synthase F0 subunit 8; Validated.
Length = 54
Score = 24.7 bits (54), Expect = 7.8
Identities = 10/23 (43%), Positives = 15/23 (65%)
Query: 46 NNNNNNNNNNNNNNVNNSSNNNN 68
NN + N +N++ N SS+NNN
Sbjct: 28 LLNNWPSTNASNSSSNTSSSNNN 50
>gnl|CDD|236889 PRK11273, glpT, sn-glycerol-3-phosphate transporter; Provisional.
Length = 452
Score = 26.6 bits (59), Expect = 8.0
Identities = 21/61 (34%), Positives = 27/61 (44%), Gaps = 10/61 (16%)
Query: 98 DYSYKHFPHYTVKRENYPSYSLRKSF--------VETYLSRMNQEDSTPESVLEEVKHFT 149
DY+ KH T K + + Y L V YL R D +P + L+EVKHF
Sbjct: 230 DYNEKHEQELTAK-QIFMQYVLPNKLLWYIAIANVFVYLLRYGILDWSP-TYLKEVKHFA 287
Query: 150 L 150
L
Sbjct: 288 L 288
>gnl|CDD|218858 pfam06024, DUF912, Nucleopolyhedrovirus protein of unknown
function (DUF912). This family consists of several
Nucleopolyhedrovirus proteins of unknown function.
Length = 101
Score = 25.7 bits (57), Expect = 8.1
Identities = 8/25 (32%), Positives = 14/25 (56%)
Query: 46 NNNNNNNNNNNNNNVNNSSNNNNID 70
++N++NN N NN + N+I
Sbjct: 25 DDNDDNNAPINANNTQSVYPKNDIT 49
>gnl|CDD|133910 PHA00540, PHA00540, hypothetical protein.
Length = 715
Score = 26.5 bits (58), Expect = 8.4
Identities = 13/43 (30%), Positives = 25/43 (58%), Gaps = 1/43 (2%)
Query: 73 VIDFEYC-SYNYRAFDIANHFVESVYDYSYKHFPHYTVKRENY 114
+ DF Y + Y+ FD++ V++V Y H+P +K++N+
Sbjct: 143 LTDFIYAFAVKYKMFDVSKEIVDNVDRYKENHYPRVKLKQDNW 185
>gnl|CDD|221195 pfam11737, DUF3300, Protein of unknown function (DUF3300). This
hypothetical bacterial gene product has a long
hydrophobic segment and is thus likely to be a membrane
protein.
Length = 230
Score = 26.1 bits (58), Expect = 9.5
Identities = 9/22 (40%), Positives = 12/22 (54%)
Query: 47 NNNNNNNNNNNNNVNNSSNNNN 68
N+N+NN N NN+ SS
Sbjct: 205 NHNHNNRINRNNDRVVSSGGQR 226
>gnl|CDD|240232 PTZ00021, PTZ00021, falcipain-2; Provisional.
Length = 489
Score = 26.3 bits (58), Expect = 9.9
Identities = 17/62 (27%), Positives = 24/62 (38%)
Query: 6 SKDLNTEADWLKKHLLKIKSPVTFCHNDLQEGNILYRESPNNNNNNNNNNNNNNVNNSSN 65
S D N D++ LLK + F + LQE Y + NN N+ +
Sbjct: 68 SLDENNNDDYIINSLLKSPNGKKFIVSKLQELISSYDKEKNNQETKNSGELKTFADFDGK 127
Query: 66 NN 67
NN
Sbjct: 128 NN 129
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.315 0.131 0.403
Gapped
Lambda K H
0.267 0.0767 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 8,801,515
Number of extensions: 787408
Number of successful extensions: 2347
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1840
Number of HSP's successfully gapped: 205
Length of query: 174
Length of database: 10,937,602
Length adjustment: 90
Effective length of query: 84
Effective length of database: 6,945,742
Effective search space: 583442328
Effective search space used: 583442328
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 56 (25.3 bits)