RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy15664
(174 letters)
>1nw1_A Choline kinase (49.2 KD); phospholipid synthesis, protein kinase
fold, transferase; 2.02A {Caenorhabditis elegans} SCOP:
d.144.1.8
Length = 429
Score = 128 bits (322), Expect = 5e-36
Identities = 67/183 (36%), Positives = 95/183 (51%), Gaps = 9/183 (4%)
Query: 1 MKKILSKDLNTEADWLKKHLLKIKSPVTFCHNDLQEGNILYRESPNNN----NNNNNNNN 56
+ + DL E ++L+ H+ KSPVTFCHNDLQEGNIL ++ + N + ++
Sbjct: 223 VSSVNCLDLARELEFLRAHISLSKSPVTFCHNDLQEGNILLPKASSGNIRMPSLSDETQA 282
Query: 57 NNNVNNSSNNNNIDLVVIDFEYCSYNYRAFDIANHFVESVYDYSYKHFPHYTVKRENYPS 116
N ++ N + LV+IDFEY SYNYRAFD ANHF+E DY P Y ++ EN+P
Sbjct: 283 LGNSLSAFNPADPRLVLIDFEYASYNYRAFDFANHFIEWTIDYDIDEAPFYKIQTENFPE 342
Query: 117 YSLRKSFVETYLSRMNQEDSTP-----ESVLEEVKHFTLASHFFWALWSFVHDDTSEISF 171
F YL E +++E F SHFFW +W + + S + F
Sbjct: 343 NDQMLEFFLNYLREQGNTRENELYKKSEDLVQETLPFVPVSHFFWGVWGLLQVELSPVGF 402
Query: 172 GYW 174
G+
Sbjct: 403 GFA 405
>3feg_A Choline/ethanolamine kinase; non-protein kinase, choline kinase,
structural genomics CONS SGC, hemicholinium-3,
phosphorylation; HET: HC7 ADP AMP; 1.30A {Homo sapiens}
PDB: 3lq3_A* 2ig7_A*
Length = 379
Score = 119 bits (298), Expect = 8e-33
Identities = 67/171 (39%), Positives = 90/171 (52%), Gaps = 28/171 (16%)
Query: 12 EADWLKKHLLKIKSPVTFCHNDLQEGNILYRESPNNNNNNNNNNNNNNVNNSSNNNNIDL 71
E L+K L SPV FCHND+QEGNIL P N ++ L
Sbjct: 205 EMGNLRKLLESTPSPVVFCHNDIQEGNILLLSEPENADS--------------------L 244
Query: 72 VVIDFEYCSYNYRAFDIANHFVESVYDYSYKHFPHYTVKRENYPSYSLRKSFVETYLSRM 131
+++DFEY SYNYR FDI NHF E VYDY+++ +P Y + +YP+ + F+ YL+
Sbjct: 245 MLVDFEYSSYNYRGFDIGNHFCEWVYDYTHEEWPFYKARPTDYPTQEQQLHFIRHYLAEA 304
Query: 132 NQEDSTP--------ESVLEEVKHFTLASHFFWALWSFVHDDTSEISFGYW 174
+ ++ E +L EV + LASHFFW LWS + S I FGY
Sbjct: 305 KKGETLSQEEQRKLEEDLLVEVSRYALASHFFWGLWSILQASMSTIEFGYL 355
>3f2s_A CK, chetk-alpha, choline kinase alpha; non-protein kinase,
structural genomics consortium, SGC, hemicholinium-3,
alternative splicing, cytoplasm; HET: ADP HC6; 1.70A
{Homo sapiens} PDB: 3f2r_A* 3g15_A* 2i7q_A 2cko_A
2ckp_A* 2ckq_A*
Length = 401
Score = 117 bits (293), Expect = 5e-32
Identities = 72/183 (39%), Positives = 90/183 (49%), Gaps = 27/183 (14%)
Query: 1 MKKILSKDLNTEADWLKKHLLKIKSPVTFCHNDLQEGNILYRESPNNNNNNNNNNNNNNV 60
+ K+LS +L E + L+ L SPV FCHND QEGNIL E N+
Sbjct: 218 LHKLLSYNLPLELENLRSLLESTPSPVVFCHNDCQEGNILLLEGRENSEKQK-------- 269
Query: 61 NNSSNNNNIDLVVIDFEYCSYNYRAFDIANHFVESVYDYSYKHFPHYTVKRENYPSYSLR 120
L++IDFEY SYNYR FDI NHF E +YDYSY+ +P + YP+ +
Sbjct: 270 ----------LMLIDFEYSSYNYRGFDIGNHFCEWMYDYSYEKYPFFRANIRKYPTKKQQ 319
Query: 121 KSFVETYLSRMNQEDSTP---------ESVLEEVKHFTLASHFFWALWSFVHDDTSEISF 171
F+ +YL + E +L EV F LASHF W LWS V S I F
Sbjct: 320 LHFISSYLPAFQNDFENLSTEEKSIIKEEMLLEVNRFALASHFLWGLWSIVQAKISSIEF 379
Query: 172 GYW 174
GY
Sbjct: 380 GYM 382
>2qg7_A Ethanolamine kinase PV091845; malaria, SGC, structural genomics
consortium, transferase; 2.41A {Plasmodium vivax}
Length = 458
Score = 98.7 bits (244), Expect = 7e-25
Identities = 40/181 (22%), Positives = 61/181 (33%), Gaps = 24/181 (13%)
Query: 7 KDLNTEADWLKKHLLKIKSPVTFCHNDLQEGNILYRE-------------SPNNNNNNNN 53
L ++ + SP+ CH DL NI+ +
Sbjct: 270 DVLRDSIVEVESLCKRENSPIVLCHCDLLSSNIINTVGGGEAGELGEAGETGEGGETGEG 329
Query: 54 NNNNNNVNNSSNNNNIDLVVIDFEYCSYNYRAFDIANHFVESVYDYSYKHFPHYTVKREN 113
+ IDFEY RA+DIANHF E + + +
Sbjct: 330 GETGEGGETGEGGEGDSISFIDFEYSCPMERAYDIANHFNE---------YAGFNCDWDL 380
Query: 114 YPSYSLRKSFVETYLSRMNQEDSTPESVLEEVKHFTLASHFFWALWSFVHDDTSEISFGY 173
PS F+ YL ++E ++ E++ F + SH W LWS + S I F +
Sbjct: 381 TPSKEEEYHFIMHYLGTDDEEL--INQLIREIQPFYICSHINWGLWSLLQGMHSSIDFDF 438
Query: 174 W 174
Sbjct: 439 I 439
>3mes_A Choline kinase; malaria, structural genomics, structural genomics
consortium, SGC, transferase; HET: ADP DME PT3; 2.35A
{Cryptosporidium parvum}
Length = 424
Score = 97.5 bits (241), Expect = 2e-24
Identities = 51/178 (28%), Positives = 78/178 (43%), Gaps = 33/178 (18%)
Query: 5 LSKDLNTEADWLKKHLLKIKSPVTFCHNDLQEGNILYRESPNNNNNNNNNNNNNNVNNSS 64
+ + + L+ L + F HNDLQE N+L ++
Sbjct: 240 MGGEKFSMERALELKLYSPAFSLVFAHNDLQENNLLQTQNN------------------- 280
Query: 65 NNNNIDLVVIDFEYCSYNYRAFDIANHFVESVYDYSYKHFPHYTVKRENYPSYSLRKSFV 124
+ +ID+EY + N+ DIAN+F E +YDY + P++ K E+YP LRK F+
Sbjct: 281 ------IRMIDYEYSAINFAGADIANYFCEYIYDYCSEKQPYFKFKYEDYPCEELRKLFI 334
Query: 125 ETYLSRMNQEDSTP-----ESVLEEVKHFTLASHFFWALWSFV---HDDTSEISFGYW 174
YLS+ QE P + + V+ FTL SH W LWS + + F +
Sbjct: 335 SVYLSQTLQEQVMPSQQIVHIMTKAVEVFTLISHITWGLWSIARTPGYQPNSVEFDFT 392
>3c5i_A Choline kinase; choline, kinase, malaria, transferase, structural
genomics, structural genomics consortium; 2.20A
{Plasmodium knowlesi} PDB: 3fi8_A*
Length = 369
Score = 91.2 bits (225), Expect = 2e-22
Identities = 52/181 (28%), Positives = 78/181 (43%), Gaps = 33/181 (18%)
Query: 2 KKILSKDLNTEADWLKKHLLKIKSPVTFCHNDLQEGNILYRESPNNNNNNNNNNNNNNVN 61
K I D + + + + + FCHNDLQE NI+
Sbjct: 187 KYIKESDKFIKFMKVYSKSDNLANTIVFCHNDLQENNII--------------------- 225
Query: 62 NSSNNNNIDLVVIDFEYCSYNYRAFDIANHFVESVYDYSYKHFPHYTVKRENYPSYSLRK 121
N N L +IDFEY +N+ A DIAN F+E+ DYS +P + + ++ Y SY RK
Sbjct: 226 ----NTNKCLRLIDFEYSGFNFLATDIANFFIETSIDYSVSSYPFFEIDKKKYISYENRK 281
Query: 122 SFVETYLSRMNQEDSTP------ESVLEEVKHFTLASHFFWALWSFV--HDDTSEISFGY 173
F+ YLS + + +LE V+ L +H W WS + + S F +
Sbjct: 282 LFITAYLSNYLDKSLVVPTPKLIDEILEAVEVQALGAHLLWGFWSIIRGYQTKSYNEFDF 341
Query: 174 W 174
+
Sbjct: 342 F 342
>3dxq_A Choline/ethanolamine kinase family protein; NP_106042.1, STR
genomics, joint center for structural genomics, JCSG,
prote structure initiative; HET: MSE; 2.55A
{Mesorhizobium loti}
Length = 301
Score = 82.5 bits (203), Expect = 2e-19
Identities = 22/168 (13%), Positives = 41/168 (24%), Gaps = 48/168 (28%)
Query: 7 KDLNTEADWLKKHLLKIKSPVTFCHNDLQEGNILYRESPNNNNNNNNNNNNNNVNNSSNN 66
D+ EA ++ L P+ CH D N L
Sbjct: 153 HDVVREAGGVRSALAAHPLPLAACHCDPLCENFLD------------------------- 187
Query: 67 NNIDLVVIDFEYCSYNYRAFDIANHFVESVYDYSYKHFPHYTVKRENYPSYSLRKSFVET 126
+ ++D+EY N +D+ + V E + + + +
Sbjct: 188 TGERMWIVDWEYSGMNDPLWDLGDLSV------------------EGKFNANQDEELMRA 229
Query: 127 YLSRMNQEDSTPESVLEEVKHFTLASHFFWALWSFVHDDTSEISFGYW 174
Y + V + W LW + +
Sbjct: 230 YFGGEARPAE-----RGRVVIYKAMCDLLWTLWGLIQLANDNPVDDFR 272
>3i1a_A Spectinomycin phosphotransferase; protein kinase, aminoglycoside
phosphotransferase, antibiotic resistance; HET: MES PG4;
1.70A {Legionella pneumophila} PDB: 3i0q_A* 3i0o_A*
3q2m_A*
Length = 339
Score = 42.4 bits (99), Expect = 2e-05
Identities = 11/78 (14%), Positives = 24/78 (30%), Gaps = 24/78 (30%)
Query: 12 EADWLKKHLLKIKSPVTFCHNDLQEGNILYRESPNNNNNNNNNNNNNNVNNSSNNNNIDL 71
++ L K + CH+D+ GN+L + +
Sbjct: 191 TSEKLSKKIQPDLDKYVLCHSDIHAGNVLVGNEES------------------------I 226
Query: 72 VVIDFEYCSYNYRAFDIA 89
+ID++ + D+
Sbjct: 227 YIIDWDEPMLAPKERDLM 244
>2pyw_A Uncharacterized protein; 5-methylthioribose kinase, plant
methionine recycling, refol transferase; HET: SR1 ADP;
1.90A {Arabidopsis thaliana}
Length = 420
Score = 42.3 bits (98), Expect = 3e-05
Identities = 20/114 (17%), Positives = 31/114 (27%), Gaps = 28/114 (24%)
Query: 8 DLNTEADWLKKHLLKIKSPVTFCHNDLQEGNILYRESPNNNNNNNNNNNNNNVNNSSNNN 67
L E LK + H DL G+++
Sbjct: 215 ALKLEIAELKSMFCE--RAQALIHGDLHTGSVMV-------------------------T 247
Query: 68 NIDLVVIDFEYCSYNYRAFDIANHFVESVYDY-SYKHFPHYTVKRENYPSYSLR 120
VID E+ Y FDI + + + + R+ Y + LR
Sbjct: 248 QDSTQVIDPEFSFYGPMGFDIGAYLGNLILAFFAQDGHATQENDRKEYKQWILR 301
>2olc_A MTR kinase, methylthioribose kinase; kinase ADP-2HO complex,
transferase; HET: CPS ADP; 2.00A {Bacillus subtilis}
SCOP: d.144.1.6 PDB: 2pu8_A* 2pui_A* 2pul_A* 2pun_A*
2pup_A*
Length = 397
Score = 42.2 bits (98), Expect = 3e-05
Identities = 24/127 (18%), Positives = 38/127 (29%), Gaps = 29/127 (22%)
Query: 8 DLNTEADWLKKHLLKIKSPVTFCHNDLQEGNILYRESPNNNNNNNNNNNNNNVNNSSNNN 67
+ EA LKK L T H DL G+I E
Sbjct: 210 SVKIEAAKLKKSFLTSAE--TLIHGDLHTGSIFASEH----------------------- 244
Query: 68 NIDLVVIDFEYCSYNYRAFDIANHFVESVYDYSYKHFPHYTVKRENYPSYSLRKSFVETY 127
+ VID E+ Y FD+ + + E+ + ++F ET+
Sbjct: 245 --ETKVIDPEFAFYGPIGFDVGQFIANLFLNALSRDGADREPLYEHV--NQVWETFEETF 300
Query: 128 LSRMNQE 134
++
Sbjct: 301 SEAWQKD 307
>2q83_A YTAA protein; 2635576, structural genomics, joint center for
structu genomics, JCSG, protein structure initiative,
PSI-2, transf; HET: ADN CIT UNL; 2.50A {Bacillus
subtilis}
Length = 346
Score = 37.3 bits (86), Expect = 0.001
Identities = 13/79 (16%), Positives = 20/79 (25%), Gaps = 24/79 (30%)
Query: 12 EADWLKKHLLKIKSPVTFCHNDLQEGNILYRESPNNNNNNNNNNNNNNVNNSSNNNNIDL 71
++K CH D GN L N +
Sbjct: 207 LQSTYVPWTEQLKKSPNLCHQDYGTGNTLL------------------------GENEQI 242
Query: 72 VVIDFEYCSYNYRAFDIAN 90
VID + S++ D+
Sbjct: 243 WVIDLDTVSFDLPIRDLRK 261
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 36.2 bits (83), Expect = 0.004
Identities = 14/95 (14%), Positives = 27/95 (28%), Gaps = 21/95 (22%)
Query: 80 SYNYRAFDIANHFVESVYDYSYKHFPHYTVKRENYPSYSLRKSFVETYL--SRMNQEDST 137
+Y+ R +++ +E V F + L++ F + + D
Sbjct: 3 AYSTRPLTLSHGSLEHVLLVPTASFFIASQ---------LQEQFNKILPEPTEGFAADDE 53
Query: 138 PESVLEEVKHFTLASHFFWALWSFVHDDTSEISFG 172
P + E L F +V G
Sbjct: 54 PTTPAE------LVGKFL----GYVSSLVEPSKVG 78
Score = 30.0 bits (67), Expect = 0.43
Identities = 17/103 (16%), Positives = 35/103 (33%), Gaps = 34/103 (33%)
Query: 100 SYKHFPHYTV----------KRENYPSY-----SLRKSFVETYLSRMNQEDSTPESVLEE 144
Y+ +P+ ++ E PS +L + V+ Y+++ N + V E
Sbjct: 310 CYEAYPNTSLPPSILEDSLENNEGVPSPMLSISNLTQEQVQDYVNKTNSHLPAGKQV--E 367
Query: 145 V------KHFTLASHFFWALWSFV----------HDDTSEISF 171
+ K+ ++ +L+ D S I F
Sbjct: 368 ISLVNGAKNLVVSGPPQ-SLYGLNLTLRKAKAPSGLDQSRIPF 409
>1nd4_A Aminoglycoside 3'-phosphotransferase; protein kinase, ATPase,
kanamycin; HET: KAN; 2.10A {Klebsiella pneumoniae} SCOP:
d.144.1.6
Length = 264
Score = 35.4 bits (81), Expect = 0.005
Identities = 13/78 (16%), Positives = 16/78 (20%), Gaps = 27/78 (34%)
Query: 13 ADWLKKHLLKIKSPVTFCHNDLQEGNILYRESPNNNNNNNNNNNNNNVNNSSNNNNIDLV 72
LK + + V H D NI+
Sbjct: 171 FARLKARMPDGEDLV-VTHGDACLPNIMVENG-------------------------RFS 204
Query: 73 -VIDFEYCSYNYRAFDIA 89
ID R DIA
Sbjct: 205 GFIDCGRLGVADRYQDIA 222
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 36.0 bits (82), Expect = 0.005
Identities = 17/101 (16%), Positives = 30/101 (29%), Gaps = 33/101 (32%)
Query: 80 SYN-YRAFDIANHFVESVYD-YSYKHFPHYTVKRENYPSYSL-RKSF------------- 123
YN + FD ++ + D Y Y H H+ E+ +L R F
Sbjct: 452 HYNIPKTFD-SDDLIPPYLDQYFYSHIGHHLKNIEHPERMTLFRMVFLDFRFLEQKIRHD 510
Query: 124 ----------------VETYLSRMNQEDSTPESVLEEVKHF 148
++ Y + D E ++ + F
Sbjct: 511 STAWNASGSILNTLQQLKFYKPYICDNDPKYERLVNAILDF 551
Score = 31.7 bits (71), Expect = 0.13
Identities = 18/108 (16%), Positives = 42/108 (38%), Gaps = 19/108 (17%)
Query: 74 IDFEYCSYNYRAFDIANHFVES-VYDYSYKHFPHYTVKRENYPSYSLRKSFVETYLSRMN 132
+DFE + Y+ DI + F ++ V ++ K ++ P L K ++ + +
Sbjct: 7 MDFETGEHQYQYKDILSVFEDAFVDNFDCKDV-------QDMPKSILSKEEIDHIIMSKD 59
Query: 133 QEDST----------PESVLEEVKHFTLASHFFWALWSFVHDDTSEIS 170
T E ++++ L ++ + L S + + + S
Sbjct: 60 AVSGTLRLFWTLLSKQEEMVQKFVEEVLRINYKF-LMSPIKTEQRQPS 106
Score = 31.0 bits (69), Expect = 0.21
Identities = 27/190 (14%), Positives = 61/190 (32%), Gaps = 44/190 (23%)
Query: 2 KKILSKDLNTEADWLKKHLLKIKSPVTFCHNDLQEGNILYRESPNNNNNNNNNNNNNNVN 61
+K + + L +L SP+ +Y E + N+N NV+
Sbjct: 80 QKFVEEVLRINYKFLM-------SPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVS 132
Query: 62 -------------NSSNNNNIDL--------------VVIDFEY-CSYNYRAF------- 86
N+ + V + ++ C +++ F
Sbjct: 133 RLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNC 192
Query: 87 DIANHFVESVYDYSYKHFPHYTVKRENYPSYSLRKSFVETYLSRMNQEDSTPES--VLEE 144
+ +E + Y+ P++T + ++ + LR ++ L R+ + VL
Sbjct: 193 NSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLN 252
Query: 145 VKHFTLASHF 154
V++ + F
Sbjct: 253 VQNAKAWNAF 262
Score = 27.9 bits (61), Expect = 2.3
Identities = 17/99 (17%), Positives = 32/99 (32%), Gaps = 21/99 (21%)
Query: 2 KKILSKDLNTEADWLKKHLLKIKSPVTFCHNDLQEGNI--LYRESPNNNNN--NNNNNNN 57
K +L K L+ L + +L +P + I R+ +N + N +
Sbjct: 304 KSLLLKYLDCRPQDLPREVLTT-NP-------RRLSIIAESIRDGLATWDNWKHVNCDKL 355
Query: 58 NNVNNSSNNNNIDLVVIDFEYCSYNYRAFDIANHFVESV 96
+ SS L V++ + + F S
Sbjct: 356 TTIIESS------LNVLEPAEYRKMFDRLSV---FPPSA 385
>3tm0_A Aminoglycoside 3'-phosphotransferase; protein kinase,
phosphorylation, transferase-antibiotic COMP; HET: ANP
B31; 2.10A {Enterococcus faecalis} PDB: 2b0q_A* 1l8t_A*
3q2j_A* 1j7i_A* 1j7u_A* 3h8p_A* 1j7l_A* 2bkk_A*
Length = 263
Score = 33.8 bits (77), Expect = 0.018
Identities = 18/115 (15%), Positives = 29/115 (25%), Gaps = 41/115 (35%)
Query: 13 ADWLKKHLLKIKSPVTFCHNDLQEGNILYRESPNNNNNNNNNNNNNNVNNSSNNNNIDLV 72
D+LK + + F H DL + NI + + V
Sbjct: 171 YDFLKTEKPE--EELVFSHGDLGDSNIFVK--------------DGKV----------SG 204
Query: 73 VIDFEYCSYNYRAFDIANHFVESVYDYSYKHFPHYTVKRENYPSYSLRKSFVETY 127
ID + +DIA RE+ + F +
Sbjct: 205 FIDLGRSGRADKWYDIA---------------FCVRSIREDIGEEQYVELFFDLL 244
>3r70_A Aminoglycoside phosphotransferase; structural genomics, center for
structural genomics of infec diseases, csgid; HET: MSE
ADP PE3; 1.80A {Escherichia coli} PDB: 3r6z_A* 3uzr_A*
4dca_A* 3hav_A* 3ham_A*
Length = 320
Score = 32.8 bits (74), Expect = 0.037
Identities = 22/169 (13%), Positives = 44/169 (26%), Gaps = 46/169 (27%)
Query: 1 MKKILSKDLNTEADWLKKHLLKIKSPVTFCHNDLQEGNILYRESPNNNNNNNNNNNNNNV 60
+ + + + T + + + + K HND N+++R NN +
Sbjct: 181 LTDEMLEHIETIYENILSNAVLFKYTPCLVHNDFSANNMIFR--------------NNRL 226
Query: 61 NNSSNNNNIDLVVIDFEYCSYNYRAFDIANHFVESVYDYSYKHFPHYTVKRENYPSYSLR 120
VIDF + D S D+
Sbjct: 227 F----------GVIDFGDFNVGDPDNDFLCLLDCSTDDF--------------------G 256
Query: 121 KSFVETYLSRMNQEDSTPESVLEEVKHFTLASHFFWALWSFVHDDTSEI 169
K F L + PE + + + ++ + D +
Sbjct: 257 KEFGRKVLKYYQHKA--PEVAERKAELNDVYWSIDQIIYGYERKDREML 303
>4fev_A Aminoglycoside 3'-phosphotransferase APHA1-IAB; pyrazolopyrimidine,
PP1, protein kinase inhibitor; HET: KAN PP1; 1.89A
{Acinetobacter baumannii} PDB: 4feu_A* 4few_A* 4fex_A*
4ej7_A* 3r78_A*
Length = 272
Score = 31.9 bits (72), Expect = 0.071
Identities = 13/78 (16%), Positives = 19/78 (24%), Gaps = 27/78 (34%)
Query: 13 ADWLKKHLLKIKSPVTFCHNDLQEGNILYRESPNNNNNNNNNNNNNNVNNSSNNNNIDLV 72
+ K L V H D N+++ E L+
Sbjct: 180 WKEMHKLLPFSPDSV-VTHGDFSLDNLIFDEG-------------------------KLI 213
Query: 73 -VIDFEYCSYNYRAFDIA 89
ID R D+A
Sbjct: 214 GCIDVGRVGIADRYQDLA 231
>1zyl_A Hypothetical protein YIHE; putative protein kinase, structural
genomics, PSI, protein structure initiative; 2.80A
{Escherichia coli} SCOP: d.144.1.6
Length = 328
Score = 30.4 bits (68), Expect = 0.29
Identities = 13/92 (14%), Positives = 23/92 (25%), Gaps = 27/92 (29%)
Query: 1 MKKILSKDLNTEADWLKKHLLKIKSPVTFCHNDLQEGNILYRESPNNNNNNNNNNNNNNV 60
+K K + + H + V H D GNIL+R+
Sbjct: 170 LKAAFLKATDELIAAVTAHWRE-DFTVLRLHGDCHAGNILWRD----------------- 211
Query: 61 NNSSNNNNIDLVVIDFEYCSYNYRAFDIANHF 92
+ +D + D+
Sbjct: 212 ---------GPMFVDLDDARNGPAVQDLWMLL 234
>3sg8_A APH(2'')-ID; antibiotic resistance enzyme, transferase,
aminoglycoside, phosphorylation, transferase-antibiotic
complex; HET: TOY; 1.80A {Enterococcus casseliflavus}
PDB: 3sg9_A* 3n4v_A 3n4t_A 3n4u_A 3r81_A* 3r80_A*
3r7z_A* 3r82_A* 3vcq_A* 4dbx_A 4de4_A* 4dfb_A* 4dfu_A*
4dt9_A* 4dt8_A* 4dtb_A* 3sgc_A 4dta_A* 3lzh_A
Length = 304
Score = 28.6 bits (64), Expect = 0.85
Identities = 8/29 (27%), Positives = 12/29 (41%), Gaps = 1/29 (3%)
Query: 13 ADWLKKHLLKIKSPVTFCHNDLQEGNILY 41
D L+ + K HND +IL+
Sbjct: 178 RDILENEIYF-KYYPCLIHNDFSSDHILF 205
>2jbh_A Phosphoribosyltransferase domain-containing prote;
glycosyltransferase, purine salvage; HET: 5GP; 1.7A
{Homo sapiens}
Length = 225
Score = 28.6 bits (64), Expect = 0.88
Identities = 12/43 (27%), Positives = 18/43 (41%), Gaps = 8/43 (18%)
Query: 83 YRAFDIANHFVESV-Y--DYS--YKHFPH-YTVKRENYPSYSL 119
Y F+I N FV V Y DY+ ++ H + Y +
Sbjct: 185 YAGFEIPNLFV--VGYALDYNEYFRDLNHICVINEHGKEKYRV 225
>3ozf_A Hypoxanthine-guanine-xanthine phosphoribosyltrans;
transferase-transferase inhibitor complex; HET: HPA;
1.94A {Plasmodium falciparum fcr-3} PDB: 3ozg_A* 1cjb_A*
Length = 250
Score = 28.0 bits (63), Expect = 1.4
Identities = 13/42 (30%), Positives = 18/42 (42%), Gaps = 8/42 (19%)
Query: 83 YRAFDIANHFVESV-Y--DYS--YKHFPH-YTVKRENYPSYS 118
+ F I +HFV V Y DY+ ++ H V E Y
Sbjct: 207 FVGFSIPDHFV--VGYSLDYNEIFRDLDHCCLVNDEGKKKYK 246
>1z7g_A HGPRT, HGPRTASE, hypoxanthine-guanine phosphoribosyltransferase;
flexibility, trans CIS peptide bond isomerization,
nucleotide binding; 1.90A {Homo sapiens} SCOP: c.61.1.1
PDB: 1hmp_A* 1bzy_A 3gep_A* 3ggc_A* 3ggj_A* 1d6n_A*
2vfa_A*
Length = 217
Score = 27.9 bits (63), Expect = 1.4
Identities = 10/41 (24%), Positives = 17/41 (41%), Gaps = 8/41 (19%)
Query: 83 YRAFDIANHFVESV-Y--DYS--YKHFPH-YTVKRENYPSY 117
+ F+I + FV V Y DY+ ++ H + Y
Sbjct: 177 FVGFEIPDKFV--VGYALDYNEYFRDLNHVCVISETGKAKY 215
>1fsg_A HGPRTASE, hypoxanthine-guanine phosphoribosyltransferase;
glycosyltransferase, purine salvage; HET: PRP 9DG; 1.05A
{Toxoplasma gondii} SCOP: c.61.1.1 PDB: 1qk3_A* 1qk4_A*
1qk5_A* 1dbr_A
Length = 233
Score = 27.2 bits (61), Expect = 2.2
Identities = 5/41 (12%), Positives = 15/41 (36%), Gaps = 8/41 (19%)
Query: 83 YRAFDIANHFVESV-----YDYSYKHFPH-YTVKRENYPSY 117
+ F I + ++ V ++ ++ F H + +
Sbjct: 193 FVGFSIEDVWI--VGCCYDFNEMFRDFDHVAVLSDAARKKF 231
>3hoc_A Filamin-A; calponin homology domain, actin binding domain,
acetylation, actin-binding, alternative splicing,
cytoplasm, cytoskeleton; 2.30A {Homo sapiens} PDB:
3hop_A 3hor_A 2wfn_A
Length = 272
Score = 27.3 bits (60), Expect = 2.3
Identities = 11/81 (13%), Positives = 22/81 (27%), Gaps = 4/81 (4%)
Query: 15 WLKKHLLKIKSPVTFCHNDLQEGNILYR----ESPNNNNNNNNNNNNNNVNNSSNNNNID 70
W +HL + + DL +G L S + +N N +
Sbjct: 55 WCNEHLKCVSKRIANLQTDLSDGLRLIALLEVLSQKKMHRKHNQRPTFRQMQLENVSVAL 114
Query: 71 LVVIDFEYCSYNYRAFDIANH 91
+ + + I +
Sbjct: 115 EFLDRESIKLVSIDSKAIVDG 135
>3ats_A Putative uncharacterized protein; hypothetical protein, putative
aminoglycoside phosphortransf transferase; 1.67A
{Mycobacterium tuberculosis} PDB: 3att_A*
Length = 357
Score = 27.0 bits (60), Expect = 3.8
Identities = 9/32 (28%), Positives = 13/32 (40%), Gaps = 2/32 (6%)
Query: 13 ADWLKKHL--LKIKSPVTFCHNDLQEGNILYR 42
+WL+ H D + GN+LYR
Sbjct: 206 FEWLQSHWPDDAAAREPVLLWGDARVGNVLYR 237
>1tc1_A Protein (hypoxanthine phosphoribosyltransferase);
transferase,phosphoribosyltransferase, purine salvage,
nucleotide metabolism; HET: FMB MES; 1.41A {Trypanosoma
cruzi} SCOP: c.61.1.1 PDB: 1tc2_A* 1p19_A* 1p18_A*
1p17_A* 1i0l_A* 1i14_A* 1i0i_A* 1i13_A*
Length = 220
Score = 26.4 bits (59), Expect = 4.3
Identities = 10/38 (26%), Positives = 16/38 (42%), Gaps = 8/38 (21%)
Query: 83 YRAFDIANHFVESV-----YDYSYKHFPH-YTVKRENY 114
Y +I N FV + YD +Y+ ++ E Y
Sbjct: 154 YVVANIPNAFV--IGYGLDYDDTYRELRDIVVLRPEVY 189
>1pzm_A HGPRT, hypoxanthine-guanine phosphoribosyltransferase; HET: 5GP;
2.10A {Leishmania tarentolae} SCOP: c.61.1.1
Length = 211
Score = 26.0 bits (58), Expect = 5.9
Identities = 9/38 (23%), Positives = 14/38 (36%), Gaps = 8/38 (21%)
Query: 83 YRAFDIANHFVESV-----YDYSYKHFPH-YTVKRENY 114
Y I FV + + SY+ +K+E Y
Sbjct: 169 YPVITIPRAFV--IGYGMDFAESYRELRDICVLKKEYY 204
>2vuw_A Serine/threonine-protein kinase haspin; cell cycle, transferase,
CAsp8, nucleotide binding; HET: MSE 5ID MPD; 1.80A {Homo
sapiens} PDB: 3f2n_A* 3e7v_A* 3dlz_A* 3fmd_A* 3iq7_A*
2wb8_A
Length = 336
Score = 26.4 bits (57), Expect = 6.0
Identities = 11/64 (17%), Positives = 27/64 (42%), Gaps = 4/64 (6%)
Query: 20 LLKIKSPVTFCHNDLQEGNILYRESPNNNNNNNNNNNNNNVNNSSNNNNIDLVVIDFEYC 79
L ++ + F H DL GN+L +++ + N ++ + + + + +ID+
Sbjct: 174 LAVAEASLRFEHRDLHWGNVLLKKTSLKKLHYTLNGKSSTIPSC----GLQVSIIDYTLS 229
Query: 80 SYNY 83
Sbjct: 230 RLER 233
>3hvu_A Hypoxanthine phosphoribosyltransferase; hypoxanthine-guanine
phosphoribosyltransferase, 2-(N-morphol ethanesulfonic
acid (MES), IDP01892; HET: MES; 1.95A {Bacillus
anthracis str} PDB: 3h83_A* 3kb8_A*
Length = 204
Score = 26.0 bits (58), Expect = 6.6
Identities = 10/40 (25%), Positives = 17/40 (42%), Gaps = 8/40 (20%)
Query: 83 YRAFDIANHFVESV-----YDYSYKHFPH-YTVKRENYPS 116
Y F + + FV V Y Y++ P+ +K Y +
Sbjct: 167 YVGFTVPHEFV--VGYGLDYKEQYRNLPYVGVLKPSVYSN 204
>2geb_A Hypoxanthine-guanine phosphoribosyltransferase; HGPRT, mutant,
inhibitor design, selectivity; 1.70A {Thermoanaerobacter
tengcongensis}
Length = 185
Score = 25.5 bits (57), Expect = 7.5
Identities = 12/38 (31%), Positives = 16/38 (42%), Gaps = 8/38 (21%)
Query: 83 YRAFDIANHFVESV-----YDYSYKHFPH-YTVKRENY 114
Y F I + FV V Y Y++ P +K E Y
Sbjct: 149 YCGFKIPDKFV--VGYGIDYAEKYRNLPFIGVLKPELY 184
>1hgx_A HGXPRTASE, hypoxanthine-guanine-xanthine phosphoribosyltransferase;
glycosyltransferase, purine salvage, transferase
(glycosyltransferase); HET: 5GP; 1.90A {Tritrichomonas
foetus} SCOP: c.61.1.1
Length = 183
Score = 25.5 bits (57), Expect = 7.6
Identities = 7/38 (18%), Positives = 15/38 (39%), Gaps = 8/38 (21%)
Query: 83 YRAFDIANHFVESV-----YDYSYKHFPH-YTVKRENY 114
Y F + N ++ + + Y++ P +K Y
Sbjct: 147 YCGFVVENRYI--IGYGFDFHNKYRNLPVIGILKESVY 182
>1yfz_A Hypoxanthine-guanine phosphoribosyltransferase; protein-nucleotide
complex; HET: IMP; 2.20A {Thermoanaerobacter
tengcongensis} SCOP: c.61.1.1 PDB: 1r3u_A*
Length = 205
Score = 25.6 bits (57), Expect = 8.0
Identities = 12/38 (31%), Positives = 16/38 (42%), Gaps = 8/38 (21%)
Query: 83 YRAFDIANHFVESV-----YDYSYKHFPH-YTVKRENY 114
Y F I + FV V Y Y++ P +K E Y
Sbjct: 169 YCGFKIPDKFV--VGYGLDYAEKYRNLPFIGVLKPELY 204
>2wa7_A Filamin-B; disease mutation, skeletal dysplasia, structural
protein, actin-crosslinking, myogenesis, cytoskeleton;
1.85A {Homo sapiens} PDB: 2wa5_A 2wa6_A 3fer_A
Length = 245
Score = 25.7 bits (56), Expect = 9.8
Identities = 16/127 (12%), Positives = 33/127 (25%), Gaps = 7/127 (5%)
Query: 15 WLKKHLLKIKSPVTFCHNDLQEGNILYR--E--SPNNNNNNNNNNNNNNVNNSSNNNNID 70
W +HL + + DL +G L E S + N +
Sbjct: 28 WCNEHLKCVNKRIGNLQTDLSDGLRLIALLEVLSQKRMYRKYHQRPTFRQMQLENVSVAL 87
Query: 71 LVVIDFEYCSYNYRAFDIANHFVESVYDYS---YKHFPHYTVKRENYPSYSLRKSFVETY 127
+ + + I + ++ + H+ E+ +K +
Sbjct: 88 EFLDRESIKLVSIDSKAIVDGNLKLILGLVWTLILHYSISMPVWEDEGDDDAKKQTPKQR 147
Query: 128 LSRMNQE 134
L Q
Sbjct: 148 LLGWIQN 154
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.315 0.131 0.403
Gapped
Lambda K H
0.267 0.0544 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 2,668,682
Number of extensions: 145661
Number of successful extensions: 718
Number of sequences better than 10.0: 1
Number of HSP's gapped: 648
Number of HSP's successfully gapped: 93
Length of query: 174
Length of database: 6,701,793
Length adjustment: 87
Effective length of query: 87
Effective length of database: 4,272,666
Effective search space: 371721942
Effective search space used: 371721942
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 54 (25.0 bits)