RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy15664
         (174 letters)



>d1nw1a_ d.144.1.8 (A:) Choline kinase {Caenorhabditis elegans
           [TaxId: 6239]}
          Length = 395

 Score =  149 bits (377), Expect = 1e-44
 Identities = 67/182 (36%), Positives = 94/182 (51%), Gaps = 9/182 (4%)

Query: 2   KKILSKDLNTEADWLKKHLLKIKSPVTFCHNDLQEGNILYRESPNNN----NNNNNNNNN 57
             +   DL  E ++L+ H+   KSPVTFCHNDLQEGNIL  ++ + N    + ++     
Sbjct: 193 SSVNCLDLARELEFLRAHISLSKSPVTFCHNDLQEGNILLPKASSGNIRMPSLSDETQAL 252

Query: 58  NNVNNSSNNNNIDLVVIDFEYCSYNYRAFDIANHFVESVYDYSYKHFPHYTVKRENYPSY 117
            N  ++ N  +  LV+IDFEY SYNYRAFD ANHF+E   DY     P Y ++ EN+P  
Sbjct: 253 GNSLSAFNPADPRLVLIDFEYASYNYRAFDFANHFIEWTIDYDIDEAPFYKIQTENFPEN 312

Query: 118 SLRKSFVETYLSRMNQEDSTP-----ESVLEEVKHFTLASHFFWALWSFVHDDTSEISFG 172
                F   YL               E +++E   F   SHFFW +W  +  + S + FG
Sbjct: 313 DQMLEFFLNYLREQGNTRENELYKKSEDLVQETLPFVPVSHFFWGVWGLLQVELSPVGFG 372

Query: 173 YW 174
           + 
Sbjct: 373 FA 374


>d2pula1 d.144.1.6 (A:5-396) Methylthioribose kinase MtnK {Bacillus
           subtilis [TaxId: 1423]}
          Length = 392

 Score = 42.1 bits (98), Expect = 1e-05
 Identities = 30/151 (19%), Positives = 47/151 (31%), Gaps = 33/151 (21%)

Query: 7   KDLNTEADWLKKHLLKIKSPVTFCHNDLQEGNILYRESPNNNNNNNNNNNNNNVNNSSNN 66
             +  EA  LKK  L   S  T  H DL  G+I   E                       
Sbjct: 205 DSVKIEAAKLKKSFLT--SAETLIHGDLHTGSIFASEH---------------------- 240

Query: 67  NNIDLVVIDFEYCSYNYRAFD----IANHFVESVYDYSYKHFPHYTVKRENYPSYS--LR 120
              +  VID E+  Y    FD    IAN F+ ++        P Y    + + ++     
Sbjct: 241 ---ETKVIDPEFAFYGPIGFDVGQFIANLFLNALSRDGADREPLYEHVNQVWETFEETFS 297

Query: 121 KSFVETYLSRMNQEDSTPESVLEEVKHFTLA 151
           +++ +  L      D      L  +    + 
Sbjct: 298 EAWQKDSLDVYANIDGYLTDTLSHIFEEAIG 328


>d1nd4a_ d.144.1.6 (A:) Aminoglycoside 3'-phosphotransferase IIa
           (Kanamycin kinase) {Bacteria (Klebsiella pneumoniae)
           [TaxId: 573]}
          Length = 255

 Score = 34.2 bits (77), Expect = 0.005
 Identities = 13/93 (13%), Positives = 18/93 (19%), Gaps = 25/93 (26%)

Query: 8   DLNTEADWLKKHLLKIKSPVTFCHNDLQEGNILYRESPNNNNNNNNNNNNNNVNNSSNNN 67
                   LK  +      +   H D    NI+                          N
Sbjct: 157 APAELFARLKARMPD-GEDLVVTHGDACLPNIMV------------------------EN 191

Query: 68  NIDLVVIDFEYCSYNYRAFDIANHFVESVYDYS 100
                 ID        R  DIA    +   +  
Sbjct: 192 GRFSGFIDCGRLGVADRYQDIALATRDIAEELG 224


>d1j7la_ d.144.1.6 (A:) Type IIIa 3',5"-aminoglycoside
           phosphotransferase {Enterococcus faecalis [TaxId: 1351]}
          Length = 263

 Score = 27.7 bits (60), Expect = 0.83
 Identities = 15/87 (17%), Positives = 23/87 (26%), Gaps = 26/87 (29%)

Query: 14  DWLKKHLLKIKSPVTFCHNDLQEGNILYRESPNNNNNNNNNNNNNNVNNSSNNNNIDLVV 73
           D+LK    +    + F H DL + NI  ++                              
Sbjct: 172 DFLKTEKPE--EELVFSHGDLGDSNIFVKDGKV------------------------SGF 205

Query: 74  IDFEYCSYNYRAFDIANHFVESVYDYS 100
           ID        + +DIA        D  
Sbjct: 206 IDLGRSGRADKWYDIAFCVRSIREDIG 232


>d3bona1 d.92.1.7 (A:3-419) Botulinum neurotoxin {Clostridium
          botulinum, serotype A [TaxId: 1491]}
          Length = 417

 Score = 26.3 bits (58), Expect = 2.3
 Identities = 9/36 (25%), Positives = 13/36 (36%)

Query: 55 NNNNNVNNSSNNNNIDLVVIDFEYCSYNYRAFDIAN 90
          N   N  +  N  +I  + I         +AF I N
Sbjct: 3  NKQFNYKDPVNGVDIAYIKIPNVGQMQPVKAFKIHN 38


>d1zyla1 d.144.1.6 (A:4-328) RdoA {Escherichia coli [TaxId: 562]}
          Length = 325

 Score = 25.1 bits (54), Expect = 5.7
 Identities = 12/92 (13%), Positives = 22/92 (23%), Gaps = 27/92 (29%)

Query: 1   MKKILSKDLNTEADWLKKHLLKIKSPVTFCHNDLQEGNILYRESPNNNNNNNNNNNNNNV 60
           +K    K  +     +     +    V   H D   GNIL+R+                 
Sbjct: 167 LKAAFLKATDELIAAVT-AHWREDFTVLRLHGDCHAGNILWRD----------------- 208

Query: 61  NNSSNNNNIDLVVIDFEYCSYNYRAFDIANHF 92
                      + +D +         D+    
Sbjct: 209 ---------GPMFVDLDDARNGPAVQDLWMLL 231


>d2nxya1 d.172.1.1 (A:83-491) gp120 core {Human immunodeficiency
           virus type 1 [TaxId: 11676]}
          Length = 316

 Score = 24.7 bits (54), Expect = 6.8
 Identities = 6/25 (24%), Positives = 12/25 (48%)

Query: 47  NNNNNNNNNNNNNVNNSSNNNNIDL 71
           N+   N+  +    NN+  ++ I L
Sbjct: 217 NSTWFNSTWSTEGSNNTEGSDTITL 241


>g1d4m.1 b.121.4.1 (4:,2:) Human enterovirus B coat proteins
          {Human coxsackievirus A9 [TaxId: 12067]}
          Length = 320

 Score = 24.4 bits (53), Expect = 8.5
 Identities = 2/25 (8%), Positives = 11/25 (44%)

Query: 42 RESPNNNNNNNNNNNNNNVNNSSNN 66
           +    +  + +   N+ ++ ++ N
Sbjct: 6  TQKTGAHETSLSAAGNSIIHYTNIN 30


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.315    0.131    0.403 

Gapped
Lambda     K      H
   0.267   0.0635    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 684,535
Number of extensions: 31096
Number of successful extensions: 217
Number of sequences better than 10.0: 1
Number of HSP's gapped: 177
Number of HSP's successfully gapped: 55
Length of query: 174
Length of database: 2,407,596
Length adjustment: 79
Effective length of query: 95
Effective length of database: 1,322,926
Effective search space: 125677970
Effective search space used: 125677970
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 50 (23.2 bits)