BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy15665
(107 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3LQ3|A Chain A, Crystal Structure Of Human Choline Kinase Beta In Complex
With Phosphorylated Hemicholinium-3 And Adenosine
Nucleotide
Length = 401
Score = 86.3 bits (212), Expect = 4e-18, Method: Composition-based stats.
Identities = 42/97 (43%), Positives = 53/97 (54%), Gaps = 18/97 (18%)
Query: 1 KHLLKIKSPVTFCHNDLQEGNILYRESPXXXXXXXXXXXXXXXXXXXXXIDLVVIDFEYC 60
K L SPV FCHND+QEGNIL P L+++DFEY
Sbjct: 233 KLLESTPSPVVFCHNDIQEGNILLLSEPENAD------------------SLMLVDFEYS 274
Query: 61 SYNYRAFDIANHFVESVYDYSYKHFPHYTVKRENYPS 97
SYNYR FDI NHF E VYDY+++ +P Y + +YP+
Sbjct: 275 SYNYRGFDIGNHFCEWVYDYTHEEWPFYKARPTDYPT 311
>pdb|3FEG|A Chain A, Crystal Structure Of Human Choline Kinase Beta In Complex
With Phosphorylated Hemicholinium-3 And Adenosine
Nucleotide
Length = 379
Score = 84.3 bits (207), Expect = 1e-17, Method: Composition-based stats.
Identities = 42/97 (43%), Positives = 53/97 (54%), Gaps = 18/97 (18%)
Query: 1 KHLLKIKSPVTFCHNDLQEGNILYRESPXXXXXXXXXXXXXXXXXXXXXIDLVVIDFEYC 60
K L SPV FCHND+QEGNIL P L+++DFEY
Sbjct: 211 KLLESTPSPVVFCHNDIQEGNILLLSEPENAD------------------SLMLVDFEYS 252
Query: 61 SYNYRAFDIANHFVESVYDYSYKHFPHYTVKRENYPS 97
SYNYR FDI NHF E VYDY+++ +P Y + +YP+
Sbjct: 253 SYNYRGFDIGNHFCEWVYDYTHEEWPFYKARPTDYPT 289
>pdb|1NW1|A Chain A, Crystal Structure Of Choline Kinase
pdb|1NW1|B Chain B, Crystal Structure Of Choline Kinase
Length = 429
Score = 84.3 bits (207), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 45/101 (44%), Positives = 53/101 (52%), Gaps = 6/101 (5%)
Query: 2 HLLKIKSPVTFCHNDLQEGNILYRESPXXXXXXXXXXXXXXXXXXXXXI------DLVVI 55
H+ KSPVTFCHNDLQEGNIL ++ LV+I
Sbjct: 241 HISLSKSPVTFCHNDLQEGNILLPKASSGNIRMPSLSDETQALGNSLSAFNPADPRLVLI 300
Query: 56 DFEYCSYNYRAFDIANHFVESVYDYSYKHFPHYTVKRENYP 96
DFEY SYNYRAFD ANHF+E DY P Y ++ EN+P
Sbjct: 301 DFEYASYNYRAFDFANHFIEWTIDYDIDEAPFYKIQTENFP 341
>pdb|2IG7|A Chain A, Crystal Structure Of Human Choline Kinase B
pdb|2IG7|B Chain B, Crystal Structure Of Human Choline Kinase B
Length = 401
Score = 82.8 bits (203), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 42/97 (43%), Positives = 52/97 (53%), Gaps = 18/97 (18%)
Query: 1 KHLLKIKSPVTFCHNDLQEGNILYRESPXXXXXXXXXXXXXXXXXXXXXIDLVVIDFEYC 60
K L SPV FCHND+QEGNIL P L ++DFEY
Sbjct: 233 KLLESTPSPVVFCHNDIQEGNILLLSEPENAD------------------SLXLVDFEYS 274
Query: 61 SYNYRAFDIANHFVESVYDYSYKHFPHYTVKRENYPS 97
SYNYR FDI NHF E VYDY+++ +P Y + +YP+
Sbjct: 275 SYNYRGFDIGNHFCEWVYDYTHEEWPFYKARPTDYPT 311
>pdb|2I7Q|A Chain A, Crystal Structure Of Human Choline Kinase A
Length = 402
Score = 82.4 bits (202), Expect = 6e-17, Method: Composition-based stats.
Identities = 41/90 (45%), Positives = 48/90 (53%), Gaps = 16/90 (17%)
Query: 8 SPVTFCHNDLQEGNILYRESPXXXXXXXXXXXXXXXXXXXXXIDLVVIDFEYCSYNYRAF 67
SPV FCHND QEGNIL E L++IDFEY SYNYR F
Sbjct: 243 SPVVFCHNDCQEGNILLLEGRENSEKQ----------------KLMLIDFEYSSYNYRGF 286
Query: 68 DIANHFVESVYDYSYKHFPHYTVKRENYPS 97
DI NHF E +YDYSY+ +P + YP+
Sbjct: 287 DIGNHFCEWMYDYSYEKYPFFRANIRKYPT 316
>pdb|3F2R|A Chain A, Crystal Structure Of Human Choline Kinase Alpha In Complex
With Hemicholinium-3
pdb|3F2R|B Chain B, Crystal Structure Of Human Choline Kinase Alpha In Complex
With Hemicholinium-3
pdb|3G15|A Chain A, Crystal Structure Of Human Choline Kinase Alpha In Complex
With Hemicholinium-3 And Adp
pdb|3G15|B Chain B, Crystal Structure Of Human Choline Kinase Alpha In Complex
With Hemicholinium-3 And Adp
Length = 401
Score = 82.4 bits (202), Expect = 6e-17, Method: Composition-based stats.
Identities = 41/90 (45%), Positives = 48/90 (53%), Gaps = 16/90 (17%)
Query: 8 SPVTFCHNDLQEGNILYRESPXXXXXXXXXXXXXXXXXXXXXIDLVVIDFEYCSYNYRAF 67
SPV FCHND QEGNIL E L++IDFEY SYNYR F
Sbjct: 242 SPVVFCHNDCQEGNILLLEGRENSEKQ----------------KLMLIDFEYSSYNYRGF 285
Query: 68 DIANHFVESVYDYSYKHFPHYTVKRENYPS 97
DI NHF E +YDYSY+ +P + YP+
Sbjct: 286 DIGNHFCEWMYDYSYEKYPFFRANIRKYPT 315
>pdb|3ZM9|A Chain A, The Mechanism Of Allosteric Coupling In Choline Kinase A1
Revealed By A Rationally Designed Inhibitor
pdb|3ZM9|B Chain B, The Mechanism Of Allosteric Coupling In Choline Kinase A1
Revealed By A Rationally Designed Inhibitor
Length = 383
Score = 81.6 bits (200), Expect = 1e-16, Method: Composition-based stats.
Identities = 41/90 (45%), Positives = 48/90 (53%), Gaps = 16/90 (17%)
Query: 8 SPVTFCHNDLQEGNILYRESPXXXXXXXXXXXXXXXXXXXXXIDLVVIDFEYCSYNYRAF 67
SPV FCHND QEGNIL E L++IDFEY SYNYR F
Sbjct: 224 SPVVFCHNDCQEGNILLLEGRENSEKQ----------------KLMLIDFEYSSYNYRGF 267
Query: 68 DIANHFVESVYDYSYKHFPHYTVKRENYPS 97
DI NHF E +YDYSY+ +P + YP+
Sbjct: 268 DIGNHFCEWMYDYSYEKYPFFRANIRKYPT 297
>pdb|2CKO|A Chain A, Crystal Structure Of Human Choline Kinase Alpha 2
pdb|2CKO|B Chain B, Crystal Structure Of Human Choline Kinase Alpha 2
pdb|2CKP|A Chain A, Crystal Structure Of Human Choline Kinase Alpha-2 In
Complex With Adp
pdb|2CKP|B Chain B, Crystal Structure Of Human Choline Kinase Alpha-2 In
Complex With Adp
pdb|2CKQ|A Chain A, Crystal Structure Of Human Choline Kinase Alpha 2 In
Complex With Phosphocholine
pdb|2CKQ|B Chain B, Crystal Structure Of Human Choline Kinase Alpha 2 In
Complex With Phosphocholine
Length = 390
Score = 81.3 bits (199), Expect = 1e-16, Method: Composition-based stats.
Identities = 41/90 (45%), Positives = 48/90 (53%), Gaps = 16/90 (17%)
Query: 8 SPVTFCHNDLQEGNILYRESPXXXXXXXXXXXXXXXXXXXXXIDLVVIDFEYCSYNYRAF 67
SPV FCHND QEGNIL E L++IDFEY SYNYR F
Sbjct: 231 SPVVFCHNDCQEGNILLLEGRENSEKQ----------------KLMLIDFEYSSYNYRGF 274
Query: 68 DIANHFVESVYDYSYKHFPHYTVKRENYPS 97
DI NHF E +YDYSY+ +P + YP+
Sbjct: 275 DIGNHFCEWMYDYSYEKYPFFRANIRKYPT 304
>pdb|3FI8|A Chain A, Crystal Structure Of Choline Kinase From Plasmodium
Falciparum, Pf14_0020
Length = 362
Score = 65.1 bits (157), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 35/96 (36%), Positives = 48/96 (50%), Gaps = 23/96 (23%)
Query: 6 IKSPVTFCHNDLQEGNILYRESPXXXXXXXXXXXXXXXXXXXXXIDLVVIDFEYCSYNYR 65
I + + FCHNDLQE NI+ L +IDFEY YN+
Sbjct: 200 IANDIVFCHNDLQENNIMNTNKC-----------------------LRLIDFEYSGYNFL 236
Query: 66 AFDIANHFVESVYDYSYKHFPHYTVKRENYPSYSLR 101
+ DIAN F+E+ DYSY +P + + ++NY SY R
Sbjct: 237 SADIANFFIETTIDYSYNAYPFFIINKKNYISYESR 272
>pdb|3C5I|A Chain A, Crystal Structure Of Plasmodium Knowlesi Choline Kinase,
Pkh_134520
pdb|3C5I|B Chain B, Crystal Structure Of Plasmodium Knowlesi Choline Kinase,
Pkh_134520
pdb|3C5I|C Chain C, Crystal Structure Of Plasmodium Knowlesi Choline Kinase,
Pkh_134520
pdb|3C5I|D Chain D, Crystal Structure Of Plasmodium Knowlesi Choline Kinase,
Pkh_134520
Length = 369
Score = 57.8 bits (138), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 32/96 (33%), Positives = 46/96 (47%), Gaps = 23/96 (23%)
Query: 6 IKSPVTFCHNDLQEGNILYRESPXXXXXXXXXXXXXXXXXXXXXIDLVVIDFEYCSYNYR 65
+ + + FCHNDLQE NI+ L +IDFEY +N+
Sbjct: 208 LANTIVFCHNDLQENNIINTNKC-----------------------LRLIDFEYSGFNFL 244
Query: 66 AFDIANHFVESVYDYSYKHFPHYTVKRENYPSYSLR 101
A DIAN F+E+ DYS +P + + ++ Y SY R
Sbjct: 245 ATDIANFFIETSIDYSVSSYPFFEIDKKKYISYENR 280
>pdb|3MES|A Chain A, Crystal Structure Of Choline Kinase From Cryptosporidium
Parvum Iowa Ii, Cgd3_2030
pdb|3MES|B Chain B, Crystal Structure Of Choline Kinase From Cryptosporidium
Parvum Iowa Ii, Cgd3_2030
Length = 424
Score = 55.5 bits (132), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 34/101 (33%), Positives = 51/101 (50%), Gaps = 26/101 (25%)
Query: 4 LKIKSP---VTFCHNDLQEGNILYRESPXXXXXXXXXXXXXXXXXXXXXIDLVVIDFEYC 60
LK+ SP + F HNDLQE N+L ++ ++ +ID+EY
Sbjct: 253 LKLYSPAFSLVFAHNDLQENNLLQTQN-----------------------NIRMIDYEYS 289
Query: 61 SYNYRAFDIANHFVESVYDYSYKHFPHYTVKRENYPSYSLR 101
+ N+ DIAN+F E +YDY + P++ K E+YP LR
Sbjct: 290 AINFAGADIANYFCEYIYDYCSEKQPYFKFKYEDYPCEELR 330
>pdb|2QG7|A Chain A, Plasmodium Vivax Ethanolamine Kinase Pv091845
pdb|2QG7|B Chain B, Plasmodium Vivax Ethanolamine Kinase Pv091845
pdb|2QG7|D Chain D, Plasmodium Vivax Ethanolamine Kinase Pv091845
pdb|2QG7|E Chain E, Plasmodium Vivax Ethanolamine Kinase Pv091845
Length = 458
Score = 30.0 bits (66), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 14/21 (66%), Positives = 15/21 (71%)
Query: 55 IDFEYCSYNYRAFDIANHFVE 75
IDFEY RA+DIANHF E
Sbjct: 350 IDFEYSCPMERAYDIANHFNE 370
>pdb|2Z63|A Chain A, Crystal Structure Of The Tv8 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
Length = 570
Score = 25.8 bits (55), Expect = 6.1, Method: Composition-based stats.
Identities = 14/53 (26%), Positives = 25/53 (47%), Gaps = 4/53 (7%)
Query: 54 VIDFEYCSYNYRAFDIANHFVESVYDYSY----KHFPHYTVKRENYPSYSLRN 102
+ID C N +F + + +E V D+SY +H K +P+ L++
Sbjct: 274 IIDLFNCLTNVSSFSLVSVTIERVKDFSYNFGWQHLELVNCKFGQFPTLKLKS 326
>pdb|4G8A|A Chain A, Crystal Structure Of Human Tlr4 Polymorphic Variant D299g
And T399i In Complex With Md-2 And Lps
pdb|4G8A|B Chain B, Crystal Structure Of Human Tlr4 Polymorphic Variant D299g
And T399i In Complex With Md-2 And Lps
Length = 635
Score = 25.8 bits (55), Expect = 7.0, Method: Composition-based stats.
Identities = 14/53 (26%), Positives = 25/53 (47%), Gaps = 4/53 (7%)
Query: 54 VIDFEYCSYNYRAFDIANHFVESVYDYSY----KHFPHYTVKRENYPSYSLRN 102
+ID C N +F + + +E V D+SY +H K +P+ L++
Sbjct: 298 IIDLFNCLTNVSSFSLVSVTIERVKDFSYNFGWQHLELVNCKFGQFPTLKLKS 350
>pdb|3FXI|A Chain A, Crystal Structure Of The Human Tlr4-Human Md-2-E.Coli Lps
Ra Complex
pdb|3FXI|B Chain B, Crystal Structure Of The Human Tlr4-Human Md-2-E.Coli Lps
Ra Complex
Length = 605
Score = 25.8 bits (55), Expect = 7.0, Method: Composition-based stats.
Identities = 14/53 (26%), Positives = 25/53 (47%), Gaps = 4/53 (7%)
Query: 54 VIDFEYCSYNYRAFDIANHFVESVYDYSY----KHFPHYTVKRENYPSYSLRN 102
+ID C N +F + + +E V D+SY +H K +P+ L++
Sbjct: 274 IIDLFNCLTNVSSFSLVSVTIERVKDFSYNFGWQHLELVNCKFGQFPTLKLKS 326
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.323 0.139 0.443
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,821,023
Number of Sequences: 62578
Number of extensions: 80125
Number of successful extensions: 165
Number of sequences better than 100.0: 16
Number of HSP's better than 100.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 140
Number of HSP's gapped (non-prelim): 20
length of query: 107
length of database: 14,973,337
effective HSP length: 72
effective length of query: 35
effective length of database: 10,467,721
effective search space: 366370235
effective search space used: 366370235
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 45 (21.9 bits)