RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy15665
(107 letters)
>gnl|CDD|240177 cd05156, ChoK_euk, Choline Kinase (ChoK) in eukaryotes. The ChoK
subfamily is part of a larger superfamily that includes
the catalytic domains of other kinases, such as the
typical serine/threonine/tyrosine protein kinases (PKs),
RIO kinases, actin-fragmin kinase (AFK), and
phosphoinositide 3-kinase (PI3K). It is composed of
bacterial and eukaryotic choline kinases, as well as
eukaryotic ethanolamine kinase. ChoK catalyzes the
transfer of the gamma-phosphoryl group from ATP (or CTP)
to its substrate, choline, producing phosphorylcholine
(PCho), a precursor to the biosynthesis of two major
membrane phospholipids, phosphatidylcholine (PC) and
sphingomyelin (SM). Although choline is the preferred
substrate, ChoK also shows substantial activity towards
ethanolamine and its N-methylated derivatives. ChoK
plays an important role in cell signaling pathways and
the regulation of cell growth. Along with PCho, it is
involved in malignant transformation through Ras
oncogenes in various human cancers such as breast, lung,
colon, prostate, neuroblastoma, and hepatic lymphoma. In
mammalian cells, there are three ChoK isoforms (A-1,
A-2, and B) which are active in homo or heterodimeric
forms.
Length = 302
Score = 108 bits (271), Expect = 4e-30
Identities = 42/97 (43%), Positives = 50/97 (51%), Gaps = 18/97 (18%)
Query: 5 KIKSPVTFCHNDLQEGNILYRESPNNNNSSNNNNNNNNNNNNNNNIDLVVIDFEYCSYNY 64
+ SPV FCHNDLQEGNIL + LV+IDFEY SYNY
Sbjct: 174 ESGSPVVFCHNDLQEGNILLLNPSSETK------------------KLVLIDFEYASYNY 215
Query: 65 RAFDIANHFVESVYDYSYKHFPHYTVKRENYPSYSLR 101
R FDIANHF E +YDY P + + + YP+ R
Sbjct: 216 RGFDIANHFCEWMYDYHDPEPPFFKIHEDKYPTEEQR 252
>gnl|CDD|216617 pfam01633, Choline_kinase, Choline/ethanolamine kinase. Choline
kinase catalyzes the committed step in the synthesis of
phosphatidylcholine by the CDP-choline pathway. This
alignment covers the protein kinase portion of the
protein. The divergence of this family makes it very
difficult to create a model that specifically predicts
choline/ethanolamine kinases only. However if [add Pfam
ID here for Choline_kinase_C] is also present then it is
definitely a member of this family.
Length = 206
Score = 85.4 bits (212), Expect = 4e-22
Identities = 41/98 (41%), Positives = 49/98 (50%), Gaps = 23/98 (23%)
Query: 1 KHLLKIKSPVTFCHNDLQEGNILYRESPNNNNSSNNNNNNNNNNNNNNNIDLVVIDFEYC 60
K L ++SP+ FCHNDLQ GNIL +N+ LV+IDFEY
Sbjct: 130 KLLENLESPIVFCHNDLQPGNILL---------------------DNSTNRLVLIDFEYA 168
Query: 61 SYNYRAFDIANHFVESVYDYSYKHFPHYTVKRENYPSY 98
SYNYRAFDIANHF E DY + YP+
Sbjct: 169 SYNYRAFDIANHFCEWAGDYHEPEP--FKCDYSLYPTE 204
>gnl|CDD|240350 PTZ00296, PTZ00296, choline kinase; Provisional.
Length = 442
Score = 69.9 bits (171), Expect = 2e-15
Identities = 36/92 (39%), Positives = 47/92 (51%), Gaps = 23/92 (25%)
Query: 10 VTFCHNDLQEGNILYRESPNNNNSSNNNNNNNNNNNNNNNIDLVVIDFEYCSYNYRAFDI 69
+ FCHNDLQE NI+ N N L +IDFEY YN+ A DI
Sbjct: 284 IVFCHNDLQENNII-----------------------NTNKCLRLIDFEYSGYNFLATDI 320
Query: 70 ANHFVESVYDYSYKHFPHYTVKRENYPSYSLR 101
AN F+E+ DYS H+P + + ++ Y SY R
Sbjct: 321 ANFFIETTIDYSVSHYPFFAIDKKKYISYENR 352
>gnl|CDD|240178 cd05157, ETNK_euk, Ethanolamine kinase (ETNK) in eukaryotes. ETNK
is part of a larger superfamily that includes the
catalytic domains of other kinases, such as the typical
serine/threonine/tyrosine protein kinases (PKs), RIO
kinases, actin-fragmin kinase (AFK), and
phosphoinositide 3-kinase (PI3K). ETNK catalyzes the
transfer of the gamma-phosphoryl group from CTP to
ethanolamine (Etn), the first step in the CDP-Etn
pathway for the formation of the major phospholipid,
phosphatidylethanolamine (PtdEtn). Unlike ChoK, ETNK
shows specific activity for its substrate, and displays
negligible activity towards N-methylated derivatives of
Etn. The Drosophila ETNK is implicated in development
and neuronal function. Mammals contain two ETNK
proteins, ETNK1 and ETNK2. ETNK1 selectively increases
Etn uptake and phosphorylation, as well as PtdEtn
synthesis. ETNK2 is found primarily in the liver and
reproductive tissues. It plays a critical role in
regulating placental hemostasis to support late
embryonic development. It may also have a role in
testicular maturation.
Length = 235
Score = 67.7 bits (166), Expect = 4e-15
Identities = 32/75 (42%), Positives = 39/75 (52%), Gaps = 21/75 (28%)
Query: 1 KHLLKIKSPVTFCHNDLQEGNILYRESPNNNNSSNNNNNNNNNNNNNNNIDLVVIDFEYC 60
+ L + SP+ FCHNDL GNI+Y E N+ + ID+EY
Sbjct: 161 ELLSALNSPIVFCHNDLLSGNIIYNEEKNS---------------------VKFIDYEYA 199
Query: 61 SYNYRAFDIANHFVE 75
YNYRAFDIANHF E
Sbjct: 200 GYNYRAFDIANHFNE 214
>gnl|CDD|177880 PLN02236, PLN02236, choline kinase.
Length = 344
Score = 65.5 bits (160), Expect = 6e-14
Identities = 34/93 (36%), Positives = 41/93 (44%), Gaps = 29/93 (31%)
Query: 12 FCHNDLQEGNILYRESPNNNNSSNNNNNNNNNNNNNNNIDLVVIDFEYCSYNYRAFDIAN 71
FCHNDLQ GNI+ E + +ID+EY SYN A+DIAN
Sbjct: 202 FCHNDLQYGNIMIDEETRA---------------------ITIIDYEYASYNPVAYDIAN 240
Query: 72 HFVESVYDYSYKHFPH---YTVKRENYPSYSLR 101
HF E DY + PH Y+ YP R
Sbjct: 241 HFCEMAADY-HSETPHILDYS----KYPGEEER 268
>gnl|CDD|215231 PLN02421, PLN02421, phosphotransferase, alcohol group as
acceptor/kinase.
Length = 330
Score = 59.4 bits (144), Expect = 8e-12
Identities = 30/82 (36%), Positives = 39/82 (47%), Gaps = 22/82 (26%)
Query: 6 IKSPVTFCHNDLQEGNILYRESPNNNNSSNNNNNNNNNNNNNNNIDLVVIDFEYCSYNYR 65
+K+PV F HNDL GN++ N + L IDFEY SY+YR
Sbjct: 178 LKAPVVFAHNDLLSGNLML---------------------NEDEGKLYFIDFEYGSYSYR 216
Query: 66 AFDIANHFVESV-YDYSYKHFP 86
+DI NHF E +D Y +P
Sbjct: 217 GYDIGNHFNEYAGFDCDYSLYP 238
>gnl|CDD|240172 cd05151, ChoK, Choline Kinase (ChoK). The ChoK subfamily is part of
a larger superfamily that includes the catalytic domains
of other kinases, such as the typical
serine/threonine/tyrosine protein kinases (PKs), RIO
kinases, actin-fragmin kinase (AFK), and
phosphoinositide 3-kinase (PI3K). It is composed of
bacterial and eukaryotic choline kinases, as well as
eukaryotic ethanolamine kinase. ChoK catalyzes the
transfer of the gamma-phosphoryl group from ATP (or CTP)
to its substrate, choline, producing phosphorylcholine
(PCho), a precursor to the biosynthesis of two major
membrane phospholipids, phosphatidylcholine (PC), and
sphingomyelin (SM). Although choline is the preferred
substrate, ChoK also shows substantial activity towards
ethanolamine and its N-methylated derivatives. Bacterial
ChoK is also referred to as licA protein. ETNK catalyzes
the transfer of the gamma-phosphoryl group from CTP to
ethanolamine (Etn), the first step in the CDP-Etn
pathway for the formation of the major phospholipid,
phosphatidylethanolamine (PtdEtn). Unlike ChoK, ETNK
shows specific activity for its substrate and displays
negligible activity towards N-methylated derivatives of
Etn. ChoK plays an important role in cell signaling
pathways and the regulation of cell growth.
Length = 170
Score = 53.0 bits (128), Expect = 5e-10
Identities = 20/74 (27%), Positives = 27/74 (36%), Gaps = 23/74 (31%)
Query: 9 PVTFCHNDLQEGNILYRESPNNNNSSNNNNNNNNNNNNNNNIDLVVIDFEYCSYNYRAFD 68
+ CHNDL GN L ++ + L ID+EY N FD
Sbjct: 106 DLVPCHNDLLPGNFLL---------------------DDGRLWL--IDWEYAGMNDPLFD 142
Query: 69 IANHFVESVYDYSY 82
+AN F E+
Sbjct: 143 LANFFSEAKLSEDQ 156
>gnl|CDD|240159 cd05120, APH_ChoK_like, Aminoglycoside 3'-phosphotransferase (APH)
and Choline Kinase (ChoK) family. The APH/ChoK family is
part of a larger superfamily that includes the catalytic
domains of other kinases, such as the typical
serine/threonine/tyrosine protein kinases (PKs), RIO
kinases, actin-fragmin kinase (AFK), and
phosphoinositide 3-kinase (PI3K). The family is composed
of APH, ChoK, ethanolamine kinase (ETNK), macrolide
2'-phosphotransferase (MPH2'), an unusual homoserine
kinase, and uncharacterized proteins with similarity to
the N-terminal domain of acyl-CoA dehydrogenase 10
(ACAD10). The members of this family catalyze the
transfer of the gamma-phosphoryl group from ATP (or CTP)
to small molecule substrates such as aminoglycosides,
macrolides, choline, ethanolamine, and homoserine.
Phosphorylation of the antibiotics, aminoglycosides and
macrolides, leads to their inactivation and to bacterial
antibiotic resistance. Phosphorylation of choline,
ethanolamine, and homoserine serves as precursors to the
synthesis of important biological compounds, such as the
major phospholipids, phosphatidylcholine and
phosphatidylethanolamine and the amino acids, threonine,
methionine, and isoleucine.
Length = 155
Score = 48.2 bits (115), Expect = 3e-08
Identities = 21/72 (29%), Positives = 28/72 (38%), Gaps = 23/72 (31%)
Query: 2 HLLKIKSPVTFCHNDLQEGNILYRESPNNNNSSNNNNNNNNNNNNNNNIDLVVIDFEYCS 61
L ++ V CH DL GNIL ++ I L +ID+EY
Sbjct: 101 KLHQLPLLV-LCHGDLHPGNILV---------------------DDGKI-LGIIDWEYAG 137
Query: 62 YNYRAFDIANHF 73
Y AFD+A
Sbjct: 138 YGPPAFDLAAAL 149
>gnl|CDD|223584 COG0510, ycfN, Thiamine kinase and related kinases [Coenzyme
transport and metabolism].
Length = 269
Score = 43.5 bits (103), Expect = 3e-06
Identities = 20/81 (24%), Positives = 32/81 (39%), Gaps = 23/81 (28%)
Query: 1 KHLLKIKSPV-TFCHNDLQEGNILYRESPNNNNSSNNNNNNNNNNNNNNNIDLVVIDFEY 59
+ L ++ CHNDL GN+L + L +ID+EY
Sbjct: 143 RALEEVPKDDLVPCHNDLNPGNLLL--TDKG--------------------GLFLIDWEY 180
Query: 60 CSYNYRAFDIANHFVESVYDY 80
N AFD+A E ++++
Sbjct: 181 AGLNDPAFDLAALLSEYIFNH 201
>gnl|CDD|216618 pfam01636, APH, Phosphotransferase enzyme family. This family
consists of bacterial antibiotic resistance proteins,
which confer resistance to various aminoglycosides they
include: aminoglycoside 3'-phosphotransferase or
kanamycin kinase / neomycin-kanamycin phosphotransferase
and streptomycin 3''-kinase or streptomycin
3''-phosphotransferase. The aminoglycoside
phosphotransferases inactivate aminoglycoside
antibiotics via phosphorylation. This family also
includes homoserine kinase. This family is related to
fructosamine kinase pfam03881.
Length = 238
Score = 41.8 bits (98), Expect = 1e-05
Identities = 15/66 (22%), Positives = 20/66 (30%), Gaps = 21/66 (31%)
Query: 8 SPVTFCHNDLQEGNILYRESPNNNNSSNNNNNNNNNNNNNNNIDLVVIDFEYCSYNYRAF 67
P+ H DL GN+L VIDFE A+
Sbjct: 163 LPLVLVHGDLHPGNLLVDP---------------------GGRVTGVIDFEDAGLGDPAY 201
Query: 68 DIANHF 73
D+A+
Sbjct: 202 DLASLL 207
>gnl|CDD|225213 COG2334, COG2334, Putative homoserine kinase type II (protein
kinase fold) [General function prediction only].
Length = 331
Score = 38.1 bits (89), Expect = 3e-04
Identities = 11/80 (13%), Positives = 20/80 (25%), Gaps = 26/80 (32%)
Query: 13 CHNDLQEGNILYRESPNNNNSSNNNNNNNNNNNNNNNIDLVVIDFEYCSYNYRAFDIANH 72
H DL N+L+ + + IDF+ Y + +D+A
Sbjct: 200 IHGDLHPDNVLFDDDTDV---------------------SGFIDFDDAGYGWFIYDLAI- 237
Query: 73 FVESVYDYSYKHFPHYTVKR 92
+
Sbjct: 238 ----ALNAWNGDEADPRAAI 253
>gnl|CDD|168775 PRK07034, PRK07034, hypothetical protein; Provisional.
Length = 536
Score = 35.1 bits (80), Expect = 0.003
Identities = 15/26 (57%), Positives = 19/26 (73%)
Query: 23 LYRESPNNNNSSNNNNNNNNNNNNNN 48
LY++ PN N+S N NNNN N +NNN
Sbjct: 82 LYQQQPNANDSYPNGNNNNPNGDNNN 107
Score = 26.7 bits (58), Expect = 2.7
Identities = 13/44 (29%), Positives = 21/44 (47%)
Query: 2 HLLKIKSPVTFCHNDLQEGNILYRESPNNNNSSNNNNNNNNNNN 45
++ + +P + N Y NNN + +NNN N +NNN
Sbjct: 71 NMARTSAPPVTLYQQQPNANDSYPNGNNNNPNGDNNNPNGSNNN 114
>gnl|CDD|240427 PTZ00470, PTZ00470, glycoside hydrolase family 47 protein;
Provisional.
Length = 522
Score = 33.5 bits (77), Expect = 0.011
Identities = 12/26 (46%), Positives = 18/26 (69%)
Query: 26 ESPNNNNSSNNNNNNNNNNNNNNNID 51
+ ++N +NNNNNNN N+NN N +
Sbjct: 11 HNNADDNYNNNNNNNNQINSNNPNNN 36
Score = 32.4 bits (74), Expect = 0.029
Identities = 15/36 (41%), Positives = 25/36 (69%)
Query: 14 HNDLQEGNILYRESPNNNNSSNNNNNNNNNNNNNNN 49
+ +L+E ++ + +N N++NNNNN N+NN NNN
Sbjct: 1 NVNLREHLSVHNNADDNYNNNNNNNNQINSNNPNNN 36
Score = 32.4 bits (74), Expect = 0.029
Identities = 17/58 (29%), Positives = 26/58 (44%), Gaps = 3/58 (5%)
Query: 29 NNNNSSNNNNNNNNNNNNNNNIDLVVIDFEYCSYNYRAFDIANH---FVESVYDYSYK 83
+NN+ +N NNNNNNNN N+ + S R + ++ VY + K
Sbjct: 10 VHNNADDNYNNNNNNNNQINSNNPNNNGNNQASKLPRGKKKQENPFNKIDEVYYQNEK 67
Score = 32.0 bits (73), Expect = 0.044
Identities = 11/25 (44%), Positives = 16/25 (64%)
Query: 26 ESPNNNNSSNNNNNNNNNNNNNNNI 50
+ + +N ++N NNNNNNNN I
Sbjct: 4 LREHLSVHNNADDNYNNNNNNNNQI 28
Score = 28.9 bits (65), Expect = 0.41
Identities = 13/36 (36%), Positives = 18/36 (50%)
Query: 14 HNDLQEGNILYRESPNNNNSSNNNNNNNNNNNNNNN 49
H + + NNNN+ N+NN NNN NN +
Sbjct: 7 HLSVHNNADDNYNNNNNNNNQINSNNPNNNGNNQAS 42
Score = 26.2 bits (58), Expect = 3.7
Identities = 9/22 (40%), Positives = 13/22 (59%)
Query: 29 NNNNSSNNNNNNNNNNNNNNNI 50
N + +NN ++N NNNNN
Sbjct: 3 NLREHLSVHNNADDNYNNNNNN 24
>gnl|CDD|173576 PTZ00384, PTZ00384, choline kinase; Provisional.
Length = 383
Score = 33.2 bits (76), Expect = 0.013
Identities = 25/91 (27%), Positives = 36/91 (39%), Gaps = 24/91 (26%)
Query: 6 IKSPVTFCHNDLQEGNILYRESPNNNNSSNNNNNNNNNNNNNNNIDLVVIDFEYCSYNYR 65
I + V FCHNDL NIL + N + IDF++ +NY
Sbjct: 223 ITNSVLFCHNDLFFTNIL-----------------------DFNQGIYFIDFDFAGFNYV 259
Query: 66 AFDIANHFVESVYDYSYKHFPHYTVKRENYP 96
++IAN FV+ Y P Y ++
Sbjct: 260 GWEIANFFVKLYIVYD-PPTPPYFNSDDSLA 289
>gnl|CDD|131952 TIGR02906, spore_CotS, spore coat protein, CotS family. Members of
this family include the spore coat proteins CotS and
YtaA from Bacillus subtilis and, from other
endospore-forming bacteria, homologs that are more
closely related to these two than to the spore coat
proteins YutH and YsxE. The CotS family is more broadly
distributed than YutH or YsxE, but still is not
universal among spore-formers [Cellular processes,
Sporulation and germination].
Length = 313
Score = 31.5 bits (72), Expect = 0.057
Identities = 15/60 (25%), Positives = 21/60 (35%), Gaps = 23/60 (38%)
Query: 12 FCHNDLQEGNILYRESPNNNNSSNNNNNNNNNNNNNNNIDLVVIDFEYCSYNYRAFDIAN 71
FCH D NIL +N + VIDF+YC+ + D+
Sbjct: 189 FCHQDYAYHNILL---------------------KDNEVY--VIDFDYCTIDLPVRDLRK 225
>gnl|CDD|219500 pfam07655, Secretin_N_2, Secretin N-terminal domain. This is a
short domain found in bacterial type II/III secretory
system proteins. The architecture of these proteins
suggest that this family may be functionally analogous
to pfam03958.
Length = 95
Score = 28.4 bits (64), Expect = 0.27
Identities = 5/23 (21%), Positives = 18/23 (78%)
Query: 27 SPNNNNSSNNNNNNNNNNNNNNN 49
N+++SS+N++N +++++++
Sbjct: 30 GSNSSSSSSNSSNGGSSSSSSSG 52
Score = 28.1 bits (63), Expect = 0.37
Identities = 6/24 (25%), Positives = 19/24 (79%)
Query: 27 SPNNNNSSNNNNNNNNNNNNNNNI 50
S + +NSS++++N++N +++++
Sbjct: 27 SSSGSNSSSSSSNSSNGGSSSSSS 50
Score = 27.3 bits (61), Expect = 0.83
Identities = 4/23 (17%), Positives = 19/23 (82%)
Query: 27 SPNNNNSSNNNNNNNNNNNNNNN 49
S +++ S+++++++N++N +++
Sbjct: 25 SVSSSGSNSSSSSSNSSNGGSSS 47
Score = 26.1 bits (58), Expect = 2.2
Identities = 5/23 (21%), Positives = 19/23 (82%)
Query: 27 SPNNNNSSNNNNNNNNNNNNNNN 49
S ++++SSN++N +++++++ +
Sbjct: 31 SNSSSSSSNSSNGGSSSSSSSGD 53
Score = 26.1 bits (58), Expect = 2.2
Identities = 5/23 (21%), Positives = 19/23 (82%)
Query: 27 SPNNNNSSNNNNNNNNNNNNNNN 49
S +++NSSN +++++++ ++++
Sbjct: 34 SSSSSNSSNGGSSSSSSSGDSSS 56
Score = 26.1 bits (58), Expect = 2.5
Identities = 3/23 (13%), Positives = 18/23 (78%)
Query: 27 SPNNNNSSNNNNNNNNNNNNNNN 49
S ++N+S+ +++++++ ++++
Sbjct: 35 SSSSNSSNGGSSSSSSSGDSSSG 57
Score = 25.0 bits (55), Expect = 5.4
Identities = 2/23 (8%), Positives = 19/23 (82%)
Query: 27 SPNNNNSSNNNNNNNNNNNNNNN 49
+ ++++S+++N +++++++ ++
Sbjct: 32 NSSSSSSNSSNGGSSSSSSSGDS 54
Score = 25.0 bits (55), Expect = 5.8
Identities = 3/23 (13%), Positives = 19/23 (82%)
Query: 27 SPNNNNSSNNNNNNNNNNNNNNN 49
S +++++S+N +++++++ +++
Sbjct: 33 SSSSSSNSSNGGSSSSSSSGDSS 55
Score = 24.6 bits (54), Expect = 7.7
Identities = 4/24 (16%), Positives = 17/24 (70%)
Query: 27 SPNNNNSSNNNNNNNNNNNNNNNI 50
S N++N +++++++ ++++ I
Sbjct: 37 SSNSSNGGSSSSSSSGDSSSGTRI 60
>gnl|CDD|225798 COG3259, FrhA, Coenzyme F420-reducing hydrogenase, alpha subunit
[Energy production and conversion].
Length = 441
Score = 29.3 bits (66), Expect = 0.30
Identities = 14/51 (27%), Positives = 18/51 (35%), Gaps = 2/51 (3%)
Query: 48 NNIDLVVIDFEYCSYNYRAFDIANHFVESVYDYSYKHFPHYTVKRENYPSY 98
I + + + ESVY YSY P+Y K YP Y
Sbjct: 221 PEPYDGSIRAYDDREKFDPDEYEDIIPESVYPYSYLKHPYY--KDLGYPDY 269
>gnl|CDD|191179 pfam05053, Menin, Menin. MEN1, the gene responsible for multiple
endocrine neoplasia type 1, is a tumour suppressor gene
that encodes a protein called Menin which may be an
atypical GTPase stimulated by nm23.
Length = 618
Score = 29.2 bits (65), Expect = 0.38
Identities = 15/23 (65%), Positives = 18/23 (78%)
Query: 26 ESPNNNNSSNNNNNNNNNNNNNN 48
ESPN +NNNN+N+NNNNNN
Sbjct: 496 ESPNPELPANNNNSNSNNNNNNG 518
Score = 25.7 bits (56), Expect = 6.8
Identities = 19/44 (43%), Positives = 24/44 (54%), Gaps = 10/44 (22%)
Query: 16 DLQEGN--ILYRES----PNNNNSSN----NNNNNNNNNNNNNN 49
+ +EG RES P+ S N NNNN+N+NNNNNN
Sbjct: 474 EAREGRRRGPRRESKSQEPSGGESPNPELPANNNNSNSNNNNNN 517
>gnl|CDD|240339 PTZ00265, PTZ00265, multidrug resistance protein (mdr1);
Provisional.
Length = 1466
Score = 28.8 bits (64), Expect = 0.47
Identities = 15/26 (57%), Positives = 21/26 (80%)
Query: 25 RESPNNNNSSNNNNNNNNNNNNNNNI 50
+++ NNN +N ++NNNNNNNNNN I
Sbjct: 672 KDNKENNNKNNKDDNNNNNNNNNNKI 697
Score = 28.1 bits (62), Expect = 1.1
Identities = 17/32 (53%), Positives = 22/32 (68%)
Query: 25 RESPNNNNSSNNNNNNNNNNNNNNNIDLVVID 56
+E+ N NN +NNNNNNNNNN NN +I+
Sbjct: 675 KENNNKNNKDDNNNNNNNNNNKINNAGSYIIE 706
Score = 28.1 bits (62), Expect = 1.1
Identities = 14/24 (58%), Positives = 17/24 (70%)
Query: 26 ESPNNNNSSNNNNNNNNNNNNNNN 49
E P +N NNN NN ++NNNNNN
Sbjct: 668 EDPTKDNKENNNKNNKDDNNNNNN 691
Score = 26.5 bits (58), Expect = 3.5
Identities = 13/29 (44%), Positives = 20/29 (68%)
Query: 21 NILYRESPNNNNSSNNNNNNNNNNNNNNN 49
+I+ + +N +NN NN ++NNNNNNN
Sbjct: 664 DIIGEDPTKDNKENNNKNNKDDNNNNNNN 692
>gnl|CDD|237171 PRK12678, PRK12678, transcription termination factor Rho;
Provisional.
Length = 672
Score = 28.3 bits (64), Expect = 0.66
Identities = 0/25 (0%), Positives = 4/25 (16%)
Query: 25 RESPNNNNSSNNNNNNNNNNNNNNN 49
+ + + +
Sbjct: 202 DRDRRDRREQGDRREERGRRDGGDR 226
Score = 27.9 bits (63), Expect = 0.93
Identities = 1/25 (4%), Positives = 6/25 (24%)
Query: 25 RESPNNNNSSNNNNNNNNNNNNNNN 49
R+ + + + +
Sbjct: 203 RDRRDRREQGDRREERGRRDGGDRR 227
>gnl|CDD|237555 PRK13914, PRK13914, invasion associated secreted endopeptidase;
Provisional.
Length = 481
Score = 28.2 bits (62), Expect = 0.79
Identities = 10/23 (43%), Positives = 16/23 (69%)
Query: 27 SPNNNNSSNNNNNNNNNNNNNNN 49
+P+ N ++N N+N N N+N N N
Sbjct: 332 TPSKNTNTNTNSNTNTNSNTNAN 354
Score = 28.2 bits (62), Expect = 0.85
Identities = 10/23 (43%), Positives = 12/23 (52%)
Query: 27 SPNNNNSSNNNNNNNNNNNNNNN 49
S N N + N N N N NN N +
Sbjct: 309 STNTNANKTNTNTNTNTNNTNTS 331
Score = 27.1 bits (59), Expect = 2.1
Identities = 10/21 (47%), Positives = 13/21 (61%)
Query: 29 NNNNSSNNNNNNNNNNNNNNN 49
NN N+S + N N N N+N N
Sbjct: 326 NNTNTSTPSKNTNTNTNSNTN 346
Score = 26.3 bits (57), Expect = 3.7
Identities = 9/21 (42%), Positives = 13/21 (61%)
Query: 29 NNNNSSNNNNNNNNNNNNNNN 49
N NS+ N N+N N N ++N
Sbjct: 339 TNTNSNTNTNSNTNANQGSSN 359
Score = 25.9 bits (56), Expect = 5.4
Identities = 8/23 (34%), Positives = 14/23 (60%)
Query: 27 SPNNNNSSNNNNNNNNNNNNNNN 49
+ N NN++ + + N N N N+N
Sbjct: 322 NTNTNNTNTSTPSKNTNTNTNSN 344
Score = 25.9 bits (56), Expect = 5.5
Identities = 12/24 (50%), Positives = 15/24 (62%), Gaps = 3/24 (12%)
Query: 29 NNNNSSNNNNNNNNNNN---NNNN 49
N N +SN N N+N N N +NNN
Sbjct: 338 NTNTNSNTNTNSNTNANQGSSNNN 361
Score = 25.9 bits (56), Expect = 5.5
Identities = 10/23 (43%), Positives = 14/23 (60%)
Query: 27 SPNNNNSSNNNNNNNNNNNNNNN 49
+P+ N ++N N N N N NN N
Sbjct: 307 APSTNTNANKTNTNTNTNTNNTN 329
Score = 25.5 bits (55), Expect = 6.9
Identities = 7/21 (33%), Positives = 12/21 (57%)
Query: 29 NNNNSSNNNNNNNNNNNNNNN 49
NN +++ + N N N N+N
Sbjct: 325 TNNTNTSTPSKNTNTNTNSNT 345
>gnl|CDD|234342 TIGR03752, conj_TIGR03752, integrating conjugative element protein,
PFL_4705 family. Members of this protein family are
found occasionally on plasmids such as the Pseudomonas
putida toluene catabolic TOL plasmid pWWO_p085. Usually,
however, they are found on the bacterial main chromosome
in regions flanked by markers of conjugative transfer
and/or transposition [Mobile and extrachromosomal
element functions, Plasmid functions].
Length = 472
Score = 27.3 bits (61), Expect = 1.4
Identities = 12/39 (30%), Positives = 21/39 (53%), Gaps = 4/39 (10%)
Query: 5 KIKSPVTFCHNDLQEGNILYRESPNNNNSSNNNNNNNNN 43
+++S +TF ND G I P NN+ +N ++ +N
Sbjct: 309 QVRS-LTFVFND---GTIRTVPRPRNNSQTNGGDSGKSN 343
>gnl|CDD|219312 pfam07150, DUF1390, Protein of unknown function (DUF1390). This
family consists of several Paramecium bursaria
chlorella virus 1 (PBCV-1) proteins of around 250
residues in length. The function of this family is
unknown.
Length = 229
Score = 27.4 bits (61), Expect = 1.4
Identities = 10/27 (37%), Positives = 13/27 (48%)
Query: 30 NNNSSNNNNNNNNNNNNNNNIDLVVID 56
++N NN N N N I+L V D
Sbjct: 62 GVVNNNVNNINKTINTKNITINLTVPD 88
>gnl|CDD|240174 cd05153, HomoserineK_II, Homoserine Kinase, type II. Homoserine
kinase is part of a larger superfamily that includes the
catalytic domains of other kinases, such as the typical
serine/threonine/tyrosine protein kinases (PKs), RIO
kinases, actin-fragmin kinase (AFK), and
phosphoinositide 3-kinase (PI3K). This subfamily is
composed of unusual homoserine kinases, from a subset of
bacteria, which have a PK fold. These proteins do not
bear any similarity to the GHMP family homoserine
kinases present in most bacteria and eukaryotes.
Homoserine kinase catalyzes the transfer of the
gamma-phosphoryl group from ATP to L-homoserine
producing L-homoserine phosphate, an intermediate in the
production of the amino acids threonine, methionine, and
isoleucine.
Length = 296
Score = 27.2 bits (61), Expect = 1.4
Identities = 6/17 (35%), Positives = 10/17 (58%)
Query: 54 VIDFEYCSYNYRAFDIA 70
VIDF + + +D+A
Sbjct: 197 VIDFYFACTDAFLYDLA 213
>gnl|CDD|214734 smart00587, CHK, ZnF_C4 abd HLH domain containing kinases domain.
subfamily of choline kinases.
Length = 196
Score = 26.9 bits (60), Expect = 1.9
Identities = 12/66 (18%), Positives = 21/66 (31%), Gaps = 17/66 (25%)
Query: 5 KIKSPVTFCHNDLQEGNILYRESPNNNNSSNNNNNNNNNNNNNNNIDLVVIDFEYCSYNY 64
H DL NI+++ ++ D+ +IDF+ Y
Sbjct: 115 DEGEFNVLNHGDLWANNIMFKY-----------------DDEGKPEDVALIDFQLSHYGS 157
Query: 65 RAFDIA 70
A D+
Sbjct: 158 PAEDLH 163
>gnl|CDD|215570 PLN03091, PLN03091, hypothetical protein; Provisional.
Length = 459
Score = 26.9 bits (59), Expect = 2.1
Identities = 10/23 (43%), Positives = 18/23 (78%)
Query: 28 PNNNNSSNNNNNNNNNNNNNNNI 50
++SS+ NN+NNNN++N+N+
Sbjct: 187 EVESSSSSKINNSNNNNHSNSNL 209
>gnl|CDD|214408 MTH00036, ATP8, ATP synthase F0 subunit 8; Validated.
Length = 54
Score = 25.4 bits (56), Expect = 2.2
Identities = 9/26 (34%), Positives = 18/26 (69%)
Query: 22 ILYRESPNNNNSSNNNNNNNNNNNNN 47
L + + N+SN+++N +++NNNN
Sbjct: 26 YLLLNNWPSTNASNSSSNTSSSNNNN 51
>gnl|CDD|233667 TIGR01982, UbiB, 2-polyprenylphenol 6-hydroxylase. This model
represents the enzyme (UbiB) which catalyzes the first
hydroxylation step in the ubiquinone biosynthetic
pathway in bacteria. It is believed that the reaction is
2-polyprenylphenol -> 6-hydroxy-2-polyprenylphenol. This
model finds hits primarily in the proteobacteria. The
gene is also known as AarF in certain species
[Biosynthesis of cofactors, prosthetic groups, and
carriers, Menaquinone and ubiquinone].
Length = 437
Score = 26.5 bits (59), Expect = 2.6
Identities = 7/18 (38%), Positives = 8/18 (44%)
Query: 12 FCHNDLQEGNILYRESPN 29
F H DL GNI +
Sbjct: 278 FFHADLHPGNIFVLKDGK 295
>gnl|CDD|131944 TIGR02898, spore_YhcN_YlaJ, sporulation lipoprotein, YhcN/YlaJ
family. YhcN and YlaJ are predicted lipoproteins that
have been detected as spore proteins but not vegetative
proteins in Bacillus subtilis. Both appear to be
expressed under control of the RNA polymerase sigma-G
factor. The YlaJ-like members of this family have a
low-complexity, strongly acidic 40-residue C-terminal
domain that is not included in the seed alignment for
this model. A portion of the low-complexity region
between the lipoprotein signal sequence and the main
conserved region of the protein family was also excised
from the seed alignment [Cellular processes,
Sporulation and germination].
Length = 158
Score = 25.8 bits (57), Expect = 4.4
Identities = 13/31 (41%), Positives = 16/31 (51%), Gaps = 4/31 (12%)
Query: 26 ESPNNN----NSSNNNNNNNNNNNNNNNIDL 52
PNNN N + NNN N N+ N+ DL
Sbjct: 22 NPPNNNVGETNVMSKNNNGMNTTNDTNDGDL 52
>gnl|CDD|153137 cd06269, PBP1_glutamate_receptors_like, Family C G-protein
couples receptors (GPCRs), membrane bound guanylyl
cyclases such as the family of natriuretic peptide
receptors (NPRs), and the N-terminal
leucine/isoleucine/valine- binding protein
(LIVBP)-like domain of the ionotropic glutamate
receptors. This CD represents the ligand-binding
domain of the family C G-protein couples receptors
(GPCRs), membrane bound guanylyl cyclases such as the
family of natriuretic peptide receptors (NPRs), and the
N-terminal leucine/isoleucine/valine- binding protein
(LIVBP)-like domain of the ionotropic glutamate
receptors, all of which are structurally similar and
related to the periplasmic-binding fold type I family.
The family C GPCRs consist of metabotropic glutamate
receptor (mGluR) receptors, a calcium-sensing receptor
(CaSR), gamma-aminobutyric receptors (GABAb), the
promiscuous L-alpha-amino acid receptor GPR6A, families
of taste and pheromone receptors, and orphan receptors.
Truncated splicing variants of the orphan receptors are
not included in this CD. The family C GPCRs are
activated by endogenous agonists such as amino acids,
ions, and sugar based molecules. Their amino terminal
ligand-binding region is homologous to the bacterial
leucine-isoleucine-valine binding protein (LIVBP) and a
leucine binding protein (LBP). The ionotropic glutamate
receptors (iGluRs) have an integral ion channel and are
subdivided into three major groups based on their
pharmacology and structural similarities: NMDA
receptors, AMPA receptors, and kainate receptors. The
family of membrane bound guanylyl cyclases is further
divided into three subfamilies: the ANP receptor
(GC-A)/C-type natriuretic peptide receptor (GC-B), the
heat-stable enterotoxin receptor (GC-C)/sensory organ
specific membrane GCs such as retinal receptors (GC-E,
GC-F), and olfactory receptors (GC-D and GC-G).
Length = 298
Score = 25.9 bits (57), Expect = 4.7
Identities = 8/39 (20%), Positives = 12/39 (30%)
Query: 39 NNNNNNNNNNNIDLVVIDFEYCSYNYRAFDIANHFVESV 77
NN+ N L ++ C AF A +
Sbjct: 28 AVEEINNDLPNTTLGYEIYDSCCSPSDAFSAALDLCSLL 66
>gnl|CDD|217303 pfam02958, EcKinase, Ecdysteroid kinase. This family includes
ecdysteroid 22-kinase, an enzyme responsible for the
phosphorylation of ecdysteroids (insect growth and
moulting hormones) at C-22, to form physiologically
inactive ecdysteroid 22-phosphates.
Length = 293
Score = 25.3 bits (56), Expect = 7.2
Identities = 12/63 (19%), Positives = 23/63 (36%), Gaps = 18/63 (28%)
Query: 11 TFCHNDLQEGNILYRESPNNNNSSNNNNNNNNNNNNNNNIDLVVIDFEYCSYNYRAFDIA 70
H DL NI+++ + D++++DF+ Y A D+
Sbjct: 215 VLNHGDLWVNNIMFK-----------------YDEEGEPEDVILVDFQLSRYGSPALDL- 256
Query: 71 NHF 73
+F
Sbjct: 257 LYF 259
>gnl|CDD|222446 pfam13903, Claudin_2, PMP-22/EMP/MP20/Claudin tight junction.
Members of this family are claudins, that form tight
junctions between cells.
Length = 170
Score = 25.0 bits (55), Expect = 8.0
Identities = 6/37 (16%), Positives = 12/37 (32%), Gaps = 6/37 (16%)
Query: 27 SPNNNNSSNNNNNNNNNNNNNNNIDLVVIDFEYCSYN 63
P NS +N N ++ + + C +
Sbjct: 20 DPRRTNSLGSNGAVNTGLFSHLGL------WRICFTS 50
>gnl|CDD|133910 PHA00540, PHA00540, hypothetical protein.
Length = 715
Score = 25.4 bits (55), Expect = 8.7
Identities = 13/43 (30%), Positives = 25/43 (58%), Gaps = 1/43 (2%)
Query: 54 VIDFEYC-SYNYRAFDIANHFVESVYDYSYKHFPHYTVKRENY 95
+ DF Y + Y+ FD++ V++V Y H+P +K++N+
Sbjct: 143 LTDFIYAFAVKYKMFDVSKEIVDNVDRYKENHYPRVKLKQDNW 185
>gnl|CDD|220296 pfam09580, Spore_YhcN_YlaJ, Sporulation lipoprotein YhcN/YlaJ
(Spore_YhcN_YlaJ). This entry contains YhcN and YlaJ,
which are predicted lipoproteins that have been
detected as spore proteins but not vegetative proteins
in Bacillus subtilis. Both appear to be expressed under
control of the RNA polymerase sigma-G factor. The
YlaJ-like members of this family have a low-complexity,
strongly acidic, 40-residue C-terminal domain.
Length = 169
Score = 25.0 bits (55), Expect = 8.9
Identities = 10/37 (27%), Positives = 13/37 (35%)
Query: 15 NDLQEGNILYRESPNNNNSSNNNNNNNNNNNNNNNID 51
N + NN N+ NNNN NN +
Sbjct: 20 RQNVTDNDGNTNNVNNRNNRNNNNGYGRLTKNNVTGE 56
>gnl|CDD|177251 MTH00208, ND5, NADH dehydrogenase subunit 5; Provisional.
Length = 628
Score = 24.9 bits (55), Expect = 9.5
Identities = 11/24 (45%), Positives = 15/24 (62%)
Query: 27 SPNNNNSSNNNNNNNNNNNNNNNI 50
S +N + NNNNN+ N NN+N
Sbjct: 34 STSNASLGGNNNNNSIINYNNSNF 57
>gnl|CDD|237183 PRK12728, fliE, flagellar hook-basal body protein FliE;
Provisional.
Length = 102
Score = 24.5 bits (54), Expect = 9.9
Identities = 8/24 (33%), Positives = 9/24 (37%)
Query: 27 SPNNNNSSNNNNNNNNNNNNNNNI 50
SPN N +N N NN
Sbjct: 7 SPNQKVFDQNGSNKTNKNNPAEAQ 30
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.314 0.131 0.403
Gapped
Lambda K H
0.267 0.0767 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 5,359,654
Number of extensions: 445219
Number of successful extensions: 1803
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1278
Number of HSP's successfully gapped: 273
Length of query: 107
Length of database: 10,937,602
Length adjustment: 72
Effective length of query: 35
Effective length of database: 7,744,114
Effective search space: 271043990
Effective search space used: 271043990
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 53 (24.1 bits)