RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy15665
(107 letters)
>3feg_A Choline/ethanolamine kinase; non-protein kinase, choline kinase,
structural genomics CONS SGC, hemicholinium-3,
phosphorylation; HET: HC7 ADP AMP; 1.30A {Homo sapiens}
PDB: 3lq3_A* 2ig7_A*
Length = 379
Score = 72.2 bits (176), Expect = 2e-16
Identities = 44/101 (43%), Positives = 57/101 (56%), Gaps = 18/101 (17%)
Query: 1 KHLLKIKSPVTFCHNDLQEGNILYRESPNNNNSSNNNNNNNNNNNNNNNIDLVVIDFEYC 60
K L SPV FCHND+QEGNIL P N +S L+++DFEY
Sbjct: 211 KLLESTPSPVVFCHNDIQEGNILLLSEPENADS------------------LMLVDFEYS 252
Query: 61 SYNYRAFDIANHFVESVYDYSYKHFPHYTVKRENYPSYSLR 101
SYNYR FDI NHF E VYDY+++ +P Y + +YP+ +
Sbjct: 253 SYNYRGFDIGNHFCEWVYDYTHEEWPFYKARPTDYPTQEQQ 293
>1nw1_A Choline kinase (49.2 KD); phospholipid synthesis, protein kinase
fold, transferase; 2.02A {Caenorhabditis elegans} SCOP:
d.144.1.8
Length = 429
Score = 71.2 bits (173), Expect = 5e-16
Identities = 47/107 (43%), Positives = 61/107 (57%), Gaps = 6/107 (5%)
Query: 1 KHLLKIKSPVTFCHNDLQEGNILYRESPN------NNNSSNNNNNNNNNNNNNNNIDLVV 54
H+ KSPVTFCHNDLQEGNIL ++ + + + N+ + N + LV+
Sbjct: 240 AHISLSKSPVTFCHNDLQEGNILLPKASSGNIRMPSLSDETQALGNSLSAFNPADPRLVL 299
Query: 55 IDFEYCSYNYRAFDIANHFVESVYDYSYKHFPHYTVKRENYPSYSLR 101
IDFEY SYNYRAFD ANHF+E DY P Y ++ EN+P
Sbjct: 300 IDFEYASYNYRAFDFANHFIEWTIDYDIDEAPFYKIQTENFPENDQM 346
>3f2s_A CK, chetk-alpha, choline kinase alpha; non-protein kinase,
structural genomics consortium, SGC, hemicholinium-3,
alternative splicing, cytoplasm; HET: ADP HC6; 1.70A
{Homo sapiens} PDB: 3f2r_A* 3g15_A* 2i7q_A 2cko_A
2ckp_A* 2ckq_A*
Length = 401
Score = 68.5 bits (166), Expect = 3e-15
Identities = 43/102 (42%), Positives = 52/102 (50%), Gaps = 16/102 (15%)
Query: 1 KHLLKIKSPVTFCHNDLQEGNILYRESPNNNNSSNNNNNNNNNNNNNNNIDLVVIDFEYC 60
L SPV FCHND QEGNIL E N+ L++IDFEY
Sbjct: 235 SLLESTPSPVVFCHNDCQEGNILLLEGRENSEKQK----------------LMLIDFEYS 278
Query: 61 SYNYRAFDIANHFVESVYDYSYKHFPHYTVKRENYPSYSLRN 102
SYNYR FDI NHF E +YDYSY+ +P + YP+ +
Sbjct: 279 SYNYRGFDIGNHFCEWMYDYSYEKYPFFRANIRKYPTKKQQL 320
>3mes_A Choline kinase; malaria, structural genomics, structural genomics
consortium, SGC, transferase; HET: ADP DME PT3; 2.35A
{Cryptosporidium parvum}
Length = 424
Score = 59.7 bits (143), Expect = 5e-12
Identities = 31/101 (30%), Positives = 46/101 (45%), Gaps = 23/101 (22%)
Query: 1 KHLLKIKSPVTFCHNDLQEGNILYRESPNNNNSSNNNNNNNNNNNNNNNIDLVVIDFEYC 60
L + F HNDLQE N+L ++ + +ID+EY
Sbjct: 253 LKLYSPAFSLVFAHNDLQENNLLQTQNN-----------------------IRMIDYEYS 289
Query: 61 SYNYRAFDIANHFVESVYDYSYKHFPHYTVKRENYPSYSLR 101
+ N+ DIAN+F E +YDY + P++ K E+YP LR
Sbjct: 290 AINFAGADIANYFCEYIYDYCSEKQPYFKFKYEDYPCEELR 330
>3c5i_A Choline kinase; choline, kinase, malaria, transferase, structural
genomics, structural genomics consortium; 2.20A
{Plasmodium knowlesi} PDB: 3fi8_A*
Length = 369
Score = 57.3 bits (137), Expect = 3e-11
Identities = 34/101 (33%), Positives = 48/101 (47%), Gaps = 23/101 (22%)
Query: 1 KHLLKIKSPVTFCHNDLQEGNILYRESPNNNNSSNNNNNNNNNNNNNNNIDLVVIDFEYC 60
+ + + FCHNDLQE NI+ N N L +IDFEY
Sbjct: 203 SKSDNLANTIVFCHNDLQENNII-----------------------NTNKCLRLIDFEYS 239
Query: 61 SYNYRAFDIANHFVESVYDYSYKHFPHYTVKRENYPSYSLR 101
+N+ A DIAN F+E+ DYS +P + + ++ Y SY R
Sbjct: 240 GFNFLATDIANFFIETSIDYSVSSYPFFEIDKKKYISYENR 280
>2qg7_A Ethanolamine kinase PV091845; malaria, SGC, structural genomics
consortium, transferase; 2.41A {Plasmodium vivax}
Length = 458
Score = 55.2 bits (131), Expect = 2e-10
Identities = 24/114 (21%), Positives = 34/114 (29%), Gaps = 16/114 (14%)
Query: 1 KHLLKIKSPVTFCHNDLQEGNILYRE---------------SPNNNNSSNNNNNNNNNNN 45
+ SP+ CH DL NI+
Sbjct: 281 SLCKRENSPIVLCHCDLLSSNIINTVGGGEAGELGEAGETGEGGETGEGGETGEGGETGE 340
Query: 46 NNNNIDLVVIDFEYCSYNYRAFDIANHFVE-SVYDYSYKHFPHYTVKRENYPSY 98
+ IDFEY RA+DIANHF E + ++ + P + Y
Sbjct: 341 GGEGDSISFIDFEYSCPMERAYDIANHFNEYAGFNCDWDLTPSKEEEYHFIMHY 394
>3dxq_A Choline/ethanolamine kinase family protein; NP_106042.1, STR
genomics, joint center for structural genomics, JCSG,
prote structure initiative; HET: MSE; 2.55A
{Mesorhizobium loti}
Length = 301
Score = 54.0 bits (129), Expect = 5e-10
Identities = 14/80 (17%), Positives = 24/80 (30%), Gaps = 23/80 (28%)
Query: 1 KHLLKIKSPVTFCHNDLQEGNILYRESPNNNNSSNNNNNNNNNNNNNNNIDLVVIDFEYC 60
L P+ CH D N L + ++D+EY
Sbjct: 164 SALAAHPLPLAACHCDPLCENFLD-----------------------TGERMWIVDWEYS 200
Query: 61 SYNYRAFDIANHFVESVYDY 80
N +D+ + VE ++
Sbjct: 201 GMNDPLWDLGDLSVEGKFNA 220
>2pyw_A Uncharacterized protein; 5-methylthioribose kinase, plant
methionine recycling, refol transferase; HET: SR1 ADP;
1.90A {Arabidopsis thaliana}
Length = 420
Score = 42.7 bits (99), Expect = 4e-06
Identities = 16/98 (16%), Positives = 27/98 (27%), Gaps = 24/98 (24%)
Query: 11 TFCHNDLQEGNILYRESPNNNNSSNNNNNNNNNNNNNNNIDLVVIDFEYCSYNYRAFDIA 70
H DL G+++ VID E+ Y FDI
Sbjct: 233 ALIHGDLHTGSVMV-----------------------TQDSTQVIDPEFSFYGPMGFDIG 269
Query: 71 NHFVESVYDY-SYKHFPHYTVKRENYPSYSLRNSSWVY 107
+ + + + R+ Y + LR +
Sbjct: 270 AYLGNLILAFFAQDGHATQENDRKEYKQWILRTIEQTW 307
>3i1a_A Spectinomycin phosphotransferase; protein kinase, aminoglycoside
phosphotransferase, antibiotic resistance; HET: MES PG4;
1.70A {Legionella pneumophila} PDB: 3i0q_A* 3i0o_A*
3q2m_A*
Length = 339
Score = 42.4 bits (99), Expect = 5e-06
Identities = 9/69 (13%), Positives = 20/69 (28%), Gaps = 22/69 (31%)
Query: 2 HLLKIKSPVTFCHNDLQEGNILYRESPNNNNSSNNNNNNNNNNNNNNNIDLVVIDFEYCS 61
+ CH+D+ GN+L + + +ID++
Sbjct: 198 KIQPDLDKYVLCHSDIHAGNVLVGNEES----------------------IYIIDWDEPM 235
Query: 62 YNYRAFDIA 70
+ D+
Sbjct: 236 LAPKERDLM 244
>2olc_A MTR kinase, methylthioribose kinase; kinase ADP-2HO complex,
transferase; HET: CPS ADP; 2.00A {Bacillus subtilis}
SCOP: d.144.1.6 PDB: 2pu8_A* 2pui_A* 2pul_A* 2pun_A*
2pup_A*
Length = 397
Score = 40.3 bits (93), Expect = 3e-05
Identities = 14/79 (17%), Positives = 20/79 (25%), Gaps = 23/79 (29%)
Query: 11 TFCHNDLQEGNILYRESPNNNNSSNNNNNNNNNNNNNNNIDLVVIDFEYCSYNYRAFDIA 70
T H DL G+I E + VID E+ Y FD+
Sbjct: 228 TLIHGDLHTGSIFASEH-----------------------ETKVIDPEFAFYGPIGFDVG 264
Query: 71 NHFVESVYDYSYKHFPHYT 89
+ +
Sbjct: 265 QFIANLFLNALSRDGADRE 283
>1nd4_A Aminoglycoside 3'-phosphotransferase; protein kinase, ATPase,
kanamycin; HET: KAN; 2.10A {Klebsiella pneumoniae} SCOP:
d.144.1.6
Length = 264
Score = 36.5 bits (84), Expect = 6e-04
Identities = 10/63 (15%), Positives = 12/63 (19%), Gaps = 24/63 (38%)
Query: 9 PVTFCHNDLQEGNILYRESPNNNNSSNNNNNNNNNNNNNNNIDLV-VIDFEYCSYNYRAF 67
+ H D NI+ ID R
Sbjct: 183 DLVVTHGDACLPNIMVENG-----------------------RFSGFIDCGRLGVADRYQ 219
Query: 68 DIA 70
DIA
Sbjct: 220 DIA 222
>4fev_A Aminoglycoside 3'-phosphotransferase APHA1-IAB; pyrazolopyrimidine,
PP1, protein kinase inhibitor; HET: KAN PP1; 1.89A
{Acinetobacter baumannii} PDB: 4feu_A* 4few_A* 4fex_A*
4ej7_A* 3r78_A*
Length = 272
Score = 36.2 bits (83), Expect = 8e-04
Identities = 10/63 (15%), Positives = 15/63 (23%), Gaps = 24/63 (38%)
Query: 9 PVTFCHNDLQEGNILYRESPNNNNSSNNNNNNNNNNNNNNNIDLV-VIDFEYCSYNYRAF 67
H D N+++ E L+ ID R
Sbjct: 192 DSVVTHGDFSLDNLIFDEG-----------------------KLIGCIDVGRVGIADRYQ 228
Query: 68 DIA 70
D+A
Sbjct: 229 DLA 231
>2q83_A YTAA protein; 2635576, structural genomics, joint center for
structu genomics, JCSG, protein structure initiative,
PSI-2, transf; HET: ADN CIT UNL; 2.50A {Bacillus
subtilis}
Length = 346
Score = 33.8 bits (77), Expect = 0.005
Identities = 13/71 (18%), Positives = 20/71 (28%), Gaps = 22/71 (30%)
Query: 1 KHLLKIKSPVTFCHNDLQEGNILYRESPNNNNSSNNNNNNNNNNNNNNNIDLVVIDFEYC 60
++K CH D GN L N + VID +
Sbjct: 213 PWTEQLKKSPNLCHQDYGTGNTLL----------------------GENEQIWVIDLDTV 250
Query: 61 SYNYRAFDIAN 71
S++ D+
Sbjct: 251 SFDLPIRDLRK 261
>3tm0_A Aminoglycoside 3'-phosphotransferase; protein kinase,
phosphorylation, transferase-antibiotic COMP; HET: ANP
B31; 2.10A {Enterococcus faecalis} PDB: 2b0q_A* 1l8t_A*
3q2j_A* 1j7i_A* 1j7u_A* 3h8p_A* 1j7l_A* 2bkk_A*
Length = 263
Score = 33.5 bits (76), Expect = 0.006
Identities = 11/63 (17%), Positives = 18/63 (28%), Gaps = 22/63 (34%)
Query: 8 SPVTFCHNDLQEGNILYRESPNNNNSSNNNNNNNNNNNNNNNIDLVVIDFEYCSYNYRAF 67
+ F H DL + NI + + + ID + +
Sbjct: 181 EELVFSHGDLGDSNIFVK---------------------DGKV-SGFIDLGRSGRADKWY 218
Query: 68 DIA 70
DIA
Sbjct: 219 DIA 221
>1zyl_A Hypothetical protein YIHE; putative protein kinase, structural
genomics, PSI, protein structure initiative; 2.80A
{Escherichia coli} SCOP: d.144.1.6
Length = 328
Score = 32.0 bits (72), Expect = 0.021
Identities = 10/65 (15%), Positives = 16/65 (24%), Gaps = 24/65 (36%)
Query: 9 PVTFCHNDLQEGNILYRESPNNNNSSNNNNNNNNNNNNNNNIDLVVIDFEYCSYNYRAFD 68
V H D GNIL+R+ + +D + D
Sbjct: 194 TVLRLHGDCHAGNILWRD------------------------GPMFVDLDDARNGPAVQD 229
Query: 69 IANHF 73
+
Sbjct: 230 LWMLL 234
>3r70_A Aminoglycoside phosphotransferase; structural genomics, center for
structural genomics of infec diseases, csgid; HET: MSE
ADP PE3; 1.80A {Escherichia coli} PDB: 3r6z_A* 3uzr_A*
4dca_A* 3hav_A* 3ham_A*
Length = 320
Score = 30.1 bits (67), Expect = 0.12
Identities = 18/104 (17%), Positives = 27/104 (25%), Gaps = 36/104 (34%)
Query: 1 KHLLKIKSPVTFCHNDLQEGNILYRESPNNNNSSNNNNNNNNNNNNNNNIDLV-VIDFEY 59
+ + K HND N+++R + L VIDF
Sbjct: 198 SNAVLFKYTPCLVHNDFSANNMIFRNN-----------------------RLFGVIDFGD 234
Query: 60 CSYNYRAFDIANH-----------FVESVYDYSYKHFPHYTVKR 92
+ D F V Y Y+H +R
Sbjct: 235 FNVGDPDNDFLCLLDCSTDDFGKEFGRKVLKY-YQHKAPEVAER 277
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 29.8 bits (66), Expect = 0.14
Identities = 11/42 (26%), Positives = 18/42 (42%), Gaps = 3/42 (7%)
Query: 61 SYN-YRAFDIANHFVESVYD-YSYKHFPHYTVKRENYPSYSL 100
YN + FD ++ + D Y Y H H+ E+ +L
Sbjct: 452 HYNIPKTFD-SDDLIPPYLDQYFYSHIGHHLKNIEHPERMTL 492
Score = 27.9 bits (61), Expect = 0.61
Identities = 9/36 (25%), Positives = 17/36 (47%), Gaps = 1/36 (2%)
Query: 55 IDFEYCSYNYRAFDIANHFVES-VYDYSYKHFPHYT 89
+DFE + Y+ DI + F ++ V ++ K
Sbjct: 7 MDFETGEHQYQYKDILSVFEDAFVDNFDCKDVQDMP 42
>2jbh_A Phosphoribosyltransferase domain-containing prote;
glycosyltransferase, purine salvage; HET: 5GP; 1.7A
{Homo sapiens}
Length = 225
Score = 28.2 bits (63), Expect = 0.44
Identities = 10/43 (23%), Positives = 16/43 (37%), Gaps = 8/43 (18%)
Query: 64 YRAFDIANHFVESV-----YDYSYKHFPH-YTVKRENYPSYSL 100
Y F+I N FV V Y+ ++ H + Y +
Sbjct: 185 YAGFEIPNLFV--VGYALDYNEYFRDLNHICVINEHGKEKYRV 225
>1z7g_A HGPRT, HGPRTASE, hypoxanthine-guanine phosphoribosyltransferase;
flexibility, trans CIS peptide bond isomerization,
nucleotide binding; 1.90A {Homo sapiens} SCOP: c.61.1.1
PDB: 1hmp_A* 1bzy_A 3gep_A* 3ggc_A* 3ggj_A* 1d6n_A*
2vfa_A*
Length = 217
Score = 27.9 bits (63), Expect = 0.53
Identities = 10/41 (24%), Positives = 17/41 (41%), Gaps = 8/41 (19%)
Query: 64 YRAFDIANHFVESV-Y--DYS--YKHFPH-YTVKRENYPSY 98
+ F+I + FV V Y DY+ ++ H + Y
Sbjct: 177 FVGFEIPDKFV--VGYALDYNEYFRDLNHVCVISETGKAKY 215
>3ozf_A Hypoxanthine-guanine-xanthine phosphoribosyltrans;
transferase-transferase inhibitor complex; HET: HPA;
1.94A {Plasmodium falciparum fcr-3} PDB: 3ozg_A* 1cjb_A*
Length = 250
Score = 27.6 bits (62), Expect = 0.69
Identities = 13/42 (30%), Positives = 18/42 (42%), Gaps = 8/42 (19%)
Query: 64 YRAFDIANHFVESV-Y--DYS--YKHFPH-YTVKRENYPSYS 99
+ F I +HFV V Y DY+ ++ H V E Y
Sbjct: 207 FVGFSIPDHFV--VGYSLDYNEIFRDLDHCCLVNDEGKKKYK 246
>1fsg_A HGPRTASE, hypoxanthine-guanine phosphoribosyltransferase;
glycosyltransferase, purine salvage; HET: PRP 9DG; 1.05A
{Toxoplasma gondii} SCOP: c.61.1.1 PDB: 1qk3_A* 1qk4_A*
1qk5_A* 1dbr_A
Length = 233
Score = 27.2 bits (61), Expect = 0.90
Identities = 5/41 (12%), Positives = 15/41 (36%), Gaps = 8/41 (19%)
Query: 64 YRAFDIANHFVESV-----YDYSYKHFPH-YTVKRENYPSY 98
+ F I + ++ V ++ ++ F H + +
Sbjct: 193 FVGFSIEDVWI--VGCCYDFNEMFRDFDHVAVLSDAARKKF 231
>3sg8_A APH(2'')-ID; antibiotic resistance enzyme, transferase,
aminoglycoside, phosphorylation, transferase-antibiotic
complex; HET: TOY; 1.80A {Enterococcus casseliflavus}
PDB: 3sg9_A* 3n4v_A 3n4t_A 3n4u_A 3r81_A* 3r80_A*
3r7z_A* 3r82_A* 3vcq_A* 4dbx_A 4de4_A* 4dfb_A* 4dfu_A*
4dt9_A* 4dt8_A* 4dtb_A* 3sgc_A 4dta_A* 3lzh_A
Length = 304
Score = 27.1 bits (60), Expect = 1.0
Identities = 5/17 (29%), Positives = 7/17 (41%)
Query: 8 SPVTFCHNDLQEGNILY 24
HND +IL+
Sbjct: 189 YYPCLIHNDFSSDHILF 205
>1tc1_A Protein (hypoxanthine phosphoribosyltransferase);
transferase,phosphoribosyltransferase, purine salvage,
nucleotide metabolism; HET: FMB MES; 1.41A {Trypanosoma
cruzi} SCOP: c.61.1.1 PDB: 1tc2_A* 1p19_A* 1p18_A*
1p17_A* 1i0l_A* 1i14_A* 1i0i_A* 1i13_A*
Length = 220
Score = 26.8 bits (60), Expect = 1.4
Identities = 10/38 (26%), Positives = 16/38 (42%), Gaps = 8/38 (21%)
Query: 64 YRAFDIANHFVESV-----YDYSYKHFPH-YTVKRENY 95
Y +I N FV + YD +Y+ ++ E Y
Sbjct: 154 YVVANIPNAFV--IGYGLDYDDTYRELRDIVVLRPEVY 189
>1pzm_A HGPRT, hypoxanthine-guanine phosphoribosyltransferase; HET: 5GP;
2.10A {Leishmania tarentolae} SCOP: c.61.1.1
Length = 211
Score = 26.0 bits (58), Expect = 2.2
Identities = 9/38 (23%), Positives = 14/38 (36%), Gaps = 8/38 (21%)
Query: 64 YRAFDIANHFVESV-----YDYSYKHFPH-YTVKRENY 95
Y I FV + + SY+ +K+E Y
Sbjct: 169 YPVITIPRAFV--IGYGMDFAESYRELRDICVLKKEYY 204
>3dml_A Putative uncharacterized protein; thioredoxin, oxidoreductase,
sulfur oxidation, thiol- disulfide oxidoreductase; HET:
MSE; 1.90A {Paracoccus denitrificans} PDB: 3d4t_A*
Length = 116
Score = 25.8 bits (56), Expect = 2.4
Identities = 4/29 (13%), Positives = 19/29 (65%)
Query: 34 SNNNNNNNNNNNNNNNIDLVVIDFEYCSY 62
S++++++ +++++ + L++ + C Y
Sbjct: 4 SHHHHHHGSDDDDKAELRLLMFEQPGCLY 32
>2geb_A Hypoxanthine-guanine phosphoribosyltransferase; HGPRT, mutant,
inhibitor design, selectivity; 1.70A {Thermoanaerobacter
tengcongensis}
Length = 185
Score = 25.9 bits (58), Expect = 2.5
Identities = 12/38 (31%), Positives = 16/38 (42%), Gaps = 8/38 (21%)
Query: 64 YRAFDIANHFVESV-----YDYSYKHFPH-YTVKRENY 95
Y F I + FV V Y Y++ P +K E Y
Sbjct: 149 YCGFKIPDKFV--VGYGIDYAEKYRNLPFIGVLKPELY 184
>3hvu_A Hypoxanthine phosphoribosyltransferase; hypoxanthine-guanine
phosphoribosyltransferase, 2-(N-morphol ethanesulfonic
acid (MES), IDP01892; HET: MES; 1.95A {Bacillus
anthracis str} PDB: 3h83_A* 3kb8_A*
Length = 204
Score = 26.0 bits (58), Expect = 2.5
Identities = 10/40 (25%), Positives = 17/40 (42%), Gaps = 8/40 (20%)
Query: 64 YRAFDIANHFVESV-----YDYSYKHFPH-YTVKRENYPS 97
Y F + + FV V Y Y++ P+ +K Y +
Sbjct: 167 YVGFTVPHEFV--VGYGLDYKEQYRNLPYVGVLKPSVYSN 204
>1hgx_A HGXPRTASE, hypoxanthine-guanine-xanthine phosphoribosyltransferase;
glycosyltransferase, purine salvage, transferase
(glycosyltransferase); HET: 5GP; 1.90A {Tritrichomonas
foetus} SCOP: c.61.1.1
Length = 183
Score = 25.9 bits (58), Expect = 2.6
Identities = 7/38 (18%), Positives = 15/38 (39%), Gaps = 8/38 (21%)
Query: 64 YRAFDIANHFVESV-----YDYSYKHFPH-YTVKRENY 95
Y F + N ++ + + Y++ P +K Y
Sbjct: 147 YCGFVVENRYI--IGYGFDFHNKYRNLPVIGILKESVY 182
>1yfz_A Hypoxanthine-guanine phosphoribosyltransferase; protein-nucleotide
complex; HET: IMP; 2.20A {Thermoanaerobacter
tengcongensis} SCOP: c.61.1.1 PDB: 1r3u_A*
Length = 205
Score = 25.6 bits (57), Expect = 2.9
Identities = 12/38 (31%), Positives = 16/38 (42%), Gaps = 8/38 (21%)
Query: 64 YRAFDIANHFVESV-----YDYSYKHFPH-YTVKRENY 95
Y F I + FV V Y Y++ P +K E Y
Sbjct: 169 YCGFKIPDKFV--VGYGLDYAEKYRNLPFIGVLKPELY 204
>2vuw_A Serine/threonine-protein kinase haspin; cell cycle, transferase,
CAsp8, nucleotide binding; HET: MSE 5ID MPD; 1.80A {Homo
sapiens} PDB: 3f2n_A* 3e7v_A* 3dlz_A* 3fmd_A* 3iq7_A*
2wb8_A
Length = 336
Score = 25.6 bits (55), Expect = 4.4
Identities = 16/113 (14%), Positives = 36/113 (31%), Gaps = 10/113 (8%)
Query: 3 LLKIKSPVTFCHNDLQEGNILYRESPNNNNSSNNNNNNNNNNNNNNNIDLVVIDFEYCSY 62
L ++ + F H DL GN+L +++ N ++ + + + +ID+
Sbjct: 174 LAVAEASLRFEHRDLHWGNVLLKKTSLKKLHY--TLNGKSSTIPSCGLQVSIIDYTLSRL 231
Query: 63 NYRAFDIAN------HFVESVYDYSYKHFP-HYTVKRENYPSYSLR-NSSWVY 107
+ DY + + + Y N W++
Sbjct: 232 ERDGIVVFCDVSMDEDLFTGDGDYQFDIYRLMKKENNNRWGEYHPYSNVLWLH 284
>3nzj_H Proteasome component PUP1; ubiquitin, protein degradation,
N-terminal nucleophilic HYDR 19S regulatory particle;
HET: TY5 TRO MES; 2.40A {Saccharomyces cerevisiae} PDB:
3nzw_H* 3nzx_H*
Length = 261
Score = 25.4 bits (56), Expect = 4.7
Identities = 7/36 (19%), Positives = 15/36 (41%)
Query: 48 NNIDLVVIDFEYCSYNYRAFDIANHFVESVYDYSYK 83
+N+D+ V++ + R + N E Y +
Sbjct: 200 SNVDVCVMEIGKDAEYLRNYLTPNVREEKQKSYKFP 235
>1ryp_I 20S proteasome; multicatalytic proteinase, protein degradation,
antigen processing, hydrolase, protease; 1.90A
{Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1g0u_H*
1jd2_H* 1g65_H 1vsy_I 1z7q_I 2f16_H* 2fak_H* 2fny_H*
2gpl_H* 3d29_H* 3dy3_H* 3dy4_H* 3e47_H* 3gpj_H* 3gpt_H*
3gpw_H* 3hye_H* 3l5q_M 3mg0_H* 3mg4_H* ...
Length = 222
Score = 24.9 bits (55), Expect = 6.3
Identities = 7/36 (19%), Positives = 15/36 (41%)
Query: 48 NNIDLVVIDFEYCSYNYRAFDIANHFVESVYDYSYK 83
+N+D+ V++ + R + N E Y +
Sbjct: 171 SNVDVCVMEIGKDAEYLRNYLTPNVREEKQKSYKFP 206
>3d1u_A Putative fructosamine-3-kinase; YP_290396.1, structural genomics,
joint center for structural genomics, JCSG, protein
structure initiative; 1.85A {Thermobifida fusca} PDB:
3f7w_A
Length = 288
Score = 24.6 bits (53), Expect = 7.3
Identities = 9/27 (33%), Positives = 13/27 (48%)
Query: 1 KHLLKIKSPVTFCHNDLQEGNILYRES 27
HL P H DL GN+L+++
Sbjct: 179 DHLAGDPEPPARIHGDLWNGNVLWQDD 205
>2bf1_A SIV GP120, exterior membrane glycoprotein GP120; virus protein,
envelope glycoprotein, AIDS, coat protein; HET: NAG BMA
NDG FUC MAN; 4.0A {Simian immunodeficiency virus} PDB:
3fus_A*
Length = 316
Score = 24.5 bits (54), Expect = 8.2
Identities = 2/22 (9%), Positives = 6/22 (27%)
Query: 31 NNSSNNNNNNNNNNNNNNNIDL 52
N + + N + +
Sbjct: 222 NWVEDRDVTNQRPKERHRRNYV 243
>2ywu_A Hypoxanthine-guanine phosphoribosyltransferase; rossmann fold,
structural genomics, NPPSFA; HET: IMP; 1.89A {Thermus
thermophilus} PDB: 2ywt_A* 2yws_A* 3acb_A 3acc_A*
3acd_A*
Length = 181
Score = 24.3 bits (54), Expect = 9.1
Identities = 6/36 (16%), Positives = 14/36 (38%), Gaps = 8/36 (22%)
Query: 64 YRAFDIANHFVESV-----YDYSYKHFPH-YTVKRE 93
Y F+I + +V ++ P +++ E
Sbjct: 146 YLGFEIEDAYV--YGYGLDRAQFDRNLPFITSIRPE 179
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.314 0.131 0.403
Gapped
Lambda K H
0.267 0.0544 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 1,663,213
Number of extensions: 86005
Number of successful extensions: 474
Number of sequences better than 10.0: 1
Number of HSP's gapped: 422
Number of HSP's successfully gapped: 93
Length of query: 107
Length of database: 6,701,793
Length adjustment: 72
Effective length of query: 35
Effective length of database: 4,691,481
Effective search space: 164201835
Effective search space used: 164201835
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 51 (23.8 bits)