RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy15665
         (107 letters)



>d1nw1a_ d.144.1.8 (A:) Choline kinase {Caenorhabditis elegans
           [TaxId: 6239]}
          Length = 395

 Score = 88.7 bits (219), Expect = 6e-23
 Identities = 48/107 (44%), Positives = 62/107 (57%), Gaps = 6/107 (5%)

Query: 1   KHLLKIKSPVTFCHNDLQEGNILYRESPNNNNSSNNNN------NNNNNNNNNNNIDLVV 54
            H+   KSPVTFCHNDLQEGNIL  ++ + N    + +       N+ +  N  +  LV+
Sbjct: 209 AHISLSKSPVTFCHNDLQEGNILLPKASSGNIRMPSLSDETQALGNSLSAFNPADPRLVL 268

Query: 55  IDFEYCSYNYRAFDIANHFVESVYDYSYKHFPHYTVKRENYPSYSLR 101
           IDFEY SYNYRAFD ANHF+E   DY     P Y ++ EN+P     
Sbjct: 269 IDFEYASYNYRAFDFANHFIEWTIDYDIDEAPFYKIQTENFPENDQM 315


>d2pula1 d.144.1.6 (A:5-396) Methylthioribose kinase MtnK {Bacillus
           subtilis [TaxId: 1423]}
          Length = 392

 Score = 40.6 bits (94), Expect = 9e-06
 Identities = 16/86 (18%), Positives = 22/86 (25%), Gaps = 23/86 (26%)

Query: 8   SPVTFCHNDLQEGNILYRESPNNNNSSNNNNNNNNNNNNNNNIDLVVIDFEYCSYNYRAF 67
           S  T  H DL  G+I   E                        +  VID E+  Y    F
Sbjct: 221 SAETLIHGDLHTGSIFASEH-----------------------ETKVIDPEFAFYGPIGF 257

Query: 68  DIANHFVESVYDYSYKHFPHYTVKRE 93
           D+         +   +         E
Sbjct: 258 DVGQFIANLFLNALSRDGADREPLYE 283


>d1nd4a_ d.144.1.6 (A:) Aminoglycoside 3'-phosphotransferase IIa
           (Kanamycin kinase) {Bacteria (Klebsiella pneumoniae)
           [TaxId: 573]}
          Length = 255

 Score = 36.2 bits (82), Expect = 3e-04
 Identities = 11/73 (15%), Positives = 15/73 (20%), Gaps = 22/73 (30%)

Query: 9   PVTFCHNDLQEGNILYRESPNNNNSSNNNNNNNNNNNNNNNIDLVVIDFEYCSYNYRAFD 68
            +   H D    NI+                        N      ID        R  D
Sbjct: 174 DLVVTHGDACLPNIMV----------------------ENGRFSGFIDCGRLGVADRYQD 211

Query: 69  IANHFVESVYDYS 81
           IA    +   +  
Sbjct: 212 IALATRDIAEELG 224


>d1j7la_ d.144.1.6 (A:) Type IIIa 3',5"-aminoglycoside
           phosphotransferase {Enterococcus faecalis [TaxId: 1351]}
          Length = 263

 Score = 29.6 bits (65), Expect = 0.054
 Identities = 12/73 (16%), Positives = 18/73 (24%), Gaps = 22/73 (30%)

Query: 9   PVTFCHNDLQEGNILYRESPNNNNSSNNNNNNNNNNNNNNNIDLVVIDFEYCSYNYRAFD 68
            + F H DL + NI  ++                            ID        + +D
Sbjct: 182 ELVFSHGDLGDSNIFVKDGKV----------------------SGFIDLGRSGRADKWYD 219

Query: 69  IANHFVESVYDYS 81
           IA        D  
Sbjct: 220 IAFCVRSIREDIG 232


>d1zyla1 d.144.1.6 (A:4-328) RdoA {Escherichia coli [TaxId: 562]}
          Length = 325

 Score = 26.7 bits (58), Expect = 0.50
 Identities = 10/73 (13%), Positives = 17/73 (23%), Gaps = 24/73 (32%)

Query: 1   KHLLKIKSPVTFCHNDLQEGNILYRESPNNNNSSNNNNNNNNNNNNNNNIDLVVIDFEYC 60
               +    V   H D   GNIL+R+                          + +D +  
Sbjct: 183 TAHWREDFTVLRLHGDCHAGNILWRD------------------------GPMFVDLDDA 218

Query: 61  SYNYRAFDIANHF 73
                  D+    
Sbjct: 219 RNGPAVQDLWMLL 231


>g1d4m.1 b.121.4.1 (4:,2:) Human enterovirus B coat proteins
          {Human coxsackievirus A9 [TaxId: 12067]}
          Length = 320

 Score = 24.8 bits (54), Expect = 2.4
 Identities = 4/25 (16%), Positives = 10/25 (40%)

Query: 25 RESPNNNNSSNNNNNNNNNNNNNNN 49
           +    + +S +   N+  +  N N
Sbjct: 6  TQKTGAHETSLSAAGNSIIHYTNIN 30



 Score = 24.4 bits (53), Expect = 3.1
 Identities = 3/25 (12%), Positives = 9/25 (36%)

Query: 27 SPNNNNSSNNNNNNNNNNNNNNNID 51
          +        + +   N+  +  NI+
Sbjct: 6  TQKTGAHETSLSAAGNSIIHYTNIN 30


>g1aym.1 b.121.4.1 (4:,2:) Rhinovirus coat proteins {Human
          rhinovirus 16, (HRV-16) [TaxId: 31708]}
          Length = 296

 Score = 24.4 bits (53), Expect = 3.6
 Identities = 6/27 (22%), Positives = 14/27 (51%)

Query: 25 RESPNNNNSSNNNNNNNNNNNNNNNID 51
          R++   +++ N  +N ++ N  N N  
Sbjct: 6  RQNVGTHSTQNMVSNGSSLNYFNINYF 32


>g1pvc.1 b.121.4.1 (4:,2:) Poliovirus coat proteins {Poliovirus
          type 3, strain Sabin [TaxId: 12086]}
          Length = 334

 Score = 24.4 bits (53), Expect = 3.8
 Identities = 4/25 (16%), Positives = 8/25 (32%)

Query: 25 RESPNNNNSSNNNNNNNNNNNNNNN 49
           +    + +SN     +  N    N
Sbjct: 6  SQKVGAHENSNRAYGGSTINYTTIN 30


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.314    0.131    0.403 

Gapped
Lambda     K      H
   0.267   0.0635    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 431,242
Number of extensions: 18774
Number of successful extensions: 171
Number of sequences better than 10.0: 1
Number of HSP's gapped: 114
Number of HSP's successfully gapped: 61
Length of query: 107
Length of database: 2,407,596
Length adjustment: 67
Effective length of query: 40
Effective length of database: 1,487,686
Effective search space: 59507440
Effective search space used: 59507440
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 47 (22.1 bits)