Query psy15666
Match_columns 339
No_of_seqs 378 out of 2460
Neff 8.9
Searched_HMMs 46136
Date Fri Aug 16 18:29:06 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy15666.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/15666hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG0656 ARA1 Aldo/keto reducta 100.0 2.8E-59 6.1E-64 414.1 25.4 237 84-338 30-278 (280)
2 KOG1577|consensus 100.0 7.2E-58 1.6E-62 405.0 23.6 256 69-330 15-288 (300)
3 PRK11172 dkgB 2,5-diketo-D-glu 100.0 3.1E-50 6.6E-55 363.7 26.1 236 82-336 16-260 (267)
4 PRK11565 dkgA 2,5-diketo-D-glu 100.0 3.7E-48 8.1E-53 351.2 24.9 237 81-338 27-273 (275)
5 COG0667 Tas Predicted oxidored 100.0 2.4E-46 5.2E-51 344.1 24.4 228 81-328 32-310 (316)
6 KOG1575|consensus 100.0 9E-46 2E-50 333.9 23.3 234 79-330 41-328 (336)
7 TIGR01293 Kv_beta voltage-depe 100.0 5.6E-45 1.2E-49 337.4 22.9 227 80-325 27-316 (317)
8 PRK10625 tas putative aldo-ket 100.0 2.3E-44 5E-49 337.1 22.6 236 81-328 29-340 (346)
9 cd06660 Aldo_ket_red Aldo-keto 100.0 1.3E-43 2.8E-48 323.9 24.8 227 80-325 27-285 (285)
10 PRK10376 putative oxidoreducta 100.0 1.1E-43 2.3E-48 324.7 23.7 229 80-327 38-288 (290)
11 PF00248 Aldo_ket_red: Aldo/ke 100.0 4.5E-44 9.7E-49 326.7 20.5 231 78-326 13-282 (283)
12 PRK09912 L-glyceraldehyde 3-ph 100.0 1.6E-43 3.6E-48 331.0 24.4 232 81-329 42-335 (346)
13 PLN02587 L-galactose dehydroge 100.0 3E-43 6.4E-48 325.6 24.7 233 80-328 29-301 (314)
14 PRK14863 bifunctional regulato 100.0 3.5E-41 7.7E-46 307.6 18.6 223 79-324 29-279 (292)
15 COG4989 Predicted oxidoreducta 100.0 3.7E-40 7.9E-45 280.2 17.3 227 82-327 31-293 (298)
16 COG1453 Predicted oxidoreducta 100.0 4.7E-36 1E-40 268.7 18.0 244 67-328 19-286 (391)
17 KOG1576|consensus 100.0 8.7E-34 1.9E-38 243.1 21.5 233 67-316 40-310 (342)
18 KOG1577|consensus 99.8 1.3E-20 2.9E-25 167.7 5.8 84 1-85 182-266 (300)
19 COG0656 ARA1 Aldo/keto reducta 99.8 1.4E-20 3.1E-25 167.4 3.2 84 1-87 164-247 (280)
20 PRK11172 dkgB 2,5-diketo-D-glu 99.5 3.8E-14 8.2E-19 128.2 6.2 82 1-86 153-234 (267)
21 KOG1575|consensus 99.4 5E-14 1.1E-18 128.1 4.2 93 1-93 188-314 (336)
22 PRK11565 dkgA 2,5-diketo-D-glu 99.4 2.2E-13 4.7E-18 123.7 7.7 84 1-86 161-244 (275)
23 PRK09912 L-glyceraldehyde 3-ph 99.2 1.4E-11 2.9E-16 115.7 5.0 87 1-87 194-315 (346)
24 PRK10625 tas putative aldo-ket 99.2 1.9E-11 4.2E-16 114.7 5.4 86 1-86 206-321 (346)
25 TIGR01293 Kv_beta voltage-depe 99.2 2.1E-11 4.5E-16 113.1 5.0 87 1-87 177-299 (317)
26 PRK10376 putative oxidoreducta 99.2 3.9E-11 8.4E-16 109.9 5.9 83 1-86 186-270 (290)
27 COG0667 Tas Predicted oxidored 99.2 4.1E-11 8.8E-16 110.7 5.7 90 1-90 178-295 (316)
28 COG4989 Predicted oxidoreducta 99.1 1.3E-10 2.8E-15 100.1 4.6 83 1-86 180-275 (298)
29 PLN02587 L-galactose dehydroge 99.1 1.2E-10 2.5E-15 108.0 4.7 77 11-87 188-279 (314)
30 PRK14863 bifunctional regulato 99.0 5.3E-10 1.2E-14 102.3 5.0 88 1-88 163-266 (292)
31 cd06660 Aldo_ket_red Aldo-keto 98.9 1.1E-09 2.3E-14 100.0 6.1 87 1-87 171-270 (285)
32 PF00248 Aldo_ket_red: Aldo/ke 98.8 1.8E-09 3.9E-14 98.5 2.5 86 1-86 160-265 (283)
33 KOG3023|consensus 98.7 4.8E-08 1E-12 83.6 6.8 133 127-262 73-227 (285)
34 COG1453 Predicted oxidoreducta 96.1 0.0089 1.9E-07 55.2 5.1 71 12-85 187-263 (391)
35 PRK10558 alpha-dehydro-beta-de 89.1 3.3 7.2E-05 37.1 9.3 94 204-312 17-115 (256)
36 PF07021 MetW: Methionine bios 88.6 3 6.5E-05 35.5 8.1 102 151-266 63-170 (193)
37 PRK10128 2-keto-3-deoxy-L-rham 87.3 5.6 0.00012 35.9 9.6 96 204-313 16-115 (267)
38 TIGR03239 GarL 2-dehydro-3-deo 86.7 5.1 0.00011 35.7 9.0 94 204-312 10-108 (249)
39 cd01973 Nitrogenase_VFe_beta_l 83.3 12 0.00027 36.5 10.6 121 102-232 63-193 (454)
40 TIGR02311 HpaI 2,4-dihydroxyhe 80.5 17 0.00036 32.5 9.6 94 204-312 10-108 (249)
41 PF03102 NeuB: NeuB family; I 80.2 19 0.0004 32.0 9.7 74 128-220 113-186 (241)
42 PRK04452 acetyl-CoA decarbonyl 79.1 16 0.00035 33.8 9.2 113 155-281 84-205 (319)
43 TIGR02932 vnfK_nitrog V-contai 78.6 37 0.00079 33.3 12.1 123 102-233 66-198 (457)
44 cd01976 Nitrogenase_MoFe_alpha 76.5 76 0.0016 30.7 16.1 169 103-278 76-271 (421)
45 cd01974 Nitrogenase_MoFe_beta 74.6 42 0.0009 32.6 11.3 119 103-231 63-191 (435)
46 TIGR00381 cdhD CO dehydrogenas 74.4 81 0.0018 30.0 12.7 110 163-281 153-270 (389)
47 cd01965 Nitrogenase_MoFe_beta_ 72.0 98 0.0021 29.9 14.3 120 103-232 59-187 (428)
48 COG1140 NarY Nitrate reductase 71.2 2.6 5.7E-05 39.3 1.9 53 204-257 264-317 (513)
49 TIGR02931 anfK_nitrog Fe-only 66.4 1.4E+02 0.003 29.3 13.6 120 102-231 69-199 (461)
50 KOG1576|consensus 66.3 4.9 0.00011 36.1 2.5 63 12-78 214-295 (342)
51 COG1751 Uncharacterized conser 66.1 73 0.0016 26.1 10.5 102 188-292 12-124 (186)
52 TIGR01278 DPOR_BchB light-inde 65.6 1.2E+02 0.0026 30.1 12.5 163 106-279 66-265 (511)
53 PRK06015 keto-hydroxyglutarate 64.3 65 0.0014 27.7 9.0 60 191-260 42-102 (201)
54 PF02401 LYTB: LytB protein; 63.7 49 0.0011 30.1 8.5 105 204-308 155-274 (281)
55 COG0761 lytB 4-Hydroxy-3-methy 63.6 30 0.00065 31.4 7.0 65 245-309 204-278 (294)
56 TIGR01282 nifD nitrogenase mol 62.9 1.6E+02 0.0035 28.9 14.0 164 104-278 110-306 (466)
57 TIGR00216 ispH_lytB (E)-4-hydr 62.8 60 0.0013 29.5 8.9 111 195-308 147-273 (280)
58 PF01876 RNase_P_p30: RNase P 62.5 25 0.00055 28.5 6.0 122 191-319 14-143 (150)
59 cd01971 Nitrogenase_VnfN_like 59.8 1.7E+02 0.0037 28.3 12.9 162 104-279 65-262 (427)
60 PRK12360 4-hydroxy-3-methylbut 57.6 73 0.0016 29.0 8.5 104 204-308 157-274 (281)
61 COG2200 Rtn c-di-GMP phosphodi 57.5 90 0.002 27.8 9.2 134 110-264 69-215 (256)
62 PRK01045 ispH 4-hydroxy-3-meth 56.8 79 0.0017 29.0 8.7 105 204-308 156-275 (298)
63 PF06506 PrpR_N: Propionate ca 55.8 40 0.00087 28.1 6.3 79 188-276 63-143 (176)
64 PF14871 GHL6: Hypothetical gl 53.3 17 0.00037 29.0 3.4 28 4-31 38-67 (132)
65 PF11242 DUF2774: Protein of u 52.8 17 0.00037 24.7 2.7 24 43-66 15-38 (63)
66 cd03174 DRE_TIM_metallolyase D 52.1 59 0.0013 28.8 7.1 100 148-262 20-135 (265)
67 PRK13352 thiamine biosynthesis 51.8 2.3E+02 0.005 27.3 12.9 80 146-258 143-222 (431)
68 PF10668 Phage_terminase: Phag 51.6 12 0.00026 25.4 1.9 22 43-65 24-45 (60)
69 TIGR00190 thiC thiamine biosyn 50.3 2.4E+02 0.0052 27.1 12.9 33 42-76 14-46 (423)
70 TIGR01182 eda Entner-Doudoroff 49.8 1.6E+02 0.0035 25.4 9.1 132 150-310 23-168 (204)
71 TIGR01862 N2-ase-Ialpha nitrog 49.7 2.6E+02 0.0055 27.2 14.1 165 103-279 95-291 (443)
72 PF00148 Oxidored_nitro: Nitro 49.3 59 0.0013 30.9 7.1 158 106-276 55-243 (398)
73 TIGR02660 nifV_homocitr homoci 48.4 2.4E+02 0.0052 26.6 11.3 95 147-260 23-131 (365)
74 cd01967 Nitrogenase_MoFe_alpha 48.4 2.5E+02 0.0054 26.7 15.4 163 103-277 65-258 (406)
75 COG2185 Sbm Methylmalonyl-CoA 46.3 61 0.0013 26.2 5.5 56 206-266 17-74 (143)
76 PRK05414 urocanate hydratase; 44.7 64 0.0014 31.8 6.2 109 109-238 149-268 (556)
77 TIGR01228 hutU urocanate hydra 44.7 61 0.0013 31.8 6.1 109 109-238 140-259 (545)
78 COG2987 HutU Urocanate hydrata 44.5 48 0.001 32.1 5.3 93 127-238 165-268 (561)
79 PRK14478 nitrogenase molybdenu 44.2 3.2E+02 0.007 26.8 12.7 160 103-275 97-287 (475)
80 PRK08227 autoinducer 2 aldolas 43.1 86 0.0019 28.3 6.6 87 11-103 130-225 (264)
81 PRK06015 keto-hydroxyglutarate 43.1 2.2E+02 0.0047 24.5 8.8 119 188-330 15-146 (201)
82 cd07944 DRE_TIM_HOA_like 4-hyd 43.1 2.2E+02 0.0048 25.5 9.4 107 146-261 19-128 (266)
83 COG2861 Uncharacterized protei 42.9 2.4E+02 0.0053 25.0 10.6 49 165-216 78-130 (250)
84 PRK09284 thiamine biosynthesis 42.5 40 0.00086 33.4 4.6 101 4-120 352-469 (607)
85 PRK05692 hydroxymethylglutaryl 40.6 1.3E+02 0.0029 27.4 7.6 99 147-259 26-137 (287)
86 PRK13958 N-(5'-phosphoribosyl) 40.0 1.1E+02 0.0024 26.4 6.6 79 155-253 16-95 (207)
87 KOG0259|consensus 39.9 1.9E+02 0.0042 27.6 8.4 57 78-137 77-135 (447)
88 TIGR02026 BchE magnesium-proto 39.1 2.7E+02 0.0058 27.5 10.0 118 187-309 223-360 (497)
89 PF11242 DUF2774: Protein of u 39.0 44 0.00096 22.7 3.0 21 268-288 16-36 (63)
90 PRK13796 GTPase YqeH; Provisio 38.6 3.4E+02 0.0075 25.6 10.8 83 128-223 97-180 (365)
91 PLN02444 HMP-P synthase 38.6 51 0.0011 32.8 4.6 101 4-120 357-474 (642)
92 COG1149 MinD superfamily P-loo 37.6 60 0.0013 29.4 4.6 50 214-266 201-250 (284)
93 cd01966 Nitrogenase_NifN_1 Nit 37.3 3.9E+02 0.0084 25.8 12.3 119 103-231 59-188 (417)
94 TIGR02127 pyrF_sub2 orotidine 37.0 3.1E+02 0.0068 24.6 10.9 149 146-307 37-204 (261)
95 TIGR00289 conserved hypothetic 37.0 2E+02 0.0043 25.2 7.7 81 245-329 75-170 (222)
96 cd04743 NPD_PKS 2-Nitropropane 36.5 2.5E+02 0.0053 26.2 8.6 58 204-262 27-89 (320)
97 PF03102 NeuB: NeuB family; I 36.3 1.6E+02 0.0035 26.1 7.2 65 245-310 59-134 (241)
98 PRK00087 4-hydroxy-3-methylbut 36.1 1.8E+02 0.0038 30.0 8.4 104 204-308 154-271 (647)
99 COG2089 SpsE Sialic acid synth 35.7 83 0.0018 29.2 5.3 65 245-310 93-168 (347)
100 cd07939 DRE_TIM_NifV Streptomy 35.7 3.2E+02 0.0069 24.3 11.7 138 146-310 19-176 (259)
101 PLN02363 phosphoribosylanthran 35.2 1.4E+02 0.0029 26.8 6.6 66 157-237 64-130 (256)
102 PF01175 Urocanase: Urocanase; 34.6 1E+02 0.0022 30.5 5.9 108 111-239 141-259 (546)
103 PRK13352 thiamine biosynthesis 34.2 1.4E+02 0.0029 28.8 6.6 32 4-39 202-233 (431)
104 COG0282 ackA Acetate kinase [E 33.9 1.6E+02 0.0035 28.1 6.9 109 196-310 164-291 (396)
105 CHL00076 chlB photochlorophyll 33.9 4.9E+02 0.011 25.9 11.7 163 107-279 67-267 (513)
106 TIGR01182 eda Entner-Doudoroff 33.3 3.2E+02 0.0069 23.6 8.7 119 188-330 19-150 (204)
107 TIGR00190 thiC thiamine biosyn 32.7 47 0.001 31.7 3.3 32 4-39 199-230 (423)
108 PRK14476 nitrogenase molybdenu 32.5 4.8E+02 0.01 25.5 12.0 118 103-230 70-198 (455)
109 COG4626 Phage terminase-like p 32.3 1.7E+02 0.0037 29.3 7.1 74 187-263 411-484 (546)
110 TIGR01861 ANFD nitrogenase iro 31.6 5.4E+02 0.012 25.7 13.1 166 103-278 105-301 (513)
111 COG2089 SpsE Sialic acid synth 30.8 2E+02 0.0043 26.8 6.8 78 128-225 147-225 (347)
112 TIGR01286 nifK nitrogenase mol 30.4 2E+02 0.0044 28.7 7.5 125 102-232 119-252 (515)
113 cd07948 DRE_TIM_HCS Saccharomy 29.8 3.5E+02 0.0076 24.2 8.4 96 147-261 22-131 (262)
114 cd00308 enolase_like Enolase-s 29.7 3.7E+02 0.0079 23.2 8.5 70 192-265 134-206 (229)
115 PLN02746 hydroxymethylglutaryl 29.2 2.5E+02 0.0054 26.4 7.5 100 146-259 67-179 (347)
116 TIGR03569 NeuB_NnaB N-acetylne 28.9 85 0.0018 29.3 4.3 65 245-310 79-154 (329)
117 PF07994 NAD_binding_5: Myo-in 28.6 1.5E+02 0.0033 27.1 5.9 133 145-293 131-273 (295)
118 PRK09613 thiH thiamine biosynt 28.4 2.6E+02 0.0057 27.5 7.8 110 145-266 117-243 (469)
119 PRK02910 light-independent pro 28.1 6.1E+02 0.013 25.3 12.2 161 107-280 67-263 (519)
120 PF14871 GHL6: Hypothetical gl 28.1 52 0.0011 26.2 2.4 21 245-265 47-67 (132)
121 COG0422 ThiC Thiamine biosynth 28.0 84 0.0018 29.8 4.0 46 4-53 200-258 (432)
122 PF00356 LacI: Bacterial regul 27.9 67 0.0015 20.4 2.5 17 44-60 2-18 (46)
123 COG0135 TrpF Phosphoribosylant 27.8 2.7E+02 0.0058 24.1 6.9 131 156-310 18-174 (208)
124 cd08319 Death_RAIDD Death doma 27.8 52 0.0011 23.9 2.2 71 147-235 11-81 (83)
125 PRK01222 N-(5'-phosphoribosyl) 27.7 2.1E+02 0.0046 24.6 6.4 66 156-237 19-85 (210)
126 PRK07114 keto-hydroxyglutarate 27.3 4.2E+02 0.0092 23.1 9.3 102 188-310 26-131 (222)
127 TIGR00676 fadh2 5,10-methylene 27.3 4.6E+02 0.0099 23.5 9.2 135 146-310 73-222 (272)
128 COG5484 Uncharacterized conser 27.2 42 0.00091 29.8 1.9 25 43-68 21-45 (279)
129 TIGR02329 propionate_PrpR prop 27.2 1.9E+02 0.0042 28.9 6.7 70 188-264 83-154 (526)
130 PF08727 P3A: Poliovirus 3A pr 27.0 36 0.00078 22.7 1.1 16 11-26 30-45 (57)
131 cd00423 Pterin_binding Pterin 26.9 4.5E+02 0.0098 23.3 11.7 103 146-262 24-127 (258)
132 cd03466 Nitrogenase_NifN_2 Nit 26.6 5E+02 0.011 25.1 9.4 117 104-230 63-184 (429)
133 cd01968 Nitrogenase_NifE_I Nit 26.5 5.7E+02 0.012 24.4 14.5 164 102-278 63-257 (410)
134 PRK11858 aksA trans-homoaconit 26.1 5.7E+02 0.012 24.2 11.4 100 146-264 25-138 (378)
135 PF11116 DUF2624: Protein of u 26.1 36 0.00078 24.9 1.1 46 11-56 18-72 (85)
136 PF07836 DmpG_comm: DmpG-like 25.7 97 0.0021 21.5 3.1 30 260-289 17-46 (66)
137 PRK07094 biotin synthase; Prov 25.4 4.6E+02 0.0099 24.0 8.7 115 188-309 72-202 (323)
138 TIGR00035 asp_race aspartate r 25.3 3.8E+02 0.0083 23.2 7.7 77 146-227 17-98 (229)
139 cd00740 MeTr MeTr subgroup of 25.1 4.9E+02 0.011 23.1 10.7 102 146-263 26-127 (252)
140 TIGR00290 MJ0570_dom MJ0570-re 25.1 4.7E+02 0.01 22.9 8.2 87 245-336 75-176 (223)
141 TIGR01496 DHPS dihydropteroate 24.7 5E+02 0.011 23.1 11.5 101 146-262 23-125 (257)
142 PF13518 HTH_28: Helix-turn-he 24.6 79 0.0017 19.9 2.5 23 43-66 14-36 (52)
143 TIGR03151 enACPred_II putative 24.2 5.1E+02 0.011 23.8 8.6 56 204-262 35-94 (307)
144 COG2179 Predicted hydrolase of 24.2 4.3E+02 0.0093 22.1 8.0 64 188-282 48-113 (175)
145 COG1168 MalY Bifunctional PLP- 24.0 2E+02 0.0043 27.4 5.7 46 215-260 146-196 (388)
146 PRK08609 hypothetical protein; 23.9 7.6E+02 0.017 25.0 10.5 21 188-210 444-464 (570)
147 PF13380 CoA_binding_2: CoA bi 23.7 3.2E+02 0.007 20.9 6.2 21 245-265 92-112 (116)
148 PRK14477 bifunctional nitrogen 23.6 9.5E+02 0.021 26.0 11.8 118 105-232 551-676 (917)
149 cd03322 rpsA The starvation se 23.5 3.5E+02 0.0075 25.4 7.5 68 192-263 203-273 (361)
150 TIGR00735 hisF imidazoleglycer 23.3 5.2E+02 0.011 22.8 9.2 94 151-258 159-253 (254)
151 PF02817 E3_binding: e3 bindin 23.2 89 0.0019 19.1 2.3 22 38-59 3-24 (39)
152 PRK14457 ribosomal RNA large s 23.2 6.3E+02 0.014 23.7 13.0 147 110-266 164-330 (345)
153 PF01476 LysM: LysM domain; I 23.0 80 0.0017 19.1 2.2 20 40-59 5-24 (44)
154 PRK00730 rnpA ribonuclease P; 22.3 3.3E+02 0.0072 21.9 6.0 44 127-172 46-91 (138)
155 PRK06552 keto-hydroxyglutarate 22.3 1.9E+02 0.0041 25.1 5.0 61 190-260 50-114 (213)
156 TIGR03822 AblA_like_2 lysine-2 22.1 6.3E+02 0.014 23.3 10.5 74 188-265 152-237 (321)
157 COG2102 Predicted ATPases of P 22.1 2E+02 0.0043 25.2 5.0 84 188-279 75-176 (223)
158 cd00739 DHPS DHPS subgroup of 22.0 5.7E+02 0.012 22.8 10.9 93 158-263 35-128 (257)
159 cd00956 Transaldolase_FSA Tran 21.8 5.2E+02 0.011 22.2 9.1 44 282-325 146-195 (211)
160 PF01402 RHH_1: Ribbon-helix-h 21.7 98 0.0021 18.3 2.3 18 42-59 12-29 (39)
161 cd03316 MR_like Mandelate race 21.6 5.5E+02 0.012 23.8 8.5 68 192-263 229-299 (357)
162 PF05690 ThiG: Thiazole biosyn 21.6 5.8E+02 0.013 22.7 11.9 141 145-309 75-221 (247)
163 PRK13602 putative ribosomal pr 21.1 2.1E+02 0.0046 20.5 4.4 46 215-262 15-60 (82)
164 PRK04165 acetyl-CoA decarbonyl 20.9 6E+02 0.013 24.9 8.6 82 163-263 127-209 (450)
165 TIGR03597 GTPase_YqeH ribosome 20.8 7E+02 0.015 23.4 9.4 82 128-223 91-174 (360)
166 PF01081 Aldolase: KDPG and KH 20.7 1.1E+02 0.0024 26.2 3.2 45 208-260 61-106 (196)
167 PRK15424 propionate catabolism 20.7 3E+02 0.0066 27.6 6.7 71 188-265 93-165 (538)
168 PRK07945 hypothetical protein; 20.6 6.9E+02 0.015 23.2 14.3 37 161-211 191-227 (335)
169 TIGR03586 PseI pseudaminic aci 20.5 1.6E+02 0.0034 27.5 4.4 65 245-310 80-155 (327)
170 PRK07114 keto-hydroxyglutarate 20.5 5.8E+02 0.013 22.3 10.0 87 149-260 29-117 (222)
171 COG0773 MurC UDP-N-acetylmuram 20.4 77 0.0017 30.9 2.4 47 245-291 80-132 (459)
172 PRK07535 methyltetrahydrofolat 20.4 6.2E+02 0.013 22.6 11.3 99 146-262 25-123 (261)
173 PF01081 Aldolase: KDPG and KH 20.3 1.5E+02 0.0033 25.3 4.0 119 189-331 20-151 (196)
174 cd03319 L-Ala-DL-Glu_epimerase 20.3 5.8E+02 0.013 23.2 8.3 70 192-265 217-289 (316)
175 PRK13803 bifunctional phosphor 20.2 8.9E+02 0.019 24.7 10.1 88 157-259 20-108 (610)
No 1
>COG0656 ARA1 Aldo/keto reductases, related to diketogulonate reductase [General function prediction only]
Probab=100.00 E-value=2.8e-59 Score=414.12 Aligned_cols=237 Identities=43% Similarity=0.701 Sum_probs=221.9
Q ss_pred HHHHHHHHhhhccCcccccccccccCHHHHHHHHHhhcccCCCCCCceEEEeccCCCCCCCHHHHHHHHHHHHHhcCCCc
Q psy15666 84 AQVLLRWALQENFCYRAIDTAQEYGNEASIGRALKVLLPKFNLKREDIFITSKLSPQYNGNADQVKSLVAQTLKDLGTTY 163 (339)
Q Consensus 84 ~~~~~~~al~~~~g~~~iDta~~y~~E~~lG~al~~~~~~~~~~R~~~~i~tK~~~~~~~~~~~~~~~~~~sL~~L~~d~ 163 (339)
+...+..|++ .|+|+||||..||||+.+|+|+++. +++|+++||+||+|+...++ +.+.+++++||++||+||
T Consensus 30 ~~~av~~Al~--~Gyr~IDTA~~YgnE~~VG~aI~~s----~v~ReelFittKvw~~~~~~-~~~~~a~e~Sl~rLg~dy 102 (280)
T COG0656 30 AVRAVRAALE--LGYRLIDTAEIYGNEEEVGEAIKES----GVPREELFITTKVWPSDLGY-DETLKALEASLKRLGLDY 102 (280)
T ss_pred HHHHHHHHHH--hCcceEecHhHhcCHHHHHHHHHhc----CCCHHHeEEEeecCCccCCc-chHHHHHHHHHHHhCCCc
Confidence 7789999999 9999999999999999999999986 89999999999999998888 999999999999999999
Q ss_pred ccEEEeecCCCCCCCCCCCcccccHHHHHHHHHHhhCCCCCCccEEEecCCCHHHHHHHHHcCCCceeEeccccCCCCCC
Q psy15666 164 LDLFLIHWPGTFGVDSSSPQQISNRHTLWNALTELYNPNNGPLKSIGVSNYTAKHLVNLIQNSKVVPAVNQVEFHPHFLQ 243 (339)
Q Consensus 164 iDl~~lH~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~G~ir~iGvS~~~~~~l~~~~~~~~~~~~~~q~~~~~~~~~ 243 (339)
||||+||||... ... ...++|++||+++++ |+||+||||||+.++++++++..++.|++||++||++.++
T Consensus 103 vDLyLiHwP~~~------~~~--~~~etw~alE~l~~~--G~ir~IGVSNF~~~~L~~l~~~~~~~p~~NQIe~hp~~~q 172 (280)
T COG0656 103 VDLYLIHWPVPN------KYV--VIEETWKALEELVDE--GLIRAIGVSNFGVEHLEELLSLAKVKPAVNQIEYHPYLRQ 172 (280)
T ss_pred eeEEEECCCCCc------cCc--cHHHHHHHHHHHHhc--CCccEEEeeCCCHHHHHHHHHhcCCCCceEEEEeccCCCc
Confidence 999999999321 011 168999999999999 9999999999999999999999999999999999999999
Q ss_pred cHHHHHHHHhCCceEEEecchhH--------HHHHHHHHcCCCHHHHHHHHHhhCCcEEecCCCCHHHHHHhhcC-CCCC
Q psy15666 244 PQELIDVCNQNKIALQAYASLGS--------TSTQIAKVHSVSPAQVLLRWALQENFLIIPKSVTPERIVQNIAL-DFEL 314 (339)
Q Consensus 244 ~~~l~~~~~~~gi~v~~~~~l~~--------~l~~la~~~~~s~~~~al~~~l~~~~~~i~g~~~~~~l~enl~~-~~~L 314 (339)
.+++++|+++||.+++||||++ .+.+||++||.|++|++|||++++|+++||++++++|++||+++ ++.|
T Consensus 173 -~el~~~~~~~gI~v~AysPL~~g~~l~~~~~l~~Ia~k~g~t~AQv~L~W~i~~gv~~Ipks~~~~ri~eN~~~~~f~L 251 (280)
T COG0656 173 -PELLPFCQRHGIAVEAYSPLAKGGKLLDNPVLAEIAKKYGKTPAQVALRWHIQRGVIVIPKSTTPERIRENLAAFDFEL 251 (280)
T ss_pred -HHHHHHHHHcCCEEEEECCcccccccccChHHHHHHHHhCCCHHHHHHHHHHhCCcEEecCCCCHHHHHHHHhhhcCCC
Confidence 6799999999999999999994 78999999999999999999999999999999999999999999 9999
Q ss_pred CHHHHHHHhcCCCCC---CcccCCCCC
Q psy15666 315 SPEEVKAIENIPNKQ---KYCWNPDKI 338 (339)
Q Consensus 315 ~~~~~~~l~~~~~~~---r~~~~~~~~ 338 (339)
|++||++|+++.... +..++|..+
T Consensus 252 s~ed~~~i~~l~~~~~~~~~~~~p~~~ 278 (280)
T COG0656 252 SEEDMAAIDALDRGYGRTRVGPDPEFF 278 (280)
T ss_pred CHHHHHHHHhhccccCcccccCCcccc
Confidence 999999999999987 567787643
No 2
>KOG1577|consensus
Probab=100.00 E-value=7.2e-58 Score=404.97 Aligned_cols=256 Identities=41% Similarity=0.668 Sum_probs=231.1
Q ss_pred hhhhhccccccCCchHHHHHHHHhhhccCcccccccccccCHHHHHHHHHhhcccCCCCCCceEEEeccCCCCCCCHHHH
Q psy15666 69 CKFIKLYHKVHSVSPAQVLLRWALQENFCYRAIDTAQEYGNEASIGRALKVLLPKFNLKREDIFITSKLSPQYNGNADQV 148 (339)
Q Consensus 69 ~~i~~s~~~~~~~~n~~~~~~~al~~~~g~~~iDta~~y~~E~~lG~al~~~~~~~~~~R~~~~i~tK~~~~~~~~~~~~ 148 (339)
.++.|-..-......+..++..|++ .|||+||||..|+||..+|+||++.+.+++++|+++||+||+|+..+.+ +.+
T Consensus 15 mP~iGlGTw~~~~~~~~~aV~~Al~--~GYRHIDtA~~Y~NE~evG~aik~~i~~~~v~RediFiTSKlw~~~~~~-~~v 91 (300)
T KOG1577|consen 15 MPIIGLGTWQSPPGQVAEAVKAAIK--AGYRHIDTAHVYGNEKEVGEAIKELLAEGGVKREDIFITSKLWPTDHAP-ELV 91 (300)
T ss_pred cceeeeEecccChhhHHHHHHHHHH--hCcceeechhhhCChHHHHHHHHHHhhhCCcchhhheeeeccCccccCh-hhH
Confidence 3444444444456778899999999 9999999999999999999999999999999999999999999998788 999
Q ss_pred HHHHHHHHHhcCCCcccEEEeecCCCCCC----C--CCCCcccccHHHHHHHHHHhhCCCCCCccEEEecCCCHHHHHHH
Q psy15666 149 KSLVAQTLKDLGTTYLDLFLIHWPGTFGV----D--SSSPQQISNRHTLWNALTELYNPNNGPLKSIGVSNYTAKHLVNL 222 (339)
Q Consensus 149 ~~~~~~sL~~L~~d~iDl~~lH~~~~~~~----~--~~~~~~~~~~~~~~~~l~~l~~~~~G~ir~iGvS~~~~~~l~~~ 222 (339)
+.++++||++||+||+|||++|||..... + ........+..++|++||+++++ |++|+||||||+..+++++
T Consensus 92 ~~al~~sLk~L~ldYvDLyLiH~P~~~k~~~~~~~~~~~~~~~~~~~~tW~amE~~~~~--Gl~rsIGVSNF~~~~le~l 169 (300)
T KOG1577|consen 92 EKALEKSLKKLQLDYVDLYLIHWPVAFKDSFPKDENGKVNYDDVDRIETWKAMEKLVDE--GLVRSIGVSNFNIKQLEEL 169 (300)
T ss_pred HHHHHHHHHHhChhhhheeeEecccccCCCCCcccccccccccchHHHHHHHHHHHHHc--CCceEeeeecCCHHHHHHH
Confidence 99999999999999999999999943311 0 00001112488999999999999 9999999999999999999
Q ss_pred HHcCCCceeEeccccCCCCCCcHHHHHHHHhCCceEEEecchhH-----------HHHHHHHHcCCCHHHHHHHHHhhCC
Q psy15666 223 IQNSKVVPAVNQVEFHPHFLQPQELIDVCNQNKIALQAYASLGS-----------TSTQIAKVHSVSPAQVLLRWALQEN 291 (339)
Q Consensus 223 ~~~~~~~~~~~q~~~~~~~~~~~~l~~~~~~~gi~v~~~~~l~~-----------~l~~la~~~~~s~~~~al~~~l~~~ 291 (339)
+..+.++|.++|+++||+.++ .+++++|+++||.+.||||||+ .+.+||++|+.||+|++|||++++|
T Consensus 170 l~~~ki~P~vnQvE~HP~~~Q-~~L~~fCk~~~I~v~AYSpLg~~~~~~~ll~~~~l~~iA~K~~kt~aQIlLrw~~q~g 248 (300)
T KOG1577|consen 170 LNLAKIKPAVNQVECHPYLQQ-KKLVEFCKSKGIVVTAYSPLGSPGRGSDLLEDPVLKEIAKKYNKTPAQILLRWALQRG 248 (300)
T ss_pred HhcCCCCCccceeeccCCcCh-HHHHHHHhhCCcEEEEecCCCCCCCccccccCHHHHHHHHHhCCCHHHHHHHHHHhCC
Confidence 999999999999999999999 8899999999999999999995 6889999999999999999999999
Q ss_pred cEEecCCCCHHHHHHhhcC-CCCCCHHHHHHHhcCCCCCC
Q psy15666 292 FLIIPKSVTPERIVQNIAL-DFELSPEEVKAIENIPNKQK 330 (339)
Q Consensus 292 ~~~i~g~~~~~~l~enl~~-~~~L~~~~~~~l~~~~~~~r 330 (339)
++|||.+++++||+||+.+ +|.||++|++.|+.+....|
T Consensus 249 ~~vipKS~~~~Ri~eN~~vfdf~Lt~ed~~~i~~~~~~~r 288 (300)
T KOG1577|consen 249 VSVIPKSSNPERIKENFKVFDFELTEEDMKKLDSLNSNER 288 (300)
T ss_pred cEEEeccCCHHHHHHHHhhccccCCHHHHHHHhhccccce
Confidence 9999999999999999999 99999999999999988887
No 3
>PRK11172 dkgB 2,5-diketo-D-gluconate reductase B; Provisional
Probab=100.00 E-value=3.1e-50 Score=363.68 Aligned_cols=236 Identities=31% Similarity=0.517 Sum_probs=212.1
Q ss_pred chHHHHHHHHhhhccCcccccccccccCHHHHHHHHHhhcccCCCCCCceEEEeccCCCCCCCHHHHHHHHHHHHHhcCC
Q psy15666 82 SPAQVLLRWALQENFCYRAIDTAQEYGNEASIGRALKVLLPKFNLKREDIFITSKLSPQYNGNADQVKSLVAQTLKDLGT 161 (339)
Q Consensus 82 ~n~~~~~~~al~~~~g~~~iDta~~y~~E~~lG~al~~~~~~~~~~R~~~~i~tK~~~~~~~~~~~~~~~~~~sL~~L~~ 161 (339)
+++...+..+++ .|+++||||+.||+|+.+|++|++. +++|+++||+||+++...++ +.+++++++||+|||+
T Consensus 16 ~~~~~~i~~A~~--~Gi~~~DTA~~Yg~E~~lG~al~~~----~~~R~~v~i~TK~~~~~~~~-~~~~~~~~~SL~rL~~ 88 (267)
T PRK11172 16 QVVIDSVKTALE--LGYRAIDTAQIYDNEAAVGQAIAES----GVPRDELFITTKIWIDNLAK-DKLIPSLKESLQKLRT 88 (267)
T ss_pred HHHHHHHHHHHH--cCCCEEEccchhCCHHHHHHHHHHc----CCChhHeEEEEEeCCCCCCH-HHHHHHHHHHHHHhCC
Confidence 457788999999 9999999999999999999999965 66899999999997665556 8999999999999999
Q ss_pred CcccEEEeecCCCCCCCCCCCcccccHHHHHHHHHHhhCCCCCCccEEEecCCCHHHHHHHHHcCCC-ceeEeccccCCC
Q psy15666 162 TYLDLFLIHWPGTFGVDSSSPQQISNRHTLWNALTELYNPNNGPLKSIGVSNYTAKHLVNLIQNSKV-VPAVNQVEFHPH 240 (339)
Q Consensus 162 d~iDl~~lH~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~G~ir~iGvS~~~~~~l~~~~~~~~~-~~~~~q~~~~~~ 240 (339)
||||+|++|+|+.. ...+ .+++|++|++++++ ||||+||||||+.+++.++++..+. +++++|++||++
T Consensus 89 d~iDl~~lH~~~~~------~~~~--~~~~~~~l~~l~~~--Gkir~iGvSn~~~~~l~~~~~~~~~~~~~~~Q~~~~~~ 158 (267)
T PRK11172 89 DYVDLTLIHWPSPN------DEVS--VEEFMQALLEAKKQ--GLTREIGISNFTIALMKQAIAAVGAENIATNQIELSPY 158 (267)
T ss_pred CceEEEEeCCCCCC------CCCC--HHHHHHHHHHHHHC--CCCCEEEEccCCHHHHHHHHHhcCCCCCeEEeeecCCC
Confidence 99999999998321 1123 78999999999999 9999999999999999999886644 679999999999
Q ss_pred CCCcHHHHHHHHhCCceEEEecchhH-------HHHHHHHHcCCCHHHHHHHHHhhCCcEEecCCCCHHHHHHhhcC-CC
Q psy15666 241 FLQPQELIDVCNQNKIALQAYASLGS-------TSTQIAKVHSVSPAQVLLRWALQENFLIIPKSVTPERIVQNIAL-DF 312 (339)
Q Consensus 241 ~~~~~~l~~~~~~~gi~v~~~~~l~~-------~l~~la~~~~~s~~~~al~~~l~~~~~~i~g~~~~~~l~enl~~-~~ 312 (339)
.+. .+++++|+++||++++|+||++ .+.++|+++|.|++|+||+|++++|+++|||+++++|+++|+++ ++
T Consensus 159 ~~~-~~ll~~~~~~gi~v~a~spl~~G~~~~~~~l~~~a~~~~~s~aqval~w~l~~~~~~i~g~~~~~~l~~n~~~~~~ 237 (267)
T PRK11172 159 LQN-RKVVAFAKEHGIHVTSYMTLAYGKVLKDPVIARIAAKHNATPAQVILAWAMQLGYSVIPSSTKRENLASNLLAQDL 237 (267)
T ss_pred CCc-HHHHHHHHHCCCEEEEECCCCCCcccCCHHHHHHHHHhCCCHHHHHHHHHHhCCCEeecCCCCHHHHHHHHhhcCC
Confidence 987 7999999999999999999986 78899999999999999999999999999999999999999999 99
Q ss_pred CCCHHHHHHHhcCCCCCCcccCCC
Q psy15666 313 ELSPEEVKAIENIPNKQKYCWNPD 336 (339)
Q Consensus 313 ~L~~~~~~~l~~~~~~~r~~~~~~ 336 (339)
+||++++++|+++.++.+. ++|.
T Consensus 238 ~L~~~~~~~i~~~~~~~~~-~~~~ 260 (267)
T PRK11172 238 QLDAEDMAAIAALDRNGRL-VSPE 260 (267)
T ss_pred CcCHHHHHHHhhhccCCcc-CCcc
Confidence 9999999999999877653 3443
No 4
>PRK11565 dkgA 2,5-diketo-D-gluconate reductase A; Provisional
Probab=100.00 E-value=3.7e-48 Score=351.21 Aligned_cols=237 Identities=35% Similarity=0.637 Sum_probs=215.9
Q ss_pred CchHHHHHHHHhhhccCcccccccccccCHHHHHHHHHhhcccCCCCCCceEEEeccCCCCCCCHHHHHHHHHHHHHhcC
Q psy15666 81 VSPAQVLLRWALQENFCYRAIDTAQEYGNEASIGRALKVLLPKFNLKREDIFITSKLSPQYNGNADQVKSLVAQTLKDLG 160 (339)
Q Consensus 81 ~~n~~~~~~~al~~~~g~~~iDta~~y~~E~~lG~al~~~~~~~~~~R~~~~i~tK~~~~~~~~~~~~~~~~~~sL~~L~ 160 (339)
.+++...+..+++ .|+++||||+.||+|+.+|++|++. +++|++++|+||+++. +. +.+++++++||++||
T Consensus 27 ~~~~~~~l~~A~~--~Gi~~~DTA~~Yg~E~~lG~al~~~----~~~R~~~~i~tK~~~~--~~-~~~~~~~~~sL~rL~ 97 (275)
T PRK11565 27 NEEVITAIHKALE--VGYRSIDTAAIYKNEEGVGKALKEA----SVAREELFITTKLWND--DH-KRPREALEESLKKLQ 97 (275)
T ss_pred HHHHHHHHHHHHH--hCCCEEEchhhhCCHHHHHHHHHHc----CCCHHHEEEEEEecCc--ch-HHHHHHHHHHHHHhC
Confidence 3567788999999 9999999999999999999999965 6679999999999753 34 789999999999999
Q ss_pred CCcccEEEeecCCCCCCCCCCCcccccHHHHHHHHHHhhCCCCCCccEEEecCCCHHHHHHHHHcCCCceeEeccccCCC
Q psy15666 161 TTYLDLFLIHWPGTFGVDSSSPQQISNRHTLWNALTELYNPNNGPLKSIGVSNYTAKHLVNLIQNSKVVPAVNQVEFHPH 240 (339)
Q Consensus 161 ~d~iDl~~lH~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~G~ir~iGvS~~~~~~l~~~~~~~~~~~~~~q~~~~~~ 240 (339)
+||||+|++|+|+ +.. ....++|++|++|+++ |+||+||||||+++++.+++....++|.++|++|+++
T Consensus 98 ~d~iDl~~lH~p~--------~~~-~~~~~~~~~l~~l~~~--G~ir~iGvSn~~~~~l~~~~~~~~v~~~~~Q~~~~~~ 166 (275)
T PRK11565 98 LDYVDLYLMHWPV--------PAI-DHYVEAWKGMIELQKE--GLIKSIGVCNFQIHHLQRLIDETGVTPVINQIELHPL 166 (275)
T ss_pred CCceEEEEecCCC--------CCc-CcHHHHHHHHHHHHHc--CCeeEEeeccCCHHHHHHHHHhCCCCceeeeeecCCc
Confidence 9999999999983 221 1267999999999999 9999999999999999999987778899999999999
Q ss_pred CCCcHHHHHHHHhCCceEEEecchhH---------HHHHHHHHcCCCHHHHHHHHHhhCCcEEecCCCCHHHHHHhhcC-
Q psy15666 241 FLQPQELIDVCNQNKIALQAYASLGS---------TSTQIAKVHSVSPAQVLLRWALQENFLIIPKSVTPERIVQNIAL- 310 (339)
Q Consensus 241 ~~~~~~l~~~~~~~gi~v~~~~~l~~---------~l~~la~~~~~s~~~~al~~~l~~~~~~i~g~~~~~~l~enl~~- 310 (339)
.+. .+++++|+++||++++|+||++ .+.++|+++|+|++|+||||+++++.++|||+++++|+++|+++
T Consensus 167 ~~~-~~~~~~~~~~~i~~~a~spl~~G~~~~~~~~~l~~ia~~~g~s~aq~aL~w~l~~~~~~I~g~~~~~~i~~n~~a~ 245 (275)
T PRK11565 167 MQQ-RQLHAWNATHKIQTESWSPLAQGGKGVFDQKVIRDLADKYGKTPAQIVIRWHLDSGLVVIPKSVTPSRIAENFDVF 245 (275)
T ss_pred cch-HHHHHHHHHCCCEEEEEccCCCCCcccccCHHHHHHHHHhCCCHHHHHHHHHHcCCCEeeCCCCCHHHHHHHHhcc
Confidence 987 7899999999999999999952 89999999999999999999999999999999999999999999
Q ss_pred CCCCCHHHHHHHhcCCCCCCcccCCCCC
Q psy15666 311 DFELSPEEVKAIENIPNKQKYCWNPDKI 338 (339)
Q Consensus 311 ~~~L~~~~~~~l~~~~~~~r~~~~~~~~ 338 (339)
+++|+++++++|+++....|+.++|..+
T Consensus 246 ~~~Ls~~~~~~i~~~~~~~~~~~~~~~~ 273 (275)
T PRK11565 246 DFRLDKDELGEIAKLDQGKRLGPDPDQF 273 (275)
T ss_pred CCCcCHHHHHHHHhhcccCCcCCCcccc
Confidence 9999999999999999988888777654
No 5
>COG0667 Tas Predicted oxidoreductases (related to aryl-alcohol dehydrogenases) [Energy production and conversion]
Probab=100.00 E-value=2.4e-46 Score=344.13 Aligned_cols=228 Identities=32% Similarity=0.473 Sum_probs=204.5
Q ss_pred CchHHHHHHHHhhhccCccccccccccc---CHHHHHHHHHhhcccCCCCCCceEEEeccCCCCC---------CCHHHH
Q psy15666 81 VSPAQVLLRWALQENFCYRAIDTAQEYG---NEASIGRALKVLLPKFNLKREDIFITSKLSPQYN---------GNADQV 148 (339)
Q Consensus 81 ~~n~~~~~~~al~~~~g~~~iDta~~y~---~E~~lG~al~~~~~~~~~~R~~~~i~tK~~~~~~---------~~~~~~ 148 (339)
.+.+..++..+++ .|+++||||+.|| ||++||++|+.. +. |++++|+||++.... ..++++
T Consensus 32 ~~~a~~il~~A~d--~Gin~~DTA~~Yg~g~sE~ilG~~l~~~----~~-Rd~vvIaTK~g~~~~~~~~~~~~~~s~~~i 104 (316)
T COG0667 32 EAEAIEILDAALD--AGINFFDTADVYGDGRSEEILGEALKER----GR-RDKVVIATKVGYRPGDPGPNGVFGLSRDHI 104 (316)
T ss_pred hhHHHHHHHHHHH--cCCCEEECccccCCCchHHHHHHHHhcc----CC-CCeEEEEEeeccCCCCCCCCccCCCCHHHH
Confidence 3455569999999 9999999999999 699999999965 43 899999999975431 125999
Q ss_pred HHHHHHHHHhcCCCcccEEEeecCCCCCCCCCCCcccccHHHHHHHHHHhhCCCCCCccEEEecCCCHHHHHHHHHcCCC
Q psy15666 149 KSLVAQTLKDLGTTYLDLFLIHWPGTFGVDSSSPQQISNRHTLWNALTELYNPNNGPLKSIGVSNYTAKHLVNLIQNSKV 228 (339)
Q Consensus 149 ~~~~~~sL~~L~~d~iDl~~lH~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~G~ir~iGvS~~~~~~l~~~~~~~~~ 228 (339)
+++++.||+||||||||||++|+| |+..+ .++++++|.+|+++ |+||++|+||++.+++.++.+.+ .
T Consensus 105 ~~~v~~SL~RLgtd~IDl~~iH~~--------d~~~p--~~e~~~aL~~l~~~--G~ir~iG~S~~~~~~i~~a~~~~-~ 171 (316)
T COG0667 105 RRAVEASLKRLGTDYIDLYQLHRP--------DPETP--IEETLEALDELVRE--GKIRYIGVSNYSAEQIAEALAVA-A 171 (316)
T ss_pred HHHHHHHHHHhCCCceeEEEeCCC--------CCCCC--HHHHHHHHHHHHHc--CCeeEEEecCCCHHHHHHHHHhc-C
Confidence 999999999999999999999999 56666 88999999999999 99999999999999999999886 5
Q ss_pred ceeEeccccCCCCCCc-HHHHHHHHhCCceEEEecchhH-----------------------------------HHHHHH
Q psy15666 229 VPAVNQVEFHPHFLQP-QELIDVCNQNKIALQAYASLGS-----------------------------------TSTQIA 272 (339)
Q Consensus 229 ~~~~~q~~~~~~~~~~-~~l~~~~~~~gi~v~~~~~l~~-----------------------------------~l~~la 272 (339)
+++++|.+||++.++. .+++++|+++||++++|+||++ .+..+|
T Consensus 172 ~~~~~Q~~ynl~~R~~e~~l~~~~~~~gi~~~~~spla~G~Ltgk~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~l~~~a 251 (316)
T COG0667 172 PIDSLQPEYNLLERDAEKELLPLCREEGIGLLAYSPLASGLLTGKYLPGPEGSRASELPRFQRELTERGLAILRALEELA 251 (316)
T ss_pred CceeecccCccccccchhHHHHHHHHcCCeEEEecCccccccCCCcCCCcchhhccccccchhhhhHHHHHHHHHHHHHH
Confidence 6799999999999763 5699999999999999999986 277899
Q ss_pred HHcCCCHHHHHHHHHhhCCc--EEecCCCCHHHHHHhhcC-CCCCCHHHHHHHhcCCCC
Q psy15666 273 KVHSVSPAQVLLRWALQENF--LIIPKSVTPERIVQNIAL-DFELSPEEVKAIENIPNK 328 (339)
Q Consensus 273 ~~~~~s~~~~al~~~l~~~~--~~i~g~~~~~~l~enl~~-~~~L~~~~~~~l~~~~~~ 328 (339)
+++|.|++|+||+|++++|. ++|+|+++++||++|+++ +..|+++++++|++....
T Consensus 252 ~~~g~t~aq~ALawvl~~~~v~~~I~Ga~~~~qL~en~~A~~~~L~~~~~~~l~~~~~~ 310 (316)
T COG0667 252 KELGATPAQVALAWVLAQPGVTSPIVGASKAEQLEENLAALDIKLSEEELAALDEISAE 310 (316)
T ss_pred HHhCCCHHHHHHHHHHhCCCCceEeecCCCHHHHHHHHHHhcCCCCHHHHHHHHHHhhh
Confidence 99999999999999999974 599999999999999999 889999999999987654
No 6
>KOG1575|consensus
Probab=100.00 E-value=9e-46 Score=333.88 Aligned_cols=234 Identities=27% Similarity=0.399 Sum_probs=214.8
Q ss_pred cCCchHHHHHHHHhhhccCccccccccccc---CHHHHHHHHHhhcccCCCCCCceEEEeccCCCC------CCCHHHHH
Q psy15666 79 HSVSPAQVLLRWALQENFCYRAIDTAQEYG---NEASIGRALKVLLPKFNLKREDIFITSKLSPQY------NGNADQVK 149 (339)
Q Consensus 79 ~~~~n~~~~~~~al~~~~g~~~iDta~~y~---~E~~lG~al~~~~~~~~~~R~~~~i~tK~~~~~------~~~~~~~~ 149 (339)
.+++++..++..+++ .|+++||||+.|| ||..+|++|+++ +.+|++++|+||++... ..++..+.
T Consensus 41 ~~~e~a~~~m~~a~e--~Gin~fDtAe~Yg~~~~E~llg~~i~~~----~~~R~~vviaTK~~~~~~~~~~~G~~~~~i~ 114 (336)
T KOG1575|consen 41 IDKEEAFELLDHAYE--AGINFFDTAEVYGNGQSEELLGEFIKSR----GWRRDKVVIATKFGFDYGGETPRGLSRKHII 114 (336)
T ss_pred CCHHHHHHHHHHHHH--cCCCEEehhhhcCCcccHHHHHHHHHhc----CCcCCcEEEEEEEeccCCCcCCCCCcHHHHH
Confidence 577888899999999 9999999999999 599999999987 77899999999997442 12347889
Q ss_pred HHHHHHHHhcCCCcccEEEeecCCCCCCCCCCCcccccHHHHHHHHHHhhCCCCCCccEEEecCCCHHHHHHHHHcCCCc
Q psy15666 150 SLVAQTLKDLGTTYLDLFLIHWPGTFGVDSSSPQQISNRHTLWNALTELYNPNNGPLKSIGVSNYTAKHLVNLIQNSKVV 229 (339)
Q Consensus 150 ~~~~~sL~~L~~d~iDl~~lH~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~G~ir~iGvS~~~~~~l~~~~~~~~~~ 229 (339)
+.++.||+|||+|||||||+||+ |+..+ +++++++|..++++ |+|||||+|+++++++.++...+.++
T Consensus 115 ~~~~~s~~rl~~~~IDl~q~Hr~--------D~~~p--iee~m~aL~~lve~--Gki~yiGlSe~sa~~I~~a~~~~~~p 182 (336)
T KOG1575|consen 115 EGVRDSLRRLQTDYIDLLQVHRW--------DPMVP--IEETMRALTDLVEQ--GKIRYWGLSEWSAEEIREAHAVAPIP 182 (336)
T ss_pred HHHHHHHHhcCCCeeEEEEEccc--------CCCCC--HHHHHHHHHHHHhc--CceEEEEeccCCHHHHHHHHHhcCCC
Confidence 99999999999999999999999 77788 99999999999999 99999999999999999999999888
Q ss_pred eeEeccccCCCCCCc--HHHHHHHHhCCceEEEecchhH----------------------------------------H
Q psy15666 230 PAVNQVEFHPHFLQP--QELIDVCNQNKIALQAYASLGS----------------------------------------T 267 (339)
Q Consensus 230 ~~~~q~~~~~~~~~~--~~l~~~~~~~gi~v~~~~~l~~----------------------------------------~ 267 (339)
++.+|++||++.+.. .+++++|++.||++++||||++ .
T Consensus 183 ~~s~Q~eysl~~Rd~ee~~i~~~c~~~Gi~li~ysPL~~G~Ltgk~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 262 (336)
T KOG1575|consen 183 IVAVQVEYSLLSRDKEERGIIPLCRELGIGLIAWSPLGRGLLTGKYKLGEDSRNGDKRFQFLGLSPQTEEGDKQKPILEA 262 (336)
T ss_pred ceEeeeechhhhcchhhhhHHHHHHHcCcceEEecccccceeccCcccccccccccccccccccccccchhhhHHHHHHH
Confidence 999999999999983 5699999999999999999997 3
Q ss_pred HHHHHHHcCCCHHHHHHHHHhhCC--cEEecCCCCHHHHHHhhcC-CCCCCHHHHHHHhcCCCCCC
Q psy15666 268 STQIAKVHSVSPAQVLLRWALQEN--FLIIPKSVTPERIVQNIAL-DFELSPEEVKAIENIPNKQK 330 (339)
Q Consensus 268 l~~la~~~~~s~~~~al~~~l~~~--~~~i~g~~~~~~l~enl~~-~~~L~~~~~~~l~~~~~~~r 330 (339)
+.++|+++|+|++|+||+|+++++ +++|||+++++|++||+++ ...|+++++..|++......
T Consensus 263 ~~~iA~k~g~T~~qlALawv~~~~~v~~pIpG~s~ve~l~eni~Al~~~Lt~e~~~~l~~~~~~~~ 328 (336)
T KOG1575|consen 263 LSKIAEKHGCTVPQLALAWVLSNGKVSSPIPGASKIEQLKENIGALSVKLTPEEIKELEEIIDKIL 328 (336)
T ss_pred HHHHHHHcCCCHHHHHHHHHHHhCCCEEecCCCCcHHHHHHHHhhhhccCCHHHHHHHHHhhcccc
Confidence 779999999999999999999997 5699999999999999999 99999999999998877643
No 7
>TIGR01293 Kv_beta voltage-dependent potassium channel beta subunit, animal. Plant beta subunits and their closely related bacterial homologs (in Deinococcus radiudurans, Xylella fastidiosa, etc.) appear more closely related to each other than to animal forms. However, the bacterial species lack convincing counterparts the Kv alpha subunit and the Kv beta homolog may serve as an enzyme. Cutoffs are set for this model such that yeast and plant forms and bacterial close homologs score between trusted and noise cutoffs.
Probab=100.00 E-value=5.6e-45 Score=337.37 Aligned_cols=227 Identities=20% Similarity=0.298 Sum_probs=197.8
Q ss_pred CCchHHHHHHHHhhhccCccccccccccc---CHHHHHHHHHhhcccCCCCCCceEEEeccCCC-------CCCCHHHHH
Q psy15666 80 SVSPAQVLLRWALQENFCYRAIDTAQEYG---NEASIGRALKVLLPKFNLKREDIFITSKLSPQ-------YNGNADQVK 149 (339)
Q Consensus 80 ~~~n~~~~~~~al~~~~g~~~iDta~~y~---~E~~lG~al~~~~~~~~~~R~~~~i~tK~~~~-------~~~~~~~~~ 149 (339)
..+++..++..+++ .|+++||||+.|| ||+.+|++|++. +++|++++|+||++.. ..++ +.++
T Consensus 27 ~~~~a~~~l~~al~--~Gi~~~DTA~~Yg~g~sE~~lG~~l~~~----~~~R~~~~iaTK~~~~~~~~~~~~~~~-~~i~ 99 (317)
T TIGR01293 27 SDEMAEQLLTLAYE--NGINLFDTAEVYAAGKAEVVLGNILKKK----GWRRSSYVITTKIFWGGKAETERGLSR-KHII 99 (317)
T ss_pred CHHHHHHHHHHHHH--cCCCeEECccccCCCccHHHHHHHHHhc----CCCcccEEEEeeeccCCCCCCCCCCCH-HHHH
Confidence 44667889999999 9999999999998 699999999964 5579999999998532 1234 8999
Q ss_pred HHHHHHHHhcCCCcccEEEeecCCCCCCCCCCCcccccHHHHHHHHHHhhCCCCCCccEEEecCCCHHHHHHHHHcC---
Q psy15666 150 SLVAQTLKDLGTTYLDLFLIHWPGTFGVDSSSPQQISNRHTLWNALTELYNPNNGPLKSIGVSNYTAKHLVNLIQNS--- 226 (339)
Q Consensus 150 ~~~~~sL~~L~~d~iDl~~lH~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~G~ir~iGvS~~~~~~l~~~~~~~--- 226 (339)
+++++||+|||+||||+|++|+| ++..+ .+++|++|++|+++ ||||+||+|||+.+++.++...+
T Consensus 100 ~~~~~SL~rL~td~iDl~~lH~~--------~~~~~--~~e~~~aL~~l~~~--G~ir~iGvSn~~~~~l~~~~~~~~~~ 167 (317)
T TIGR01293 100 EGLKASLERLQLEYVDIVFANRP--------DPNTP--MEETVRAMTYVINQ--GMAMYWGTSRWSSMEIMEAYSVARQF 167 (317)
T ss_pred HHHHHHHHHhCCCcEeEEEeccC--------CCCCC--HHHHHHHHHHHHHc--CCeeEEEecCCCHHHHHHHHHHHHHc
Confidence 99999999999999999999999 44444 78999999999999 99999999999999888765432
Q ss_pred -CCceeEeccccCCCCCCc--HHHHHHHHhCCceEEEecchhH-------------------------------------
Q psy15666 227 -KVVPAVNQVEFHPHFLQP--QELIDVCNQNKIALQAYASLGS------------------------------------- 266 (339)
Q Consensus 227 -~~~~~~~q~~~~~~~~~~--~~l~~~~~~~gi~v~~~~~l~~------------------------------------- 266 (339)
.++|+++|++||++.++. ..++++|+++||++++|+||++
T Consensus 168 ~~~~~~~~Q~~~~l~~r~~~e~~l~~~~~~~gi~v~a~spl~~G~Ltg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 247 (317)
T TIGR01293 168 NLIPPICEQAEYHMFQREKVEVQLPELYHKIGVGAMTWSPLACGLVSGKYDSGIPPYSRATLKGYQWLKDKILSEEGRRQ 247 (317)
T ss_pred CCCCcceeccccChHhcchhHHHHHHHHHHcCCeEEEeccccccccCCCCCCCCCCcccccccccchhhhhhcchhhHHH
Confidence 257889999999999862 4799999999999999999952
Q ss_pred -----HHHHHHHHcCCCHHHHHHHHHhhCCc--EEecCCCCHHHHHHhhcC-CC--CCCHHHHHHHhcC
Q psy15666 267 -----TSTQIAKVHSVSPAQVLLRWALQENF--LIIPKSVTPERIVQNIAL-DF--ELSPEEVKAIENI 325 (339)
Q Consensus 267 -----~l~~la~~~~~s~~~~al~~~l~~~~--~~i~g~~~~~~l~enl~~-~~--~L~~~~~~~l~~~ 325 (339)
.+.++|+++|+|++|+||+|++++|. ++|||+++++|+++|+++ +. +||++++++|+++
T Consensus 248 ~~~~~~l~~ia~~~g~s~aqlal~w~l~~~~v~~~i~G~~~~~ql~en~~a~~~~~~Ls~e~~~~l~~~ 316 (317)
T TIGR01293 248 QARLKDLQAIAERLGCTLPQLAIAWCLRNEGVSSVLLGASSAEQLMENLGSLQVLPKLSSSIIHEIDSI 316 (317)
T ss_pred HHHHHHHHHHHHHHCcCHHHHHHHHHhcCCCCeEEEeCCCCHHHHHHHHHHhhccCCCCHHHHHHHHhh
Confidence 36678889999999999999999963 589999999999999999 76 9999999999864
No 8
>PRK10625 tas putative aldo-keto reductase; Provisional
Probab=100.00 E-value=2.3e-44 Score=337.14 Aligned_cols=236 Identities=28% Similarity=0.347 Sum_probs=198.9
Q ss_pred CchHHHHHHHHhhhccCccccccccccc----------CHHHHHHHHHhhcccCCCCCCceEEEeccCCC----------
Q psy15666 81 VSPAQVLLRWALQENFCYRAIDTAQEYG----------NEASIGRALKVLLPKFNLKREDIFITSKLSPQ---------- 140 (339)
Q Consensus 81 ~~n~~~~~~~al~~~~g~~~iDta~~y~----------~E~~lG~al~~~~~~~~~~R~~~~i~tK~~~~---------- 140 (339)
.+++..++..+++ .|+++||||+.|| +|..+|++|++. + +|++++|+||++..
T Consensus 29 ~~~a~~~l~~al~--~Gi~~~DTA~~Yg~~~~~~~~g~sE~~iG~aL~~~----~-~R~~v~i~TK~~~~~~~~~~~~~~ 101 (346)
T PRK10625 29 EADAHAQLDYAVA--QGINLIDVAEMYPVPPRPETQGLTETYIGNWLAKR----G-SREKLIIASKVSGPSRNNDKGIRP 101 (346)
T ss_pred HHHHHHHHHHHHH--cCCCEEECccccCCCcCCCCCCchHHHHHHHHhhc----C-CcceEEEEcccccCCcCCCCCcCC
Confidence 4567788999999 9999999999997 799999999853 3 59999999998531
Q ss_pred --CCCCHHHHHHHHHHHHHhcCCCcccEEEeecCCCCCC-------C--CCCCcccccHHHHHHHHHHhhCCCCCCccEE
Q psy15666 141 --YNGNADQVKSLVAQTLKDLGTTYLDLFLIHWPGTFGV-------D--SSSPQQISNRHTLWNALTELYNPNNGPLKSI 209 (339)
Q Consensus 141 --~~~~~~~~~~~~~~sL~~L~~d~iDl~~lH~~~~~~~-------~--~~~~~~~~~~~~~~~~l~~l~~~~~G~ir~i 209 (339)
..++ +.+++++++||+|||+||||||++|||+.... . ...+..+ .+++|++|++|+++ ||||+|
T Consensus 102 ~~~~s~-~~i~~~~e~SL~rL~~d~iDl~~lH~p~~~~~~~~~~~~~~~~~~~~~~--~~e~~~aL~~l~~~--GkIr~i 176 (346)
T PRK10625 102 NQALDR-KNIREALHDSLKRLQTDYLDLYQVHWPQRPTNCFGKLGYSWTDSAPAVS--LLETLDALAEQQRA--GKIRYI 176 (346)
T ss_pred CCCCCH-HHHHHHHHHHHHHhCCCeEeEEEeeccCcccccccccccccccccCCCC--HHHHHHHHHHHHHC--CCeEEE
Confidence 1244 89999999999999999999999999843100 0 0011223 78999999999999 999999
Q ss_pred EecCCCHHHHHHHHHcC----CCceeEeccccCCCCCCc-HHHHHHHHhCCceEEEecchhH------------------
Q psy15666 210 GVSNYTAKHLVNLIQNS----KVVPAVNQVEFHPHFLQP-QELIDVCNQNKIALQAYASLGS------------------ 266 (339)
Q Consensus 210 GvS~~~~~~l~~~~~~~----~~~~~~~q~~~~~~~~~~-~~l~~~~~~~gi~v~~~~~l~~------------------ 266 (339)
|+|||+..++.+++..+ ...+..+|++||+++++. .+++++|+++||++++|+||++
T Consensus 177 GvSn~~~~~l~~~~~~~~~~~~~~~~~~q~~y~l~~r~~~~~ll~~~~~~gi~via~spL~~G~Ltg~~~~~~~~~~~~~ 256 (346)
T PRK10625 177 GVSNETAFGVMRYLHLAEKHDLPRIVTIQNPYSLLNRSFEVGLAEVSQYEGVELLAYSCLAFGTLTGKYLNGAKPAGARN 256 (346)
T ss_pred EecCCCHHHHHHHHHHHHHcCCCCcEEecCCCCcccccchhHHHHHHHHcCCeEEEeccccCeeccCCCCCCCCCCCccc
Confidence 99999999887765422 235688999999998764 5799999999999999999863
Q ss_pred -------------------HHHHHHHHcCCCHHHHHHHHHhhCCc--EEecCCCCHHHHHHhhcC-CCCCCHHHHHHHhc
Q psy15666 267 -------------------TSTQIAKVHSVSPAQVLLRWALQENF--LIIPKSVTPERIVQNIAL-DFELSPEEVKAIEN 324 (339)
Q Consensus 267 -------------------~l~~la~~~~~s~~~~al~~~l~~~~--~~i~g~~~~~~l~enl~~-~~~L~~~~~~~l~~ 324 (339)
.+.++|+++|+|++|+||+|++++|. ++|||+++++||++|+++ +++|+++++++|++
T Consensus 257 ~~~~~~~~~~~~~~~~~~~~l~~la~~~g~t~aqval~w~l~~~~v~~~I~G~~~~~~l~en~~a~~~~L~~~~~~~l~~ 336 (346)
T PRK10625 257 TLFSRFTRYSGEQTQKAVAAYVDIAKRHGLDPAQMALAFVRRQPFVASTLLGATTMEQLKTNIESLHLTLSEEVLAEIEA 336 (346)
T ss_pred ccccccccccchhHHHHHHHHHHHHHHhCCCHHHHHHHHHHhCCCCeeEEeCCCCHHHHHHHHhhccCCCCHHHHHHHHH
Confidence 35578999999999999999999985 389999999999999999 99999999999999
Q ss_pred CCCC
Q psy15666 325 IPNK 328 (339)
Q Consensus 325 ~~~~ 328 (339)
+.+.
T Consensus 337 ~~~~ 340 (346)
T PRK10625 337 VHQV 340 (346)
T ss_pred HHhh
Confidence 8753
No 9
>cd06660 Aldo_ket_red Aldo-keto reductases (AKRs) are a superfamily of soluble NAD(P)(H) oxidoreductases whose chief purpose is to reduce aldehydes and ketones to primary and secondary alcohols. AKRs are present in all phyla and are of importance to both health and industrial applications. Members have very distinct functions and include the prokaryotic 2,5-diketo-D-gluconic acid reductases and beta-keto ester reductases, the eukaryotic aldose reductases, aldehyde reductases, hydroxysteroid dehydrogenases, steroid 5beta-reductases, potassium channel beta-subunits and aflatoxin aldehyde reductases, among others.
Probab=100.00 E-value=1.3e-43 Score=323.95 Aligned_cols=227 Identities=39% Similarity=0.644 Sum_probs=204.6
Q ss_pred CCchHHHHHHHHhhhccCccccccccccc---CHHHHHHHHHhhcccCCCCCCceEEEeccCCCC-----CCCHHHHHHH
Q psy15666 80 SVSPAQVLLRWALQENFCYRAIDTAQEYG---NEASIGRALKVLLPKFNLKREDIFITSKLSPQY-----NGNADQVKSL 151 (339)
Q Consensus 80 ~~~n~~~~~~~al~~~~g~~~iDta~~y~---~E~~lG~al~~~~~~~~~~R~~~~i~tK~~~~~-----~~~~~~~~~~ 151 (339)
..+++..++..+++ .|+|+||||+.|| +|+.+|++|+.. + .|++++|+||+++.. .++ +.++++
T Consensus 27 ~~~~~~~~l~~A~~--~Gi~~iDTA~~Yg~g~sE~~lG~al~~~----~-~R~~~~i~tK~~~~~~~~~~~~~-~~~~~~ 98 (285)
T cd06660 27 DEEEAAAAVRAALD--AGINFIDTADVYGDGESEELLGEALKER----G-PREEVFIATKVGPRPGDGRDLSP-EHIRRA 98 (285)
T ss_pred CHHHHHHHHHHHHH--cCCCeEECccccCCCCCHHHHHHHHhcc----C-CcCcEEEEeeecCCCCCCCCCCH-HHHHHH
Confidence 44677789999999 9999999999999 899999999964 3 499999999998764 244 999999
Q ss_pred HHHHHHhcCCCcccEEEeecCCCCCCCCCCCcccccHHHHHHHHHHhhCCCCCCccEEEecCCCHHHHHHHHHcCCCcee
Q psy15666 152 VAQTLKDLGTTYLDLFLIHWPGTFGVDSSSPQQISNRHTLWNALTELYNPNNGPLKSIGVSNYTAKHLVNLIQNSKVVPA 231 (339)
Q Consensus 152 ~~~sL~~L~~d~iDl~~lH~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~G~ir~iGvS~~~~~~l~~~~~~~~~~~~ 231 (339)
+++||++||+||||+|+||+|+.. .. ...++|++|++++++ |+||+||||||+.+.+.+++..+..+|+
T Consensus 99 l~~sL~~L~~~~iDl~~lh~~~~~--------~~-~~~~~~~~l~~l~~~--G~ir~iGvS~~~~~~l~~~~~~~~~~~~ 167 (285)
T cd06660 99 VEESLKRLGTDYIDLYLLHWPDPD--------TP-DIEETLRALEELVKE--GKIRAIGVSNFSAEQLEEALAAAGVPPA 167 (285)
T ss_pred HHHHHHHhCCCceeEEEecCCCCC--------CC-CHHHHHHHHHHHHHc--CCccEEEeeCCCHHHHHHHHHhhCCCce
Confidence 999999999999999999999332 11 378999999999999 9999999999999999999998777899
Q ss_pred EeccccCCCCCCcH-HHHHHHHhCCceEEEecchhH--------------------HHHHHHHHcCCCHHHHHHHHHhhC
Q psy15666 232 VNQVEFHPHFLQPQ-ELIDVCNQNKIALQAYASLGS--------------------TSTQIAKVHSVSPAQVLLRWALQE 290 (339)
Q Consensus 232 ~~q~~~~~~~~~~~-~l~~~~~~~gi~v~~~~~l~~--------------------~l~~la~~~~~s~~~~al~~~l~~ 290 (339)
++|++||++++... +++++|+++||++++|+||++ .+..++.+++.+++|+|++|++++
T Consensus 168 ~~q~~~n~~~~~~~~~~~~~~~~~gi~v~~~~~l~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~q~al~~~l~~ 247 (285)
T cd06660 168 VNQVEYNLLDRQAEEELLPYCREHGIGVIAYSPLAGGLLTGKYLPGAPPPEGDLLEALKEIAEKHGVTPAQVALRWLLQQ 247 (285)
T ss_pred EEecccCcccCchHHHHHHHHHHcCcEEEEeccccCceecCCCCCCCCCChhhHHHHHHHHHHHhCCCHHHHHHHHHhcC
Confidence 99999999999953 699999999999999999986 256899999999999999999999
Q ss_pred C--cEEecCCCCHHHHHHhhcC-CCCCCHHHHHHHhcC
Q psy15666 291 N--FLIIPKSVTPERIVQNIAL-DFELSPEEVKAIENI 325 (339)
Q Consensus 291 ~--~~~i~g~~~~~~l~enl~~-~~~L~~~~~~~l~~~ 325 (339)
| .++|+|+++++|+++|+++ .++|++++++.|++.
T Consensus 248 p~~~~~i~g~~~~~~l~~n~~~~~~~L~~~~~~~l~~~ 285 (285)
T cd06660 248 PGVTSVIPGASSPERLEENLAALDFELSDEDLAALDAL 285 (285)
T ss_pred CCCeEEEeCCCCHHHHHHHHhhccCCCCHHHHHHHhhC
Confidence 5 5699999999999999999 999999999999863
No 10
>PRK10376 putative oxidoreductase; Provisional
Probab=100.00 E-value=1.1e-43 Score=324.73 Aligned_cols=229 Identities=25% Similarity=0.373 Sum_probs=198.7
Q ss_pred CCchHHHHHHHHhhhccCcccccccccccC---HHHHHHHHHhhcccCCCCCCceEEEeccCCC---------CCCCHHH
Q psy15666 80 SVSPAQVLLRWALQENFCYRAIDTAQEYGN---EASIGRALKVLLPKFNLKREDIFITSKLSPQ---------YNGNADQ 147 (339)
Q Consensus 80 ~~~n~~~~~~~al~~~~g~~~iDta~~y~~---E~~lG~al~~~~~~~~~~R~~~~i~tK~~~~---------~~~~~~~ 147 (339)
.++++..++..+++ .|+|+||||+.||+ |+.+|++++. .|+++||+||++.. ..+ ++.
T Consensus 38 ~~~~~~~~l~~A~~--~Gin~~DTA~~Yg~~~sE~~lg~~l~~-------~R~~~~i~TK~g~~~~~~~~~~~~~~-~~~ 107 (290)
T PRK10376 38 DRDAAIAVLREAVA--LGVNHIDTSDFYGPHVTNQLIREALHP-------YPDDLTIVTKVGARRGEDGSWLPAFS-PAE 107 (290)
T ss_pred CHHHHHHHHHHHHH--cCCCeEEChhhcCCCcHHHHHHHHHhc-------CCCeEEEEeeecccCCCCCccCCCCC-HHH
Confidence 45667889999999 99999999999984 8999999972 39999999998531 223 489
Q ss_pred HHHHHHHHHHhcCCCcccEEEeecCCCCCCCCCCCcccccHHHHHHHHHHhhCCCCCCccEEEecCCCHHHHHHHHHcCC
Q psy15666 148 VKSLVAQTLKDLGTTYLDLFLIHWPGTFGVDSSSPQQISNRHTLWNALTELYNPNNGPLKSIGVSNYTAKHLVNLIQNSK 227 (339)
Q Consensus 148 ~~~~~~~sL~~L~~d~iDl~~lH~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~G~ir~iGvS~~~~~~l~~~~~~~~ 227 (339)
+++++++||+|||+||||+|++|+++.- +++.. ....++|++|++|+++ ||||+||||||+.++++++.+.+
T Consensus 108 i~~~~e~SL~rL~td~iDl~~~H~~~~~----h~p~~-~~~~~~~~~l~~l~~~--Gkir~iGvSn~~~~~l~~~~~~~- 179 (290)
T PRK10376 108 LRRAVHDNLRNLGLDVLDVVNLRLMGDG----HGPAE-GSIEEPLTVLAELQRQ--GLVRHIGLSNVTPTQVAEARKIA- 179 (290)
T ss_pred HHHHHHHHHHHhCCCeEEEEEEeccCCC----CCCCC-CCHHHHHHHHHHHHHC--CceeEEEecCCCHHHHHHHHhhC-
Confidence 9999999999999999999999986210 01111 1377899999999999 99999999999999999998876
Q ss_pred CceeEeccccCCCCCCcHHHHHHHHhCCceEEEecchhH-------HHHHHHHHcCCCHHHHHHHHHhhCC--cEEecCC
Q psy15666 228 VVPAVNQVEFHPHFLQPQELIDVCNQNKIALQAYASLGS-------TSTQIAKVHSVSPAQVLLRWALQEN--FLIIPKS 298 (339)
Q Consensus 228 ~~~~~~q~~~~~~~~~~~~l~~~~~~~gi~v~~~~~l~~-------~l~~la~~~~~s~~~~al~~~l~~~--~~~i~g~ 298 (339)
++.++|++||++.+...+++++|+++||++++|+||++ .+.++|+++|+|++|+||+|+++++ +++|+|+
T Consensus 180 -~~~~~q~~~~~~~~~~~~~~~~~~~~gi~v~a~~pL~g~~~~~~~~l~~ia~~~~~t~aq~al~w~l~~~~~~~~i~G~ 258 (290)
T PRK10376 180 -EIVCVQNHYNLAHRADDALIDALARDGIAYVPFFPLGGFTPLQSSTLSDVAASLGATPMQVALAWLLQRSPNILLIPGT 258 (290)
T ss_pred -CeEEEecccCCCcCChHHHHHHHHHcCCEEEEeecCCCCChhhhHHHHHHHHHhCCCHHHHHHHHHHhCCCCeeEeeCC
Confidence 45889999999987657799999999999999999974 6889999999999999999999873 5689999
Q ss_pred CCHHHHHHhhcC-CCCCCHHHHHHHhcCCC
Q psy15666 299 VTPERIVQNIAL-DFELSPEEVKAIENIPN 327 (339)
Q Consensus 299 ~~~~~l~enl~~-~~~L~~~~~~~l~~~~~ 327 (339)
++++|+++|+++ +++|+++++++|+++.+
T Consensus 259 ~~~~~l~en~~a~~~~L~~e~~~~l~~~~~ 288 (290)
T PRK10376 259 SSVAHLRENLAAAELVLSEEVLAELDGIAR 288 (290)
T ss_pred CCHHHHHHHHhhccCCCCHHHHHHHHHHHh
Confidence 999999999999 99999999999998755
No 11
>PF00248 Aldo_ket_red: Aldo/keto reductase family; InterPro: IPR023210 The aldo-keto reductase family includes a number of related monomeric NADPH-dependent oxidoreductases, such as aldehyde reductase, aldose reductase, prostaglandin F synthase, xylose reductase, rho crystallin, and many others []. All possess a similar structure, with a beta-alpha-beta fold characteristic of nucleotide binding proteins []. The fold comprises a parallel beta-8/alpha-8-barrel, which contains a novel NADP-binding motif. The binding site is located in a large, deep, elliptical pocket in the C-terminal end of the beta sheet, the substrate being bound in an extended conformation. The hydrophobic nature of the pocket favours aromatic and apolar substrates over highly polar ones []. Binding of the NADPH coenzyme causes a massive conformational change, reorienting a loop, effectively locking the coenzyme in place. This binding is more similar to FAD- than to NAD(P)-binding oxidoreductases []. Some proteins of this entry contain a K+ ion channel beta chain regulatory domain; these are reported to have oxidoreductase activity []. This entry represents the NADP-dependent oxidoreductase domain found in these proteins.; PDB: 1C9W_A 4F40_B 1VBJ_A 1XGD_A 1X97_A 2ACS_A 1EF3_A 2ACU_A 1PWM_A 2NVD_A ....
Probab=100.00 E-value=4.5e-44 Score=326.68 Aligned_cols=231 Identities=34% Similarity=0.600 Sum_probs=196.9
Q ss_pred ccCCchHHHHHHHHhhhccCccccccccccc---CHHHHHHHHHhhcccCCCCCCceEEEecc-----CCCCCCCHHHHH
Q psy15666 78 VHSVSPAQVLLRWALQENFCYRAIDTAQEYG---NEASIGRALKVLLPKFNLKREDIFITSKL-----SPQYNGNADQVK 149 (339)
Q Consensus 78 ~~~~~n~~~~~~~al~~~~g~~~iDta~~y~---~E~~lG~al~~~~~~~~~~R~~~~i~tK~-----~~~~~~~~~~~~ 149 (339)
..+.+++..++..+++ .|+|+||||+.|| +|+.+|++|++. ..+|++++|+||+ +....++ +.++
T Consensus 13 ~~~~~~~~~~l~~a~~--~Gin~~DtA~~Y~~g~sE~~lg~~l~~~----~~~r~~~~i~tK~~~~~~~~~~~~~-~~i~ 85 (283)
T PF00248_consen 13 RVSEEEAEAILRRALE--AGINFFDTADSYGNGRSERILGRALRKS----RVPRDDIFISTKVYGDGKPEPDYSP-DSIR 85 (283)
T ss_dssp TSTHHHHHHHHHHHHH--TT--EEEECGGGGGGTHHHHHHHHHHHT----SSTGGGSEEEEEEESSSSTGGGSSH-HHHH
T ss_pred CCCHHHHHHHHHHHHH--cCCCeecccccccccccccccccccccc----ccccccccccccccccccccccccc-cccc
Confidence 5567778889999999 9999999999993 699999999974 5689999999999 3333444 9999
Q ss_pred HHHHHHHHhcCCCcccEEEeecCCCCCCCCCCCcccccHHHHHHHHHHhhCCCCCCccEEEecCCCHHHHHHHHHcCCCc
Q psy15666 150 SLVAQTLKDLGTTYLDLFLIHWPGTFGVDSSSPQQISNRHTLWNALTELYNPNNGPLKSIGVSNYTAKHLVNLIQNSKVV 229 (339)
Q Consensus 150 ~~~~~sL~~L~~d~iDl~~lH~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~G~ir~iGvS~~~~~~l~~~~~~~~~~ 229 (339)
+++++||++||+||||+|++|+|+.. .. ...++|++|++|+++ |+||+||||||+++.++.+.....++
T Consensus 86 ~~~~~sL~~L~~d~iDl~~lH~~~~~--------~~-~~~~~~~~l~~l~~~--G~ir~iGvs~~~~~~l~~~~~~~~~~ 154 (283)
T PF00248_consen 86 ESLERSLERLGTDYIDLLLLHWPDPS--------ED-ALEEVWEALEELKKE--GKIRHIGVSNFSPEQLEAALKIGSIP 154 (283)
T ss_dssp HHHHHHHHHHTSSSEEEEEESSSSTT--------SS-HHHHHHHHHHHHHHT--TSEEEEEEES--HHHHHHHHTCTSS-
T ss_pred cccccccccccccchhcccccccccc--------cc-ccchhhhhhhhcccc--cccccccccccccccccccccccccc
Confidence 99999999999999999999999321 11 388999999999999 99999999999999999998888899
Q ss_pred eeEeccccCCCCCC-cHHHHHHHHhCCceEEEecchhH---------------------------HHHHHHHHcCCCHHH
Q psy15666 230 PAVNQVEFHPHFLQ-PQELIDVCNQNKIALQAYASLGS---------------------------TSTQIAKVHSVSPAQ 281 (339)
Q Consensus 230 ~~~~q~~~~~~~~~-~~~l~~~~~~~gi~v~~~~~l~~---------------------------~l~~la~~~~~s~~~ 281 (339)
|+++|++||++.+. ..+++++|+++||++++|+||++ .+.++++++|.|++|
T Consensus 155 ~~~~q~~~n~~~~~~~~~l~~~~~~~gi~v~a~~~l~~G~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~g~s~~q 234 (283)
T PF00248_consen 155 PDVVQINYNLLNRREEEGLLEFCREHGIGVIAYSPLAGGLLTGKYKSPPPPPSRASLRDAQELADALRELAEEHGVSPAQ 234 (283)
T ss_dssp ESEEEEE-BTTBHBGGHHHHHHHHHTT-EEEEESTTGGGCGGTTTTTTTTSTTTSGSSTHGGGHHHHHHHHHHHTSSHHH
T ss_pred ccccccccccccccccccccccccccccccccccccccCccccccccCCCcccccccchhhhhhhhhhhhhhhcccccch
Confidence 99999999999443 38999999999999999999996 488999999999999
Q ss_pred HHHHHHhhC--CcEEecCCCCHHHHHHhhcC-CCCCCHHHHHHHhcCC
Q psy15666 282 VLLRWALQE--NFLIIPKSVTPERIVQNIAL-DFELSPEEVKAIENIP 326 (339)
Q Consensus 282 ~al~~~l~~--~~~~i~g~~~~~~l~enl~~-~~~L~~~~~~~l~~~~ 326 (339)
+||+|++++ ..++|+|+++++|+++|+++ +++||+++++.|+++.
T Consensus 235 ~al~~~l~~~~~~~~i~g~~~~~~l~en~~a~~~~L~~~~~~~i~~~~ 282 (283)
T PF00248_consen 235 LALRWVLSHPGVASVIVGASSPEHLEENLAALDFPLTEEELAEIDQIL 282 (283)
T ss_dssp HHHHHHHTSHTTEEEEEB-SSHHHHHHHHGGSSSG--HHHHHHHHTTH
T ss_pred hhhhhhhhccccccccCCCCCHHHHHHHHHHhCCCCCHHHHHHHHhhh
Confidence 999999976 46799999999999999999 8899999999999874
No 12
>PRK09912 L-glyceraldehyde 3-phosphate reductase; Provisional
Probab=100.00 E-value=1.6e-43 Score=330.96 Aligned_cols=232 Identities=21% Similarity=0.348 Sum_probs=198.7
Q ss_pred CchHHHHHHHHhhhccCccccccccccc-----CHHHHHHHHHhhcccCCCCCCceEEEeccCCC----C---CCCHHHH
Q psy15666 81 VSPAQVLLRWALQENFCYRAIDTAQEYG-----NEASIGRALKVLLPKFNLKREDIFITSKLSPQ----Y---NGNADQV 148 (339)
Q Consensus 81 ~~n~~~~~~~al~~~~g~~~iDta~~y~-----~E~~lG~al~~~~~~~~~~R~~~~i~tK~~~~----~---~~~~~~~ 148 (339)
.+.+..++..+++ .|+++||||+.|| +|+.+|++|++.. +.+|++++|+||++.. . ...++.+
T Consensus 42 ~~~~~~~l~~A~~--~Gin~~DTA~~YG~~~g~sE~~lG~~l~~~~---~~~Rd~~~I~TK~g~~~~~~~~~~~~s~~~i 116 (346)
T PRK09912 42 LESQRAILRKAFD--LGITHFDLANNYGPPPGSAEENFGRLLREDF---AAYRDELIISTKAGYDMWPGPYGSGGSRKYL 116 (346)
T ss_pred HHHHHHHHHHHHH--CCCCEEEChhhhCCCCCCcHHHHHHHHHhcc---cCCCCeEEEEEEecccCCCCcCCCCCCHHHH
Confidence 3456788999999 9999999999998 5999999998531 1259999999998631 1 1224889
Q ss_pred HHHHHHHHHhcCCCcccEEEeecCCCCCCCCCCCcccccHHHHHHHHHHhhCCCCCCccEEEecCCCHHHHHHHHH---c
Q psy15666 149 KSLVAQTLKDLGTTYLDLFLIHWPGTFGVDSSSPQQISNRHTLWNALTELYNPNNGPLKSIGVSNYTAKHLVNLIQ---N 225 (339)
Q Consensus 149 ~~~~~~sL~~L~~d~iDl~~lH~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~G~ir~iGvS~~~~~~l~~~~~---~ 225 (339)
++++++||+|||+||||+|++|+| ++..+ .+++|++|++|+++ ||||+||||||++++++++.+ .
T Consensus 117 ~~~~e~SL~rLg~d~iDl~~lH~~--------~~~~~--~~e~~~al~~l~~~--GkIr~iGvSn~~~~~~~~~~~~~~~ 184 (346)
T PRK09912 117 LASLDQSLKRMGLEYVDIFYSHRV--------DENTP--MEETASALAHAVQS--GKALYVGISSYSPERTQKMVELLRE 184 (346)
T ss_pred HHHHHHHHHHHCCCcEEEEEeCCC--------CCCCC--HHHHHHHHHHHHHc--CCeeEEEecCCCHHHHHHHHHHHHh
Confidence 999999999999999999999998 34444 78999999999999 999999999999998876554 3
Q ss_pred CCCceeEeccccCCCCCCc--HHHHHHHHhCCceEEEecchhH-------------------------------------
Q psy15666 226 SKVVPAVNQVEFHPHFLQP--QELIDVCNQNKIALQAYASLGS------------------------------------- 266 (339)
Q Consensus 226 ~~~~~~~~q~~~~~~~~~~--~~l~~~~~~~gi~v~~~~~l~~------------------------------------- 266 (339)
..+++.++|++||++++.. .+++++|+++||++++|+||++
T Consensus 185 ~~~~~~~~Q~~ynll~~~~~~~~ll~~~~~~gI~via~spl~~G~Lt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 264 (346)
T PRK09912 185 WKIPLLIHQPSYNLLNRWVDKSGLLDTLQNNGVGCIAFTPLAQGLLTGKYLNGIPQDSRMHREGNKVRGLTPKMLTEANL 264 (346)
T ss_pred cCCCcEEeeccCCceecccchhhHHHHHHHcCceEEEehhhcCccccCCCCCCCCCCccccccccchhhhchhhccHHHH
Confidence 4567889999999999763 4699999999999999999963
Q ss_pred ----HHHHHHHHcCCCHHHHHHHHHhhCC--cEEecCCCCHHHHHHhhcC-C-CCCCHHHHHHHhcCCCCC
Q psy15666 267 ----TSTQIAKVHSVSPAQVLLRWALQEN--FLIIPKSVTPERIVQNIAL-D-FELSPEEVKAIENIPNKQ 329 (339)
Q Consensus 267 ----~l~~la~~~~~s~~~~al~~~l~~~--~~~i~g~~~~~~l~enl~~-~-~~L~~~~~~~l~~~~~~~ 329 (339)
.+.++|+++|+|++|+||+|++++| .++|||+++++||++|+++ . ++|++++++.|+++.++.
T Consensus 265 ~~~~~l~~~a~~~g~t~aq~AL~w~l~~~~v~~~i~G~~~~~ql~en~~a~~~~~L~~e~~~~l~~~~~~~ 335 (346)
T PRK09912 265 NSLRLLNEMAQQRGQSMAQMALSWLLKDERVTSVLIGASRAEQLEENVQALNNLTFSTEELAQIDQHIADG 335 (346)
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHhCCCCeEEEeCCCCHHHHHHHHhhhcCCCCCHHHHHHHHHhhCcc
Confidence 2446788999999999999999998 4589999999999999998 4 899999999999987654
No 13
>PLN02587 L-galactose dehydrogenase
Probab=100.00 E-value=3e-43 Score=325.55 Aligned_cols=233 Identities=19% Similarity=0.242 Sum_probs=197.5
Q ss_pred CCchHHHHHHHHhhhccCccccccccccc---CHHHHHHHHHhhcccCCCCCCceEEEeccCCC----CCCCHHHHHHHH
Q psy15666 80 SVSPAQVLLRWALQENFCYRAIDTAQEYG---NEASIGRALKVLLPKFNLKREDIFITSKLSPQ----YNGNADQVKSLV 152 (339)
Q Consensus 80 ~~~n~~~~~~~al~~~~g~~~iDta~~y~---~E~~lG~al~~~~~~~~~~R~~~~i~tK~~~~----~~~~~~~~~~~~ 152 (339)
..+++..++..+++ .|+++||||+.|| +|+.+|++|++. +++|+++||+||+++. ..++ +.+++++
T Consensus 29 ~~~~~~~~l~~A~~--~Gin~~DTA~~Yg~g~sE~~lG~al~~~----~~~R~~v~I~TK~~~~~~~~~~~~-~~i~~~~ 101 (314)
T PLN02587 29 SEEDAIASVREAFR--LGINFFDTSPYYGGTLSEKVLGKALKAL----GIPREKYVVSTKCGRYGEGFDFSA-ERVTKSV 101 (314)
T ss_pred CHHHHHHHHHHHHH--cCCCEEECcCccCCCchHHHHHHHHHhC----CCCcceEEEEeccccCCCCCCCCH-HHHHHHH
Confidence 34567789999999 9999999999997 499999999965 5679999999999743 2344 8999999
Q ss_pred HHHHHhcCCCcccEEEeecCCCCCCCCCCCcccccHHHHHHHHHHhhCCCCCCccEEEecCCCHHHHHHHHHcC---CCc
Q psy15666 153 AQTLKDLGTTYLDLFLIHWPGTFGVDSSSPQQISNRHTLWNALTELYNPNNGPLKSIGVSNYTAKHLVNLIQNS---KVV 229 (339)
Q Consensus 153 ~~sL~~L~~d~iDl~~lH~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~G~ir~iGvS~~~~~~l~~~~~~~---~~~ 229 (339)
++||++||+||||+|+||+|+.. ++... .+++|++|++|+++ ||||+||+|||+++++..+.... .+.
T Consensus 102 e~SL~rL~~d~iDl~~lH~~~~~-----~~~~~--~~~~~~~l~~l~~~--Gkir~iGvSn~~~~~~~~~~~~~~~~~~~ 172 (314)
T PLN02587 102 DESLARLQLDYVDILHCHDIEFG-----SLDQI--VNETIPALQKLKES--GKVRFIGITGLPLAIFTYVLDRVPPGTVD 172 (314)
T ss_pred HHHHHHhCCCCeeEEEecCCCCc-----chhhh--HHHHHHHHHHHHHC--CCeEEEEecCCCHHHHHHHHHhhhcCCCC
Confidence 99999999999999999998321 11222 67899999999999 99999999999998887776532 234
Q ss_pred eeEeccccCCCCCCcHHHHHHHHhCCceEEEecchhH-----------------------HHHHHHHHcCCCHHHHHHHH
Q psy15666 230 PAVNQVEFHPHFLQPQELIDVCNQNKIALQAYASLGS-----------------------TSTQIAKVHSVSPAQVLLRW 286 (339)
Q Consensus 230 ~~~~q~~~~~~~~~~~~l~~~~~~~gi~v~~~~~l~~-----------------------~l~~la~~~~~s~~~~al~~ 286 (339)
+..+|+.|++.++...+++++|+++||++++|+||++ .+..+|+++|.|++|+||+|
T Consensus 173 ~~~~~~~~~l~~~~~~~ll~~~~~~gi~v~a~spl~~G~L~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~~s~aq~al~~ 252 (314)
T PLN02587 173 VILSYCHYSLNDSSLEDLLPYLKSKGVGVISASPLAMGLLTENGPPEWHPAPPELKSACAAAATHCKEKGKNISKLALQY 252 (314)
T ss_pred eEEeccccCcchhhHHHHHHHHHHcCceEEEechhhccccCCCCCCCCCCCCHHHHHHHHHHHHHHHHhCCCHHHHHHHH
Confidence 5557888888776546899999999999999999964 25679999999999999999
Q ss_pred HhhCCc--EEecCCCCHHHHHHhhcC-C----CCCCHHHHHHHhcCCCC
Q psy15666 287 ALQENF--LIIPKSVTPERIVQNIAL-D----FELSPEEVKAIENIPNK 328 (339)
Q Consensus 287 ~l~~~~--~~i~g~~~~~~l~enl~~-~----~~L~~~~~~~l~~~~~~ 328 (339)
++++|. ++|+|+++++|+++|+++ . ++|+++++++|+++...
T Consensus 253 ~l~~~~v~~~i~G~~~~~~l~~nl~a~~~~~~~~l~~~~~~~l~~~~~~ 301 (314)
T PLN02587 253 SLSNKDISTTLVGMNSVQQVEENVAAATELETSGIDEELLSEVEAILAP 301 (314)
T ss_pred HHhCCCCeeEEecCCCHHHHHHHHHHHhhcccCCCCHHHHHHHHHhhcc
Confidence 999984 489999999999999998 4 37999999999987763
No 14
>PRK14863 bifunctional regulator KidO; Provisional
Probab=100.00 E-value=3.5e-41 Score=307.63 Aligned_cols=223 Identities=15% Similarity=0.173 Sum_probs=188.7
Q ss_pred cCCchHHHHHHHHhhhccCccccccccccc-CHHHHHHHHHhhcccCCCCCCceEEEeccCCCCCCCHHHHHHHHHHHHH
Q psy15666 79 HSVSPAQVLLRWALQENFCYRAIDTAQEYG-NEASIGRALKVLLPKFNLKREDIFITSKLSPQYNGNADQVKSLVAQTLK 157 (339)
Q Consensus 79 ~~~~n~~~~~~~al~~~~g~~~iDta~~y~-~E~~lG~al~~~~~~~~~~R~~~~i~tK~~~~~~~~~~~~~~~~~~sL~ 157 (339)
...+++...+..+++ .|+++||||+.|| +|+.+|++|+. ..|++++++||.. ..++ +.+++++++||+
T Consensus 29 ~~~~ea~~~l~~A~~--~Gin~~DTA~~YG~SE~~lG~al~~------~~~~~~~i~tk~~--~~~~-~~i~~~~e~SL~ 97 (292)
T PRK14863 29 TPEAEARDILNIAAR--AGLSVLDASGLFGRAETVLGQLIPR------PVPFRVTLSTVRA--DRGP-DFVEAEARASLR 97 (292)
T ss_pred CCHHHHHHHHHHHHH--cCCCEEecchhhhhHHHHHhhhhcc------CCceEeecccccc--cccH-HHHHHHHHHHHH
Confidence 456777889999999 9999999999999 59999999973 1346789999853 2345 899999999999
Q ss_pred hcCCCcccEEEeecCCCCCCCCCCCcccccHHHHHHHHHHhhCCCCCCccEEEecCCCHHHHHHHHHcCCCceeEecccc
Q psy15666 158 DLGTTYLDLFLIHWPGTFGVDSSSPQQISNRHTLWNALTELYNPNNGPLKSIGVSNYTAKHLVNLIQNSKVVPAVNQVEF 237 (339)
Q Consensus 158 ~L~~d~iDl~~lH~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~G~ir~iGvS~~~~~~l~~~~~~~~~~~~~~q~~~ 237 (339)
|||+||||+|++|+|+ +.......++|++|++|+++ ||||+||||||+++++..+... .+|+++|++|
T Consensus 98 rLg~d~iDl~~lH~~~--------~~~~~~~~~~~~~l~~l~~~--Gkir~iGvSn~~~~~~~~~~~~--~~~~~~Q~~~ 165 (292)
T PRK14863 98 RMGVERADAILVHSPT--------ELFGPHGAALWERLQALKDQ--GLFAKIGVSAHASDDPVGVARR--FKPDILQAPA 165 (292)
T ss_pred HhCCCccCeEEEeCch--------hhcCcchHHHHHHHHHHHHc--CCcceEeeeccCHHHHHHHHhc--CCCCEEEecC
Confidence 9999999999999982 21111135789999999999 9999999999999998887654 4779999999
Q ss_pred CCCCCCc--HHHHHHHHhCCceEEEecchhH----------------------HHHHHHHHcCCCHHHHHHHHHhhCCc-
Q psy15666 238 HPHFLQP--QELIDVCNQNKIALQAYASLGS----------------------TSTQIAKVHSVSPAQVLLRWALQENF- 292 (339)
Q Consensus 238 ~~~~~~~--~~l~~~~~~~gi~v~~~~~l~~----------------------~l~~la~~~~~s~~~~al~~~l~~~~- 292 (339)
|+++++. .+++++|+++||++++|+||++ .+.+++.+.+.|++|+||+|+++++.
T Consensus 166 n~l~~~~~~~~~l~~~~~~gi~v~a~spl~~G~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~aqlalaw~l~~p~v 245 (292)
T PRK14863 166 SLLDQRLLADGSLQRIAGMGVEVHLRSIFLNGLLFLPPDRVPAQLKGASGRLSRVRRMIAEGRSDPLQAALGFALSRPEG 245 (292)
T ss_pred CcccccccccchHHHHHhCCCEEEEechhhCccccCCcccCccchhhhhHHHHHHHHHHHHcCCCHHHHHHHHHHhCCCC
Confidence 9999873 3699999999999999999975 24456777899999999999999973
Q ss_pred -EEecCCCCHHHHHHhhcC-CCCCCHHHHHHHhc
Q psy15666 293 -LIIPKSVTPERIVQNIAL-DFELSPEEVKAIEN 324 (339)
Q Consensus 293 -~~i~g~~~~~~l~enl~~-~~~L~~~~~~~l~~ 324 (339)
++|+|+++++|+++|+++ +.+++++.+++|..
T Consensus 246 ~~~I~G~~~~~ql~~n~~a~~~~~~~~~~~~l~~ 279 (292)
T PRK14863 246 SAVLVGVNSAAELSAVVAAASSPPPDLDWDDMAI 279 (292)
T ss_pred CeEEEecCCHHHHHHHHHHHhcCCCccchhhccC
Confidence 489999999999999999 77899888777654
No 15
>COG4989 Predicted oxidoreductase [General function prediction only]
Probab=100.00 E-value=3.7e-40 Score=280.20 Aligned_cols=227 Identities=29% Similarity=0.360 Sum_probs=205.3
Q ss_pred chHHHHHHHHhhhccCcccccccccccC---HHHHHHHHHhhcccCCCCCCceEEEeccCCC------------CCCCHH
Q psy15666 82 SPAQVLLRWALQENFCYRAIDTAQEYGN---EASIGRALKVLLPKFNLKREDIFITSKLSPQ------------YNGNAD 146 (339)
Q Consensus 82 ~n~~~~~~~al~~~~g~~~iDta~~y~~---E~~lG~al~~~~~~~~~~R~~~~i~tK~~~~------------~~~~~~ 146 (339)
.+....+..+++ .|++.+|-|+.||. |..+|.||+-. .--|+++.|.||++.. +.+ ++
T Consensus 31 ~e~~~~Ie~~le--~Gitt~DhADIYGgy~cE~~fg~aL~l~----p~lRekieivsKCGI~~~s~~~~~~~hydts-~~ 103 (298)
T COG4989 31 RELLSFIETALE--LGITTFDHADIYGGYQCEALFGEALKLA----PGLREKIEIVSKCGIRLPSREEPRIGHYDTS-KE 103 (298)
T ss_pred HHHHHHHHHHHH--cCcccchhhhhcCCccHHHHHHHHHhcC----hhhhhheEeeeccccccccccccccccccCc-HH
Confidence 355567889999 99999999999996 99999999965 4469999999999732 233 49
Q ss_pred HHHHHHHHHHHhcCCCcccEEEeecCCCCCCCCCCCcccccHHHHHHHHHHhhCCCCCCccEEEecCCCHHHHHHHHHcC
Q psy15666 147 QVKSLVAQTLKDLGTTYLDLFLIHWPGTFGVDSSSPQQISNRHTLWNALTELYNPNNGPLKSIGVSNYTAKHLVNLIQNS 226 (339)
Q Consensus 147 ~~~~~~~~sL~~L~~d~iDl~~lH~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~G~ir~iGvS~~~~~~l~~~~~~~ 226 (339)
++..++++||++|+|||+|+++||+| |+... .+++.+++..|++. ||||++|||||++.+++-+-...
T Consensus 104 HI~~SVe~SL~~L~tDylD~LLiHRP--------DpLmd--~eeVAeAf~~L~~s--GKVr~fGVSNf~p~Q~~LL~s~l 171 (298)
T COG4989 104 HIIKSVEQSLINLKTDYLDLLLIHRP--------DPLMD--AEEVAEAFTHLHKS--GKVRHFGVSNFNPAQFELLQSRL 171 (298)
T ss_pred HHHHHHHHHHHHhccchhhhhhccCC--------cccCC--HHHHHHHHHHHHhc--CCeeeeecCCCCHHHHHHHHHhc
Confidence 99999999999999999999999999 77766 89999999999999 99999999999999999888888
Q ss_pred CCceeEeccccCCCCCCc--HHHHHHHHhCCceEEEecchhH---------------HHHHHHHHcC-CCHHHHHHHHHh
Q psy15666 227 KVVPAVNQVEFHPHFLQP--QELIDVCNQNKIALQAYASLGS---------------TSTQIAKVHS-VSPAQVLLRWAL 288 (339)
Q Consensus 227 ~~~~~~~q~~~~~~~~~~--~~l~~~~~~~gi~v~~~~~l~~---------------~l~~la~~~~-~s~~~~al~~~l 288 (339)
..+.+.||+++|+++... ++.+++|+.+.|..++||||++ .+.++|.++| .|.+++|++|++
T Consensus 172 ~~~LvtNQlelS~~~~~~~~DGtLd~~q~~~v~pmaWSpl~gG~~F~g~~~~q~l~~~l~~ia~e~ga~s~~~VaiAWll 251 (298)
T COG4989 172 PFTLVTNQLELSPLHTPMLLDGTLDYCQQLRVRPMAWSPLGGGGLFLGDDKFQRLRKVLDRIAEEYGAVSITAVAIAWLL 251 (298)
T ss_pred cchhhhcceeeccccccccccchHHHHHHcCCCcccccccCCCccccCCcchHHHHHHHHHHHHHhCcccHHHHHHHHHH
Confidence 888899999999999873 6799999999999999999987 7889999999 799999999999
Q ss_pred hCCc--EEecCCCCHHHHHHhhcC-CCCCCHHHHHHHhcCCC
Q psy15666 289 QENF--LIIPKSVTPERIVQNIAL-DFELSPEEVKAIENIPN 327 (339)
Q Consensus 289 ~~~~--~~i~g~~~~~~l~enl~~-~~~L~~~~~~~l~~~~~ 327 (339)
.+|. .+|+|+.+++++++.+++ +..||.++|-+|-....
T Consensus 252 R~Pa~~~PiiGt~~~eRi~~a~~Al~~~LtRqqWf~Iy~Aa~ 293 (298)
T COG4989 252 RHPAKPQPIIGTGNLERIRAAIKALSLTLTRQQWFEIYTAAI 293 (298)
T ss_pred hCcCcccceecCCCHHHHHHHHHHhhccccHHHHHHHHHHhc
Confidence 9995 589999999999999999 99999999998876553
No 16
>COG1453 Predicted oxidoreductases of the aldo/keto reductase family [General function prediction only]
Probab=100.00 E-value=4.7e-36 Score=268.74 Aligned_cols=244 Identities=21% Similarity=0.299 Sum_probs=204.5
Q ss_pred cchhhhhccccccCCchHHHHHHHHhhhccCcccccccccc--c-CHHHHHHHHHhhcccCCCCCCceEEEeccCCCCCC
Q psy15666 67 NFCKFIKLYHKVHSVSPAQVLLRWALQENFCYRAIDTAQEY--G-NEASIGRALKVLLPKFNLKREDIFITSKLSPQYNG 143 (339)
Q Consensus 67 g~~~i~~s~~~~~~~~n~~~~~~~al~~~~g~~~iDta~~y--~-~E~~lG~al~~~~~~~~~~R~~~~i~tK~~~~~~~ 143 (339)
|...+|-...+.-+.+++...+..+++ .|+++||||..| | ||..+|+||++. .|++|.++||+......
T Consensus 19 G~MRlp~~~~~~id~~~~~~~i~~aie--~GiNyidTA~~Yh~g~sE~~lgkaL~~~------~Rekv~LaTKlp~~~~~ 90 (391)
T COG1453 19 GCMRLPLKEQGSIDEENANETIDYAIE--HGINYIDTAWPYHGGESEEFLGKALKDG------YREKVKLATKLPSWPVK 90 (391)
T ss_pred ceeecccccCCCccHHHHHHHHHHHHH--cCCceEeecccccCCCchHHHHHHhhhc------ccceEEEEeecCCcccc
Confidence 444445444456678888999999999 999999999999 6 699999999964 59999999999855444
Q ss_pred CHHHHHHHHHHHHHhcCCCcccEEEeecCCCCCCCCCCCcccccHHHHHHHHHHhhCCCCCCccEEEecCCCH-HHHHHH
Q psy15666 144 NADQVKSLVAQTLKDLGTTYLDLFLIHWPGTFGVDSSSPQQISNRHTLWNALTELYNPNNGPLKSIGVSNYTA-KHLVNL 222 (339)
Q Consensus 144 ~~~~~~~~~~~sL~~L~~d~iDl~~lH~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~G~ir~iGvS~~~~-~~l~~~ 222 (339)
.++.+++-++++|++||+||+|+|+||......+ +..+ ..+.++.+++++++ |+||++|+|.|+. +.+.++
T Consensus 91 ~~edm~r~fneqLekl~~Dy~D~yliH~l~~e~~-----~k~~-~~g~~df~~kak~e--GkIr~~GFSfHgs~e~~~~i 162 (391)
T COG1453 91 DREDMERIFNEQLEKLGTDYIDYYLIHGLNTETW-----EKIE-RLGVFDFLEKAKAE--GKIRNAGFSFHGSTEVFKEI 162 (391)
T ss_pred CHHHHHHHHHHHHHHhCCchhhhhhhccccHHHH-----HHHH-ccChHHHHHHHHhc--CcEEEeeecCCCCHHHHHHH
Confidence 4589999999999999999999999999833211 1111 22378999999999 9999999999987 778888
Q ss_pred HHcCCCceeEeccccCCCCCCcH---HHHHHHHhCCceEEEecchhH---------HHHHHHHHcC--CCHHHHHHHHHh
Q psy15666 223 IQNSKVVPAVNQVEFHPHFLQPQ---ELIDVCNQNKIALQAYASLGS---------TSTQIAKVHS--VSPAQVLLRWAL 288 (339)
Q Consensus 223 ~~~~~~~~~~~q~~~~~~~~~~~---~l~~~~~~~gi~v~~~~~l~~---------~l~~la~~~~--~s~~~~al~~~l 288 (339)
+.... ++++|+.||.++.... +.+.+|.++|++|+.|+|+.+ .+.++.++++ .||+..|+||++
T Consensus 163 v~a~~--~dfvqlq~ny~d~~n~~~~~~l~~A~~~~~gI~IMeP~~gG~l~~~vP~~~~~l~~~~~~~~sP~~wa~R~~~ 240 (391)
T COG1453 163 VDAYP--WDFVQLQYNYIDQKNQAGTEGLKYAASKGLGIFIMEPLDGGGLLYNVPEKLEELCRPASPKRSPAEWALRYLL 240 (391)
T ss_pred HhcCC--cceEEeeeeeeccchhcccHHHHHHHhCCCcEEEEeeCCCCCcccCCCHHHHHHHHhcCCCCCcHHHHHHHHh
Confidence 88775 5888888888887754 899999999999999999987 7888999885 689999999999
Q ss_pred hCCc--EEecCCCCHHHHHHhhcC--C-C-CCCHHHHHHHhcCCCC
Q psy15666 289 QENF--LIIPKSVTPERIVQNIAL--D-F-ELSPEEVKAIENIPNK 328 (339)
Q Consensus 289 ~~~~--~~i~g~~~~~~l~enl~~--~-~-~L~~~~~~~l~~~~~~ 328 (339)
+++. ++++|+++++|++||++. . . +||++|+..|.++.+.
T Consensus 241 shp~V~~vlsGm~~~~~l~enLk~~~~~~p~lte~e~~il~~v~~~ 286 (391)
T COG1453 241 SHPEVTTVLSGMNTPEQLEENLKIASELEPSLTEEELQILEKVEEI 286 (391)
T ss_pred cCCCeEEEecCCCCHHHHHHHHHHHhhcCCccCHHHHHHHHHHHHH
Confidence 9985 488999999999999987 3 3 4999999888877664
No 17
>KOG1576|consensus
Probab=100.00 E-value=8.7e-34 Score=243.08 Aligned_cols=233 Identities=19% Similarity=0.215 Sum_probs=190.4
Q ss_pred cchhhhhccccccCCchHHHHHHHHhhhccCccccccccccc---CHHHHHHHHHhhcccCCCCCCceEEEeccCCCCCC
Q psy15666 67 NFCKFIKLYHKVHSVSPAQVLLRWALQENFCYRAIDTAQEYG---NEASIGRALKVLLPKFNLKREDIFITSKLSPQYNG 143 (339)
Q Consensus 67 g~~~i~~s~~~~~~~~n~~~~~~~al~~~~g~~~iDta~~y~---~E~~lG~al~~~~~~~~~~R~~~~i~tK~~~~~~~ 143 (339)
|..++.+.++. ...++.-..+..|+. .|+|+|||++.|| +|..+|.+++ .+||+.++|+||++....+
T Consensus 40 Gga~L~~~fgd-~~~e~~i~tv~eA~k--~GINyiDTsp~Ygqs~se~~lg~al~------~vPR~aYyIaTKvgRy~ld 110 (342)
T KOG1576|consen 40 GGAALGQLFGD-EDEEEGILTVIEAFK--SGINYIDTSPYYGQSRSEEGLGLALK------DVPREAYYIATKVGRYELD 110 (342)
T ss_pred cchhhhhhcCC-cchhhhHHHHHHHHH--ccccceecCcccCcchhHHHHHHHHh------hCChhheeeeeeeeecccC
Confidence 55566666665 444555566677999 9999999999999 5999999999 6799999999999865322
Q ss_pred -------CHHHHHHHHHHHHHhcCCCcccEEEeecCCCCCCCCCCCcccccHHHHHHHHHHhhCCCCCCccEEEecCCCH
Q psy15666 144 -------NADQVKSLVAQTLKDLGTTYLDLFLIHWPGTFGVDSSSPQQISNRHTLWNALTELYNPNNGPLKSIGVSNYTA 216 (339)
Q Consensus 144 -------~~~~~~~~~~~sL~~L~~d~iDl~~lH~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~G~ir~iGvS~~~~ 216 (339)
+++.+++++++||+||++||+|++++|..++. |+....+.|++.+|++++++ ||||+||||.++.
T Consensus 111 ~~~~FdfsadkvreSv~rSlerLqldyvDilqiHDvefa------p~ld~vl~Etlp~Le~lk~~--Gk~RfiGitgypl 182 (342)
T KOG1576|consen 111 YANMFDFSADKVRESVKRSLERLQLDYVDILQIHDVEFA------PNLDIVLNETLPALEELKQE--GKIRFIGITGYPL 182 (342)
T ss_pred ccccccchHHHHHHHHHHHHHHhCCceeEEEEeeccccc------ccccHHHHHHHHHHHHHHhc--CceeEeeecccch
Confidence 25999999999999999999999999998552 33334588999999999999 9999999999999
Q ss_pred HHHHHHHHcCCCceeEe--ccccCCCCCCcHHHHHHHHhCCceEEEecchhH-----------------------HHHHH
Q psy15666 217 KHLVNLIQNSKVVPAVN--QVEFHPHFLQPQELIDVCNQNKIALQAYASLGS-----------------------TSTQI 271 (339)
Q Consensus 217 ~~l~~~~~~~~~~~~~~--q~~~~~~~~~~~~l~~~~~~~gi~v~~~~~l~~-----------------------~l~~l 271 (339)
+.+.++.+...-..+++ -++|++.+..--..+++.+++|++|+.-++++. +-.+.
T Consensus 183 dvl~~~ae~~~G~~dvvlsY~ry~l~d~tLl~~~~~~~sk~vgVi~AsalsmgLLt~~gp~~wHPaS~Elk~~a~~aa~~ 262 (342)
T KOG1576|consen 183 DVLTECAERGKGRLDVVLSYCRYTLNDNTLLRYLKRLKSKGVGVINASALSMGLLTNQGPPPWHPASDELKEAAKAAAEY 262 (342)
T ss_pred HHHHHHHhcCCCceeeehhhhhhccccHHHHHHHHHHHhcCceEEehhhHHHHHhhcCCCCCCCCCCHHHHHHHHHHHHH
Confidence 99999998764333433 366666554435677888999999999999986 45567
Q ss_pred HHHcCCCHHHHHHHHHhhCCc--EEecCCCCHHHHHHhhcC-CCCCCH
Q psy15666 272 AKVHSVSPAQVLLRWALQENF--LIIPKSVTPERIVQNIAL-DFELSP 316 (339)
Q Consensus 272 a~~~~~s~~~~al~~~l~~~~--~~i~g~~~~~~l~enl~~-~~~L~~ 316 (339)
|++.++..+.+|++|.++.+. ++++|+++.++++.|+++ ...||.
T Consensus 263 Cq~rnv~l~kLA~~Yam~~~~~~~~lvGm~s~~~l~~nLdan~~~ls~ 310 (342)
T KOG1576|consen 263 CQSRNVELGKLAMYYAMSLPGVSTVLVGMSSRQLLRINLDANFDRLSS 310 (342)
T ss_pred HHHcCccHHHHHHHHHHccCCcceEEecCchHHHHHHHHHhhhccccc
Confidence 888899999999999999863 589999999999999999 445554
No 18
>KOG1577|consensus
Probab=99.81 E-value=1.3e-20 Score=167.68 Aligned_cols=84 Identities=36% Similarity=0.568 Sum_probs=77.8
Q ss_pred CccCCCCCCchhHHHHHHhCCCeEEEeccCCCCCC-CCCCChHHHHHHHHHcCCChhHHHHHHHHhhcchhhhhcccccc
Q psy15666 1 VEFHPHFLQPQELIDVCNQNKIALQAYASLGSTSS-NPLIADSTLAQIAKVHSVSPAQVLLRWALQENFCKFIKLYHKVH 79 (339)
Q Consensus 1 ve~~~~~~~~~~~~~~~~~~~i~~~~yspL~~g~~-~~~~~~~~l~~ia~~~~~s~aqv~l~w~l~~g~~~i~~s~~~~~ 79 (339)
||||||+.| .+|++||+++||.++||||||++.. ..++.++.+++||+|||+|+|||+|||.+++|+++||++++++|
T Consensus 182 vE~HP~~~Q-~~L~~fCk~~~I~v~AYSpLg~~~~~~~ll~~~~l~~iA~K~~kt~aQIlLrw~~q~g~~vipKS~~~~R 260 (300)
T KOG1577|consen 182 VECHPYLQQ-KKLVEFCKSKGIVVTAYSPLGSPGRGSDLLEDPVLKEIAKKYNKTPAQILLRWALQRGVSVIPKSSNPER 260 (300)
T ss_pred eeccCCcCh-HHHHHHHhhCCcEEEEecCCCCCCCccccccCHHHHHHHHHhCCCHHHHHHHHHHhCCcEEEeccCCHHH
Confidence 799997655 7899999999999999999999853 24799999999999999999999999999999999999999999
Q ss_pred CCchHH
Q psy15666 80 SVSPAQ 85 (339)
Q Consensus 80 ~~~n~~ 85 (339)
+.+|..
T Consensus 261 i~eN~~ 266 (300)
T KOG1577|consen 261 IKENFK 266 (300)
T ss_pred HHHHHh
Confidence 988887
No 19
>COG0656 ARA1 Aldo/keto reductases, related to diketogulonate reductase [General function prediction only]
Probab=99.80 E-value=1.4e-20 Score=167.35 Aligned_cols=84 Identities=32% Similarity=0.517 Sum_probs=77.1
Q ss_pred CccCCCCCCchhHHHHHHhCCCeEEEeccCCCCCCCCCCChHHHHHHHHHcCCChhHHHHHHHHhhcchhhhhccccccC
Q psy15666 1 VEFHPHFLQPQELIDVCNQNKIALQAYASLGSTSSNPLIADSTLAQIAKVHSVSPAQVLLRWALQENFCKFIKLYHKVHS 80 (339)
Q Consensus 1 ve~~~~~~~~~~~~~~~~~~~i~~~~yspL~~g~~~~~~~~~~l~~ia~~~~~s~aqv~l~w~l~~g~~~i~~s~~~~~~ 80 (339)
|||||+++| .++++||++|||.++|||||++|.. ++.+++|+.||+|||+|+|||+|+|.+++|+++||++.+++++
T Consensus 164 Ie~hp~~~q-~el~~~~~~~gI~v~AysPL~~g~~--l~~~~~l~~Ia~k~g~t~AQv~L~W~i~~gv~~Ipks~~~~ri 240 (280)
T COG0656 164 IEYHPYLRQ-PELLPFCQRHGIAVEAYSPLAKGGK--LLDNPVLAEIAKKYGKTPAQVALRWHIQRGVIVIPKSTTPERI 240 (280)
T ss_pred EEeccCCCc-HHHHHHHHHcCCEEEEECCcccccc--cccChHHHHHHHHhCCCHHHHHHHHHHhCCcEEecCCCCHHHH
Confidence 799997765 6799999999999999999998732 8999999999999999999999999999999999999999998
Q ss_pred CchHHHH
Q psy15666 81 VSPAQVL 87 (339)
Q Consensus 81 ~~n~~~~ 87 (339)
.+|....
T Consensus 241 ~eN~~~~ 247 (280)
T COG0656 241 RENLAAF 247 (280)
T ss_pred HHHHhhh
Confidence 8887643
No 20
>PRK11172 dkgB 2,5-diketo-D-gluconate reductase B; Provisional
Probab=99.48 E-value=3.8e-14 Score=128.22 Aligned_cols=82 Identities=23% Similarity=0.438 Sum_probs=73.3
Q ss_pred CccCCCCCCchhHHHHHHhCCCeEEEeccCCCCCCCCCCChHHHHHHHHHcCCChhHHHHHHHHhhcchhhhhccccccC
Q psy15666 1 VEFHPHFLQPQELIDVCNQNKIALQAYASLGSTSSNPLIADSTLAQIAKVHSVSPAQVLLRWALQENFCKFIKLYHKVHS 80 (339)
Q Consensus 1 ve~~~~~~~~~~~~~~~~~~~i~~~~yspL~~g~~~~~~~~~~l~~ia~~~~~s~aqv~l~w~l~~g~~~i~~s~~~~~~ 80 (339)
+||||+.+ +.+++++|+++||++++||||++| .++.++.+.++|+++|+|++|++|+|+++++.++|||+.++++.
T Consensus 153 ~~~~~~~~-~~~ll~~~~~~gi~v~a~spl~~G---~~~~~~~l~~~a~~~~~s~aqval~w~l~~~~~~i~g~~~~~~l 228 (267)
T PRK11172 153 IELSPYLQ-NRKVVAFAKEHGIHVTSYMTLAYG---KVLKDPVIARIAAKHNATPAQVILAWAMQLGYSVIPSSTKRENL 228 (267)
T ss_pred eecCCCCC-cHHHHHHHHHCCCEEEEECCCCCC---cccCCHHHHHHHHHhCCCHHHHHHHHHHhCCCEeecCCCCHHHH
Confidence 58999764 478999999999999999999998 35678999999999999999999999999998999999999888
Q ss_pred CchHHH
Q psy15666 81 VSPAQV 86 (339)
Q Consensus 81 ~~n~~~ 86 (339)
.+|...
T Consensus 229 ~~n~~~ 234 (267)
T PRK11172 229 ASNLLA 234 (267)
T ss_pred HHHHhh
Confidence 777653
No 21
>KOG1575|consensus
Probab=99.45 E-value=5e-14 Score=128.11 Aligned_cols=93 Identities=19% Similarity=0.214 Sum_probs=74.2
Q ss_pred CccCCCCCC--chhHHHHHHhCCCeEEEeccCCCCCCCCC----------------CC--------------hHHHHHHH
Q psy15666 1 VEFHPHFLQ--PQELIDVCNQNKIALQAYASLGSTSSNPL----------------IA--------------DSTLAQIA 48 (339)
Q Consensus 1 ve~~~~~~~--~~~~~~~~~~~~i~~~~yspL~~g~~~~~----------------~~--------------~~~l~~ia 48 (339)
+|||++.+. +.+++|+|++.||++++|||||+|...+- +. -..+.+||
T Consensus 188 ~eysl~~Rd~ee~~i~~~c~~~Gi~li~ysPL~~G~Ltgk~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iA 267 (336)
T KOG1575|consen 188 VEYSLLSRDKEERGIIPLCRELGIGLIAWSPLGRGLLTGKYKLGEDSRNGDKRFQFLGLSPQTEEGDKQKPILEALSKIA 267 (336)
T ss_pred eechhhhcchhhhhHHHHHHHcCcceEEecccccceeccCcccccccccccccccccccccccchhhhHHHHHHHHHHHH
Confidence 589997665 24699999999999999999999931100 00 12488999
Q ss_pred HHcCCChhHHHHHHHHhhc--chhhhhccccccCCchHHHHHHHHhh
Q psy15666 49 KVHSVSPAQVLLRWALQEN--FCKFIKLYHKVHSVSPAQVLLRWALQ 93 (339)
Q Consensus 49 ~~~~~s~aqv~l~w~l~~g--~~~i~~s~~~~~~~~n~~~~~~~al~ 93 (339)
+|||+|++|+||+|+++++ .++|||+++.++.++|..++-....+
T Consensus 268 ~k~g~T~~qlALawv~~~~~v~~pIpG~s~ve~l~eni~Al~~~Lt~ 314 (336)
T KOG1575|consen 268 EKHGCTVPQLALAWVLSNGKVSSPIPGASKIEQLKENIGALSVKLTP 314 (336)
T ss_pred HHcCCCHHHHHHHHHHHhCCCEEecCCCCcHHHHHHHHhhhhccCCH
Confidence 9999999999999999997 58999999999999998865444444
No 22
>PRK11565 dkgA 2,5-diketo-D-gluconate reductase A; Provisional
Probab=99.44 E-value=2.2e-13 Score=123.72 Aligned_cols=84 Identities=20% Similarity=0.363 Sum_probs=73.3
Q ss_pred CccCCCCCCchhHHHHHHhCCCeEEEeccCCCCCCCCCCChHHHHHHHHHcCCChhHHHHHHHHhhcchhhhhccccccC
Q psy15666 1 VEFHPHFLQPQELIDVCNQNKIALQAYASLGSTSSNPLIADSTLAQIAKVHSVSPAQVLLRWALQENFCKFIKLYHKVHS 80 (339)
Q Consensus 1 ve~~~~~~~~~~~~~~~~~~~i~~~~yspL~~g~~~~~~~~~~l~~ia~~~~~s~aqv~l~w~l~~g~~~i~~s~~~~~~ 80 (339)
+||||++++ .+++++|+++||.+++||||++|. ...+.++.|+++|++||+|++|++|+|+++++.++|||+.+.++.
T Consensus 161 ~~~~~~~~~-~~~~~~~~~~~i~~~a~spl~~G~-~~~~~~~~l~~ia~~~g~s~aq~aL~w~l~~~~~~I~g~~~~~~i 238 (275)
T PRK11565 161 IELHPLMQQ-RQLHAWNATHKIQTESWSPLAQGG-KGVFDQKVIRDLADKYGKTPAQIVIRWHLDSGLVVIPKSVTPSRI 238 (275)
T ss_pred eecCCccch-HHHHHHHHHCCCEEEEEccCCCCC-cccccCHHHHHHHHHhCCCHHHHHHHHHHcCCCEeeCCCCCHHHH
Confidence 478997654 789999999999999999999763 235677899999999999999999999999998999999999988
Q ss_pred CchHHH
Q psy15666 81 VSPAQV 86 (339)
Q Consensus 81 ~~n~~~ 86 (339)
.+|...
T Consensus 239 ~~n~~a 244 (275)
T PRK11565 239 AENFDV 244 (275)
T ss_pred HHHHhc
Confidence 777653
No 23
>PRK09912 L-glyceraldehyde 3-phosphate reductase; Provisional
Probab=99.20 E-value=1.4e-11 Score=115.65 Aligned_cols=87 Identities=18% Similarity=0.189 Sum_probs=69.0
Q ss_pred CccCCCCCC--chhHHHHHHhCCCeEEEeccCCCCCCCCC-------------------------CC------hHHHHHH
Q psy15666 1 VEFHPHFLQ--PQELIDVCNQNKIALQAYASLGSTSSNPL-------------------------IA------DSTLAQI 47 (339)
Q Consensus 1 ve~~~~~~~--~~~~~~~~~~~~i~~~~yspL~~g~~~~~-------------------------~~------~~~l~~i 47 (339)
++||++.+. +.+++++|+++||++++||||++|..... +. .+.++++
T Consensus 194 ~~ynll~~~~~~~~ll~~~~~~gI~via~spl~~G~Lt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 273 (346)
T PRK09912 194 PSYNLLNRWVDKSGLLDTLQNNGVGCIAFTPLAQGLLTGKYLNGIPQDSRMHREGNKVRGLTPKMLTEANLNSLRLLNEM 273 (346)
T ss_pred ccCCceecccchhhHHHHHHHcCceEEEehhhcCccccCCCCCCCCCCccccccccchhhhchhhccHHHHHHHHHHHHH
Confidence 478886543 24799999999999999999999842110 00 1468899
Q ss_pred HHHcCCChhHHHHHHHHhhc--chhhhhccccccCCchHHHH
Q psy15666 48 AKVHSVSPAQVLLRWALQEN--FCKFIKLYHKVHSVSPAQVL 87 (339)
Q Consensus 48 a~~~~~s~aqv~l~w~l~~g--~~~i~~s~~~~~~~~n~~~~ 87 (339)
|+++|+|++|++|+|+++++ ..+|||+.+.++..+|....
T Consensus 274 a~~~g~t~aq~AL~w~l~~~~v~~~i~G~~~~~ql~en~~a~ 315 (346)
T PRK09912 274 AQQRGQSMAQMALSWLLKDERVTSVLIGASRAEQLEENVQAL 315 (346)
T ss_pred HHHhCCCHHHHHHHHHHhCCCCeEEEeCCCCHHHHHHHHhhh
Confidence 99999999999999999997 46899999999887776643
No 24
>PRK10625 tas putative aldo-keto reductase; Provisional
Probab=99.18 E-value=1.9e-11 Score=114.68 Aligned_cols=86 Identities=19% Similarity=0.229 Sum_probs=68.0
Q ss_pred CccCCCCCC-chhHHHHHHhCCCeEEEeccCCCCCCCC--------------CCC-------------hHHHHHHHHHcC
Q psy15666 1 VEFHPHFLQ-PQELIDVCNQNKIALQAYASLGSTSSNP--------------LIA-------------DSTLAQIAKVHS 52 (339)
Q Consensus 1 ve~~~~~~~-~~~~~~~~~~~~i~~~~yspL~~g~~~~--------------~~~-------------~~~l~~ia~~~~ 52 (339)
++||++.++ ..+++++|+++||++++||||++|...+ ++. .+.++++|++||
T Consensus 206 ~~y~l~~r~~~~~ll~~~~~~gi~via~spL~~G~Ltg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~la~~~g 285 (346)
T PRK10625 206 NPYSLLNRSFEVGLAEVSQYEGVELLAYSCLAFGTLTGKYLNGAKPAGARNTLFSRFTRYSGEQTQKAVAAYVDIAKRHG 285 (346)
T ss_pred CCCCcccccchhHHHHHHHHcCCeEEEeccccCeeccCCCCCCCCCCCcccccccccccccchhHHHHHHHHHHHHHHhC
Confidence 357775443 2479999999999999999999883110 111 246889999999
Q ss_pred CChhHHHHHHHHhhcc--hhhhhccccccCCchHHH
Q psy15666 53 VSPAQVLLRWALQENF--CKFIKLYHKVHSVSPAQV 86 (339)
Q Consensus 53 ~s~aqv~l~w~l~~g~--~~i~~s~~~~~~~~n~~~ 86 (339)
+|++|++|+|+++++. .+|+|+.+.++..+|...
T Consensus 286 ~t~aqval~w~l~~~~v~~~I~G~~~~~~l~en~~a 321 (346)
T PRK10625 286 LDPAQMALAFVRRQPFVASTLLGATTMEQLKTNIES 321 (346)
T ss_pred CCHHHHHHHHHHhCCCCeeEEeCCCCHHHHHHHHhh
Confidence 9999999999999985 479999999988777664
No 25
>TIGR01293 Kv_beta voltage-dependent potassium channel beta subunit, animal. Plant beta subunits and their closely related bacterial homologs (in Deinococcus radiudurans, Xylella fastidiosa, etc.) appear more closely related to each other than to animal forms. However, the bacterial species lack convincing counterparts the Kv alpha subunit and the Kv beta homolog may serve as an enzyme. Cutoffs are set for this model such that yeast and plant forms and bacterial close homologs score between trusted and noise cutoffs.
Probab=99.17 E-value=2.1e-11 Score=113.12 Aligned_cols=87 Identities=13% Similarity=0.200 Sum_probs=68.5
Q ss_pred CccCCCCCC--chhHHHHHHhCCCeEEEeccCCCCCCCCC------------------C-----Ch---------HHHHH
Q psy15666 1 VEFHPHFLQ--PQELIDVCNQNKIALQAYASLGSTSSNPL------------------I-----AD---------STLAQ 46 (339)
Q Consensus 1 ve~~~~~~~--~~~~~~~~~~~~i~~~~yspL~~g~~~~~------------------~-----~~---------~~l~~ 46 (339)
++||++.++ ..+++++|+++||++++||||++|...+. + .+ +.|++
T Consensus 177 ~~~~l~~r~~~e~~l~~~~~~~gi~v~a~spl~~G~Ltg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 256 (317)
T TIGR01293 177 AEYHMFQREKVEVQLPELYHKIGVGAMTWSPLACGLVSGKYDSGIPPYSRATLKGYQWLKDKILSEEGRRQQARLKDLQA 256 (317)
T ss_pred cccChHhcchhHHHHHHHHHHcCCeEEEeccccccccCCCCCCCCCCcccccccccchhhhhhcchhhHHHHHHHHHHHH
Confidence 478886543 23799999999999999999998831100 0 01 46889
Q ss_pred HHHHcCCChhHHHHHHHHhhcc--hhhhhccccccCCchHHHH
Q psy15666 47 IAKVHSVSPAQVLLRWALQENF--CKFIKLYHKVHSVSPAQVL 87 (339)
Q Consensus 47 ia~~~~~s~aqv~l~w~l~~g~--~~i~~s~~~~~~~~n~~~~ 87 (339)
+|+++|+|++|++|+|+++++. .+|+|+.+.++..+|....
T Consensus 257 ia~~~g~s~aqlal~w~l~~~~v~~~i~G~~~~~ql~en~~a~ 299 (317)
T TIGR01293 257 IAERLGCTLPQLAIAWCLRNEGVSSVLLGASSAEQLMENLGSL 299 (317)
T ss_pred HHHHHCcCHHHHHHHHHhcCCCCeEEEeCCCCHHHHHHHHHHh
Confidence 9999999999999999999953 5899999999988776653
No 26
>PRK10376 putative oxidoreductase; Provisional
Probab=99.16 E-value=3.9e-11 Score=109.87 Aligned_cols=83 Identities=24% Similarity=0.306 Sum_probs=69.5
Q ss_pred CccCCCCCCchhHHHHHHhCCCeEEEeccCCCCCCCCCCChHHHHHHHHHcCCChhHHHHHHHHhh--cchhhhhccccc
Q psy15666 1 VEFHPHFLQPQELIDVCNQNKIALQAYASLGSTSSNPLIADSTLAQIAKVHSVSPAQVLLRWALQE--NFCKFIKLYHKV 78 (339)
Q Consensus 1 ve~~~~~~~~~~~~~~~~~~~i~~~~yspL~~g~~~~~~~~~~l~~ia~~~~~s~aqv~l~w~l~~--g~~~i~~s~~~~ 78 (339)
++||+..+...+++++|+++||++++|+||+++. .+..+.++++|+++|+|++|++|+|++++ ++.+|+|+.+.+
T Consensus 186 ~~~~~~~~~~~~~~~~~~~~gi~v~a~~pL~g~~---~~~~~~l~~ia~~~~~t~aq~al~w~l~~~~~~~~i~G~~~~~ 262 (290)
T PRK10376 186 NHYNLAHRADDALIDALARDGIAYVPFFPLGGFT---PLQSSTLSDVAASLGATPMQVALAWLLQRSPNILLIPGTSSVA 262 (290)
T ss_pred cccCCCcCChHHHHHHHHHcCCEEEEeecCCCCC---hhhhHHHHHHHHHhCCCHHHHHHHHHHhCCCCeeEeeCCCCHH
Confidence 4788865444679999999999999999998541 23467899999999999999999999987 356899999999
Q ss_pred cCCchHHH
Q psy15666 79 HSVSPAQV 86 (339)
Q Consensus 79 ~~~~n~~~ 86 (339)
+..+|.+.
T Consensus 263 ~l~en~~a 270 (290)
T PRK10376 263 HLRENLAA 270 (290)
T ss_pred HHHHHHhh
Confidence 98887764
No 27
>COG0667 Tas Predicted oxidoreductases (related to aryl-alcohol dehydrogenases) [Energy production and conversion]
Probab=99.15 E-value=4.1e-11 Score=110.67 Aligned_cols=90 Identities=23% Similarity=0.263 Sum_probs=71.2
Q ss_pred CccCCCCCCc-hhHHHHHHhCCCeEEEeccCCCCCCCC---------------CCC----------hHHHHHHHHHcCCC
Q psy15666 1 VEFHPHFLQP-QELIDVCNQNKIALQAYASLGSTSSNP---------------LIA----------DSTLAQIAKVHSVS 54 (339)
Q Consensus 1 ve~~~~~~~~-~~~~~~~~~~~i~~~~yspL~~g~~~~---------------~~~----------~~~l~~ia~~~~~s 54 (339)
.+||++.++. .+++|+|+++||++++||||++|.... .+. ...++++|+++|+|
T Consensus 178 ~~ynl~~R~~e~~l~~~~~~~gi~~~~~spla~G~Ltgk~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~l~~~a~~~g~t 257 (316)
T COG0667 178 PEYNLLERDAEKELLPLCREEGIGLLAYSPLASGLLTGKYLPGPEGSRASELPRFQRELTERGLAILRALEELAKELGAT 257 (316)
T ss_pred ccCccccccchhHHHHHHHHcCCeEEEecCccccccCCCcCCCcchhhccccccchhhhhHHHHHHHHHHHHHHHHhCCC
Confidence 3688876542 459999999999999999999993111 110 02488999999999
Q ss_pred hhHHHHHHHHhhcc--hhhhhccccccCCchHHHHHHH
Q psy15666 55 PAQVLLRWALQENF--CKFIKLYHKVHSVSPAQVLLRW 90 (339)
Q Consensus 55 ~aqv~l~w~l~~g~--~~i~~s~~~~~~~~n~~~~~~~ 90 (339)
++|+||+|++.++. ++|+|+++.++..+|...+-..
T Consensus 258 ~aq~ALawvl~~~~v~~~I~Ga~~~~qL~en~~A~~~~ 295 (316)
T COG0667 258 PAQVALAWVLAQPGVTSPIVGASKAEQLEENLAALDIK 295 (316)
T ss_pred HHHHHHHHHHhCCCCceEeecCCCHHHHHHHHHHhcCC
Confidence 99999999999964 7899999999998888765443
No 28
>COG4989 Predicted oxidoreductase [General function prediction only]
Probab=99.06 E-value=1.3e-10 Score=100.13 Aligned_cols=83 Identities=22% Similarity=0.292 Sum_probs=68.6
Q ss_pred CccCCCCCC--chhHHHHHHhCCCeEEEeccCCCCCCCCCCC--------hHHHHHHHHHcC-CChhHHHHHHHHhhcc-
Q psy15666 1 VEFHPHFLQ--PQELIDVCNQNKIALQAYASLGSTSSNPLIA--------DSTLAQIAKVHS-VSPAQVLLRWALQENF- 68 (339)
Q Consensus 1 ve~~~~~~~--~~~~~~~~~~~~i~~~~yspL~~g~~~~~~~--------~~~l~~ia~~~~-~s~aqv~l~w~l~~g~- 68 (339)
||.+|+... .+..++||+++.|..|||||||.| ++|. .++|..||+++| +|..+|+++|++..|.
T Consensus 180 lelS~~~~~~~~DGtLd~~q~~~v~pmaWSpl~gG---~~F~g~~~~q~l~~~l~~ia~e~ga~s~~~VaiAWllR~Pa~ 256 (298)
T COG4989 180 LELSPLHTPMLLDGTLDYCQQLRVRPMAWSPLGGG---GLFLGDDKFQRLRKVLDRIAEEYGAVSITAVAIAWLLRHPAK 256 (298)
T ss_pred eeeccccccccccchHHHHHHcCCCcccccccCCC---ccccCCcchHHHHHHHHHHHHHhCcccHHHHHHHHHHhCcCc
Confidence 577886443 257999999999999999999999 3554 357999999999 7999999999999975
Q ss_pred -hhhhhccccccCCchHHH
Q psy15666 69 -CKFIKLYHKVHSVSPAQV 86 (339)
Q Consensus 69 -~~i~~s~~~~~~~~n~~~ 86 (339)
.+|.|+.+.++..+-+++
T Consensus 257 ~~PiiGt~~~eRi~~a~~A 275 (298)
T COG4989 257 PQPIIGTGNLERIRAAIKA 275 (298)
T ss_pred ccceecCCCHHHHHHHHHH
Confidence 789999998887655543
No 29
>PLN02587 L-galactose dehydrogenase
Probab=99.06 E-value=1.2e-10 Score=107.96 Aligned_cols=77 Identities=9% Similarity=0.082 Sum_probs=62.7
Q ss_pred hhHHHHHHhCCCeEEEeccCCCCCCCC----CC--C-------hHHHHHHHHHcCCChhHHHHHHHHhhcc--hhhhhcc
Q psy15666 11 QELIDVCNQNKIALQAYASLGSTSSNP----LI--A-------DSTLAQIAKVHSVSPAQVLLRWALQENF--CKFIKLY 75 (339)
Q Consensus 11 ~~~~~~~~~~~i~~~~yspL~~g~~~~----~~--~-------~~~l~~ia~~~~~s~aqv~l~w~l~~g~--~~i~~s~ 75 (339)
.+++++|+++||++++||||++|.... .. . ...++++|+++|+|++|++|+|+++++. .+|+|+.
T Consensus 188 ~~ll~~~~~~gi~v~a~spl~~G~L~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~~s~aq~al~~~l~~~~v~~~i~G~~ 267 (314)
T PLN02587 188 EDLLPYLKSKGVGVISASPLAMGLLTENGPPEWHPAPPELKSACAAAATHCKEKGKNISKLALQYSLSNKDISTTLVGMN 267 (314)
T ss_pred HHHHHHHHHcCceEEEechhhccccCCCCCCCCCCCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHhCCCCeeEEecCC
Confidence 489999999999999999999983111 00 0 1246789999999999999999999974 5799999
Q ss_pred ccccCCchHHHH
Q psy15666 76 HKVHSVSPAQVL 87 (339)
Q Consensus 76 ~~~~~~~n~~~~ 87 (339)
+.++.++|....
T Consensus 268 ~~~~l~~nl~a~ 279 (314)
T PLN02587 268 SVQQVEENVAAA 279 (314)
T ss_pred CHHHHHHHHHHH
Confidence 999888876654
No 30
>PRK14863 bifunctional regulator KidO; Provisional
Probab=98.97 E-value=5.3e-10 Score=102.34 Aligned_cols=88 Identities=7% Similarity=-0.066 Sum_probs=68.3
Q ss_pred CccCCCCCCc--hhHHHHHHhCCCeEEEeccCCCCCCCC-------CCC-----hHHHHHHHHHcCCChhHHHHHHHHhh
Q psy15666 1 VEFHPHFLQP--QELIDVCNQNKIALQAYASLGSTSSNP-------LIA-----DSTLAQIAKVHSVSPAQVLLRWALQE 66 (339)
Q Consensus 1 ve~~~~~~~~--~~~~~~~~~~~i~~~~yspL~~g~~~~-------~~~-----~~~l~~ia~~~~~s~aqv~l~w~l~~ 66 (339)
++|||+.++. .+++++|+++||++++||||++|.... .+. -..++++++++++|++|++|+|++++
T Consensus 163 ~~~n~l~~~~~~~~~l~~~~~~gi~v~a~spl~~G~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~aqlalaw~l~~ 242 (292)
T PRK14863 163 APASLLDQRLLADGSLQRIAGMGVEVHLRSIFLNGLLFLPPDRVPAQLKGASGRLSRVRRMIAEGRSDPLQAALGFALSR 242 (292)
T ss_pred ecCCcccccccccchHHHHHhCCCEEEEechhhCccccCCcccCccchhhhhHHHHHHHHHHHHcCCCHHHHHHHHHHhC
Confidence 5789976542 369999999999999999999983110 000 12366788888999999999999998
Q ss_pred cc--hhhhhccccccCCchHHHHH
Q psy15666 67 NF--CKFIKLYHKVHSVSPAQVLL 88 (339)
Q Consensus 67 g~--~~i~~s~~~~~~~~n~~~~~ 88 (339)
+. .+|+|+.+.++..+|+...-
T Consensus 243 p~v~~~I~G~~~~~ql~~n~~a~~ 266 (292)
T PRK14863 243 PEGSAVLVGVNSAAELSAVVAAAS 266 (292)
T ss_pred CCCCeEEEecCCHHHHHHHHHHHh
Confidence 63 57999999999888877543
No 31
>cd06660 Aldo_ket_red Aldo-keto reductases (AKRs) are a superfamily of soluble NAD(P)(H) oxidoreductases whose chief purpose is to reduce aldehydes and ketones to primary and secondary alcohols. AKRs are present in all phyla and are of importance to both health and industrial applications. Members have very distinct functions and include the prokaryotic 2,5-diketo-D-gluconic acid reductases and beta-keto ester reductases, the eukaryotic aldose reductases, aldehyde reductases, hydroxysteroid dehydrogenases, steroid 5beta-reductases, potassium channel beta-subunits and aflatoxin aldehyde reductases, among others.
Probab=98.95 E-value=1.1e-09 Score=100.04 Aligned_cols=87 Identities=29% Similarity=0.340 Sum_probs=70.6
Q ss_pred CccCCCCCCch-hHHHHHHhCCCeEEEeccCCCCCCCCCC----------ChHHHHHHHHHcCCChhHHHHHHHHhh--c
Q psy15666 1 VEFHPHFLQPQ-ELIDVCNQNKIALQAYASLGSTSSNPLI----------ADSTLAQIAKVHSVSPAQVLLRWALQE--N 67 (339)
Q Consensus 1 ve~~~~~~~~~-~~~~~~~~~~i~~~~yspL~~g~~~~~~----------~~~~l~~ia~~~~~s~aqv~l~w~l~~--g 67 (339)
++|||+.+... +++++|+++||++++|+||++|...... ..+.+..+|+++++|++|++++|++++ +
T Consensus 171 ~~~n~~~~~~~~~~~~~~~~~gi~v~~~~~l~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~q~al~~~l~~p~~ 250 (285)
T cd06660 171 VEYNLLDRQAEEELLPYCREHGIGVIAYSPLAGGLLTGKYLPGAPPPEGDLLEALKEIAEKHGVTPAQVALRWLLQQPGV 250 (285)
T ss_pred cccCcccCchHHHHHHHHHHcCcEEEEeccccCceecCCCCCCCCCChhhHHHHHHHHHHHhCCCHHHHHHHHHhcCCCC
Confidence 57899765533 5999999999999999999998421100 025688999999999999999999999 5
Q ss_pred chhhhhccccccCCchHHHH
Q psy15666 68 FCKFIKLYHKVHSVSPAQVL 87 (339)
Q Consensus 68 ~~~i~~s~~~~~~~~n~~~~ 87 (339)
.++++|+.+.++..+|.+..
T Consensus 251 ~~~i~g~~~~~~l~~n~~~~ 270 (285)
T cd06660 251 TSVIPGASSPERLEENLAAL 270 (285)
T ss_pred eEEEeCCCCHHHHHHHHhhc
Confidence 58999999999988887654
No 32
>PF00248 Aldo_ket_red: Aldo/keto reductase family; InterPro: IPR023210 The aldo-keto reductase family includes a number of related monomeric NADPH-dependent oxidoreductases, such as aldehyde reductase, aldose reductase, prostaglandin F synthase, xylose reductase, rho crystallin, and many others []. All possess a similar structure, with a beta-alpha-beta fold characteristic of nucleotide binding proteins []. The fold comprises a parallel beta-8/alpha-8-barrel, which contains a novel NADP-binding motif. The binding site is located in a large, deep, elliptical pocket in the C-terminal end of the beta sheet, the substrate being bound in an extended conformation. The hydrophobic nature of the pocket favours aromatic and apolar substrates over highly polar ones []. Binding of the NADPH coenzyme causes a massive conformational change, reorienting a loop, effectively locking the coenzyme in place. This binding is more similar to FAD- than to NAD(P)-binding oxidoreductases []. Some proteins of this entry contain a K+ ion channel beta chain regulatory domain; these are reported to have oxidoreductase activity []. This entry represents the NADP-dependent oxidoreductase domain found in these proteins.; PDB: 1C9W_A 4F40_B 1VBJ_A 1XGD_A 1X97_A 2ACS_A 1EF3_A 2ACU_A 1PWM_A 2NVD_A ....
Probab=98.81 E-value=1.8e-09 Score=98.46 Aligned_cols=86 Identities=22% Similarity=0.347 Sum_probs=65.4
Q ss_pred CccCCCC-CCchhHHHHHHhCCCeEEEeccCCCCCCCCC-----------------CChHHHHHHHHHcCCChhHHHHHH
Q psy15666 1 VEFHPHF-LQPQELIDVCNQNKIALQAYASLGSTSSNPL-----------------IADSTLAQIAKVHSVSPAQVLLRW 62 (339)
Q Consensus 1 ve~~~~~-~~~~~~~~~~~~~~i~~~~yspL~~g~~~~~-----------------~~~~~l~~ia~~~~~s~aqv~l~w 62 (339)
++||++. ...++++++|+++||++++|+||++|..... ...+.+.++|+++|+|++|++|+|
T Consensus 160 ~~~n~~~~~~~~~l~~~~~~~gi~v~a~~~l~~G~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~g~s~~q~al~~ 239 (283)
T PF00248_consen 160 INYNLLNRREEEGLLEFCREHGIGVIAYSPLAGGLLTGKYKSPPPPPSRASLRDAQELADALRELAEEHGVSPAQLALRW 239 (283)
T ss_dssp EE-BTTBHBGGHHHHHHHHHTT-EEEEESTTGGGCGGTTTTTTTTSTTTSGSSTHGGGHHHHHHHHHHHTSSHHHHHHHH
T ss_pred cccccccccccccccccccccccccccccccccCccccccccCCCcccccccchhhhhhhhhhhhhhhcccccchhhhhh
Confidence 3678851 2246899999999999999999999841100 234689999999999999999999
Q ss_pred HHhh--cchhhhhccccccCCchHHH
Q psy15666 63 ALQE--NFCKFIKLYHKVHSVSPAQV 86 (339)
Q Consensus 63 ~l~~--g~~~i~~s~~~~~~~~n~~~ 86 (339)
++++ +.++++|+.++++..+|...
T Consensus 240 ~l~~~~~~~~i~g~~~~~~l~en~~a 265 (283)
T PF00248_consen 240 VLSHPGVASVIVGASSPEHLEENLAA 265 (283)
T ss_dssp HHTSHTTEEEEEB-SSHHHHHHHHGG
T ss_pred hhhccccccccCCCCCHHHHHHHHHH
Confidence 9965 56899999998887666654
No 33
>KOG3023|consensus
Probab=98.67 E-value=4.8e-08 Score=83.59 Aligned_cols=133 Identities=28% Similarity=0.422 Sum_probs=97.5
Q ss_pred CCCceEEEeccCCCCCCCHHHHHHHHHHHHHhcCC----CcccEE------EeecC-----CC----CCCCC---CCCcc
Q psy15666 127 KREDIFITSKLSPQYNGNADQVKSLVAQTLKDLGT----TYLDLF------LIHWP-----GT----FGVDS---SSPQQ 184 (339)
Q Consensus 127 ~R~~~~i~tK~~~~~~~~~~~~~~~~~~sL~~L~~----d~iDl~------~lH~~-----~~----~~~~~---~~~~~ 184 (339)
.++++-+.-|.+..++.. +.++...++.++-+-. .-+|.+ +.|.. .. ...++ .....
T Consensus 73 ~~~E~si~vklf~ndh~~-e~in~~eeelmkVf~~lh~v~~id~~st~~v~~~~~~~l~v~~lssv~ia~~sied~~n~~ 151 (285)
T KOG3023|consen 73 KQEEYSIIVKLFFNDHEN-EDINKREEELMKVFYNLHMVFGIDFVSTLVVSFPHITFLKVSGLSSVNIAYDSIEDIPNQE 151 (285)
T ss_pred cccccceeeEEeecccch-hhhcHHHHHHHHHHHHHHHHhhhhhhhhhhhhcccceeecccCccchhccCChhhhcchhh
Confidence 467777888888777666 6666666665554321 122221 11211 00 00111 11122
Q ss_pred cccHHHHHHHHHHhhCCCCCCccEEEecCCCHHHHHHHHHcCCCceeEeccccCCCCCCcHHHHHHHHhCCceEEEec
Q psy15666 185 ISNRHTLWNALTELYNPNNGPLKSIGVSNYTAKHLVNLIQNSKVVPAVNQVEFHPHFLQPQELIDVCNQNKIALQAYA 262 (339)
Q Consensus 185 ~~~~~~~~~~l~~l~~~~~G~ir~iGvS~~~~~~l~~~~~~~~~~~~~~q~~~~~~~~~~~~l~~~~~~~gi~v~~~~ 262 (339)
.+.+.++|+.||+++.+ |+|..||||.|+..++++++..+.++|..+|+++.-++.-+.++.++|.+++|.+...+
T Consensus 152 ~e~lkplwk~LE~lv~~--~kI~~lGvSDfda~qLe~Li~saqVvP~snqVnL~~cCvvPpdLqafa~~hdiQLltHs 227 (285)
T KOG3023|consen 152 IESLKPLWKLLEELVGE--GKIGTLGVSDFDANQLERLISSAQVVPESNQVNLGQCCVVPPDLQAFADRHDIQLLTHS 227 (285)
T ss_pred HHHHHHHHHHHHHHhcc--CceeeeeecccCHHHHHHHHhhhccccccceeeccccccCCHHHHHHhhhcceeeeecC
Confidence 34578999999999999 99999999999999999999999999999999999999999999999999999998865
No 34
>COG1453 Predicted oxidoreductases of the aldo/keto reductase family [General function prediction only]
Probab=96.13 E-value=0.0089 Score=55.22 Aligned_cols=71 Identities=15% Similarity=0.169 Sum_probs=58.5
Q ss_pred hHHHHHHhCCCeEEEeccCCCCCCCCCCC--hHHHHHHHHHcC--CChhHHHHHHHHhhcc--hhhhhccccccCCchHH
Q psy15666 12 ELIDVCNQNKIALQAYASLGSTSSNPLIA--DSTLAQIAKVHS--VSPAQVLLRWALQENF--CKFIKLYHKVHSVSPAQ 85 (339)
Q Consensus 12 ~~~~~~~~~~i~~~~yspL~~g~~~~~~~--~~~l~~ia~~~~--~s~aqv~l~w~l~~g~--~~i~~s~~~~~~~~n~~ 85 (339)
+-+++|.++|++++.-+|+.+|. ++. -+.+++|.++++ .||+..+++|+++++- ++++|...+++.++|..
T Consensus 187 ~~l~~A~~~~~gI~IMeP~~gG~---l~~~vP~~~~~l~~~~~~~~sP~~wa~R~~~shp~V~~vlsGm~~~~~l~enLk 263 (391)
T COG1453 187 EGLKYAASKGLGIFIMEPLDGGG---LLYNVPEKLEELCRPASPKRSPAEWALRYLLSHPEVTTVLSGMNTPEQLEENLK 263 (391)
T ss_pred HHHHHHHhCCCcEEEEeeCCCCC---cccCCCHHHHHHHHhcCCCCCcHHHHHHHHhcCCCeEEEecCCCCHHHHHHHHH
Confidence 89999999999999999999983 443 267999999987 5899999999999974 57777777776665554
No 35
>PRK10558 alpha-dehydro-beta-deoxy-D-glucarate aldolase; Provisional
Probab=89.08 E-value=3.3 Score=37.13 Aligned_cols=94 Identities=17% Similarity=0.173 Sum_probs=73.4
Q ss_pred CCccEEEe-cCCCHHHHHHHHHcCCCceeEeccccCCCCCCc-HHHHHHHHhCCceEEEecchhHHHHHHHHHcCCCHHH
Q psy15666 204 GPLKSIGV-SNYTAKHLVNLIQNSKVVPAVNQVEFHPHFLQP-QELIDVCNQNKIALQAYASLGSTSTQIAKVHSVSPAQ 281 (339)
Q Consensus 204 G~ir~iGv-S~~~~~~l~~~~~~~~~~~~~~q~~~~~~~~~~-~~l~~~~~~~gi~v~~~~~l~~~l~~la~~~~~s~~~ 281 (339)
|+. -+|+ .......+.+++...++++.++-.+..+++... ..++..|+..|+..+++-|-. ++
T Consensus 17 g~~-~~g~~~~~~sp~~~e~~a~~G~D~v~iD~EHg~~~~~~~~~~i~a~~~~g~~~lVRvp~~------------~~-- 81 (256)
T PRK10558 17 KQV-QIGCWSALANPITTEVLGLAGFDWLVLDGEHAPNDVSTFIPQLMALKGSASAPVVRVPTN------------EP-- 81 (256)
T ss_pred CCc-eEEEEEcCCCcHHHHHHHhcCCCEEEEccccCCCCHHHHHHHHHHHhhcCCCcEEECCCC------------CH--
Confidence 664 4554 445556777888888899999999999988774 678889999999999887765 33
Q ss_pred HHHHHHhhCCc--EEecCCCCHHHHHHhhcC-CC
Q psy15666 282 VLLRWALQENF--LIIPKSVTPERIVQNIAL-DF 312 (339)
Q Consensus 282 ~al~~~l~~~~--~~i~g~~~~~~l~enl~~-~~ 312 (339)
..+..+|..|. +++|-..+.+++++.+++ .+
T Consensus 82 ~~i~r~LD~Ga~giivP~v~tae~a~~~v~a~ky 115 (256)
T PRK10558 82 VIIKRLLDIGFYNFLIPFVETAEEARRAVASTRY 115 (256)
T ss_pred HHHHHHhCCCCCeeeecCcCCHHHHHHHHHHcCC
Confidence 45677888874 689999999999999877 54
No 36
>PF07021 MetW: Methionine biosynthesis protein MetW; InterPro: IPR010743 This family consists of several bacterial and one archaeal methionine biosynthesis MetW proteins. Biosynthesis of methionine from homoserine in Pseudomonas putida takes place in three steps. The first step is the acylation of homoserine to yield an acyl-L-homoserine. This reaction is catalysed by the products of the metXW genes and is equivalent to the first step in enterobacteria, Gram-positive bacteria and fungi, except that in these microorganisms the reaction is catalysed by a single polypeptide (the product of the metA gene in Escherichia coli and the met5 gene product in Neurospora crassa). In P. putida, as in Gram-positive bacteria and certain fungi, the second and third steps are a direct sulphydrylation that converts the O-acyl-L-homoserine into homocysteine and further methylation to yield methionine. The latter reaction can be mediated by either of the two methionine synthetases present in the cells [].
Probab=88.64 E-value=3 Score=35.51 Aligned_cols=102 Identities=12% Similarity=0.141 Sum_probs=72.4
Q ss_pred HHHHHHHhcCCCcccEEEeecCCCCCCCCCCCcccccHHHHHHHHHHhhCCCCCCccEEEecCCCHHHHHHHHHcCCCce
Q psy15666 151 LVAQTLKDLGTTYLDLFLIHWPGTFGVDSSSPQQISNRHTLWNALTELYNPNNGPLKSIGVSNYTAKHLVNLIQNSKVVP 230 (339)
Q Consensus 151 ~~~~sL~~L~~d~iDl~~lH~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~G~ir~iGvS~~~~~~l~~~~~~~~~~~ 230 (339)
.+++.|....-+.+|.+.+... ...+....+.|+++.+- |+=--|++.||..+...--+-..+-.|
T Consensus 63 Dld~gL~~f~d~sFD~VIlsqt------------LQ~~~~P~~vL~EmlRV--gr~~IVsFPNFg~W~~R~~l~~~GrmP 128 (193)
T PF07021_consen 63 DLDEGLADFPDQSFDYVILSQT------------LQAVRRPDEVLEEMLRV--GRRAIVSFPNFGHWRNRLQLLLRGRMP 128 (193)
T ss_pred CHHHhHhhCCCCCccEEehHhH------------HHhHhHHHHHHHHHHHh--cCeEEEEecChHHHHHHHHHHhcCCCC
Confidence 3555666777777887777643 11133344456666666 887889999999887776555445567
Q ss_pred eEeccccCCCCCCc------HHHHHHHHhCCceEEEecchhH
Q psy15666 231 AVNQVEFHPHFLQP------QELIDVCNQNKIALQAYASLGS 266 (339)
Q Consensus 231 ~~~q~~~~~~~~~~------~~l~~~~~~~gi~v~~~~~l~~ 266 (339)
..-.+||.-++..+ .+..++|++.|+.+.-..++.+
T Consensus 129 vt~~lPy~WYdTPNih~~Ti~DFe~lc~~~~i~I~~~~~~~~ 170 (193)
T PF07021_consen 129 VTKALPYEWYDTPNIHLCTIKDFEDLCRELGIRIEERVFLDG 170 (193)
T ss_pred CCCCCCCcccCCCCcccccHHHHHHHHHHCCCEEEEEEEEcC
Confidence 78889998777652 7889999999999998777753
No 37
>PRK10128 2-keto-3-deoxy-L-rhamnonate aldolase; Provisional
Probab=87.34 E-value=5.6 Score=35.91 Aligned_cols=96 Identities=17% Similarity=0.096 Sum_probs=73.9
Q ss_pred CCccEEEecCCCHHHHHHHHHcCCCceeEeccccCCCCCCc-HHHHHHHHhCCceEEEecchhHHHHHHHHHcCCCHHHH
Q psy15666 204 GPLKSIGVSNYTAKHLVNLIQNSKVVPAVNQVEFHPHFLQP-QELIDVCNQNKIALQAYASLGSTSTQIAKVHSVSPAQV 282 (339)
Q Consensus 204 G~ir~iGvS~~~~~~l~~~~~~~~~~~~~~q~~~~~~~~~~-~~l~~~~~~~gi~v~~~~~l~~~l~~la~~~~~s~~~~ 282 (339)
|+.-.-.........+.+++...++++.++-.+..+++... ..++..++..|+..+++-|-. ++ .
T Consensus 16 G~~~~G~~~~~~sp~~~E~~a~~GfD~v~iD~EHg~~~~~~l~~~i~a~~~~g~~~lVRvp~~------------~~--~ 81 (267)
T PRK10128 16 GEVQIGLWLSSTTSYMAEIAATSGYDWLLIDGEHAPNTIQDLYHQLQAIAPYASQPVIRPVEG------------SK--P 81 (267)
T ss_pred CCceEEEEecCCCcHHHHHHHHcCCCEEEEccccCCCCHHHHHHHHHHHHhcCCCeEEECCCC------------CH--H
Confidence 66533333445556777777778899999999999988775 568888999999988877764 23 4
Q ss_pred HHHHHhhCCc--EEecCCCCHHHHHHhhcC-CCC
Q psy15666 283 LLRWALQENF--LIIPKSVTPERIVQNIAL-DFE 313 (339)
Q Consensus 283 al~~~l~~~~--~~i~g~~~~~~l~enl~~-~~~ 313 (339)
.+..+|..|. +++|-..|.++.++.+++ .+|
T Consensus 82 ~i~r~LD~GA~GIivP~V~saeeA~~~V~a~rYp 115 (267)
T PRK10128 82 LIKQVLDIGAQTLLIPMVDTAEQARQVVSATRYP 115 (267)
T ss_pred HHHHHhCCCCCeeEecCcCCHHHHHHHHHhcCCC
Confidence 5678899884 699999999999999988 653
No 38
>TIGR03239 GarL 2-dehydro-3-deoxyglucarate aldolase. In E. coli this enzyme (GarL, ) 2-dehydro-3-deoxyglucarate aldolase acts in the catabolism of several sugars including D-galactarate, D-glucarate and L-idarate. In fact, 5-dehydro-4-deoxy-D-glucarate aldolase is a synonym for this enzyme as it is unclear in the literature whether the enzyme acts on only one of these or, as seems likely, has no preference. (Despite the apparent large difference in substrate stucture indicated by their names, 2-DH-3DO- and 5-DH-4DO-glucarate differ only by the chirality of most central hydroxyl-bearing carbon and is alternately named 2-DH-3DO-galactarate.) The reported product of D-galactarate dehydratase (4.2.1.42) is the 5DH-4DO-glucarate isomer and this enzyme is found proximal to the aldolase in many genomes (GenProp0714) where no epimerase is known. Similarly, the product of D-glucarate dehydratase (4.2.1.40) is again the 5-DH-4DO isomer, so the provenance of the 2-DH-3DO-glucarate isomer for which
Probab=86.75 E-value=5.1 Score=35.74 Aligned_cols=94 Identities=15% Similarity=0.138 Sum_probs=72.5
Q ss_pred CCccEEEe-cCCCHHHHHHHHHcCCCceeEeccccCCCCCCc-HHHHHHHHhCCceEEEecchhHHHHHHHHHcCCCHHH
Q psy15666 204 GPLKSIGV-SNYTAKHLVNLIQNSKVVPAVNQVEFHPHFLQP-QELIDVCNQNKIALQAYASLGSTSTQIAKVHSVSPAQ 281 (339)
Q Consensus 204 G~ir~iGv-S~~~~~~l~~~~~~~~~~~~~~q~~~~~~~~~~-~~l~~~~~~~gi~v~~~~~l~~~l~~la~~~~~s~~~ 281 (339)
|+. .+|+ ++.....+.+++...++++.++-.+..+++... ..++..++..|+..+++-|-. ++
T Consensus 10 g~~-~~G~~~~~~sp~~~e~~a~~G~D~v~iD~EHg~~~~~~~~~~~~a~~~~g~~~~VRvp~~------------~~-- 74 (249)
T TIGR03239 10 RET-LIGCWSALGNPITTEVLGLAGFDWLLLDGEHAPNDVLTFIPQLMALKGSASAPVVRPPWN------------EP-- 74 (249)
T ss_pred CCc-eEEEEEcCCCcHHHHHHHhcCCCEEEEecccCCCCHHHHHHHHHHHhhcCCCcEEECCCC------------CH--
Confidence 654 3443 445556777878888899999999999988774 678888899999998887765 33
Q ss_pred HHHHHHhhCCc--EEecCCCCHHHHHHhhcC-CC
Q psy15666 282 VLLRWALQENF--LIIPKSVTPERIVQNIAL-DF 312 (339)
Q Consensus 282 ~al~~~l~~~~--~~i~g~~~~~~l~enl~~-~~ 312 (339)
..++.+|..|. +++|-.++.++.++.+++ .+
T Consensus 75 ~~i~r~LD~Ga~gIivP~v~taeea~~~v~a~ky 108 (249)
T TIGR03239 75 VIIKRLLDIGFYNFLIPFVESAEEAERAVAATRY 108 (249)
T ss_pred HHHHHHhcCCCCEEEecCcCCHHHHHHHHHHcCC
Confidence 45577888874 689999999999999977 55
No 39
>cd01973 Nitrogenase_VFe_beta_like Nitrogenase_VFe_beta -like: Nitrogenase VFe protein, beta subunit like. This group contains proteins similar to the beta subunits of the VFe protein of the vanadium-dependent (V-) nitrogenase. Nitrogenase catalyzes the ATP-dependent reduction of dinitrogen (N2) to ammonia. In addition to V-nitrogenase there is a molybdenum (Mo)-dependent nitrogenase and an iron only (Fe-) nitrogenase. The Mo-nitrogenase is the most widespread and best characterized of these systems. These systems consist of component 1 (VFe protein, FeFe protein or, MoFe protein respectively) and, component 2 (Fe protein). MoFe is an alpha2beta2 tetramer, V-and Fe- nitrogenases are alpha2beta2delta2 hexamers. The alpha and beta subunits of VFe and FeFe are similar to the alpha and beta subunits of MoFe. For MoFe each alphabeta pair contains one P-cluster (at the alphabeta interface) and, one molecule of iron molybdenum cofactor (FeMoco) contained within the alpha subunit. The Fe p
Probab=83.30 E-value=12 Score=36.53 Aligned_cols=121 Identities=14% Similarity=0.221 Sum_probs=67.2
Q ss_pred cccccccCHHHHHHHHHhhcccCCCCC-CceEEEeccCCCCCCCHHHHHHHHHHHHHhcCCC----cccEEEeecCCCCC
Q psy15666 102 DTAQEYGNEASIGRALKVLLPKFNLKR-EDIFITSKLSPQYNGNADQVKSLVAQTLKDLGTT----YLDLFLIHWPGTFG 176 (339)
Q Consensus 102 Dta~~y~~E~~lG~al~~~~~~~~~~R-~~~~i~tK~~~~~~~~~~~~~~~~~~sL~~L~~d----~iDl~~lH~~~~~~ 176 (339)
+..-.||.|+.+-++|++....+ +. +=++|.|-+.+.-.+ +++..-+++.=++++-+ .+.++.+|.|++.+
T Consensus 63 E~d~VfGG~~~L~~~I~~~~~~~--~~p~~I~V~tTC~~eiIG--DDi~~vv~~~~~~~~~e~~~~~~~vi~v~tpgF~G 138 (454)
T cd01973 63 EDSAVFGGAKRVEEGVLVLARRY--PDLRVIPIITTCSTEIIG--DDIEGVIRKLNEALKEEFPDREVHLIPVHTPSFKG 138 (454)
T ss_pred CCceEECcHHHHHHHHHHHHHhc--CCCCEEEEECCchHhhhc--cCHHHHHHHHHhhhhhccCCCCCeEEEeeCCCcCC
Confidence 34458898888889998765442 22 336777776543222 23444444433333111 47889999997653
Q ss_pred CCCCCCcccccHHHHHHHHHH-hhC--CCCCCccEEEecC--CCHHHHHHHHHcCCCceeE
Q psy15666 177 VDSSSPQQISNRHTLWNALTE-LYN--PNNGPLKSIGVSN--YTAKHLVNLIQNSKVVPAV 232 (339)
Q Consensus 177 ~~~~~~~~~~~~~~~~~~l~~-l~~--~~~G~ir~iGvS~--~~~~~l~~~~~~~~~~~~~ 232 (339)
. .......+++++-+ +.. +.+++|--||-.+ .+.+.+.++++..++++.+
T Consensus 139 s------~~~G~~~a~~ali~~~~~~~~~~~~VNii~~~~~~~D~~ei~~lL~~~Gl~v~~ 193 (454)
T cd01973 139 S------MVTGYDEAVRSVVKTIAKKGAPSGKLNVFTGWVNPGDVVELKHYLSEMDVEANI 193 (454)
T ss_pred C------HHHHHHHHHHHHHHHhcccCCCCCcEEEECCCCChHHHHHHHHHHHHcCCCEEE
Confidence 1 11123333333322 221 1237788887443 3347788888888775543
No 40
>TIGR02311 HpaI 2,4-dihydroxyhept-2-ene-1,7-dioic acid aldolase. This model represents the aldolase which performs the final step unique to the 4-hydroxyphenylacetic acid catabolism pathway in which 2,4-dihydroxyhept-2-ene-1,7-dioic acid is split into pyruvate and succinate-semialdehyde. The gene for enzyme is generally found adjacent to other genes for this pathway organized into an operon.
Probab=80.52 E-value=17 Score=32.46 Aligned_cols=94 Identities=15% Similarity=0.193 Sum_probs=66.8
Q ss_pred CCccEEEe-cCCCHHHHHHHHHcCCCceeEeccccCCCCCCc-HHHHHHHHhCCceEEEecchhHHHHHHHHHcCCCHHH
Q psy15666 204 GPLKSIGV-SNYTAKHLVNLIQNSKVVPAVNQVEFHPHFLQP-QELIDVCNQNKIALQAYASLGSTSTQIAKVHSVSPAQ 281 (339)
Q Consensus 204 G~ir~iGv-S~~~~~~l~~~~~~~~~~~~~~q~~~~~~~~~~-~~l~~~~~~~gi~v~~~~~l~~~l~~la~~~~~s~~~ 281 (339)
|+. -+|+ .......+.+.+...++++.++-++.++++.+. ..++..++..|+.++++-|-. ++.
T Consensus 10 g~~-~~g~~~~~~~p~~~e~~~~~g~D~v~iDlEH~~~~~~~~~~~~~a~~~~g~~~~VRv~~~------------~~~- 75 (249)
T TIGR02311 10 GQP-QIGLWLGLADPYAAEICAGAGFDWLLIDGEHAPNDVRTILSQLQALAPYPSSPVVRPAIG------------DPV- 75 (249)
T ss_pred CCc-eEEEEEeCCCcHHHHHHHhcCCCEEEEeccCCCCCHHHHHHHHHHHHhcCCCcEEECCCC------------CHH-
Confidence 664 3443 233334555556666788899999999875553 457777778888888876553 332
Q ss_pred HHHHHHhhCCc--EEecCCCCHHHHHHhhcC-CC
Q psy15666 282 VLLRWALQENF--LIIPKSVTPERIVQNIAL-DF 312 (339)
Q Consensus 282 ~al~~~l~~~~--~~i~g~~~~~~l~enl~~-~~ 312 (339)
.++.++..|. +++|...+++++++.+++ .+
T Consensus 76 -~i~~~Ld~Ga~gIivP~v~s~e~a~~~v~~~~y 108 (249)
T TIGR02311 76 -LIKQLLDIGAQTLLVPMIETAEQAEAAVAATRY 108 (249)
T ss_pred -HHHHHhCCCCCEEEecCcCCHHHHHHHHHHcCC
Confidence 5688888874 799999999999999987 54
No 41
>PF03102 NeuB: NeuB family; InterPro: IPR013132 NeuB is the prokaryotic N-acetylneuraminic acid synthase (Neu5Ac). It catalyses the direct formation of Neu5Ac (the most common sialic acid) by condensation of phosphoenolpyruvate (PEP) and N-acetylmannosamine (ManNAc). This reaction has only been observed in prokaryotes; eukaryotes synthesise the 9-phosphate form, Neu5Ac-9-P, and utilise ManNAc-6-P instead of ManNAc. Such eukaryotic enzymes are not present in this family []. This family also contains SpsE spore coat polysaccharide biosynthesis proteins.; GO: 0016051 carbohydrate biosynthetic process; PDB: 3G8R_B 1XUU_A 1XUZ_A 3CM4_A 2ZDR_A 1VLI_A 2WQP_A.
Probab=80.24 E-value=19 Score=32.01 Aligned_cols=74 Identities=16% Similarity=0.240 Sum_probs=36.0
Q ss_pred CCceEEEeccCCCCCCCHHHHHHHHHHHHHhcCCCcccEEEeecCCCCCCCCCCCcccccHHHHHHHHHHhhCCCCCCcc
Q psy15666 128 REDIFITSKLSPQYNGNADQVKSLVAQTLKDLGTTYLDLFLIHWPGTFGVDSSSPQQISNRHTLWNALTELYNPNNGPLK 207 (339)
Q Consensus 128 R~~~~i~tK~~~~~~~~~~~~~~~~~~sL~~L~~d~iDl~~lH~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~G~ir 207 (339)
...++|+|=.+.. +++.++++.-.++- .-|+.++|+...-....++ .....+..|.+.. | -
T Consensus 113 gkPvIlSTG~stl-----~EI~~Av~~~~~~~---~~~l~llHC~s~YP~~~e~-----~NL~~i~~L~~~f----~--~ 173 (241)
T PF03102_consen 113 GKPVILSTGMSTL-----EEIERAVEVLREAG---NEDLVLLHCVSSYPTPPED-----VNLRVIPTLKERF----G--V 173 (241)
T ss_dssp -S-EEEE-TT--H-----HHHHHHHHHHHHHC---T--EEEEEE-SSSS--GGG-------TTHHHHHHHHS----T--S
T ss_pred CCcEEEECCCCCH-----HHHHHHHHHHHhcC---CCCEEEEecCCCCCCChHH-----cChHHHHHHHHhc----C--C
Confidence 4458888865443 66777776664443 4689999998432111111 1223444444443 4 4
Q ss_pred EEEecCCCHHHHH
Q psy15666 208 SIGVSNYTAKHLV 220 (339)
Q Consensus 208 ~iGvS~~~~~~l~ 220 (339)
-||.|.|+.....
T Consensus 174 ~vG~SDHt~g~~~ 186 (241)
T PF03102_consen 174 PVGYSDHTDGIEA 186 (241)
T ss_dssp EEEEEE-SSSSHH
T ss_pred CEEeCCCCCCcHH
Confidence 7899999975433
No 42
>PRK04452 acetyl-CoA decarbonylase/synthase complex subunit delta; Provisional
Probab=79.06 E-value=16 Score=33.81 Aligned_cols=113 Identities=13% Similarity=0.127 Sum_probs=65.8
Q ss_pred HHHhcCCCcccEEEeec-CCCCCCCCCCCcccccHHHHHHHHHHhhCCCCCCccEEEecCC---CHHHHHHHHHcCC-Cc
Q psy15666 155 TLKDLGTTYLDLFLIHW-PGTFGVDSSSPQQISNRHTLWNALTELYNPNNGPLKSIGVSNY---TAKHLVNLIQNSK-VV 229 (339)
Q Consensus 155 sL~~L~~d~iDl~~lH~-~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~G~ir~iGvS~~---~~~~l~~~~~~~~-~~ 229 (339)
.-+.+|.|+||+-+.-. |.. .....+....+.+...+..+- -++ |..|.. +++.+++.++.+. -+
T Consensus 84 q~~~~GAd~Idl~~~s~dp~~------~d~~~~e~~~~Vk~V~eavd~--PL~--Id~s~n~~kD~evleaale~~~g~~ 153 (319)
T PRK04452 84 CVEEYGADMITLHLISTDPNG------KDKSPEEAAKTVEEVLQAVDV--PLI--IGGSGNPEKDAEVLEKVAEAAEGER 153 (319)
T ss_pred HHHHhCCCEEEEECCCCCccc------ccchHHHHHHHHHHHHHhCCC--CEE--EecCCCCCCCHHHHHHHHHHhCCCC
Confidence 34578888888654322 100 000111133344444433333 333 666643 7789999998774 33
Q ss_pred eeEeccccCCCCCCcHHHHHHHHhCCceEEEecchhH----HHHHHHHHcCCCHHH
Q psy15666 230 PAVNQVEFHPHFLQPQELIDVCNQNKIALQAYASLGS----TSTQIAKVHSVSPAQ 281 (339)
Q Consensus 230 ~~~~q~~~~~~~~~~~~l~~~~~~~gi~v~~~~~l~~----~l~~la~~~~~s~~~ 281 (339)
|.++-..... -+.+.+.|+++|..+++.+|..= .+...+.++|+++..
T Consensus 154 pLInSat~en----~~~i~~lA~~y~~~Vva~s~~Dln~ak~L~~~l~~~Gi~~ed 205 (319)
T PRK04452 154 CLLGSAEEDN----YKKIAAAAMAYGHAVIAWSPLDINLAKQLNILLTELGVPRER 205 (319)
T ss_pred CEEEECCHHH----HHHHHHHHHHhCCeEEEEcHHHHHHHHHHHHHHHHcCCCHHH
Confidence 5555444321 26899999999999999986643 555566677764443
No 43
>TIGR02932 vnfK_nitrog V-containing nitrogenase, beta subunit. Nitrogenase is the enzyme of biological nitrogen fixation. The most wide-spread and most efficient nitrogenase contains a molybdenum cofactor. This protein family, VnfK, represents the beta subunit of the vanadium (V)-containing alternative nitrogenase. It is homologous to NifK and AnfK, of the molybdenum-containing and the iron (Fe)-only types, respectively.
Probab=78.62 E-value=37 Score=33.27 Aligned_cols=123 Identities=15% Similarity=0.178 Sum_probs=68.7
Q ss_pred cccccccCHHHHHHHHHhhcccCCCCCCceEEEeccCCCCCCCHHHHHHHHHHHHHhcCCC----cccEEEeecCCCCCC
Q psy15666 102 DTAQEYGNEASIGRALKVLLPKFNLKREDIFITSKLSPQYNGNADQVKSLVAQTLKDLGTT----YLDLFLIHWPGTFGV 177 (339)
Q Consensus 102 Dta~~y~~E~~lG~al~~~~~~~~~~R~~~~i~tK~~~~~~~~~~~~~~~~~~sL~~L~~d----~iDl~~lH~~~~~~~ 177 (339)
+..-.||.|+.+-++|++....+. +.+=++|.|-+.+.-.+ +++..-+++.-++|.-+ .+.++.+|.|++.+.
T Consensus 66 E~dvVfGG~~kL~~aI~~~~~~~~-~p~~I~V~ttC~~eiIG--DDi~~v~~~~~~~~~~e~~~~~~~vv~v~tpgF~gs 142 (457)
T TIGR02932 66 EESAVFGGAKRIEEGVLTLARRYP-NLRVIPIITTCSTETIG--DDIEGSIRKVNRALKKEFPDRKIKLVPVHTPSFKGS 142 (457)
T ss_pred CCceEECcHHHHHHHHHHHHHhCC-CCCEEEEECCchHHhhc--CCHHHHHHHHHhhhhhhcCCCCCeEEEeeCCCCcCc
Confidence 344588999999999988754421 12336676666443222 34555554432222211 468899999976531
Q ss_pred CCCCCcccccHHHHHHHHHHhh----CCCCCCccEEEecCC--CHHHHHHHHHcCCCceeEe
Q psy15666 178 DSSSPQQISNRHTLWNALTELY----NPNNGPLKSIGVSNY--TAKHLVNLIQNSKVVPAVN 233 (339)
Q Consensus 178 ~~~~~~~~~~~~~~~~~l~~l~----~~~~G~ir~iGvS~~--~~~~l~~~~~~~~~~~~~~ 233 (339)
.......+++++-+.. .+++++|--||-.+. +.+.++++++..++++.++
T Consensus 143 ------~~~G~~~a~~ali~~~~~~~~~~~~~VNii~~~~~~gD~~eik~lL~~~Gl~vn~l 198 (457)
T TIGR02932 143 ------QVTGYAECVKSVIKTIAAKKGEPSGKLNVFPGWVNPGDVVLLKHYFSEMGVDANIL 198 (457)
T ss_pred ------HHHHHHHHHHHHHHHHhhccCCCCCcEEEECCCCChHHHHHHHHHHHHcCCCEEEE
Confidence 1112444444333221 122377888864432 4468888898887765543
No 44
>cd01976 Nitrogenase_MoFe_alpha Nitrogenase_MoFe_alpha_II: Nitrogenase MoFe protein, beta subunit. A group of proteins similar to the alpha subunit of the MoFe protein of the molybdenum (Mo-) nitrogenase. The nitrogenase enzyme catalyzes the ATP-dependent reduction of dinitrogen to ammonia. The Mo-nitrogenase is the most widespread and best characterized of these systems. Mo-nitrogenase consists of the MoFe protein (component 1) and the Fe protein (component 2). MoFe is an alpha2beta2 tetramer. Each alphabeta pair of MoFe contains one P-cluster (at the alphabeta interface) and, one molecule of iron molybdenum cofactor (FeMoco) contained within the alpha subunit. The Fe protein contains a single [4Fe-4S] cluster. Electrons are transferred from the [4Fe-4S] cluster of the Fe protein to the P-cluster of the MoFe and in turn to FeMoCo, the site of substrate reduction.
Probab=76.50 E-value=76 Score=30.67 Aligned_cols=169 Identities=15% Similarity=0.175 Sum_probs=94.0
Q ss_pred ccccccCHHHHHHHHHhhcccCCCCCCceEEEeccCCCCCCCHHHHHHHHHHHHHhcCCCcccEEEeecCCCCCCCCCCC
Q psy15666 103 TAQEYGNEASIGRALKVLLPKFNLKREDIFITSKLSPQYNGNADQVKSLVAQTLKDLGTTYLDLFLIHWPGTFGVDSSSP 182 (339)
Q Consensus 103 ta~~y~~E~~lG~al~~~~~~~~~~R~~~~i~tK~~~~~~~~~~~~~~~~~~sL~~L~~d~iDl~~lH~~~~~~~~~~~~ 182 (339)
..-.||.|+.+-++|++....+. +.+-++|.|-+.+.-.+ +++..-+++.-++++ ++++.+|.|++.+.....
T Consensus 76 ~dvVfGg~~kL~~~I~~~~~~~~-p~~~I~V~tTC~~~iIG--dDi~~v~~~~~~~~~---~pvi~v~t~gf~g~s~~~- 148 (421)
T cd01976 76 KDIVFGGDKKLAKAIDEAYELFP-LNKGISVQSECPVGLIG--DDIEAVARKASKELG---IPVVPVRCEGFRGVSQSL- 148 (421)
T ss_pred cceecCCHHHHHHHHHHHHHhCC-CccEEEEECCChHHHhc--cCHHHHHHHHHHhhC---CCEEEEeCCCccCCcccH-
Confidence 44478888888999988766643 11557777776543222 345555555555554 588899999764311100
Q ss_pred cccccHHHHHHHHHHhh---CCCCCCccEEEecCC--CHHHHHHHHHcCCCceeEeccccC--------------CCC-C
Q psy15666 183 QQISNRHTLWNALTELY---NPNNGPLKSIGVSNY--TAKHLVNLIQNSKVVPAVNQVEFH--------------PHF-L 242 (339)
Q Consensus 183 ~~~~~~~~~~~~l~~l~---~~~~G~ir~iGvS~~--~~~~l~~~~~~~~~~~~~~q~~~~--------------~~~-~ 242 (339)
-.......+++.|.... +.+.+.|--||-.++ +...+.++++..++++...-..-. +.. .
T Consensus 149 G~~~a~~ai~~~l~~~~~~~~~~~~~VNiiG~~~~~~d~~el~~lL~~~Gi~v~~~~~~~~t~eei~~~~~A~lniv~~~ 228 (421)
T cd01976 149 GHHIANDAIRDHILGKRNEFEPTPYDVNIIGDYNIGGDAWASRILLEEMGLRVVAQWSGDGTLNEMENAHKAKLNLIHCY 228 (421)
T ss_pred HHHHHHHHHHHHHhccCCccCCCCCeEEEEecCCCCccHHHHHHHHHHcCCeEEEEeCCCCCHHHHHhcccCCEEEEECc
Confidence 00001223333333221 111377888985554 346788999988775542111110 100 0
Q ss_pred Cc-HHHHHHH-HhCCceEEEecchhH-----HHHHHHHHcCCC
Q psy15666 243 QP-QELIDVC-NQNKIALQAYASLGS-----TSTQIAKVHSVS 278 (339)
Q Consensus 243 ~~-~~l~~~~-~~~gi~v~~~~~l~~-----~l~~la~~~~~s 278 (339)
.. ..+-++. ++.|++++...|+|- .++++++.+|.+
T Consensus 229 ~~~~~~a~~Le~~fGiP~~~~~p~Gi~~t~~~l~~ia~~~g~~ 271 (421)
T cd01976 229 RSMNYIARMMEEKYGIPWMEYNFFGPTKIAESLRKIAAYFDDE 271 (421)
T ss_pred HHHHHHHHHHHHHhCCcEEecccCCHHHHHHHHHHHHHHhCch
Confidence 00 1223333 468999988877765 778888888865
No 45
>cd01974 Nitrogenase_MoFe_beta Nitrogenase_MoFe_beta: Nitrogenase MoFe protein, beta subunit. The nitrogenase enzyme catalyzes the ATP-dependent reduction of dinitrogen to ammonia. The Molybdenum (Mo-) nitrogenase is the most widespread and best characterized of these systems. Mo-nitrogenase consists of the MoFe protein (component 1) and the Fe protein (component 2). MoFe is an alpha2beta2 tetramer. This group contains the beta subunit of the MoFe protein. Each alphabeta pair of MoFe contains one P-cluster (at the alphabeta interface) and, one molecule of iron molybdenum cofactor (FeMoco) contained within the alpha subunit. The Fe protein contains a single [4Fe-4S] cluster. Electrons are transferred from the [4Fe-4S] cluster of the Fe protein to the P-cluster of the MoFe and in turn to FeMoCo, the site of substrate reduction.
Probab=74.58 E-value=42 Score=32.58 Aligned_cols=119 Identities=14% Similarity=0.202 Sum_probs=67.6
Q ss_pred ccccccCHHHHHHHHHhhcccCCCCCCceEEEeccCCCCCCCHHHHHHHHHHHHHhcCC-CcccEEEeecCCCCCCCCCC
Q psy15666 103 TAQEYGNEASIGRALKVLLPKFNLKREDIFITSKLSPQYNGNADQVKSLVAQTLKDLGT-TYLDLFLIHWPGTFGVDSSS 181 (339)
Q Consensus 103 ta~~y~~E~~lG~al~~~~~~~~~~R~~~~i~tK~~~~~~~~~~~~~~~~~~sL~~L~~-d~iDl~~lH~~~~~~~~~~~ 181 (339)
..-.||.|+.+-++|++...+.. .+=++|.|-+.+.-.+ +++...+++.-++... ..+.++.++.|++.+.
T Consensus 63 ~d~V~Gg~~~L~~ai~~~~~~~~--p~~I~v~ttC~~~iiG--dDi~~v~~~~~~~~~~~~~~~vi~v~tpgf~gs---- 134 (435)
T cd01974 63 DAAVFGGQNNLIDGLKNAYAVYK--PDMIAVSTTCMAEVIG--DDLNAFIKNAKNKGSIPADFPVPFANTPSFVGS---- 134 (435)
T ss_pred CceEECcHHHHHHHHHHHHHhcC--CCEEEEeCCchHhhhh--ccHHHHHHHHHHhccCCCCCeEEEecCCCCccC----
Confidence 44578888899999988755432 3446677666443222 3455555444334322 1478999998866431
Q ss_pred CcccccHHHHHHHHHH-hhC-----CCCCCccEEEecC--CC-HHHHHHHHHcCCCcee
Q psy15666 182 PQQISNRHTLWNALTE-LYN-----PNNGPLKSIGVSN--YT-AKHLVNLIQNSKVVPA 231 (339)
Q Consensus 182 ~~~~~~~~~~~~~l~~-l~~-----~~~G~ir~iGvS~--~~-~~~l~~~~~~~~~~~~ 231 (339)
.......++++|-+ +.. .+++.|--||-.+ .+ .+.+.++++..++++.
T Consensus 135 --~~~G~~~a~~al~~~l~~~~~~~~~~~~VNli~~~~~~~d~~~el~~lL~~~Gl~~~ 191 (435)
T cd01974 135 --HITGYDNMVKGILTHLTEGSGGAGKNGKLNIIPGFDTYAGNMREIKRLLELMGVDYT 191 (435)
T ss_pred --HHHHHHHHHHHHHHHHhcccCCCCCCCeEEEECCCCCCcchHHHHHHHHHHcCCCEE
Confidence 11124444444432 221 2236677776222 23 5788999998887664
No 46
>TIGR00381 cdhD CO dehydrogenase/acetyl-CoA synthase, delta subunit. This is the small subunit of a heterodimer which catalyzes the reaction CO + H2O + Acceptor = CO2 + Reduced acceptor and is involved in the synthesis of acetyl-CoA from CO2 and H2.
Probab=74.43 E-value=81 Score=30.00 Aligned_cols=110 Identities=10% Similarity=0.046 Sum_probs=64.8
Q ss_pred cccEEEeecCCCCCCCCCCCcccccHHHHHHHHHHhhCCCCCCccEEEec---CCCHHHHHHHHHcCCC-ceeEeccccC
Q psy15666 163 YLDLFLIHWPGTFGVDSSSPQQISNRHTLWNALTELYNPNNGPLKSIGVS---NYTAKHLVNLIQNSKV-VPAVNQVEFH 238 (339)
Q Consensus 163 ~iDl~~lH~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~G~ir~iGvS---~~~~~~l~~~~~~~~~-~~~~~q~~~~ 238 (339)
.+|++.||..+.. .+..+.+ .++..+..++..+. .+.=--|+=| ..+++.+++.++.+.- +|.++-....
T Consensus 153 ~aD~Ialr~~S~D---P~~~d~~--~~e~a~~vk~V~~a-v~vPLIL~gsg~~~kD~eVLeaaLe~~~G~kpLL~SAt~e 226 (389)
T TIGR00381 153 GADMVTIHLISTD---PKLDDKS--PSEAAKVLEDVLQA-VDVPIVIGGSGNPEKDPLVLEKAAEVAEGERCLLASANLD 226 (389)
T ss_pred CCCEEEEEecCCC---ccccccC--HHHHHHHHHHHHHh-CCCCEEEeCCCCCcCCHHHHHHHHHHhCCCCcEEEecCch
Confidence 4688899976321 1111122 44455555554322 0222233333 5688999999988743 6666544443
Q ss_pred CCCCCcHHHHHHHHhCCceEEEecchhH----HHHHHHHHcCCCHHH
Q psy15666 239 PHFLQPQELIDVCNQNKIALQAYASLGS----TSTQIAKVHSVSPAQ 281 (339)
Q Consensus 239 ~~~~~~~~l~~~~~~~gi~v~~~~~l~~----~l~~la~~~~~s~~~ 281 (339)
. +-..+.+.|+++|..+++++|..- .+.....++|..+.+
T Consensus 227 ~---Ny~~ia~lAk~yg~~Vvv~s~~Din~ak~Ln~kL~~~Gv~~eD 270 (389)
T TIGR00381 227 L---DYEKIANAAKKYGHVVLSWTIMDINMQKTLNRYLLKRGLMPRD 270 (389)
T ss_pred h---hHHHHHHHHHHhCCeEEEEcCCcHHHHHHHHHHHHHcCCCHHH
Confidence 1 126899999999999999997754 444444566665444
No 47
>cd01965 Nitrogenase_MoFe_beta_like Nitrogenase_MoFe_beta_like: Nitrogenase MoFe protein, beta subunit_like. The nitrogenase enzyme catalyzes the ATP-dependent reduction of dinitrogen (N2) to ammonia. This group contains the beta subunits of component 1 of the three known genetically distinct types of nitrogenase systems: a molybdenum-dependent nitrogenase (Mo-nitrogenase), a vanadium-dependent nitrogenase (V-nitrogenase), and an iron-only nitrogenase (Fe-nitrogenase). These nitrogenase systems consist of component 1 (MoFe protein, VFe protein or, FeFe protein respectively) and, component 2 (Fe protein). The most widespread and best characterized of these systems is the Mo-nitrogenase. MoFe is an alpha2beta2 tetramer, the alternative nitrogenases are alpha2beta2delta2 hexamers having alpha and beta subunits similar to the alpha and beta subunits of MoFe. For MoFe, each alphabeta pair contains one P-cluster (at the alphabeta interface) and, one molecule of iron molybdenum cofactor (Fe
Probab=71.99 E-value=98 Score=29.89 Aligned_cols=120 Identities=17% Similarity=0.230 Sum_probs=68.6
Q ss_pred ccccccCHHHHHHHHHhhcccCCCCCCceEEEeccCCCCCCCHHHHHHHHHHHHHhcCC-CcccEEEeecCCCCCCCCCC
Q psy15666 103 TAQEYGNEASIGRALKVLLPKFNLKREDIFITSKLSPQYNGNADQVKSLVAQTLKDLGT-TYLDLFLIHWPGTFGVDSSS 181 (339)
Q Consensus 103 ta~~y~~E~~lG~al~~~~~~~~~~R~~~~i~tK~~~~~~~~~~~~~~~~~~sL~~L~~-d~iDl~~lH~~~~~~~~~~~ 181 (339)
....||.|+.+-++|++...... .+-++|.|-+.+.-.+ +++..-+++.-++... ..+.++.+|.|++.+.
T Consensus 59 ~d~V~Gg~~~L~~~i~~~~~~~~--p~~I~v~~tC~~~liG--dDi~~v~~~~~~~~~~~~~~~vi~v~tpgf~g~---- 130 (428)
T cd01965 59 DAAVFGGEDNLIEALKNLLSRYK--PDVIGVLTTCLTETIG--DDVAGFIKEFRAEGPEPADFPVVYASTPSFKGS---- 130 (428)
T ss_pred CCeeECcHHHHHHHHHHHHHhcC--CCEEEEECCcchhhcC--CCHHHHHHHHHhhccCCCCCeEEEeeCCCCCCc----
Confidence 33467888888999988765432 2346677666544222 2355444444333211 2366888888865421
Q ss_pred CcccccHHHHHHHHHH-hhC----CCCCCccEEEecCC---CHHHHHHHHHcCCCceeE
Q psy15666 182 PQQISNRHTLWNALTE-LYN----PNNGPLKSIGVSNY---TAKHLVNLIQNSKVVPAV 232 (339)
Q Consensus 182 ~~~~~~~~~~~~~l~~-l~~----~~~G~ir~iGvS~~---~~~~l~~~~~~~~~~~~~ 232 (339)
.......++++|-+ +.. .++++|--||-++. +.+.+.++++..++++..
T Consensus 131 --~~~G~~~a~~al~~~~~~~~~~~~~~~VNlig~~~~~~~d~~el~~lL~~~Gl~v~~ 187 (428)
T cd01965 131 --HETGYDNAVKAIIEQLAKPSEVKKNGKVNLLPGFPLTPGDVREIKRILEAFGLEPII 187 (428)
T ss_pred --HHHHHHHHHHHHHHHHhcccCCCCCCeEEEECCCCCCccCHHHHHHHHHHcCCCEEE
Confidence 11123444444432 211 22378888986664 468899999988876544
No 48
>COG1140 NarY Nitrate reductase beta subunit [Energy production and conversion]
Probab=71.19 E-value=2.6 Score=39.33 Aligned_cols=53 Identities=13% Similarity=0.213 Sum_probs=36.1
Q ss_pred CCccEEEecCCCHHHHHHHHHcCCCceeEeccccCC-CCCCcHHHHHHHHhCCce
Q psy15666 204 GPLKSIGVSNYTAKHLVNLIQNSKVVPAVNQVEFHP-HFLQPQELIDVCNQNKIA 257 (339)
Q Consensus 204 G~ir~iGvS~~~~~~l~~~~~~~~~~~~~~q~~~~~-~~~~~~~l~~~~~~~gi~ 257 (339)
|+|||+||--++.+.+.++.....-+ ++.+....+ +++.+..+++.+++.||+
T Consensus 264 GriRYlGVlLYDaDrv~eaAs~~~e~-dly~~Q~~ifLDP~DP~Vi~~A~k~Gip 317 (513)
T COG1140 264 GRIRYLGVLLYDADRVEEAASTENEK-DLYERQLDVFLDPHDPAVIEQARKDGIP 317 (513)
T ss_pred cceeeeeeeeecHHHHHHhhcCccHH-HHHHHHHhhhcCCCCHHHHHHHHHcCCc
Confidence 99999999999999999887655322 222222222 233346788888888876
No 49
>TIGR02931 anfK_nitrog Fe-only nitrogenase, beta subunit. Nitrogenase is the enzyme of biological nitrogen fixation. The most wide-spread and most efficient nitrogenase contains a molybdenum cofactor. This protein family, AnfK, represents the beta subunit of the iron-only alternative nitrogenase. It is homologous to NifK and VnfK, of the molybdenum-containing and the vanadium (V)-containing types, respectively.
Probab=66.38 E-value=1.4e+02 Score=29.35 Aligned_cols=120 Identities=19% Similarity=0.263 Sum_probs=70.1
Q ss_pred cccccccCHHHHHHHHHhhcccCCCCCCc-eEEEeccCCCCCCCHHHHHHHHHHHHHhcC---C--CcccEEEeecCCCC
Q psy15666 102 DTAQEYGNEASIGRALKVLLPKFNLKRED-IFITSKLSPQYNGNADQVKSLVAQTLKDLG---T--TYLDLFLIHWPGTF 175 (339)
Q Consensus 102 Dta~~y~~E~~lG~al~~~~~~~~~~R~~-~~i~tK~~~~~~~~~~~~~~~~~~sL~~L~---~--d~iDl~~lH~~~~~ 175 (339)
+..-.||.|+.+-++|++....+ ++.+ ++|.|-+.+.-.+ +++...+++.-++++ . -.+.++.+|.|++.
T Consensus 69 E~d~VfGg~~~L~~ai~~~~~~~--~~p~~i~v~ttc~~eiiG--DDi~~v~~~~~~~~~~~~~p~~~~~ii~v~tpgF~ 144 (461)
T TIGR02931 69 EDGAVFGALDRVEEAVDVLLTRY--PDVKVVPIITTCSTEIIG--DDVDGLISKLNEELLKEKFPDREVHLIPIHTPSFV 144 (461)
T ss_pred CCceEECcHHHHHHHHHHHHHhc--CCCCEEEEECCchHHhhh--cCHHHHHHHHHhhhcccccCCCCCeEEEeeCCCCC
Confidence 34457888888899998775553 2334 5666665443222 346666666555552 1 13678999999765
Q ss_pred CCCCCCCcccccHHHHHHHHH-HhhC--CCCCCccEEEecC--CCHHHHHHHHHcCCCcee
Q psy15666 176 GVDSSSPQQISNRHTLWNALT-ELYN--PNNGPLKSIGVSN--YTAKHLVNLIQNSKVVPA 231 (339)
Q Consensus 176 ~~~~~~~~~~~~~~~~~~~l~-~l~~--~~~G~ir~iGvS~--~~~~~l~~~~~~~~~~~~ 231 (339)
+. .......+++++- .+.. +++++|--||-.+ -+.+.+.++++..++.+.
T Consensus 145 gs------~~~Gy~~a~~ali~~~~~~~~~~~~VNlig~~~~~~D~~elk~lL~~~Gl~v~ 199 (461)
T TIGR02931 145 GS------MITGYDVAVHDFVKHFAKKDKPNDKINLITGWVNPGDVKELKHLLEEMDIEAN 199 (461)
T ss_pred Cc------HHHHHHHHHHHHHHHHccCCCCCCcEEEECCCCChhhHHHHHHHHHHcCCceE
Confidence 31 1112334443333 2222 1237788888543 355788889998877654
No 50
>KOG1576|consensus
Probab=66.30 E-value=4.9 Score=36.07 Aligned_cols=63 Identities=8% Similarity=0.164 Sum_probs=46.6
Q ss_pred hHHHHHHhCCCeEEEeccCCCCCCCCCCC----------hHHHH-------HHHHHcCCChhHHHHHHHHhhcc--hhhh
Q psy15666 12 ELIDVCNQNKIALQAYASLGSTSSNPLIA----------DSTLA-------QIAKVHSVSPAQVLLRWALQENF--CKFI 72 (339)
Q Consensus 12 ~~~~~~~~~~i~~~~yspL~~g~~~~~~~----------~~~l~-------~ia~~~~~s~aqv~l~w~l~~g~--~~i~ 72 (339)
..+++.++.|++|+.=|+|+-| +++ .++++ ++|++.|+..+.+|+.|.++.+. ..+.
T Consensus 214 ~~~~~~~sk~vgVi~Asalsmg----LLt~~gp~~wHPaS~Elk~~a~~aa~~Cq~rnv~l~kLA~~Yam~~~~~~~~lv 289 (342)
T KOG1576|consen 214 RYLKRLKSKGVGVINASALSMG----LLTNQGPPPWHPASDELKEAAKAAAEYCQSRNVELGKLAMYYAMSLPGVSTVLV 289 (342)
T ss_pred HHHHHHHhcCceEEehhhHHHH----HhhcCCCCCCCCCCHHHHHHHHHHHHHHHHcCccHHHHHHHHHHccCCcceEEe
Confidence 5678889999999999999998 333 23444 45567899999999999999743 3455
Q ss_pred hccccc
Q psy15666 73 KLYHKV 78 (339)
Q Consensus 73 ~s~~~~ 78 (339)
|..+.+
T Consensus 290 Gm~s~~ 295 (342)
T KOG1576|consen 290 GMSSRQ 295 (342)
T ss_pred cCchHH
Confidence 554433
No 51
>COG1751 Uncharacterized conserved protein [Function unknown]
Probab=66.09 E-value=73 Score=26.11 Aligned_cols=102 Identities=16% Similarity=0.145 Sum_probs=65.1
Q ss_pred HHHHHHHHHHhhCCCCCCccEEEecCCCHHHHHHHHHcCCCceeEeccccCCCCCC------cHHHHHHHHhCCceEEEe
Q psy15666 188 RHTLWNALTELYNPNNGPLKSIGVSNYTAKHLVNLIQNSKVVPAVNQVEFHPHFLQ------PQELIDVCNQNKIALQAY 261 (339)
Q Consensus 188 ~~~~~~~l~~l~~~~~G~ir~iGvS~~~~~~l~~~~~~~~~~~~~~q~~~~~~~~~------~~~l~~~~~~~gi~v~~~ 261 (339)
.+++++..-+=-++ +-|++|=|.+.+-....++++...-...++-+.++..+.. +.++-+..+++|..+..-
T Consensus 12 T~~tle~a~erA~e--lgik~~vVAS~tG~tA~k~lemveg~lkvVvVthh~Gf~e~g~~e~~~E~~~~L~erGa~v~~~ 89 (186)
T COG1751 12 TDETLEIAVERAKE--LGIKHIVVASSTGYTALKALEMVEGDLKVVVVTHHAGFEEKGTQEMDEEVRKELKERGAKVLTQ 89 (186)
T ss_pred hHHHHHHHHHHHHh--cCcceEEEEecccHHHHHHHHhcccCceEEEEEeecccccCCceecCHHHHHHHHHcCceeeee
Confidence 45666543333344 6689998888777777777766533333444455544433 378999999999988765
Q ss_pred cc-hhHHHHHHHHHc-CCCHHHH---HHHHHhhCCc
Q psy15666 262 AS-LGSTSTQIAKVH-SVSPAQV---LLRWALQENF 292 (339)
Q Consensus 262 ~~-l~~~l~~la~~~-~~s~~~~---al~~~l~~~~ 292 (339)
|- |.+.=+.|..++ |.+|.++ .|| ...+|+
T Consensus 90 sHalSg~eRsis~kfGG~~p~eiiAetLR-~fg~G~ 124 (186)
T COG1751 90 SHALSGVERSISRKFGGYSPLEIIAETLR-MFGQGV 124 (186)
T ss_pred hhhhhcchhhhhhhcCCcchHHHHHHHHH-HhcCCc
Confidence 43 333556677787 5788776 466 556664
No 52
>TIGR01278 DPOR_BchB light-independent protochlorophyllide reductase, B subunit. This enzyme describes the B subunit of the dark form protochlorophyllide reductase, a nitrogenase-like enzyme. This subunit shows homology to the nitrogenase molybdenum-iron protein. It catalyzes a step in bacteriochlorophyll biosynthesis.
Probab=65.60 E-value=1.2e+02 Score=30.10 Aligned_cols=163 Identities=9% Similarity=0.072 Sum_probs=87.8
Q ss_pred cccCHHHHHHHHHhhcccCCCCCCceEEEeccCCCCCCCHHHHHHHHHHHHHhcCCCcccEEEeecCCCCCCCCCCCccc
Q psy15666 106 EYGNEASIGRALKVLLPKFNLKREDIFITSKLSPQYNGNADQVKSLVAQTLKDLGTTYLDLFLIHWPGTFGVDSSSPQQI 185 (339)
Q Consensus 106 ~y~~E~~lG~al~~~~~~~~~~R~~~~i~tK~~~~~~~~~~~~~~~~~~sL~~L~~d~iDl~~lH~~~~~~~~~~~~~~~ 185 (339)
.+|+++.+-++|.+...... .+-++|.|-+.+ +-+-..++...++++.+.++++.++.|++.+... ....
T Consensus 66 v~G~~~~L~~aI~~~~~~~~--P~~I~V~sTC~s------elIGdDi~~~~~~~~~~~~pvi~v~t~gf~g~~~--~g~~ 135 (511)
T TIGR01278 66 ARGSQTRLVDTVRRVDDRFK--PDLIVVTPSCTS------SLLQEDLGNLAAAAGLDKSKVIVADVNAYRRKEN--QAAD 135 (511)
T ss_pred ecchHHHHHHHHHHHHHhcC--CCEEEEeCCChH------HHhccCHHHHHHHhccCCCcEEEecCCCcccchh--HHHH
Confidence 47888888888887654421 233555554422 2233334444444554468899999996653211 0000
Q ss_pred ccHHHHHHHHHHh-hC----CCCCCccEEEecCC------CHHHHHHHHHcCCCceeEeccccC---------------C
Q psy15666 186 SNRHTLWNALTEL-YN----PNNGPLKSIGVSNY------TAKHLVNLIQNSKVVPAVNQVEFH---------------P 239 (339)
Q Consensus 186 ~~~~~~~~~l~~l-~~----~~~G~ir~iGvS~~------~~~~l~~~~~~~~~~~~~~q~~~~---------------~ 239 (339)
.....+++.+..- .+ .+++.|--||.++. +...+.++++..++.+.++ ++.+ +
T Consensus 136 ~al~~lv~~~~~~~~~~~~~~~~~~VNIiG~~~l~~~~~~D~~elkrlL~~lGi~vn~v-~p~g~s~~dl~~l~~A~~NI 214 (511)
T TIGR01278 136 RTLTQLVRRFAKEQPKPGRTTEKPSVNLLGPASLGFHHRHDLIELRRLLKTLGIEVNVV-APWGASIADLARLPAAWLNI 214 (511)
T ss_pred HHHHHHHHHHHhccccccccCCCCcEEEEeCCCCCCCCHHHHHHHHHHHHHCCCeEEEE-eCCCCCHHHHHhcccCcEEE
Confidence 1122233322211 10 12378999998863 4577888898887755433 1221 1
Q ss_pred CCCC--cHHHHHHH-HhCCceEEEecchhH-----HHHHHHHHc---CCCH
Q psy15666 240 HFLQ--PQELIDVC-NQNKIALQAYASLGS-----TSTQIAKVH---SVSP 279 (339)
Q Consensus 240 ~~~~--~~~l~~~~-~~~gi~v~~~~~l~~-----~l~~la~~~---~~s~ 279 (339)
.... ...+-++. ++.|++++...|+|- -++++++-. |.++
T Consensus 215 v~~~~~g~~~A~~Le~~fGiP~i~~~PiG~~~T~~fL~~l~~~~~~~g~~~ 265 (511)
T TIGR01278 215 CPYREIGLMAAEYLKEKFGQPYITTTPIGVNATRRFIREIAALLNQAGADP 265 (511)
T ss_pred EechHHHHHHHHHHHHHhCCCcccccccCHHHHHHHHHHHHHHHhhcCCCC
Confidence 0000 01223333 355999887788875 677777776 7653
No 53
>PRK06015 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=64.26 E-value=65 Score=27.75 Aligned_cols=60 Identities=17% Similarity=0.204 Sum_probs=37.9
Q ss_pred HHHHHHHhhCCCCCCccEEEecC-CCHHHHHHHHHcCCCceeEeccccCCCCCCcHHHHHHHHhCCceEEE
Q psy15666 191 LWNALTELYNPNNGPLKSIGVSN-YTAKHLVNLIQNSKVVPAVNQVEFHPHFLQPQELIDVCNQNKIALQA 260 (339)
Q Consensus 191 ~~~~l~~l~~~~~G~ir~iGvS~-~~~~~l~~~~~~~~~~~~~~q~~~~~~~~~~~~l~~~~~~~gi~v~~ 260 (339)
..+.+++++++ ..=-.||.-+ .+.++++++++.+. .+ -.+|.. ..+++++|+++||.++.
T Consensus 42 a~~~I~~l~~~--~~~~~vGAGTVl~~e~a~~ai~aGA-~F-----ivSP~~--~~~vi~~a~~~~i~~iP 102 (201)
T PRK06015 42 ALDAIRAVAAE--VEEAIVGAGTILNAKQFEDAAKAGS-RF-----IVSPGT--TQELLAAANDSDVPLLP 102 (201)
T ss_pred HHHHHHHHHHH--CCCCEEeeEeCcCHHHHHHHHHcCC-CE-----EECCCC--CHHHHHHHHHcCCCEeC
Confidence 34444555443 2224588877 66788888887652 22 223332 26899999999999885
No 54
>PF02401 LYTB: LytB protein; InterPro: IPR003451 Terpenes are among the largest groups of natural products and include compounds such as vitamins, cholesterol and carotenoids. The biosynthesis of all terpenoids begins with one or both of the two C5 precursors of the pathway: isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP). In animals, fungi, and certain bacteria, the synthesis of IPP and DMAPP occurs via the well-known mevalonate pathway, however, a second, nonmevalonate terpenoid pathway has been identified in many eubacteria, algae and the chloroplasts of higher plants []. LytB(IspH) catalyses the conversion of 1-hydroy-2-methyl-2-(E)-butenyl 4-diphosphate into IPP and DMAPP in this second pathway The enzyme appears to be responsible for a branch-step in the nonmevalonate pathway, in that IPP and DMAPP are produced in parallel from a single precursor although the exact mechanism of this is not currently fully understood []. Escherichia coli LytB protein had been found to regulate the activity of RelA (guanosine 3',5'-bispyrophosphate synthetase I), which in turn controls the level of a regulatory metabolite. It is involved in penicillin tolerance and the stringent response [].; GO: 0019288 isopentenyl diphosphate biosynthetic process, mevalonate-independent pathway, 0055114 oxidation-reduction process; PDB: 3DNF_B 3SZL_B 3KE8_B 3KEF_B 3SZU_A 3KEL_A 3F7T_B 3KE9_B 3KEM_B 3T0G_A ....
Probab=63.71 E-value=49 Score=30.13 Aligned_cols=105 Identities=12% Similarity=0.216 Sum_probs=62.9
Q ss_pred CCccEEEecCCCHHHHHHHHHcCCC-ceeEeccccCCCCCC----cHHHHHHHHhCCceEEEecchhH---HHHHHHHHc
Q psy15666 204 GPLKSIGVSNYTAKHLVNLIQNSKV-VPAVNQVEFHPHFLQ----PQELIDVCNQNKIALQAYASLGS---TSTQIAKVH 275 (339)
Q Consensus 204 G~ir~iGvS~~~~~~l~~~~~~~~~-~~~~~q~~~~~~~~~----~~~l~~~~~~~gi~v~~~~~l~~---~l~~la~~~ 275 (339)
.++-.+-=++++.+...++.+...- -|......+|-.+.. ...+.+++++-++-++.-++-.+ .|.++|+++
T Consensus 155 ~kv~vvsQTT~~~~~~~~i~~~l~~~~~~~~~~~~nTIC~aT~~RQ~a~~~La~~vD~miVIGg~~SsNT~kL~eia~~~ 234 (281)
T PF02401_consen 155 KKVAVVSQTTQSVEKFEEIVEALKKRFPELEGPVFNTICYATQNRQEAARELAKEVDAMIVIGGKNSSNTRKLAEIAKEH 234 (281)
T ss_dssp TCEEEEE-TTS-HHHHHHHHHHHHHHSTCEE-SCC-S--CHHHHHHHHHHHHHCCSSEEEEES-TT-HHHHHHHHHHHHC
T ss_pred CeEEEEEeecccHHHHHHHHHHHHHhCccccCCCCCCCCHhHHHHHHHHHHHHhhCCEEEEecCCCCccHHHHHHHHHHh
Confidence 5777777788888776665554311 112221223333332 15788888888877766554444 899999998
Q ss_pred CC------CHHHHHHHHHhhCCcE-EecCCCCHHHHHHhh
Q psy15666 276 SV------SPAQVLLRWALQENFL-IIPKSVTPERIVQNI 308 (339)
Q Consensus 276 ~~------s~~~~al~~~l~~~~~-~i~g~~~~~~l~enl 308 (339)
+. ++.++-..|+.....+ +..|+|+|+.+-+.+
T Consensus 235 ~~~t~~Ie~~~el~~~~l~~~~~VGItaGASTP~~ii~eV 274 (281)
T PF02401_consen 235 GKPTYHIETADELDPEWLKGVKKVGITAGASTPDWIIEEV 274 (281)
T ss_dssp TTCEEEESSGGG--HHHHTT-SEEEEEE-TTS-HHHHHHH
T ss_pred CCCEEEeCCccccCHhHhCCCCEEEEEccCCCCHHHHHHH
Confidence 74 7889999999888766 777999999876654
No 55
>COG0761 lytB 4-Hydroxy-3-methylbut-2-enyl diphosphate reductase IspH [Lipid metabolism]
Probab=63.61 E-value=30 Score=31.37 Aligned_cols=65 Identities=15% Similarity=0.265 Sum_probs=52.6
Q ss_pred HHHHHHHHhCCceEEEecchhH---HHHHHHHHcCC------CHHHHHHHHHhhCCcE-EecCCCCHHHHHHhhc
Q psy15666 245 QELIDVCNQNKIALQAYASLGS---TSTQIAKVHSV------SPAQVLLRWALQENFL-IIPKSVTPERIVQNIA 309 (339)
Q Consensus 245 ~~l~~~~~~~gi~v~~~~~l~~---~l~~la~~~~~------s~~~~al~~~l~~~~~-~i~g~~~~~~l~enl~ 309 (339)
+.+.+.+.+-++-++.-++-.+ +|.++|++.|. ++.++=..|+.....+ +-.|+|+|+-|-+++-
T Consensus 204 ~Avk~la~~~Dl~iVVG~~nSSNs~rL~eiA~~~g~~aylId~~~ei~~~w~~~~~~VGvTAGAStPd~lV~~Vi 278 (294)
T COG0761 204 DAVKELAPEVDLVIVVGSKNSSNSNRLAEIAKRHGKPAYLIDDAEEIDPEWLKGVKTVGVTAGASTPDWLVQEVI 278 (294)
T ss_pred HHHHHHhhcCCEEEEECCCCCccHHHHHHHHHHhCCCeEEeCChHhCCHHHhcCccEEEEecCCCCCHHHHHHHH
Confidence 6788888888888887666655 99999999986 6788888899887766 6679999998877763
No 56
>TIGR01282 nifD nitrogenase molybdenum-iron protein alpha chain. Nitrogenase consists of alpha (NifD) and beta (NifK) subunits of the molybdenum-iron protein and an ATP-binding iron-sulfur protein (NifH). This model describes a large clade of NifD proteins, but excludes a lineage that contains putative NifD and NifD homologs from species with vanadium-dependent nitrogenases.
Probab=62.92 E-value=1.6e+02 Score=28.93 Aligned_cols=164 Identities=16% Similarity=0.187 Sum_probs=91.5
Q ss_pred cccccCHHHHHHHHHhhcccCCCCCCceEEEeccCCCCCCCHHHHHHHHHHHHHhcCCCcccEEEeecCCCCCCCCCCCc
Q psy15666 104 AQEYGNEASIGRALKVLLPKFNLKREDIFITSKLSPQYNGNADQVKSLVAQTLKDLGTTYLDLFLIHWPGTFGVDSSSPQ 183 (339)
Q Consensus 104 a~~y~~E~~lG~al~~~~~~~~~~R~~~~i~tK~~~~~~~~~~~~~~~~~~sL~~L~~d~iDl~~lH~~~~~~~~~~~~~ 183 (339)
.-.||.|+.+-++|++....+. |.+-++|.|-+...-.+ +++..-+++.-++++ +.++.+|.|++.+...
T Consensus 110 diVfGGe~kL~~aI~e~~~~~~-P~~~I~V~tTC~~~lIG--DDi~av~~~~~~~~~---~pVi~v~t~gf~G~s~---- 179 (466)
T TIGR01282 110 DIVFGGDKKLKKAIDEIEELFP-LNKGISIQSECPVGLIG--DDIEAVAKKASKELG---KPVVPVRCEGFRGVSQ---- 179 (466)
T ss_pred ceecCcHHHHHHHHHHHHHhCC-cccEEEEeCCChHHHhc--cCHHHHHHHHhhhcC---CcEEEEeCCCcCCchh----
Confidence 3467888888888888765543 11457777776543222 345555555555554 5889999997643111
Q ss_pred ccccHHHHHHHHHH-hh---C-----CCCCCccEEEecCC--CHHHHHHHHHcCCCceeEecccc--------------C
Q psy15666 184 QISNRHTLWNALTE-LY---N-----PNNGPLKSIGVSNY--TAKHLVNLIQNSKVVPAVNQVEF--------------H 238 (339)
Q Consensus 184 ~~~~~~~~~~~l~~-l~---~-----~~~G~ir~iGvS~~--~~~~l~~~~~~~~~~~~~~q~~~--------------~ 238 (339)
......+.+++-+ +. + .+.+.|--||-.++ +.+.+.++++..++++...-..- |
T Consensus 180 -~~G~~~a~~ai~~~l~~~~~~~~~~~~~~~VNiiG~~~~~gd~~eik~lL~~~Gi~v~~~~sg~~t~~~i~~~~~A~ln 258 (466)
T TIGR01282 180 -SLGHHIANDAVRDWVLGKGDKEKFEPTPYDVAIIGDYNIGGDAWESRILLEEIGLRVVAQWSGDGTLNEMENAPKAKLN 258 (466)
T ss_pred -hHHHHHHHHHHHHHhhccccccccCCCCCeEEEEecCCCcccHHHHHHHHHHcCCeEEEEECCCCCHHHHHhcccCCEE
Confidence 0112222322222 22 1 11278999985553 44678899998877543211110 0
Q ss_pred CCCCCc--HHHHHHHH-hCCceEEEecchhH-----HHHHHHHHcCCC
Q psy15666 239 PHFLQP--QELIDVCN-QNKIALQAYASLGS-----TSTQIAKVHSVS 278 (339)
Q Consensus 239 ~~~~~~--~~l~~~~~-~~gi~v~~~~~l~~-----~l~~la~~~~~s 278 (339)
+..... ..+-++.+ +.||+++...|+|- .++.+|+-+|..
T Consensus 259 iv~~~~~~~~~A~~Le~~fGiP~~~~~~~Gi~~T~~~Lr~ia~~~g~~ 306 (466)
T TIGR01282 259 LIHCYRSMNYISRHMEEKYGIPWMEYNFFGPTKIAESLRKIAEFFDDE 306 (466)
T ss_pred EEEChHHHHHHHHHHHHHhCCceEeCCCCCHHHHHHHHHHHHHHHCch
Confidence 111000 12334444 55999988877664 677788877753
No 57
>TIGR00216 ispH_lytB (E)-4-hydroxy-3-methyl-but-2-enyl pyrophosphate reductase (IPP and DMAPP forming). Escherichia coli LytB protein had been found to regulate the activity of RelA (guanosine 3',5'-bispyrophosphate synthetase I), which in turn controls the level of a regulatory metabolite. It is involved in penicillin tolerance and the stringent response.
Probab=62.80 E-value=60 Score=29.53 Aligned_cols=111 Identities=13% Similarity=0.192 Sum_probs=67.6
Q ss_pred HHHhhCCCCCCccEEEecCCCHHHHHHHHHcCCCce--eEeccccCCCCCC----cHHHHHHHHhCCceEEEecchhH--
Q psy15666 195 LTELYNPNNGPLKSIGVSNYTAKHLVNLIQNSKVVP--AVNQVEFHPHFLQ----PQELIDVCNQNKIALQAYASLGS-- 266 (339)
Q Consensus 195 l~~l~~~~~G~ir~iGvS~~~~~~l~~~~~~~~~~~--~~~q~~~~~~~~~----~~~l~~~~~~~gi~v~~~~~l~~-- 266 (339)
++.|... .++-.+-=++.+.+.+.++.+...-++ .-..+ +|-.+.. -..+.+++++-++-++.-+.=.+
T Consensus 147 ~~~l~~~--~~v~vvsQTT~~~~~~~~i~~~l~~~~~~~~~~~-~nTIC~AT~~RQ~a~~~la~~vD~miVVGg~nSsNT 223 (280)
T TIGR00216 147 LENFKVE--DLLGVVSQTTLSQEDTKEIVAELKARVPQKEVPV-FNTICYATQNRQDAVKELAPEVDLMIVIGGKNSSNT 223 (280)
T ss_pred HHhCCCC--CcEEEEEcCCCcHHHHHHHHHHHHHhCCCcCCCC-CCCcccccHHHHHHHHHHHhhCCEEEEECCCCCchH
Confidence 4444444 555555555666666665544331111 11111 2222222 15688888888877665444333
Q ss_pred -HHHHHHHHcCC------CHHHHHHHHHhhCCcE-EecCCCCHHHHHHhh
Q psy15666 267 -TSTQIAKVHSV------SPAQVLLRWALQENFL-IIPKSVTPERIVQNI 308 (339)
Q Consensus 267 -~l~~la~~~~~------s~~~~al~~~l~~~~~-~i~g~~~~~~l~enl 308 (339)
+|.++|+++|. ++.++-..|+.....+ +..|+|+|+.+-+.+
T Consensus 224 ~rL~ei~~~~~~~t~~Ie~~~el~~~~l~~~~~VGiTAGASTP~~li~eV 273 (280)
T TIGR00216 224 TRLYEIAEEHGPPSYLIETAEELPEEWLKGVKVVGITAGASTPDWIIEEV 273 (280)
T ss_pred HHHHHHHHHhCCCEEEECChHHCCHHHhCCCCEEEEEecCCCCHHHHHHH
Confidence 89999999874 7888889999876655 777999999776543
No 58
>PF01876 RNase_P_p30: RNase P subunit p30; InterPro: IPR002738 Members of this protein family are part of the ribonuclease P complex () that takes part in endonucleolytic cleavage of RNA, removing 5'-extra-nucleotide from tRNA precursor. This process is essential for tRNA processing.; GO: 0004540 ribonuclease activity, 0008033 tRNA processing; PDB: 1V77_A 2CZV_A.
Probab=62.49 E-value=25 Score=28.49 Aligned_cols=122 Identities=17% Similarity=0.218 Sum_probs=64.8
Q ss_pred HHHHHHHhhCCCCCCccEEEecCCCHHHHHHHHHcCCCceeEeccccC--CCCCCcHHHHHHHHhCCceE-EEecchhHH
Q psy15666 191 LWNALTELYNPNNGPLKSIGVSNYTAKHLVNLIQNSKVVPAVNQVEFH--PHFLQPQELIDVCNQNKIAL-QAYASLGST 267 (339)
Q Consensus 191 ~~~~l~~l~~~~~G~ir~iGvS~~~~~~l~~~~~~~~~~~~~~q~~~~--~~~~~~~~l~~~~~~~gi~v-~~~~~l~~~ 267 (339)
....+.... .+.--|.|...+.+.+..+.....+ +++.+++. ....-....+..|.++|+.+ +.|+|+-.
T Consensus 14 ~~~~~~~~~----~~~divav~p~~~~~~~~a~~~~~v--DiIt~d~~~~~~~~~~~~~~~~a~~~gi~~EI~~~~~l~- 86 (150)
T PF01876_consen 14 LRRSLSKFR----KKYDIVAVRPGSEKAFRAACSDPRV--DIITFDLTERLPFYIKRKQARLAIERGIFFEISYSPLLR- 86 (150)
T ss_dssp HHHHHHHTT----T--SEEEEE-S-HHHHHHHHHTT----SEEE-TTTTSSS-S--HHHHHHHHHHT-EEEEESHHHHH-
T ss_pred HHHHhhccc----CCceEEEEEcCCHHHHHHHHhcCCC--CEEEeCcccccccccCHHHHHHHHHCCEEEEEEehHhhc-
Confidence 455555554 3456788888888889999887754 67777663 22222378999999999988 77888861
Q ss_pred HHHHHHHcCCCHHHHHHHHHhhCCcEEecCCCCHHHHHHhhcC-----CCCCCHHHH
Q psy15666 268 STQIAKVHSVSPAQVLLRWALQENFLIIPKSVTPERIVQNIAL-----DFELSPEEV 319 (339)
Q Consensus 268 l~~la~~~~~s~~~~al~~~l~~~~~~i~g~~~~~~l~enl~~-----~~~L~~~~~ 319 (339)
...-....-.+-.+-.++++...+.++-.|++++-+++.-.+. -+-+++++.
T Consensus 87 ~~~~~r~~~~~~~~~l~~~~~~~~iiiSSgA~~~~elr~P~dv~~l~~~lGl~~~~a 143 (150)
T PF01876_consen 87 SDGSNRRNFISNARRLIRLTKKKNIIISSGASSPLELRSPRDVINLLALLGLSEEEA 143 (150)
T ss_dssp S-HHHHHHHHHHHHHHHHHHHH--EEEE---SSGGG---HHHHHHHHHHTT--HHHH
T ss_pred cCcHHHHHHHHHHHHHHHHhCCCCEEEEcCCCChhhCcCHHHHHHHHHHhCCCHHHH
Confidence 0111111112334567888888888888899888777665443 234555543
No 59
>cd01971 Nitrogenase_VnfN_like Nitrogenase_vnfN_like: VnfN subunit of the VnfEN complex-like. This group in addition to VnfN contains a subset of the beta subunit of the nitrogenase MoFe protein and NifN-like proteins. The nitrogenase enzyme system catalyzes the ATP-dependent reduction of dinitrogen to ammonia. NifEN participates in the synthesis of the iron-molybdenum cofactor (FeMoco) of MoFe protein of the molybdenum(Mo)-nitrogenase. NifB-co (an iron and sulfur containing precursor of the FeMoco) from NifB is transferred to NifEN where it is further processed to FeMoco. VnfEN may similarly be a scaffolding protien for the iron-vanadium cofactor (FeVco) of the vanadium-dependent (V)-nitrogenase. NifE and NifN are essential for the Mo-nitrogenase, VnfE and VnfN are not essential for the V-nitrogenase. NifE and NifN can substitute when the vnfEN genes are inactivated.
Probab=59.77 E-value=1.7e+02 Score=28.25 Aligned_cols=162 Identities=12% Similarity=0.135 Sum_probs=94.0
Q ss_pred cccccCHHHHHHHHHhhcccCCCCCCceEEEeccCCCCCCCHHHHHHHHHHHHHhcCCCcccEEEeecCCCCCCCCCCCc
Q psy15666 104 AQEYGNEASIGRALKVLLPKFNLKREDIFITSKLSPQYNGNADQVKSLVAQTLKDLGTTYLDLFLIHWPGTFGVDSSSPQ 183 (339)
Q Consensus 104 a~~y~~E~~lG~al~~~~~~~~~~R~~~~i~tK~~~~~~~~~~~~~~~~~~sL~~L~~d~iDl~~lH~~~~~~~~~~~~~ 183 (339)
.-.||.|+.+-++|++..... +-+-++|.|-+.+.-.+ +++..-+++. ++++ ++++.+|.|++.+..
T Consensus 65 d~V~Gg~~kL~~~I~~~~~~~--~p~~I~V~ttC~~~~IG--dDi~~v~~~~-~~~~---~~vi~v~t~gf~g~~----- 131 (427)
T cd01971 65 EIVFGGEDRLRELIKSTLSII--DADLFVVLTGCIAEIIG--DDVGAVVSEF-QEGG---APIVYLETGGFKGNN----- 131 (427)
T ss_pred ceEeCCHHHHHHHHHHHHHhC--CCCEEEEEcCCcHHHhh--cCHHHHHHHh-hhcC---CCEEEEECCCcCccc-----
Confidence 346888888888888765443 23446676666543222 3455555554 5544 689999999765321
Q ss_pred ccccHHHHHHHHHH-hhC----CCCCCccEEEecC-------CCHHHHHHHHHcCCCceeEeccccCCC-----------
Q psy15666 184 QISNRHTLWNALTE-LYN----PNNGPLKSIGVSN-------YTAKHLVNLIQNSKVVPAVNQVEFHPH----------- 240 (339)
Q Consensus 184 ~~~~~~~~~~~l~~-l~~----~~~G~ir~iGvS~-------~~~~~l~~~~~~~~~~~~~~q~~~~~~----------- 240 (339)
......++++|-+ +.. .+++.|.-||..+ .+.+.+.++++..++++..+-.....+
T Consensus 132 -~~G~~~a~~al~~~~~~~~~~~~~~~VNiiG~~~~~~~~~~~d~~elk~lL~~~Gl~v~~~~~~~~~~~ei~~~~~A~~ 210 (427)
T cd01971 132 -YAGHEIVLKAIIDQYVGQSEEKEPGLVNLWGPVPYQDPFWRGDLEEIKRVLEGIGLKVNILFGPESNGEELRSIPKAQF 210 (427)
T ss_pred -ccHHHHHHHHHHHHhccCCCCCCCCeEEEEeccCCccccccccHHHHHHHHHHCCCeEEEEECCCCCHHHHHhcccCcE
Confidence 1124444444432 221 2237788999643 245789999998887664442221111
Q ss_pred ---CCC--cHHHHHHH-HhCCceEEEe--cchhH-----HHHHHHHHcCCCH
Q psy15666 241 ---FLQ--PQELIDVC-NQNKIALQAY--ASLGS-----TSTQIAKVHSVSP 279 (339)
Q Consensus 241 ---~~~--~~~l~~~~-~~~gi~v~~~--~~l~~-----~l~~la~~~~~s~ 279 (339)
... ....-++. ++.|++++.. -|+|- .++.+++..|.+.
T Consensus 211 niv~~~~~g~~~a~~L~~~~giP~i~~~~~P~G~~~t~~~l~~i~~~~g~~~ 262 (427)
T cd01971 211 NLVLSPWVGLEFAQHLEEKYGQPYIHSPTLPIGAKATAEFLRQVAKFAGIEK 262 (427)
T ss_pred EEEEcHhhHHHHHHHHHHHhCCceEecCCCccCHHHHHHHHHHHHHHhCCCh
Confidence 000 01233333 4679988875 36664 7888888888764
No 60
>PRK12360 4-hydroxy-3-methylbut-2-enyl diphosphate reductase; Provisional
Probab=57.59 E-value=73 Score=29.01 Aligned_cols=104 Identities=9% Similarity=0.119 Sum_probs=63.6
Q ss_pred CCccEEEecCCCHHHHHHHHHcCCCceeEeccccCCCCCC----cHHHHHHHHhCCceEEEecchhH---HHHHHHHHcC
Q psy15666 204 GPLKSIGVSNYTAKHLVNLIQNSKVVPAVNQVEFHPHFLQ----PQELIDVCNQNKIALQAYASLGS---TSTQIAKVHS 276 (339)
Q Consensus 204 G~ir~iGvS~~~~~~l~~~~~~~~~~~~~~q~~~~~~~~~----~~~l~~~~~~~gi~v~~~~~l~~---~l~~la~~~~ 276 (339)
.++-.+-=++.+.+.+.++.+...-++.-..+ ++-.+.. ...+.+++++-++-++.-+.=.+ .|.++|.+.+
T Consensus 157 ~kv~~vsQTT~~~~~~~~iv~~l~~~~~~~~v-~~TIC~aT~~RQ~a~~~La~~vD~miVVGg~~SsNT~rL~eia~~~~ 235 (281)
T PRK12360 157 DKACVVAQTTIIPELWEDILNVIKLKSKELVF-FNTICSATKKRQESAKELSKEVDVMIVIGGKHSSNTQKLVKICEKNC 235 (281)
T ss_pred cCEEEEECCCCcHHHHHHHHHHHHHhCccccc-CCCcchhhhhHHHHHHHHHHhCCEEEEecCCCCccHHHHHHHHHHHC
Confidence 34444444556666655554433111111111 2322222 15688888888877765444333 8999999887
Q ss_pred C------CHHHHHHHHHhhCCcE-EecCCCCHHHHHHhh
Q psy15666 277 V------SPAQVLLRWALQENFL-IIPKSVTPERIVQNI 308 (339)
Q Consensus 277 ~------s~~~~al~~~l~~~~~-~i~g~~~~~~l~enl 308 (339)
. ++.++-..|+.....+ +..|+|+|+.+-+.+
T Consensus 236 ~~t~~Ie~~~el~~~~~~~~~~VGitaGASTP~~li~eV 274 (281)
T PRK12360 236 PNTFHIETADELDLEMLKDYKIIGITAGASTPDWIIEEV 274 (281)
T ss_pred CCEEEECChHHCCHHHhCCCCEEEEEccCCCCHHHHHHH
Confidence 4 6788888999877666 778999999776554
No 61
>COG2200 Rtn c-di-GMP phosphodiesterase class I (EAL domain) [Signal transduction mechanisms]
Probab=57.46 E-value=90 Score=27.79 Aligned_cols=134 Identities=14% Similarity=0.158 Sum_probs=76.7
Q ss_pred HHHHHHHHHhhcccCCCCCC--ceEEEeccCCCCCCCHHHHHHHHHHHHHhcCCCcccEEEeecCCCCCCCCCCCccccc
Q psy15666 110 EASIGRALKVLLPKFNLKRE--DIFITSKLSPQYNGNADQVKSLVAQTLKDLGTTYLDLFLIHWPGTFGVDSSSPQQISN 187 (339)
Q Consensus 110 E~~lG~al~~~~~~~~~~R~--~~~i~tK~~~~~~~~~~~~~~~~~~sL~~L~~d~iDl~~lH~~~~~~~~~~~~~~~~~ 187 (339)
...+.++++.. ...+. .+.++..+.+..... ..+...+.+.+++.+++.- -+.+--.+ ......
T Consensus 69 ~~v~~~a~~~~----~~~~~~~~~~l~iNis~~~l~~-~~~~~~l~~~l~~~~~~~~-~l~lEitE--------~~~~~~ 134 (256)
T COG2200 69 RWVLEEACRQL----RTWPRAGPLRLAVNLSPVQLRS-PGLVDLLLRLLARLGLPPH-RLVLEITE--------SALIDD 134 (256)
T ss_pred HHHHHHHHHHH----HhhhhcCCceEEEEcCHHHhCC-chHHHHHHHHHHHhCCCcc-eEEEEEeC--------chhhcC
Confidence 44566666654 11122 478888887754454 5677788888888886543 22222111 011112
Q ss_pred HHHHHHHHHHhhCCCCCCccEEEecCCCH--HHHHHHHHcCCCceeEeccccCCCC---CC------cHHHHHHHHhCCc
Q psy15666 188 RHTLWNALTELYNPNNGPLKSIGVSNYTA--KHLVNLIQNSKVVPAVNQVEFHPHF---LQ------PQELIDVCNQNKI 256 (339)
Q Consensus 188 ~~~~~~~l~~l~~~~~G~ir~iGvS~~~~--~~l~~~~~~~~~~~~~~q~~~~~~~---~~------~~~l~~~~~~~gi 256 (339)
...+...+..|++. | -.|.+.+|+. ..+..+.+ ++|+++-+.-+... .. -..++..|++.|+
T Consensus 135 ~~~~~~~l~~L~~~--G--~~ialDDFGtG~ssl~~L~~---l~~d~iKID~~fi~~i~~~~~~~~iv~~iv~la~~l~~ 207 (256)
T COG2200 135 LDTALALLRQLREL--G--VRIALDDFGTGYSSLSYLKR---LPPDILKIDRSFVRDLETDARDQAIVRAIVALAHKLGL 207 (256)
T ss_pred HHHHHHHHHHHHHC--C--CeEEEECCCCCHHHHHHHhh---CCCCeEEECHHHHhhcccCcchHHHHHHHHHHHHHCCC
Confidence 44677889999999 9 3677877775 34444443 23333333222211 11 1578888999999
Q ss_pred eEEEecch
Q psy15666 257 ALQAYASL 264 (339)
Q Consensus 257 ~v~~~~~l 264 (339)
.+++-+.=
T Consensus 208 ~vvaEGVE 215 (256)
T COG2200 208 TVVAEGVE 215 (256)
T ss_pred EEEEeecC
Confidence 88884443
No 62
>PRK01045 ispH 4-hydroxy-3-methylbut-2-enyl diphosphate reductase; Reviewed
Probab=56.84 E-value=79 Score=29.04 Aligned_cols=105 Identities=11% Similarity=0.181 Sum_probs=64.4
Q ss_pred CCccEEEecCCCHHHHHHHHHcCCCc-eeEeccccCCCCCC----cHHHHHHHHhCCceEEEecchhH---HHHHHHHHc
Q psy15666 204 GPLKSIGVSNYTAKHLVNLIQNSKVV-PAVNQVEFHPHFLQ----PQELIDVCNQNKIALQAYASLGS---TSTQIAKVH 275 (339)
Q Consensus 204 G~ir~iGvS~~~~~~l~~~~~~~~~~-~~~~q~~~~~~~~~----~~~l~~~~~~~gi~v~~~~~l~~---~l~~la~~~ 275 (339)
.++-.+-=++.+.+.+.++.+...-+ +.+.-..+|-.+.. -..+.+++++.+.-++.-++=.+ .|.++|+++
T Consensus 156 ~~v~vvsQTT~~~~~~~~i~~~l~~~~~~~~v~~~nTIC~aT~~RQ~a~~~La~~vD~miVVGg~~SsNT~kL~~i~~~~ 235 (298)
T PRK01045 156 DKLALVTQTTLSVDDTAEIIAALKERFPEIQGPPKDDICYATQNRQEAVKELAPQADLVIVVGSKNSSNSNRLREVAEEA 235 (298)
T ss_pred CcEEEEEcCCCcHHHHHHHHHHHHHhCcCcccCCCCCcchhhHHHHHHHHHHHhhCCEEEEECCCCCccHHHHHHHHHHH
Confidence 44555555566666665555433111 12111112222222 15678888888877765444333 899999988
Q ss_pred CC------CHHHHHHHHHhhCCcE-EecCCCCHHHHHHhh
Q psy15666 276 SV------SPAQVLLRWALQENFL-IIPKSVTPERIVQNI 308 (339)
Q Consensus 276 ~~------s~~~~al~~~l~~~~~-~i~g~~~~~~l~enl 308 (339)
+. ++.++-..|+.....+ +..|+|+|+.+-+.+
T Consensus 236 ~~~t~~Ie~~~el~~~~l~~~~~VGitaGASTP~~li~eV 275 (298)
T PRK01045 236 GAPAYLIDDASEIDPEWFKGVKTVGVTAGASAPEWLVQEV 275 (298)
T ss_pred CCCEEEECChHHCcHHHhcCCCEEEEEecCCCCHHHHHHH
Confidence 74 7889989999766655 778999999776554
No 63
>PF06506 PrpR_N: Propionate catabolism activator; InterPro: IPR010524 Two-component signal transduction systems enable bacteria to sense, respond, and adapt to a wide range of environments, stressors, and growth conditions []. Some bacteria can contain up to as many as 200 two-component systems that need tight regulation to prevent unwanted cross-talk []. These pathways have been adapted to response to a wide variety of stimuli, including nutrients, cellular redox state, changes in osmolarity, quorum signals, antibiotics, and more []. Two-component systems are comprised of a sensor histidine kinase (HK) and its cognate response regulator (RR) []. The HK catalyses its own auto-phosphorylation followed by the transfer of the phosphoryl group to the receiver domain on RR; phosphorylation of the RR usually activates an attached output domain, which can then effect changes in cellular physiology, often by regulating gene expression. Some HK are bifunctional, catalysing both the phosphorylation and dephosphorylation of their cognate RR. The input stimuli can regulate either the kinase or phosphatase activity of the bifunctional HK. A variant of the two-component system is the phospho-relay system. Here a hybrid HK auto-phosphorylates and then transfers the phosphoryl group to an internal receiver domain, rather than to a separate RR protein. The phosphoryl group is then shuttled to histidine phosphotransferase (HPT) and subsequently to a terminal RR, which can evoke the desired response [, ]. This entry represents a domain found at the N terminus of several sigma54- dependent transcriptional activators including PrpR, which activates catabolism of propionate. In Salmonella enterica subsp. enterica serovar Typhimurium, PrpR acts as a sensor of 2-methylcitrate (2-MC), an intermediate of the 2-methylcitric acid cycle used by this bacterium to convert propionate to pyruvate []. ; GO: 0000156 two-component response regulator activity, 0003677 DNA binding, 0005524 ATP binding, 0000160 two-component signal transduction system (phosphorelay); PDB: 2Q5C_A 2PJU_A.
Probab=55.79 E-value=40 Score=28.12 Aligned_cols=79 Identities=10% Similarity=0.134 Sum_probs=49.1
Q ss_pred HHHHHHHHHHhhCCCCCCccEEEecCCC--HHHHHHHHHcCCCceeEeccccCCCCCCcHHHHHHHHhCCceEEEecchh
Q psy15666 188 RHTLWNALTELYNPNNGPLKSIGVSNYT--AKHLVNLIQNSKVVPAVNQVEFHPHFLQPQELIDVCNQNKIALQAYASLG 265 (339)
Q Consensus 188 ~~~~~~~l~~l~~~~~G~ir~iGvS~~~--~~~l~~~~~~~~~~~~~~q~~~~~~~~~~~~l~~~~~~~gi~v~~~~~l~ 265 (339)
..+++++|.++++. .++|..+|..+.. ...+.+++. + .+.+..|+.... ....+..+++.|+.++.-+...
T Consensus 63 ~~Dil~al~~a~~~-~~~Iavv~~~~~~~~~~~~~~ll~---~--~i~~~~~~~~~e-~~~~i~~~~~~G~~viVGg~~~ 135 (176)
T PF06506_consen 63 GFDILRALAKAKKY-GPKIAVVGYPNIIPGLESIEELLG---V--DIKIYPYDSEEE-IEAAIKQAKAEGVDVIVGGGVV 135 (176)
T ss_dssp HHHHHHHHHHCCCC-TSEEEEEEESS-SCCHHHHHHHHT------EEEEEEESSHHH-HHHHHHHHHHTT--EEEESHHH
T ss_pred HhHHHHHHHHHHhc-CCcEEEEecccccHHHHHHHHHhC---C--ceEEEEECCHHH-HHHHHHHHHHcCCcEEECCHHH
Confidence 67899999999876 2377777777754 366666663 3 455555543221 2678888999999988755442
Q ss_pred HHHHHHHHHcC
Q psy15666 266 STSTQIAKVHS 276 (339)
Q Consensus 266 ~~l~~la~~~~ 276 (339)
.++|+++|
T Consensus 136 ---~~~A~~~g 143 (176)
T PF06506_consen 136 ---CRLARKLG 143 (176)
T ss_dssp ---HHHHHHTT
T ss_pred ---HHHHHHcC
Confidence 44555544
No 64
>PF14871 GHL6: Hypothetical glycosyl hydrolase 6
Probab=53.31 E-value=17 Score=29.01 Aligned_cols=28 Identities=25% Similarity=0.586 Sum_probs=23.0
Q ss_pred CCCCCCc--hhHHHHHHhCCCeEEEeccCC
Q psy15666 4 HPHFLQP--QELIDVCNQNKIALQAYASLG 31 (339)
Q Consensus 4 ~~~~~~~--~~~~~~~~~~~i~~~~yspL~ 31 (339)
||++.+. .++++.|++.||.+++|-...
T Consensus 38 hp~L~~Dllge~v~a~h~~Girv~ay~~~~ 67 (132)
T PF14871_consen 38 HPGLKRDLLGEQVEACHERGIRVPAYFDFS 67 (132)
T ss_pred CCCCCcCHHHHHHHHHHHCCCEEEEEEeee
Confidence 6755432 589999999999999999886
No 65
>PF11242 DUF2774: Protein of unknown function (DUF2774); InterPro: IPR021404 This entry is represented by Bacteriophage T4, Gp24.3; it is a family of uncharacterised viral proteins.
Probab=52.77 E-value=17 Score=24.68 Aligned_cols=24 Identities=25% Similarity=0.452 Sum_probs=21.0
Q ss_pred HHHHHHHHcCCChhHHHHHHHHhh
Q psy15666 43 TLAQIAKVHSVSPAQVLLRWALQE 66 (339)
Q Consensus 43 ~l~~ia~~~~~s~aqv~l~w~l~~ 66 (339)
...+||+++|.++..++..|+.-.
T Consensus 15 ~FveIAr~~~i~a~e~a~~w~~Ve 38 (63)
T PF11242_consen 15 SFVEIARKIGITAKEVAKAWAEVE 38 (63)
T ss_pred cHHHHHHHhCCCHHHHHHHHHHHH
Confidence 367899999999999999998644
No 66
>cd03174 DRE_TIM_metallolyase DRE-TIM metallolyase superfamily. The DRE-TIM metallolyase superfamily includes 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues that cap the core of the barrel. In addition, the catalytic site includes three invariant residues - an aspartate (D), an arginine (R), and a glutamate (E) - which is the basis for the domain name "DRE-TIM".
Probab=52.06 E-value=59 Score=28.77 Aligned_cols=100 Identities=13% Similarity=0.142 Sum_probs=61.7
Q ss_pred HHHHHHHHHHhcCCCcccEEEeecCCCCCCCCCCCcccccHHHHHHHHHHhhCCCCC-CccEEEecCCCHHHHHHHHHcC
Q psy15666 148 VKSLVAQTLKDLGTTYLDLFLIHWPGTFGVDSSSPQQISNRHTLWNALTELYNPNNG-PLKSIGVSNYTAKHLVNLIQNS 226 (339)
Q Consensus 148 ~~~~~~~sL~~L~~d~iDl~~lH~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~G-~ir~iGvS~~~~~~l~~~~~~~ 226 (339)
-...+-+.|..+|+++|.+-..-.+.. .+ ...+.++.++.+++. + .++...++......++.+.+..
T Consensus 20 ~~~~i~~~L~~~GV~~IEvg~~~~~~~------~p----~~~~~~~~i~~l~~~--~~~~~~~~l~~~~~~~i~~a~~~g 87 (265)
T cd03174 20 DKLEIAEALDEAGVDSIEVGSGASPKA------VP----QMEDDWEVLRAIRKL--VPNVKLQALVRNREKGIERALEAG 87 (265)
T ss_pred HHHHHHHHHHHcCCCEEEeccCcCccc------cc----cCCCHHHHHHHHHhc--cCCcEEEEEccCchhhHHHHHhCC
Confidence 344455568899999998866543311 01 134567788888888 7 5777777766667777777654
Q ss_pred CCceeEeccccCCCC--------CC-------cHHHHHHHHhCCceEEEec
Q psy15666 227 KVVPAVNQVEFHPHF--------LQ-------PQELIDVCNQNKIALQAYA 262 (339)
Q Consensus 227 ~~~~~~~q~~~~~~~--------~~-------~~~l~~~~~~~gi~v~~~~ 262 (339)
+ ..+++.+..-+ +. ....+.++++.|+.+...-
T Consensus 88 -~--~~i~i~~~~s~~~~~~~~~~~~~~~~~~~~~~i~~a~~~G~~v~~~~ 135 (265)
T cd03174 88 -V--DEVRIFDSASETHSRKNLNKSREEDLENAEEAIEAAKEAGLEVEGSL 135 (265)
T ss_pred -c--CEEEEEEecCHHHHHHHhCCCHHHHHHHHHHHHHHHHHCCCeEEEEE
Confidence 2 33444443321 11 1567888899998775543
No 67
>PRK13352 thiamine biosynthesis protein ThiC; Provisional
Probab=51.79 E-value=2.3e+02 Score=27.31 Aligned_cols=80 Identities=16% Similarity=0.326 Sum_probs=46.3
Q ss_pred HHHHHHHHHHHHhcCCCcccEEEeecCCCCCCCCCCCcccccHHHHHHHHHHhhCCCCCCccEEEecCCCHHHHHHHHHc
Q psy15666 146 DQVKSLVAQTLKDLGTTYLDLFLIHWPGTFGVDSSSPQQISNRHTLWNALTELYNPNNGPLKSIGVSNYTAKHLVNLIQN 225 (339)
Q Consensus 146 ~~~~~~~~~sL~~L~~d~iDl~~lH~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~G~ir~iGvS~~~~~~l~~~~~~ 225 (339)
+.+.+.+++..+ |-+|.+-+|.- -..+.++.+++. | |..||-+-.-.-+...+..
T Consensus 143 d~~~~~ie~qa~----~GVDfmTiHcG-----------------i~~~~~~~~~~~--~--R~~giVSRGGs~~~~WM~~ 197 (431)
T PRK13352 143 DDLFDVIEKQAK----DGVDFMTIHCG-----------------VTRETLERLKKS--G--RIMGIVSRGGSFLAAWMLH 197 (431)
T ss_pred HHHHHHHHHHHH----hCCCEEEEccc-----------------hhHHHHHHHHhc--C--CccCeecCCHHHHHHHHHH
Confidence 666666666554 56788999974 235667788877 7 5677776665555444432
Q ss_pred CCCceeEeccccCCCCCCcHHHHHHHHhCCceE
Q psy15666 226 SKVVPAVNQVEFHPHFLQPQELIDVCNQNKIAL 258 (339)
Q Consensus 226 ~~~~~~~~q~~~~~~~~~~~~l~~~~~~~gi~v 258 (339)
.. .=||++..-+.+++.|+++++.+
T Consensus 198 n~--------~ENPlye~fD~lLeI~~~yDVtl 222 (431)
T PRK13352 198 NN--------KENPLYEHFDYLLEILKEYDVTL 222 (431)
T ss_pred cC--------CcCchHHHHHHHHHHHHHhCeee
Confidence 21 11333333345555555555554
No 68
>PF10668 Phage_terminase: Phage terminase small subunit; InterPro: IPR018925 This entry describes the terminase small subunit from Enterococcus phage phiFL1A, related proteins in other bacteriophage, and prophage regions of bacterial genomes. Packaging of double-stranded viral DNA concatemers requires interaction of the prohead with virus DNA. This process is mediated by a phage-encoded DNA recognition and terminase protein. The terminase enzymes described so far, which are hetero-oligomers composed of a small and a large subunit, do not have a significant level of sequence homology. The small terminase subunit is thought to form a nucleoprotein structure that helps to position the terminase large subunit at the packaging initiation site [].
Probab=51.61 E-value=12 Score=25.43 Aligned_cols=22 Identities=27% Similarity=0.486 Sum_probs=17.6
Q ss_pred HHHHHHHHcCCChhHHHHHHHHh
Q psy15666 43 TLAQIAKVHSVSPAQVLLRWALQ 65 (339)
Q Consensus 43 ~l~~ia~~~~~s~aqv~l~w~l~ 65 (339)
.+++||+++|+++.+|. .|-..
T Consensus 24 ~lkdIA~~Lgvs~~tIr-~WK~~ 45 (60)
T PF10668_consen 24 KLKDIAEKLGVSESTIR-KWKSR 45 (60)
T ss_pred cHHHHHHHHCCCHHHHH-HHhhh
Confidence 58999999999999976 45443
No 69
>TIGR00190 thiC thiamine biosynthesis protein ThiC. The thiC ortholog is designated thiA in Bacillus subtilis.
Probab=50.27 E-value=2.4e+02 Score=27.08 Aligned_cols=33 Identities=12% Similarity=0.124 Sum_probs=23.8
Q ss_pred HHHHHHHHHcCCChhHHHHHHHHhhcchhhhhccc
Q psy15666 42 STLAQIAKVHSVSPAQVLLRWALQENFCKFIKLYH 76 (339)
Q Consensus 42 ~~l~~ia~~~~~s~aqv~l~w~l~~g~~~i~~s~~ 76 (339)
++++.+|++=++++-.+ +=.+..|.++||...+
T Consensus 14 ~em~~vA~~E~v~~e~i--r~~vA~G~iVIp~N~~ 46 (423)
T TIGR00190 14 PEMKFVAERENVDPEFL--RREVASGRIVIPSNIN 46 (423)
T ss_pred HHHHHHHHHcCCCHHHH--HHHhhCceEEeecCCC
Confidence 67899999989988763 3355567777776654
No 70
>TIGR01182 eda Entner-Doudoroff aldolase. 2-deydro-3-deoxyphosphogluconate aldolase (EC 4.1.2.14) is an enzyme of the Entner-Doudoroff pathway. This aldolase has another function, 4-hydroxy-2-oxoglutarate aldolase (EC 4.1.3.16) shown experimentally in Escherichia coli and Pseudomonas putida
Probab=49.81 E-value=1.6e+02 Score=25.35 Aligned_cols=132 Identities=16% Similarity=0.171 Sum_probs=73.0
Q ss_pred HHHHHHHHhcCCCcccEEEeecCCCCCCCCCCCcccccHHHHHHHHHHhhCCCCCCccEEEecC-CCHHHHHHHHHcCCC
Q psy15666 150 SLVAQTLKDLGTTYLDLFLIHWPGTFGVDSSSPQQISNRHTLWNALTELYNPNNGPLKSIGVSN-YTAKHLVNLIQNSKV 228 (339)
Q Consensus 150 ~~~~~sL~~L~~d~iDl~~lH~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~G~ir~iGvS~-~~~~~l~~~~~~~~~ 228 (339)
..+-+.|-+-|++.+-+=+ +.| ..++.+++++++ ..=-.||.-+ .+.++++.+++.+-
T Consensus 23 ~~~~~al~~~Gi~~iEit~-~t~-----------------~a~~~i~~l~~~--~~~~~vGAGTVl~~~~a~~a~~aGA- 81 (204)
T TIGR01182 23 LPLAKALIEGGLRVLEVTL-RTP-----------------VALDAIRLLRKE--VPDALIGAGTVLNPEQLRQAVDAGA- 81 (204)
T ss_pred HHHHHHHHHcCCCEEEEeC-CCc-----------------cHHHHHHHHHHH--CCCCEEEEEeCCCHHHHHHHHHcCC-
Confidence 3455667777776655432 222 334445555544 3224688887 67788888888652
Q ss_pred ceeEeccccCCCCCCcHHHHHHHHhCCceEEEecchhHHHHHHHHHcCC-----CHHHHH--HHHHhhC----CcE--Ee
Q psy15666 229 VPAVNQVEFHPHFLQPQELIDVCNQNKIALQAYASLGSTSTQIAKVHSV-----SPAQVL--LRWALQE----NFL--II 295 (339)
Q Consensus 229 ~~~~~q~~~~~~~~~~~~l~~~~~~~gi~v~~~~~l~~~l~~la~~~~~-----s~~~~a--l~~~l~~----~~~--~i 295 (339)
++. .+|.. ..+++++|+++|+.++. ..+.-.=...|.++|. -|+... ..|+.+- |.+ +-
T Consensus 82 ~Fi-----vsP~~--~~~v~~~~~~~~i~~iP-G~~TptEi~~A~~~Ga~~vKlFPA~~~GG~~yikal~~plp~i~~~p 153 (204)
T TIGR01182 82 QFI-----VSPGL--TPELAKHAQDHGIPIIP-GVATPSEIMLALELGITALKLFPAEVSGGVKMLKALAGPFPQVRFCP 153 (204)
T ss_pred CEE-----ECCCC--CHHHHHHHHHcCCcEEC-CCCCHHHHHHHHHCCCCEEEECCchhcCCHHHHHHHhccCCCCcEEe
Confidence 222 23332 26899999999999886 2221100112233442 344433 4665442 222 22
Q ss_pred cCCCCHHHHHHhhcC
Q psy15666 296 PKSVTPERIVQNIAL 310 (339)
Q Consensus 296 ~g~~~~~~l~enl~~ 310 (339)
+|--+++.+.+-+++
T Consensus 154 tGGV~~~N~~~~l~a 168 (204)
T TIGR01182 154 TGGINLANVRDYLAA 168 (204)
T ss_pred cCCCCHHHHHHHHhC
Confidence 355577888888875
No 71
>TIGR01862 N2-ase-Ialpha nitrogenase component I, alpha chain. This model represents the alpha chain of all three varieties (Mo-Fe, V-Fe, and Fe-Fe) of component I of nitrogenase.
Probab=49.74 E-value=2.6e+02 Score=27.25 Aligned_cols=165 Identities=14% Similarity=0.184 Sum_probs=95.0
Q ss_pred ccccccCHHHHHHHHHhhcccCCCCC-CceEEEeccCCCCCCCHHHHHHHHHHHHHhcCCCcccEEEeecCCCCCCCCCC
Q psy15666 103 TAQEYGNEASIGRALKVLLPKFNLKR-EDIFITSKLSPQYNGNADQVKSLVAQTLKDLGTTYLDLFLIHWPGTFGVDSSS 181 (339)
Q Consensus 103 ta~~y~~E~~lG~al~~~~~~~~~~R-~~~~i~tK~~~~~~~~~~~~~~~~~~sL~~L~~d~iDl~~lH~~~~~~~~~~~ 181 (339)
..-.||.|+.+-++|.+....+. . +-++|.|-+...-.+ +++...+++.-++++ +.++.+|.|++.+...
T Consensus 95 ~d~V~Gg~~~L~~aI~~~~~~~~--p~~~I~V~~tC~~~liG--dDi~~v~~~~~~~~~---~pvi~v~t~gf~g~~~-- 165 (443)
T TIGR01862 95 SDIVFGGEKKLKKLIHEAFTEFP--LIKAISVYATCPTGLIG--DDIEAVAKEVSKEIG---KDVVAVNCPGFAGVSQ-- 165 (443)
T ss_pred cceeeCcHHHHHHHHHHHHHhCC--ccceEEEECCChHHHhc--cCHHHHHHHHHHhcC---CCEEEEecCCccCCcc--
Confidence 34578888888999988766543 3 557777766543222 345555555545555 6899999996643111
Q ss_pred CcccccHHHHHHH-HHHhhC------CCCCCccEEEecCC--CHHHHHHHHHcCCCceeEeccccC--------------
Q psy15666 182 PQQISNRHTLWNA-LTELYN------PNNGPLKSIGVSNY--TAKHLVNLIQNSKVVPAVNQVEFH-------------- 238 (339)
Q Consensus 182 ~~~~~~~~~~~~~-l~~l~~------~~~G~ir~iGvS~~--~~~~l~~~~~~~~~~~~~~q~~~~-------------- 238 (339)
......+.++ ++.+.. .+++.|--||-.++ +.+.+.++++..++++...-....
T Consensus 166 ---~~G~~~a~~al~~~l~~~~~~~~~~~~~VNiig~~~~~~d~~el~~lL~~~Gl~v~~~~~~~~t~eei~~~~~A~ln 242 (443)
T TIGR01862 166 ---SKGHHIANIAVINDKVGTREKEITTEYDVNIIGEYNIGGDAWVMRIYLEEMGIQVVATFTGDGTYDEIRLMHKAKLN 242 (443)
T ss_pred ---chHHHHHHHHHHHHHhCCCCcccCCCCeEEEEccCcCcccHHHHHHHHHHcCCeEEEEECCCCCHHHHHhcccCCEE
Confidence 1112333332 333431 12378888986554 346888999988776543211111
Q ss_pred CC-CCC-cHHHHHHH-HhCCceEEEecchhH-----HHHHHHHHcCCCH
Q psy15666 239 PH-FLQ-PQELIDVC-NQNKIALQAYASLGS-----TSTQIAKVHSVSP 279 (339)
Q Consensus 239 ~~-~~~-~~~l~~~~-~~~gi~v~~~~~l~~-----~l~~la~~~~~s~ 279 (339)
+. .+. ....-++. ++.|++++...|++- .++++++.+|++.
T Consensus 243 iv~~~~~~~~~A~~L~er~GiP~~~~~p~G~~~t~~~l~~la~~~gi~~ 291 (443)
T TIGR01862 243 LVHCARSANYIANELEERYGIPWMKIDFFGFTYTAESLRAIAAFFGIEK 291 (443)
T ss_pred EEEChHHHHHHHHHHHHHhCCCeEecccCCHHHHHHHHHHHHHHhCCcH
Confidence 10 000 01223333 466999988777654 7888888888544
No 72
>PF00148 Oxidored_nitro: Nitrogenase component 1 type Oxidoreductase; InterPro: IPR000510 Enzymes belonging to this family include cofactor-requiring nitrogenases and protochlorophyllide reductase. The key enzymatic reactions in nitrogen fixation are catalysed by the nitrogenase complex, which has two components, the iron protein (component 2), and a component (component 1) which is either a molybdenum-iron, vanadium-iron or iron-iron protein. The enzyme (1.18.6.1 from EC) forms a hexamer of two alpha, two beta and two delta chains. Protochlorophyllide reductase (1.3.1.33 from EC) is involved in the light-dependent accumulation of chlorophyll, probably at the step of reduction of protochlorophyllide to chlorophyllide.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1QH1_C 1QH8_A 1H1L_C 1QGU_A 3AEK_C 3AET_C 3AER_C 3AEU_A 3AES_C 3AEQ_C ....
Probab=49.35 E-value=59 Score=30.88 Aligned_cols=158 Identities=17% Similarity=0.227 Sum_probs=85.5
Q ss_pred cccCHHHHHHHHHhhcccCCCCCCceEEEeccCCCCCCCHHHHHHHHHHHHHhcCCCcccEEEeecCCCCCCCCCCCccc
Q psy15666 106 EYGNEASIGRALKVLLPKFNLKREDIFITSKLSPQYNGNADQVKSLVAQTLKDLGTTYLDLFLIHWPGTFGVDSSSPQQI 185 (339)
Q Consensus 106 ~y~~E~~lG~al~~~~~~~~~~R~~~~i~tK~~~~~~~~~~~~~~~~~~sL~~L~~d~iDl~~lH~~~~~~~~~~~~~~~ 185 (339)
.||.|+.+-+++++...++. .+-++|.|-+.+.-.+ +++..-+++.-++.+. .++.+|.+++.+ ...
T Consensus 55 v~G~~~kL~~~i~~~~~~~~--P~~i~v~~sC~~~iIG--dD~~~v~~~~~~~~~~---~vi~v~~~gf~~------~~~ 121 (398)
T PF00148_consen 55 VFGGEEKLREAIKEIAEKYK--PKAIFVVTSCVPEIIG--DDIEAVARELQEEYGI---PVIPVHTPGFSG------SYS 121 (398)
T ss_dssp HHTSHHHHHHHHHHHHHHHS--TSEEEEEE-HHHHHTT--TTHHHHHHHHHHHHSS---EEEEEE--TTSS------SHH
T ss_pred hhcchhhHHHHHHHHHhcCC--CcEEEEECCCCHHHhC--CCHHHHHHHhhcccCC---cEEEEECCCccC------Ccc
Confidence 56788888888877655432 3557777776443222 3455555555566664 889999886521 111
Q ss_pred ccHHHHHHHHHHhh-C----CCCCCccEEEecCCC---HHHHHHHHHcCCCceeEeccc--------------cCCCCCC
Q psy15666 186 SNRHTLWNALTELY-N----PNNGPLKSIGVSNYT---AKHLVNLIQNSKVVPAVNQVE--------------FHPHFLQ 243 (339)
Q Consensus 186 ~~~~~~~~~l~~l~-~----~~~G~ir~iGvS~~~---~~~l~~~~~~~~~~~~~~q~~--------------~~~~~~~ 243 (339)
...+.++++|-+.. + .+++.|--+|.++.. ..++.++++..++.....-.. +|+....
T Consensus 122 ~G~~~a~~~l~~~~~~~~~~~~~~~VNiiG~~~~~~~d~~el~~lL~~~Gi~v~~~~~~~~t~~e~~~~~~A~lniv~~~ 201 (398)
T PF00148_consen 122 QGYDAALRALAEQLVKPPEEKKPRSVNIIGGSPLGPGDLEELKRLLEELGIEVNAVFPGGTTLEEIRKAPEAALNIVLCP 201 (398)
T ss_dssp HHHHHHHHHHHHHHTTGTTTTSSSEEEEEEESTBTHHHHHHHHHHHHHTTEEEEEEEETTBCHHHHHHGGGSSEEEESSC
T ss_pred chHHHHHHHHHhhcccccccCCCCceEEecCcCCCcccHHHHHHHHHHCCCceEEEeCCCCCHHHHHhCCcCcEEEEecc
Confidence 22455555444333 1 223788889999766 356778888776632221101 1222222
Q ss_pred c-H-HHHHHHHh-CCceEEE-ecchhH-----HHHHHHHHcC
Q psy15666 244 P-Q-ELIDVCNQ-NKIALQA-YASLGS-----TSTQIAKVHS 276 (339)
Q Consensus 244 ~-~-~l~~~~~~-~gi~v~~-~~~l~~-----~l~~la~~~~ 276 (339)
. . ...++.++ .|++++. -.|++- .++++++..|
T Consensus 202 ~~~~~~a~~L~e~~giP~~~~~~p~G~~~t~~~l~~i~~~lg 243 (398)
T PF00148_consen 202 EGGPYAAEWLEERFGIPYLYFPSPYGIEGTDAWLRAIAEALG 243 (398)
T ss_dssp CHHHHHHHHHHHHHT-EEEEEC-SBSHHHHHHHHHHHHHHHT
T ss_pred chhhHHHHHHHHHhCCCeeeccccccHHHHHHHHHHHHHHhC
Confidence 1 2 24555554 5999988 566654 4555555555
No 73
>TIGR02660 nifV_homocitr homocitrate synthase NifV. This family consists of the NifV clade of homocitrate synthases, most of which are found in operons for nitrogen fixation. Members are closely homologous to enzymes that include 2-isopropylmalate synthase, (R)-citramalate synthase, and homocitrate synthases associated with other processes. The homocitrate made by this enzyme becomes a part of the iron-molybdenum cofactor of nitrogenase.
Probab=48.38 E-value=2.4e+02 Score=26.59 Aligned_cols=95 Identities=11% Similarity=0.132 Sum_probs=56.4
Q ss_pred HHHHHHHHHHHhcCCCcccEEEeecCCCCCCCCCCCcccccHHHHHHHHHHhhCCCCC-CccEEEecCCCHHHHHHHHHc
Q psy15666 147 QVKSLVAQTLKDLGTTYLDLFLIHWPGTFGVDSSSPQQISNRHTLWNALTELYNPNNG-PLKSIGVSNYTAKHLVNLIQN 225 (339)
Q Consensus 147 ~~~~~~~~sL~~L~~d~iDl~~lH~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~G-~ir~iGvS~~~~~~l~~~~~~ 225 (339)
.-+..+-+.|.++|+++|++- +|. . .+.-++.++.+.+. + ..+..+++....+.++.+.+.
T Consensus 23 ~~k~~ia~~L~~~Gv~~IEvG---~p~----------~---~~~~~e~i~~i~~~--~~~~~i~~~~r~~~~di~~a~~~ 84 (365)
T TIGR02660 23 AEKLAIARALDEAGVDELEVG---IPA----------M---GEEERAVIRAIVAL--GLPARLMAWCRARDADIEAAARC 84 (365)
T ss_pred HHHHHHHHHHHHcCCCEEEEe---CCC----------C---CHHHHHHHHHHHHc--CCCcEEEEEcCCCHHHHHHHHcC
Confidence 445567777999999999984 341 1 11224455555544 3 367777777778888887765
Q ss_pred CCCceeEeccccCCCCC------C-------cHHHHHHHHhCCceEEE
Q psy15666 226 SKVVPAVNQVEFHPHFL------Q-------PQELIDVCNQNKIALQA 260 (339)
Q Consensus 226 ~~~~~~~~q~~~~~~~~------~-------~~~l~~~~~~~gi~v~~ 260 (339)
+ ++...+-++.|..+. . -.+.+++++++|+.+..
T Consensus 85 g-~~~i~i~~~~Sd~~~~~~~~~s~~e~l~~~~~~i~~ak~~g~~v~~ 131 (365)
T TIGR02660 85 G-VDAVHISIPVSDLQIEAKLRKDRAWVLERLARLVSFARDRGLFVSV 131 (365)
T ss_pred C-cCEEEEEEccCHHHHHHHhCcCHHHHHHHHHHHHHHHHhCCCEEEE
Confidence 3 322222223332111 1 13688899999987653
No 74
>cd01967 Nitrogenase_MoFe_alpha_like Nitrogenase_MoFe_alpha_like: Nitrogenase MoFe protein, alpha subunit_like. The nitrogenase enzyme catalyzes the ATP-dependent reduction of dinitrogen to ammonia. Three genetically distinct types of nitrogenase systems are known to exist: a molybdenum-dependent nitrogenase (Mo-nitrogenase), a vanadium dependent nitrogenase (V-nitrogenase), and an iron-only nitrogenase (Fe-nitrogenase). These nitrogenase systems consist of component 1 (MoFe protein, VFe protein or, FeFe protein respectively) and, component 2 (Fe protein). This group contains the alpha subunit of component 1 of all three different forms. The most widespread and best characterized of these systems is the Mo-nitrogenase. MoFe is an alpha2beta2 tetramer, the alternative nitrogenases are alpha2beta2delta2 hexamers having alpha and beta subunits similar to the alpha and beta subunits of MoFe. The role of the delta subunit is unknown. For MoFe, each alphabeta pair of subunits contains one
Probab=48.37 E-value=2.5e+02 Score=26.73 Aligned_cols=163 Identities=18% Similarity=0.210 Sum_probs=93.1
Q ss_pred ccccccCHHHHHHHHHhhcccCCCCCCceEEEeccCCCCCCCHHHHHHHHHHHHHhcCCCcccEEEeecCCCCCCCCCCC
Q psy15666 103 TAQEYGNEASIGRALKVLLPKFNLKREDIFITSKLSPQYNGNADQVKSLVAQTLKDLGTTYLDLFLIHWPGTFGVDSSSP 182 (339)
Q Consensus 103 ta~~y~~E~~lG~al~~~~~~~~~~R~~~~i~tK~~~~~~~~~~~~~~~~~~sL~~L~~d~iDl~~lH~~~~~~~~~~~~ 182 (339)
..-.||.|+.+-+++++....+. .+=++|.|-+.+.-.+ +++...+++.-++.+ +.++.+|.+++.+.
T Consensus 65 ~d~V~Gg~~~L~~~i~~~~~~~~--P~~i~v~~tC~~~~iG--dDi~~v~~~~~~~~~---~~vi~v~t~gf~g~----- 132 (406)
T cd01967 65 KDIVFGGEKKLKKAIKEAYERFP--PKAIFVYSTCPTGLIG--DDIEAVAKEASKELG---IPVIPVNCEGFRGV----- 132 (406)
T ss_pred cceeeCcHHHHHHHHHHHHHhCC--CCEEEEECCCchhhhc--cCHHHHHHHHHHhhC---CCEEEEeCCCeeCC-----
Confidence 33467888888999888755532 2346666666543222 345555555444554 78999999866431
Q ss_pred cccccHHHHHHHHHHhhC-------CCCCCccEEEecCCC--HHHHHHHHHcCCCceeEecccc--------------CC
Q psy15666 183 QQISNRHTLWNALTELYN-------PNNGPLKSIGVSNYT--AKHLVNLIQNSKVVPAVNQVEF--------------HP 239 (339)
Q Consensus 183 ~~~~~~~~~~~~l~~l~~-------~~~G~ir~iGvS~~~--~~~l~~~~~~~~~~~~~~q~~~--------------~~ 239 (339)
........++++|-+... .+++.|--||..++. ..++.++++..++++...-... |+
T Consensus 133 ~~~~G~~~a~~al~~~l~~~~~~~~~~~~~VNiig~~~~~~d~~el~~lL~~~Gi~~~~~~~~~~~~~~i~~~~~A~~ni 212 (406)
T cd01967 133 SQSLGHHIANDAILDHLVGTKEPEEKTPYDVNIIGEYNIGGDAWVIKPLLEELGIRVNATFTGDGTVDELRRAHRAKLNL 212 (406)
T ss_pred cccHHHHHHHHHHHHHhcCCCCcCCCCCCeEEEEeccccchhHHHHHHHHHHcCCEEEEEeCCCCCHHHHhhCccCCEEE
Confidence 111224455555444321 123778899987653 4788889988876543211111 11
Q ss_pred CCCC--cHHHH-HHHHhCCceEEEecchhH-----HHHHHHHHcCC
Q psy15666 240 HFLQ--PQELI-DVCNQNKIALQAYASLGS-----TSTQIAKVHSV 277 (339)
Q Consensus 240 ~~~~--~~~l~-~~~~~~gi~v~~~~~l~~-----~l~~la~~~~~ 277 (339)
.... ...+. .+.++.|+.++.-.|.+- .++.+++-+|.
T Consensus 213 v~~~~~~~~~a~~L~~r~GiP~~~~~p~G~~~t~~~l~~l~~~lg~ 258 (406)
T cd01967 213 VHCSRSMNYLAREMEERYGIPYMEVNFYGFEDTSESLRKIAKFFGD 258 (406)
T ss_pred EEChHHHHHHHHHHHHhhCCCEEEecCCcHHHHHHHHHHHHHHhCC
Confidence 1111 11222 233477898876666654 77788888886
No 75
>COG2185 Sbm Methylmalonyl-CoA mutase, C-terminal domain/subunit (cobalamin-binding) [Lipid metabolism]
Probab=46.32 E-value=61 Score=26.25 Aligned_cols=56 Identities=14% Similarity=0.242 Sum_probs=42.4
Q ss_pred ccEEEecCCCH--HHHHHHHHcCCCceeEeccccCCCCCCcHHHHHHHHhCCceEEEecchhH
Q psy15666 206 LKSIGVSNYTA--KHLVNLIQNSKVVPAVNQVEFHPHFLQPQELIDVCNQNKIALQAYASLGS 266 (339)
Q Consensus 206 ir~iGvS~~~~--~~l~~~~~~~~~~~~~~q~~~~~~~~~~~~l~~~~~~~gi~v~~~~~l~~ 266 (339)
+--+|...|+. ..+..++..+++. ++ +....+.+.+.+..+.++++.+++.|.+.+
T Consensus 17 vak~GlDgHd~gakvia~~l~d~Gfe--Vi---~~g~~~tp~e~v~aA~~~dv~vIgvSsl~g 74 (143)
T COG2185 17 VAKLGLDGHDRGAKVIARALADAGFE--VI---NLGLFQTPEEAVRAAVEEDVDVIGVSSLDG 74 (143)
T ss_pred EeccCccccccchHHHHHHHHhCCce--EE---ecCCcCCHHHHHHHHHhcCCCEEEEEeccc
Confidence 34567777775 6788888888773 32 344455568999999999999999999987
No 76
>PRK05414 urocanate hydratase; Provisional
Probab=44.69 E-value=64 Score=31.78 Aligned_cols=109 Identities=17% Similarity=0.127 Sum_probs=72.1
Q ss_pred CHHHHHHHHHhhcccCCCCCCceEEEeccCCCCCCCH--HHH--------HHHHHHHHHhcCCCcccEEEeecCCCCCCC
Q psy15666 109 NEASIGRALKVLLPKFNLKREDIFITSKLSPQYNGNA--DQV--------KSLVAQTLKDLGTTYLDLFLIHWPGTFGVD 178 (339)
Q Consensus 109 ~E~~lG~al~~~~~~~~~~R~~~~i~tK~~~~~~~~~--~~~--------~~~~~~sL~~L~~d~iDl~~lH~~~~~~~~ 178 (339)
.-+.+..+-+..+. +--+.++|+++-++.-....| ..+ +-.-.+.-+|+.+.|+|.+-
T Consensus 149 TyeT~~~a~rk~f~--g~L~G~~~lTaGLGGMgGAQPlA~~mag~v~i~vEvd~~ri~kR~~~gyld~~~---------- 216 (556)
T PRK05414 149 TYETFAEAARQHFG--GDLAGRLVLTAGLGGMGGAQPLAATMAGAVCLAVEVDESRIDKRLRTGYLDEKA---------- 216 (556)
T ss_pred HHHHHHHHHHHhcC--CCCceeEEEEecCCccccccHHHHHhcCceEEEEEECHHHHHHHHhCCcceeEc----------
Confidence 33445555555542 224778999999875532110 000 01123445788999998531
Q ss_pred CCCCcccccHHHHHHHHHHhhCCCCCCccEEEecCCCHHHHHHHHHcC-CCceeEeccccC
Q psy15666 179 SSSPQQISNRHTLWNALTELYNPNNGPLKSIGVSNYTAKHLVNLIQNS-KVVPAVNQVEFH 238 (339)
Q Consensus 179 ~~~~~~~~~~~~~~~~l~~l~~~~~G~ir~iGvS~~~~~~l~~~~~~~-~~~~~~~q~~~~ 238 (339)
.+++++++..++.+++ |+..+||+-..-.+.+.++++.. .++...-|.+.|
T Consensus 217 -------~~Ldeal~~~~~a~~~--~~~~SIg~~GNaadv~~~l~~~~i~pDlvtDQTSaH 268 (556)
T PRK05414 217 -------DDLDEALALAEEAKAA--GEPLSIGLLGNAADVLPELVRRGIRPDLVTDQTSAH 268 (556)
T ss_pred -------CCHHHHHHHHHHHHHc--CCceEEEEeccHHHHHHHHHHcCCCCCccCcCcccc
Confidence 1288999999999999 99999999999999999999875 333345666654
No 77
>TIGR01228 hutU urocanate hydratase. This model represents the second of four enzymes involved in the degradation of histidine to glutamate.
Probab=44.68 E-value=61 Score=31.76 Aligned_cols=109 Identities=16% Similarity=0.087 Sum_probs=72.3
Q ss_pred CHHHHHHHHHhhcccCCCCCCceEEEeccCCCCCCCHH--HH--------HHHHHHHHHhcCCCcccEEEeecCCCCCCC
Q psy15666 109 NEASIGRALKVLLPKFNLKREDIFITSKLSPQYNGNAD--QV--------KSLVAQTLKDLGTTYLDLFLIHWPGTFGVD 178 (339)
Q Consensus 109 ~E~~lG~al~~~~~~~~~~R~~~~i~tK~~~~~~~~~~--~~--------~~~~~~sL~~L~~d~iDl~~lH~~~~~~~~ 178 (339)
.-+.+..+-+..+.. . -+.++|+++-++.-....|- .+ +-.-.+.-+|+.+.|+|.+.
T Consensus 140 TyeT~~~aark~f~~-~-L~G~~~lTaGLGGMgGAQPlA~~mag~v~i~vEvd~~ri~kR~~~gyld~~~---------- 207 (545)
T TIGR01228 140 TYETFAELARQHFGG-S-LKGKWVLTAGLGGMGGAQPLAVTMNGGVSIAVEVDESRIDKRLETKYCDEQT---------- 207 (545)
T ss_pred HHHHHHHHHHHhcCC-C-CceeEEEEeCCCccccccHHHHHHcCceEEEEEECHHHHHHHHhcCcceeEc----------
Confidence 344455555655532 2 37889999988755321100 00 01123445788899998531
Q ss_pred CCCCcccccHHHHHHHHHHhhCCCCCCccEEEecCCCHHHHHHHHHcC-CCceeEeccccC
Q psy15666 179 SSSPQQISNRHTLWNALTELYNPNNGPLKSIGVSNYTAKHLVNLIQNS-KVVPAVNQVEFH 238 (339)
Q Consensus 179 ~~~~~~~~~~~~~~~~l~~l~~~~~G~ir~iGvS~~~~~~l~~~~~~~-~~~~~~~q~~~~ 238 (339)
.+++++++..++.+++ |+..+||+-..-.+.+.++++.. .++...-|.+.|
T Consensus 208 -------~~ldeal~~~~~a~~~--~~~~SIg~~GNaadv~~~l~~r~i~pDlvtDQTSaH 259 (545)
T TIGR01228 208 -------DSLDEALARAEEAKAE--GKPISIGLLGNAAEVLPELLKRGVVPDVVTDQTSAH 259 (545)
T ss_pred -------CCHHHHHHHHHHHHHc--CCceEEEeeccHHHHHHHHHHcCCCCCCcCCCCccc
Confidence 2288999999999999 99999999999999999999975 333345566654
No 78
>COG2987 HutU Urocanate hydratase [Amino acid transport and metabolism]
Probab=44.53 E-value=48 Score=32.08 Aligned_cols=93 Identities=22% Similarity=0.190 Sum_probs=63.2
Q ss_pred CCCceEEEeccCCCCCCC--HHHH------HHHH--HHHHHhcCCCcccEEEeecCCCCCCCCCCCcccccHHHHHHHHH
Q psy15666 127 KREDIFITSKLSPQYNGN--ADQV------KSLV--AQTLKDLGTTYLDLFLIHWPGTFGVDSSSPQQISNRHTLWNALT 196 (339)
Q Consensus 127 ~R~~~~i~tK~~~~~~~~--~~~~------~~~~--~~sL~~L~~d~iDl~~lH~~~~~~~~~~~~~~~~~~~~~~~~l~ 196 (339)
-+.++++++-++...... +..+ .-.| .+.-+||.++|+|.. . ..++++++..+
T Consensus 165 L~Gk~~lTaGLGGMgGAQplA~~ma~~v~i~vevd~srI~~Rl~t~y~d~~---------------a--~~ldeAl~~a~ 227 (561)
T COG2987 165 LKGKWVLTAGLGGMGGAQPLAATMAGAVCIAVEVDESRIDKRLRTGYLDEI---------------A--ETLDEALALAE 227 (561)
T ss_pred ccceEEEecCCCcccccchHHHHhcCceEEEEEeCHHHHHHHHhcchhhhh---------------c--CCHHHHHHHHH
Confidence 477899999887542211 0011 0011 223368888999841 1 23889999999
Q ss_pred HhhCCCCCCccEEEecCCCHHHHHHHHHcC-CCceeEeccccC
Q psy15666 197 ELYNPNNGPLKSIGVSNYTAKHLVNLIQNS-KVVPAVNQVEFH 238 (339)
Q Consensus 197 ~l~~~~~G~ir~iGvS~~~~~~l~~~~~~~-~~~~~~~q~~~~ 238 (339)
+..++ |+-.+||+-..-.+.+.++++.. .++...-|.+.|
T Consensus 228 ~~~~a--g~p~SIgl~GNaaei~~~l~~r~~~pD~vtDQTsaH 268 (561)
T COG2987 228 EATAA--GEPISIGLLGNAAEILPELLRRGIRPDLVTDQTSAH 268 (561)
T ss_pred HHHhc--CCceEEEEeccHHHHHHHHHHcCCCCceeccccccc
Confidence 99999 99999999999999999999885 333345566554
No 79
>PRK14478 nitrogenase molybdenum-cofactor biosynthesis protein NifE; Provisional
Probab=44.18 E-value=3.2e+02 Score=26.84 Aligned_cols=160 Identities=14% Similarity=0.186 Sum_probs=89.3
Q ss_pred ccccccCHHHHHHHHHhhcccCCCCCCceEEEeccCCCCCCCHHHHHHHHHHHHHhcCCCcccEEEeecCCCCCCCCCCC
Q psy15666 103 TAQEYGNEASIGRALKVLLPKFNLKREDIFITSKLSPQYNGNADQVKSLVAQTLKDLGTTYLDLFLIHWPGTFGVDSSSP 182 (339)
Q Consensus 103 ta~~y~~E~~lG~al~~~~~~~~~~R~~~~i~tK~~~~~~~~~~~~~~~~~~sL~~L~~d~iDl~~lH~~~~~~~~~~~~ 182 (339)
..-.||.|+.|-++|.+...... .+=++|.|-+.+.-.+ +++..-+++.-+++| +.++.++.+++.+.
T Consensus 97 ~dvVfGg~~kL~~~I~ei~~~~~--P~~I~V~tTC~~~lIG--dDi~~v~~~~~~~~~---~pvi~v~t~Gf~g~----- 164 (475)
T PRK14478 97 TDVVFGGEKKLFKAIDEIIEKYA--PPAVFVYQTCVVALIG--DDIDAVCKRAAEKFG---IPVIPVNSPGFVGN----- 164 (475)
T ss_pred CceeeCCHHHHHHHHHHHHHhcC--CCEEEEeCCChHHHhc--cCHHHHHHHHHHhhC---CCEEEEECCCcccc-----
Confidence 34467888888899888765532 3446676666443222 335555555444554 68888998866431
Q ss_pred cccccHHHHHHHHHH-hhC------CCCCCccEEEecCCC--HHHHHHHHHcCCCceeEeccccC--------------C
Q psy15666 183 QQISNRHTLWNALTE-LYN------PNNGPLKSIGVSNYT--AKHLVNLIQNSKVVPAVNQVEFH--------------P 239 (339)
Q Consensus 183 ~~~~~~~~~~~~l~~-l~~------~~~G~ir~iGvS~~~--~~~l~~~~~~~~~~~~~~q~~~~--------------~ 239 (339)
.......++++|-+ +.. .+.+.|--||-.+.. .+.+.++++..++++...-.... +
T Consensus 165 -~~~G~~~a~~al~~~l~~~~~~~~~~~~~VNiiG~~~~~gd~~elk~lL~~~Gl~v~~~~~~~~s~eei~~~~~A~lni 243 (475)
T PRK14478 165 -KNLGNKLAGEALLDHVIGTVEPEDTTPYDINILGEYNLAGELWQVKPLLDRLGIRVVACITGDARYDDVASAHRARANM 243 (475)
T ss_pred -hhhhHHHHHHHHHHHHhccCCccCCCCCeEEEEeCCCCCCCHHHHHHHHHHcCCeEEEEcCCCCCHHHHHhcccCcEEE
Confidence 11123444443332 321 112678888866644 36888999988775542111110 1
Q ss_pred CCCCc--HHHHHHHH-hCCceEEEecchhH-----HHHHHHHHc
Q psy15666 240 HFLQP--QELIDVCN-QNKIALQAYASLGS-----TSTQIAKVH 275 (339)
Q Consensus 240 ~~~~~--~~l~~~~~-~~gi~v~~~~~l~~-----~l~~la~~~ 275 (339)
..... ...-++.+ +.|+.++.-.|++- .++++++.+
T Consensus 244 v~~~~~~~~~A~~L~erfGiP~~~~~p~G~~~T~~~l~~la~~~ 287 (475)
T PRK14478 244 MVCSGAMINLARKMEERYGIPFFEGSFYGIEDTSDSLRQIARLL 287 (475)
T ss_pred EEcHHHHHHHHHHHHHHhCCCEEecCCCcHHHHHHHHHHHHHHH
Confidence 00010 12333333 55999887666554 788888887
No 80
>PRK08227 autoinducer 2 aldolase; Validated
Probab=43.14 E-value=86 Score=28.26 Aligned_cols=87 Identities=13% Similarity=0.053 Sum_probs=52.1
Q ss_pred hhHHHHHHhCCCeEEEeccCCCCCCCCCCChH----HHHHHHHHcCCCh-----hHHHHHHHHhhcchhhhhccccccCC
Q psy15666 11 QELIDVCNQNKIALQAYASLGSTSSNPLIADS----TLAQIAKVHSVSP-----AQVLLRWALQENFCKFIKLYHKVHSV 81 (339)
Q Consensus 11 ~~~~~~~~~~~i~~~~yspL~~g~~~~~~~~~----~l~~ia~~~~~s~-----aqv~l~w~l~~g~~~i~~s~~~~~~~ 81 (339)
.++.+-|+++||.++++.|-|.. +-+++ .-.++|.+.|... ..=.++.+.....+++.=+.++....
T Consensus 130 ~~v~~ea~~~G~Plla~~prG~~----~~~~~~~ia~aaRiaaELGADiVK~~y~~~~f~~vv~a~~vPVviaGG~k~~~ 205 (264)
T PRK08227 130 IQLVDAGLRYGMPVMAVTAVGKD----MVRDARYFSLATRIAAEMGAQIIKTYYVEEGFERITAGCPVPIVIAGGKKLPE 205 (264)
T ss_pred HHHHHHHHHhCCcEEEEecCCCC----cCchHHHHHHHHHHHHHHcCCEEecCCCHHHHHHHHHcCCCcEEEeCCCCCCH
Confidence 36889999999999998888765 22222 2345667777422 11245555554433333333444444
Q ss_pred chHHHHHHHHhhhccCcccccc
Q psy15666 82 SPAQVLLRWALQENFCYRAIDT 103 (339)
Q Consensus 82 ~n~~~~~~~al~~~~g~~~iDt 103 (339)
++.-..+..+++ .|..-+.+
T Consensus 206 ~~~L~~v~~ai~--aGa~Gv~~ 225 (264)
T PRK08227 206 RDALEMCYQAID--EGASGVDM 225 (264)
T ss_pred HHHHHHHHHHHH--cCCceeee
Confidence 556677888888 66554443
No 81
>PRK06015 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=43.09 E-value=2.2e+02 Score=24.54 Aligned_cols=119 Identities=13% Similarity=0.048 Sum_probs=69.9
Q ss_pred HHHHHHHHHHhhCCCCCCccEEEecCCCHHHHH---HHHHcCCCceeEeccccCCCCCCcHHHHHHHHhCCceEEEecch
Q psy15666 188 RHTLWNALTELYNPNNGPLKSIGVSNYTAKHLV---NLIQNSKVVPAVNQVEFHPHFLQPQELIDVCNQNKIALQAYASL 264 (339)
Q Consensus 188 ~~~~~~~l~~l~~~~~G~ir~iGvS~~~~~~l~---~~~~~~~~~~~~~q~~~~~~~~~~~~l~~~~~~~gi~v~~~~~l 264 (339)
.+++.+..+.|.+. =|+.|=|+..++..++ ++.+.. +. +......--..+-.+.|.+.|-.++..--+
T Consensus 15 ~~~a~~ia~al~~g---Gi~~iEit~~tp~a~~~I~~l~~~~---~~---~~vGAGTVl~~e~a~~ai~aGA~FivSP~~ 85 (201)
T PRK06015 15 VEHAVPLARALAAG---GLPAIEITLRTPAALDAIRAVAAEV---EE---AIVGAGTILNAKQFEDAAKAGSRFIVSPGT 85 (201)
T ss_pred HHHHHHHHHHHHHC---CCCEEEEeCCCccHHHHHHHHHHHC---CC---CEEeeEeCcCHHHHHHHHHcCCCEEECCCC
Confidence 66777777888765 4789999887765444 333222 11 111111111256778888999888763333
Q ss_pred hHHHHHHHHHcCCCHHHHHHHHHhhCCcEEecCCCCHHHHHHhhcC--C----CC---C-CHHHHHHHhcCCCCCC
Q psy15666 265 GSTSTQIAKVHSVSPAQVLLRWALQENFLIIPKSVTPERIVQNIAL--D----FE---L-SPEEVKAIENIPNKQK 330 (339)
Q Consensus 265 ~~~l~~la~~~~~s~~~~al~~~l~~~~~~i~g~~~~~~l~enl~~--~----~~---L-~~~~~~~l~~~~~~~r 330 (339)
. .-.++++.+++...+||+.++.++....+. + || + -+.-++.|.......+
T Consensus 86 ~---------------~~vi~~a~~~~i~~iPG~~TptEi~~A~~~Ga~~vK~FPa~~~GG~~yikal~~plp~~~ 146 (201)
T PRK06015 86 T---------------QELLAAANDSDVPLLPGAATPSEVMALREEGYTVLKFFPAEQAGGAAFLKALSSPLAGTF 146 (201)
T ss_pred C---------------HHHHHHHHHcCCCEeCCCCCHHHHHHHHHCCCCEEEECCchhhCCHHHHHHHHhhCCCCc
Confidence 3 234566666677777777777777777765 2 22 2 2445555555554433
No 82
>cd07944 DRE_TIM_HOA_like 4-hydroxy-2-oxovalerate aldolase-like, N-terminal catalytic TIM barrel domain. This family of bacterial enzymes is sequence-similar to 4-hydroxy-2-oxovalerate aldolase (HOA) but its exact function is unknown. This family includes the Bacteroides vulgatus Bvu_2661 protein and belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues t
Probab=43.05 E-value=2.2e+02 Score=25.52 Aligned_cols=107 Identities=13% Similarity=0.018 Sum_probs=57.6
Q ss_pred HHHHHHHHHHHHhcCCCcccEEEeecCCCCCCCCCCCcccccHHHHHHHHHHhhCCCCCCccEEEecCCC---HHHHHHH
Q psy15666 146 DQVKSLVAQTLKDLGTTYLDLFLIHWPGTFGVDSSSPQQISNRHTLWNALTELYNPNNGPLKSIGVSNYT---AKHLVNL 222 (339)
Q Consensus 146 ~~~~~~~~~sL~~L~~d~iDl~~lH~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~G~ir~iGvS~~~---~~~l~~~ 222 (339)
...+..+-+.|.++|+|+|++-+........ .........+.++.+..+.+ +..+..+++... .+.+..+
T Consensus 19 ~~~~~~ia~~L~~~GVd~IEvG~~~~~~~~~----~~~~~~~~~~~~~~i~~~~~---~~~~~~~~~~~~~~~~~~l~~a 91 (266)
T cd07944 19 DEFVKAIYRALAAAGIDYVEIGYRSSPEKEF----KGKSAFCDDEFLRRLLGDSK---GNTKIAVMVDYGNDDIDLLEPA 91 (266)
T ss_pred HHHHHHHHHHHHHCCCCEEEeecCCCCcccc----CCCccCCCHHHHHHHHhhhc---cCCEEEEEECCCCCCHHHHHHH
Confidence 4556677778999999999987655431000 00011112456666666543 235556655543 3555554
Q ss_pred HHcCCCceeEeccccCCCCCCcHHHHHHHHhCCceEEEe
Q psy15666 223 IQNSKVVPAVNQVEFHPHFLQPQELIDVCNQNKIALQAY 261 (339)
Q Consensus 223 ~~~~~~~~~~~q~~~~~~~~~~~~l~~~~~~~gi~v~~~ 261 (339)
.+. +++..-+.++.+.+..- .+.+++++++|+.+...
T Consensus 92 ~~~-gv~~iri~~~~~~~~~~-~~~i~~ak~~G~~v~~~ 128 (266)
T cd07944 92 SGS-VVDMIRVAFHKHEFDEA-LPLIKAIKEKGYEVFFN 128 (266)
T ss_pred hcC-CcCEEEEecccccHHHH-HHHHHHHHHCCCeEEEE
Confidence 433 34322233333322212 67889999999876543
No 83
>COG2861 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=42.89 E-value=2.4e+02 Score=25.03 Aligned_cols=49 Identities=20% Similarity=0.293 Sum_probs=30.7
Q ss_pred cEEEeecC-CCCCCCCCCCc---ccccHHHHHHHHHHhhCCCCCCccEEEecCCCH
Q psy15666 165 DLFLIHWP-GTFGVDSSSPQ---QISNRHTLWNALTELYNPNNGPLKSIGVSNYTA 216 (339)
Q Consensus 165 Dl~~lH~~-~~~~~~~~~~~---~~~~~~~~~~~l~~l~~~~~G~ir~iGvS~~~~ 216 (339)
+-++||-| .+.+....++. .....+++.+.+++.++. ---++|+.||.-
T Consensus 78 ~evlih~PmeP~~~~~~e~gtL~~~~s~~e~~~rl~~a~~~---v~~~~GlnNhmG 130 (250)
T COG2861 78 HEVLIHMPMEPFSYPKIEPGTLRPGMSAEEILRRLRKAMNK---VPDAVGLNNHMG 130 (250)
T ss_pred CEEEEeccCCcccCCCCCCCCcccCCCHHHHHHHHHHHHhh---Cccceeehhhhh
Confidence 34789998 33332222222 112367888888888765 556899999864
No 84
>PRK09284 thiamine biosynthesis protein ThiC; Provisional
Probab=42.50 E-value=40 Score=33.44 Aligned_cols=101 Identities=19% Similarity=0.159 Sum_probs=54.9
Q ss_pred CCCCCCchhHHHHHHhCCCeEEEeccCCCCCCCCCCCh-------------HHHHHHHHHcCCChhHHHHHHHHhhcchh
Q psy15666 4 HPHFLQPQELIDVCNQNKIALQAYASLGSTSSNPLIAD-------------STLAQIAKVHSVSPAQVLLRWALQENFCK 70 (339)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~i~~~~yspL~~g~~~~~~~~-------------~~l~~ia~~~~~s~aqv~l~w~l~~g~~~ 70 (339)
||+|..-+++++.|+++++.+ +||-|...+-+.| -+|.+.|.++|+.+ . +-
T Consensus 352 NplYe~FD~ileI~k~YDVtl----SLGDGLRPG~iaDA~D~AQ~~EL~tLGELt~rA~e~gVQV---M---------IE 415 (607)
T PRK09284 352 NFLYTHFEEICEIMAAYDVSF----SLGDGLRPGSIADANDEAQFAELETLGELTKIAWEHDVQV---M---------IE 415 (607)
T ss_pred CcHHHHHHHHHHHHHHhCeee----eccCCcCCCccccCCcHHHHHHHHHHHHHHHHHHHcCCeE---E---------EE
Confidence 576666678999999999987 4777754443432 24556666666631 1 00
Q ss_pred hhhccccccCCchHHHHHHHHhhh---ccCcccccccccccC-HHHHHHHHHhh
Q psy15666 71 FIKLYHKVHSVSPAQVLLRWALQE---NFCYRAIDTAQEYGN-EASIGRALKVL 120 (339)
Q Consensus 71 i~~s~~~~~~~~n~~~~~~~al~~---~~g~~~iDta~~y~~-E~~lG~al~~~ 120 (339)
=||=..-..++.|.+......-+. +.|-=.-|.|+.|.. -..||.|+..+
T Consensus 416 GPGHVPl~~I~~N~~lqk~lc~~APfYvLGPLvTDIApGYDHItsAIGaA~aa~ 469 (607)
T PRK09284 416 GPGHVPMHLIKENMDKQLEHCHEAPFYTLGPLTTDIAPGYDHITSAIGAAMIGW 469 (607)
T ss_pred CCCCCcHHHHHHHHHHHHHhhCCCCeeecCCcccccCCCchHHHHHHHHHHHHH
Confidence 111111122333333332222220 123334577888875 56688888754
No 85
>PRK05692 hydroxymethylglutaryl-CoA lyase; Provisional
Probab=40.61 E-value=1.3e+02 Score=27.36 Aligned_cols=99 Identities=11% Similarity=0.099 Sum_probs=58.1
Q ss_pred HHHHHHHHHHHhcCCCcccEEEeecCCCCCCCCCCCcccccHHHHHHHHHHhhCCCCCCccEEEecCCCHHHHHHHHHcC
Q psy15666 147 QVKSLVAQTLKDLGTTYLDLFLIHWPGTFGVDSSSPQQISNRHTLWNALTELYNPNNGPLKSIGVSNYTAKHLVNLIQNS 226 (339)
Q Consensus 147 ~~~~~~~~sL~~L~~d~iDl~~lH~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~G~ir~iGvS~~~~~~l~~~~~~~ 226 (339)
.-+..+-+.|.++|+++|.+-.++.|.. -|. ..+.++.+..+.+. ..++..++. .+...++.+++.+
T Consensus 26 e~k~~ia~~L~~~Gv~~IEvgsf~~p~~------~p~----~~d~~e~~~~l~~~--~~~~~~~l~-~~~~~ie~A~~~g 92 (287)
T PRK05692 26 ADKIALIDRLSAAGLSYIEVASFVSPKW------VPQ----MADAAEVMAGIQRR--PGVTYAALT-PNLKGLEAALAAG 92 (287)
T ss_pred HHHHHHHHHHHHcCCCEEEeCCCcCccc------ccc----cccHHHHHHhhhcc--CCCeEEEEe-cCHHHHHHHHHcC
Confidence 4556677889999999999875554421 111 12235555555554 446666655 4778888888764
Q ss_pred CCceeEeccccCCCC------CC-------cHHHHHHHHhCCceEE
Q psy15666 227 KVVPAVNQVEFHPHF------LQ-------PQELIDVCNQNKIALQ 259 (339)
Q Consensus 227 ~~~~~~~q~~~~~~~------~~-------~~~l~~~~~~~gi~v~ 259 (339)
++...+-++.|..+ .. -.+.+++++++|+.+.
T Consensus 93 -~~~v~i~~~~s~~~~~~n~~~~~~e~l~~~~~~v~~ak~~g~~v~ 137 (287)
T PRK05692 93 -ADEVAVFASASEAFSQKNINCSIAESLERFEPVAEAAKQAGVRVR 137 (287)
T ss_pred -CCEEEEEEecCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCEEE
Confidence 22222222332211 11 1468999999998875
No 86
>PRK13958 N-(5'-phosphoribosyl)anthranilate isomerase; Provisional
Probab=40.02 E-value=1.1e+02 Score=26.35 Aligned_cols=79 Identities=11% Similarity=0.117 Sum_probs=47.4
Q ss_pred HHHhcCCCcccEEEeecCCCCCCCCCCCcccccHHHHHHHHHHhhCCCCCCccEEEec-CCCHHHHHHHHHcCCCceeEe
Q psy15666 155 TLKDLGTTYLDLFLIHWPGTFGVDSSSPQQISNRHTLWNALTELYNPNNGPLKSIGVS-NYTAKHLVNLIQNSKVVPAVN 233 (339)
Q Consensus 155 sL~~L~~d~iDl~~lH~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~G~ir~iGvS-~~~~~~l~~~~~~~~~~~~~~ 233 (339)
....+|.||+-+.+.... +... ..+..+.+.+.. . +.++.+||. |.+++.+.++.+..+ ++++
T Consensus 16 ~~~~~GaD~iGfIf~~~S---------pR~V--~~~~a~~i~~~~-~--~~~~~VgVf~~~~~~~i~~~~~~~~--~d~v 79 (207)
T PRK13958 16 AASQLPIDAIGFIHYEKS---------KRHQ--TITQIKKLASAV-P--NHIDKVCVVVNPDLTTIEHILSNTS--INTI 79 (207)
T ss_pred HHHHcCCCEEEEecCCCC---------cccC--CHHHHHHHHHhC-C--CCCCEEEEEeCCCHHHHHHHHHhCC--CCEE
Confidence 345699999998643321 1111 123334444433 3 568899996 788899999988764 4888
Q ss_pred ccccCCCCCCcHHHHHHHHh
Q psy15666 234 QVEFHPHFLQPQELIDVCNQ 253 (339)
Q Consensus 234 q~~~~~~~~~~~~l~~~~~~ 253 (339)
|++-.. . .+.+...++
T Consensus 80 QLHG~e---~-~~~~~~l~~ 95 (207)
T PRK13958 80 QLHGTE---S-IDFIQEIKK 95 (207)
T ss_pred EECCCC---C-HHHHHHHhh
Confidence 887431 2 344444544
No 87
>KOG0259|consensus
Probab=39.94 E-value=1.9e+02 Score=27.58 Aligned_cols=57 Identities=18% Similarity=0.113 Sum_probs=31.5
Q ss_pred ccCCchHHHHHHHHhhhccCc--ccccccccccCHHHHHHHHHhhcccCCCCCCceEEEecc
Q psy15666 78 VHSVSPAQVLLRWALQENFCY--RAIDTAQEYGNEASIGRALKVLLPKFNLKREDIFITSKL 137 (339)
Q Consensus 78 ~~~~~n~~~~~~~al~~~~g~--~~iDta~~y~~E~~lG~al~~~~~~~~~~R~~~~i~tK~ 137 (339)
-+.-..+..++.+++. .|. .+-.+...-..-+.+.+.+...+. +.+..+++|+++-+
T Consensus 77 ~~ts~~a~~Av~~al~--Sgk~N~Yaps~G~~~AR~AVAeYl~~~l~-~kl~a~DV~ltsGC 135 (447)
T KOG0259|consen 77 FRTSQEAEQAVVDALR--SGKGNGYAPSVGILPARRAVAEYLNRDLP-NKLTADDVVLTSGC 135 (447)
T ss_pred ccCCHHHHHHHHHHHh--cCCCCCcCCccccHHHHHHHHHHhhcCCC-CccCcCceEEeccc
Confidence 3445566677778887 443 111111111135566666654333 36778899998755
No 88
>TIGR02026 BchE magnesium-protoporphyrin IX monomethyl ester anaerobic oxidative cyclase. This model respresents the cobalamin-dependent oxidative cyclase responsible for forming the distinctive E-ring of the chlorin ring system under anaerobic conditions. This step is essential in the biosynthesis of both bacteriochlorophyll and chlorophyll under anaerobic conditions (a separate enzyme, AcsF, acts under aerobic conditions). This model identifies two clades of sequences, one from photosynthetic, non-cyanobacterial bacteria and another including Synechocystis and several non-photosynthetic bacteria. The function of the Synechocystis gene is supported by gene clustering with other photosynthetic genes, so the purpose of the gene in the non-photosynthetic bacteria is uncertain. Note that homologs of this gene are not found in plants which rely solely on the aerobic cyclase.
Probab=39.07 E-value=2.7e+02 Score=27.54 Aligned_cols=118 Identities=8% Similarity=0.090 Sum_probs=69.0
Q ss_pred cHHHHHHHHHHhhCCCCCCccEEEecC----CCHHHHHHHHH----cCCCce-eEeccccCCCCCCcHHHHHHHHhCCce
Q psy15666 187 NRHTLWNALTELYNPNNGPLKSIGVSN----YTAKHLVNLIQ----NSKVVP-AVNQVEFHPHFLQPQELIDVCNQNKIA 257 (339)
Q Consensus 187 ~~~~~~~~l~~l~~~~~G~ir~iGvS~----~~~~~l~~~~~----~~~~~~-~~~q~~~~~~~~~~~~l~~~~~~~gi~ 257 (339)
..+.+++.++.++++ .-++.+-++. .+...+.++++ ...... -..+...+..... .++++.+++.|+.
T Consensus 223 s~e~Vv~Ei~~l~~~--~gv~~~~~~Dd~f~~~~~~~~~l~~~l~~~~~l~i~w~~~~r~~~i~~d-~ell~~l~~aG~~ 299 (497)
T TIGR02026 223 DPKKFVDEIEWLVRT--HGVGFFILADEEPTINRKKFQEFCEEIIARNPISVTWGINTRVTDIVRD-ADILHLYRRAGLV 299 (497)
T ss_pred CHHHHHHHHHHHHHH--cCCCEEEEEecccccCHHHHHHHHHHHHhcCCCCeEEEEecccccccCC-HHHHHHHHHhCCc
Confidence 478899999999876 5688887764 23344444333 221221 1234444444333 6899999999986
Q ss_pred EEEecchhH---HHHHHHHHcCCCHHH--HHHHHHhhCCc----EEecC--CCCHHHHHHhhc
Q psy15666 258 LQAYASLGS---TSTQIAKVHSVSPAQ--VLLRWALQENF----LIIPK--SVTPERIVQNIA 309 (339)
Q Consensus 258 v~~~~~l~~---~l~~la~~~~~s~~~--~al~~~l~~~~----~~i~g--~~~~~~l~enl~ 309 (339)
.+..+.=.. .+..+-+ +.+..+ -+++.+.+.|+ ..|+| ..+.+.+++.++
T Consensus 300 ~v~iGiES~~~~~L~~~~K--~~t~~~~~~ai~~l~~~Gi~~~~~~I~G~P~et~e~~~~t~~ 360 (497)
T TIGR02026 300 HISLGTEAAAQATLDHFRK--GTTTSTNKEAIRLLRQHNILSEAQFITGFENETDETFEETYR 360 (497)
T ss_pred EEEEccccCCHHHHHHhcC--CCCHHHHHHHHHHHHHCCCcEEEEEEEECCCCCHHHHHHHHH
Confidence 555433322 3444433 334443 37788888874 25666 356777777765
No 89
>PF11242 DUF2774: Protein of unknown function (DUF2774); InterPro: IPR021404 This entry is represented by Bacteriophage T4, Gp24.3; it is a family of uncharacterised viral proteins.
Probab=38.99 E-value=44 Score=22.72 Aligned_cols=21 Identities=24% Similarity=0.382 Sum_probs=18.9
Q ss_pred HHHHHHHcCCCHHHHHHHHHh
Q psy15666 268 STQIAKVHSVSPAQVLLRWAL 288 (339)
Q Consensus 268 l~~la~~~~~s~~~~al~~~l 288 (339)
+.+||+.+|+++.++|..|+.
T Consensus 16 FveIAr~~~i~a~e~a~~w~~ 36 (63)
T PF11242_consen 16 FVEIARKIGITAKEVAKAWAE 36 (63)
T ss_pred HHHHHHHhCCCHHHHHHHHHH
Confidence 468999999999999999985
No 90
>PRK13796 GTPase YqeH; Provisional
Probab=38.61 E-value=3.4e+02 Score=25.56 Aligned_cols=83 Identities=22% Similarity=0.273 Sum_probs=56.7
Q ss_pred CCceEEEeccCCCCCC-CHHHHHHHHHHHHHhcCCCcccEEEeecCCCCCCCCCCCcccccHHHHHHHHHHhhCCCCCCc
Q psy15666 128 REDIFITSKLSPQYNG-NADQVKSLVAQTLKDLGTTYLDLFLIHWPGTFGVDSSSPQQISNRHTLWNALTELYNPNNGPL 206 (339)
Q Consensus 128 R~~~~i~tK~~~~~~~-~~~~~~~~~~~sL~~L~~d~iDl~~lH~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~G~i 206 (339)
+.-++|.+|.--.... ..+.+..-++...+.+|....|++++-.- ......++.+.+.+..+. +.+
T Consensus 97 kpviLViNK~DLl~~~~~~~~i~~~l~~~~k~~g~~~~~v~~vSAk-----------~g~gI~eL~~~I~~~~~~--~~v 163 (365)
T PRK13796 97 NPVLLVGNKADLLPKSVKKNKVKNWLRQEAKELGLRPVDVVLISAQ-----------KGHGIDELLEAIEKYREG--RDV 163 (365)
T ss_pred CCEEEEEEchhhCCCccCHHHHHHHHHHHHHhcCCCcCcEEEEECC-----------CCCCHHHHHHHHHHhcCC--CeE
Confidence 5668899998543211 12556666666677778655577766543 112378888888888777 899
Q ss_pred cEEEecCCCHHHHHHHH
Q psy15666 207 KSIGVSNYTAKHLVNLI 223 (339)
Q Consensus 207 r~iGvS~~~~~~l~~~~ 223 (339)
-.+|.+|.+...+...+
T Consensus 164 ~vvG~~NvGKSTLiN~L 180 (365)
T PRK13796 164 YVVGVTNVGKSTLINRI 180 (365)
T ss_pred EEEcCCCCcHHHHHHHH
Confidence 99999999986665444
No 91
>PLN02444 HMP-P synthase
Probab=38.60 E-value=51 Score=32.81 Aligned_cols=101 Identities=23% Similarity=0.218 Sum_probs=53.7
Q ss_pred CCCCCCchhHHHHHHhCCCeEEEeccCCCCCCCCCCCh-------------HHHHHHHHHcCCChhHHHHHHHHhhcchh
Q psy15666 4 HPHFLQPQELIDVCNQNKIALQAYASLGSTSSNPLIAD-------------STLAQIAKVHSVSPAQVLLRWALQENFCK 70 (339)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~i~~~~yspL~~g~~~~~~~~-------------~~l~~ia~~~~~s~aqv~l~w~l~~g~~~ 70 (339)
||+|..-+++++.|+++++.+ +||-|...+-+.| -+|.+.|.++|+.+ .+ -
T Consensus 357 NPlYe~FD~ileI~k~YDVtl----SLGDGLRPG~iaDA~D~AQ~~EL~tLGELtkrA~e~gVQV---MI---------E 420 (642)
T PLN02444 357 NFAYEHWDDILDICNQYDIAL----SIGDGLRPGSIYDANDTAQFAELLTQGELTRRAWEKDVQV---MN---------E 420 (642)
T ss_pred CchHHHHHHHHHHHHHhCeee----eccCCcCCCccccCCcHHHHHHHHHHHHHHHHHHHcCCeE---EE---------E
Confidence 677666678999999999987 4777754443432 23555555666521 10 0
Q ss_pred hhhccccccCCchHHHHHHHHhhh---ccCcccccccccccC-HHHHHHHHHhh
Q psy15666 71 FIKLYHKVHSVSPAQVLLRWALQE---NFCYRAIDTAQEYGN-EASIGRALKVL 120 (339)
Q Consensus 71 i~~s~~~~~~~~n~~~~~~~al~~---~~g~~~iDta~~y~~-E~~lG~al~~~ 120 (339)
=||=..-.++.+|.+......-.. +.|-=..|.|+.|.. -..||.|+..+
T Consensus 421 GPGHVPl~~I~~Nv~lqk~lC~~APfYvLGPLvTDIAPGYDHItsAIGaAiaa~ 474 (642)
T PLN02444 421 GPGHVPLHKIPENMQKQLEWCNEAPFYTLGPLTTDIAPGYDHITSAIGAANIGA 474 (642)
T ss_pred CCCcCcHHHHHHHHHHHHHhhCCCCceecCCcccccCCCchHHHHHHHHHHHHH
Confidence 011111122333333222222220 123334577888875 56688888754
No 92
>COG1149 MinD superfamily P-loop ATPase containing an inserted ferredoxin domain [Energy production and conversion]
Probab=37.58 E-value=60 Score=29.36 Aligned_cols=50 Identities=10% Similarity=0.187 Sum_probs=39.7
Q ss_pred CCHHHHHHHHHcCCCceeEeccccCCCCCCcHHHHHHHHhCCceEEEecchhH
Q psy15666 214 YTAKHLVNLIQNSKVVPAVNQVEFHPHFLQPQELIDVCNQNKIALQAYASLGS 266 (339)
Q Consensus 214 ~~~~~l~~~~~~~~~~~~~~q~~~~~~~~~~~~l~~~~~~~gi~v~~~~~l~~ 266 (339)
|+...+.++.+..+++..++-+.||+.. .++.++|++.|+.+++.-|+..
T Consensus 201 hD~kr~~el~~~f~ip~~iViNr~~~g~---s~ie~~~~e~gi~il~~IPyd~ 250 (284)
T COG1149 201 HDLKRALELVEHFGIPTGIVINRYNLGD---SEIEEYCEEEGIPILGEIPYDK 250 (284)
T ss_pred hHHHHHHHHHHHhCCceEEEEecCCCCc---hHHHHHHHHcCCCeeEECCcch
Confidence 4445566777778888888888886554 3799999999999999999874
No 93
>cd01966 Nitrogenase_NifN_1 Nitrogenase_nifN1: A subgroup of the NifN subunit of the NifEN complex: NifN forms an alpha2beta2 tetramer with NifE. NifN and nifE are structurally homologous to nitrogenase MoFe protein beta and alpha subunits respectively. NifEN participates in the synthesis of the iron-molybdenum cofactor (FeMoco) of the MoFe protein. NifB-co (an iron and sulfur containing precursor of the FeMoco) from NifB is transferred to the NifEN complex where it is further processed to FeMoco. The nifEN bound precursor of FeMoco has been identified as a molybdenum-free, iron- and sulfur- containing analog of FeMoco. It has been suggested that this nifEN bound precursor also acts as a cofactor precursor in nitrogenase systems which require a cofactor other than FeMoco: i.e. iron-vanadium cofactor (FeVco) or iron only cofactor (FeFeco).
Probab=37.28 E-value=3.9e+02 Score=25.76 Aligned_cols=119 Identities=13% Similarity=0.144 Sum_probs=68.0
Q ss_pred ccccccCHHHHHHHHHhhcccCCCCCCceEEEeccCCCCCCCHHHHHHHHHHHHHhcC-CCcccEEEeecCCCCCCCCCC
Q psy15666 103 TAQEYGNEASIGRALKVLLPKFNLKREDIFITSKLSPQYNGNADQVKSLVAQTLKDLG-TTYLDLFLIHWPGTFGVDSSS 181 (339)
Q Consensus 103 ta~~y~~E~~lG~al~~~~~~~~~~R~~~~i~tK~~~~~~~~~~~~~~~~~~sL~~L~-~d~iDl~~lH~~~~~~~~~~~ 181 (339)
..-.||.|+.+-++|++....+. .+=++|.|-+.+.-.+ +++...+++.-++.. ...+.++.+|.|++.+.
T Consensus 59 ~d~VfGg~~~L~~~i~~~~~~~~--p~~I~V~ttc~~eiIG--dDi~~v~~~~~~~~p~~~~~~vi~v~t~gf~g~---- 130 (417)
T cd01966 59 VSTILGGGENLEEALDTLAERAK--PKVIGLLSTGLTETRG--EDIAGALKQFRAEHPELADVPVVYVSTPDFEGS---- 130 (417)
T ss_pred CcEEECCHHHHHHHHHHHHHhcC--CCEEEEECCCcccccc--cCHHHHHHHHHhhccccCCCeEEEecCCCCCCc----
Confidence 33478988888888887754432 3447777776554333 235555554434421 01467888999866531
Q ss_pred CcccccHHHHHHHHHH-hhC------CCCCCccEEEecCC---CHHHHHHHHHcCCCcee
Q psy15666 182 PQQISNRHTLWNALTE-LYN------PNNGPLKSIGVSNY---TAKHLVNLIQNSKVVPA 231 (339)
Q Consensus 182 ~~~~~~~~~~~~~l~~-l~~------~~~G~ir~iGvS~~---~~~~l~~~~~~~~~~~~ 231 (339)
.......++++|-+ +.. .++++|--||-++. +.+.+.++++..++++.
T Consensus 131 --~~~G~~~a~~al~~~l~~~~~~~~~~~~~VNiig~~~~~~~D~~eik~lL~~~Gl~v~ 188 (417)
T cd01966 131 --LEDGWAAAVEAIIEALVEPGSRTVTDPRQVNLLPGAHLTPGDVEELKDIIEAFGLEPI 188 (417)
T ss_pred --HHHHHHHHHHHHHHHhcccccccCCCCCcEEEECCCCCCHHHHHHHHHHHHHcCCceE
Confidence 11224444444332 211 22378999975544 33677788887777653
No 94
>TIGR02127 pyrF_sub2 orotidine 5'-phosphate decarboxylase, subfamily 2. This model represents orotidine 5'-monophosphate decarboxylase, the PyrF protein of pyrimidine nucleotide biosynthesis. See TIGR01740 for a related but distinct subfamily of the same enzyme.
Probab=37.03 E-value=3.1e+02 Score=24.60 Aligned_cols=149 Identities=7% Similarity=0.020 Sum_probs=77.2
Q ss_pred HHHHHHHHHHHHhcCCCcccEEEeecCCCCCCCCCCCcccccHHHHHHHHHHhhCCCCCCccEEEecCCCHH-HH----H
Q psy15666 146 DQVKSLVAQTLKDLGTTYLDLFLIHWPGTFGVDSSSPQQISNRHTLWNALTELYNPNNGPLKSIGVSNYTAK-HL----V 220 (339)
Q Consensus 146 ~~~~~~~~~sL~~L~~d~iDl~~lH~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~G~ir~iGvS~~~~~-~l----~ 220 (339)
+.+++-+.+-++.++ +++..|=++..-+. ...+..+.++.+.++.+++. |..-..=+=-++.. .. +
T Consensus 37 ~~~~~f~~~ii~~l~-~~v~~vK~g~~lf~------~~G~~gi~~l~~~~~~~~~~--g~~VilD~K~~DIpnTv~~~a~ 107 (261)
T TIGR02127 37 AGLQAFCLRIIDATA-EYAAVVKPQVAFFE------RFGSEGFKALEEVIAHARSL--GLPVLADVKRGDIGSTASAYAK 107 (261)
T ss_pred HHHHHHHHHHHHhcC-CcceEEecCHHHHH------hcCHHHHHHHHHHHHHHHHC--CCeEEEEeeccChHHHHHHHHH
Confidence 455666777888886 78877766654111 00111234455555666666 65433333334432 22 2
Q ss_pred HHHHcCCCceeEeccccCCCCCCc--HHHHHHHHhC--CceEEEecch-hH-HHHHHHHHcCCCHHHHHHHHHhhC----
Q psy15666 221 NLIQNSKVVPAVNQVEFHPHFLQP--QELIDVCNQN--KIALQAYASL-GS-TSTQIAKVHSVSPAQVLLRWALQE---- 290 (339)
Q Consensus 221 ~~~~~~~~~~~~~q~~~~~~~~~~--~~l~~~~~~~--gi~v~~~~~l-~~-~l~~la~~~~~s~~~~al~~~l~~---- 290 (339)
.+.+..++ ..+..|++.... ...++.++++ ++.|++-.+. +. .++.+....|.+..+..++++..-
T Consensus 108 a~~~~~g~----D~vTvh~~~G~d~l~~~~~~~~~~~~~v~VlvlTSnp~~~~lq~~~~~~~~~~~~~V~~~a~~~~~~~ 183 (261)
T TIGR02127 108 AWLGHLHA----DALTVSPYLGLDSLRPFLEYARANGAGIFVLVKTSNPGGADLQDLRVSDGRTVYEEVAELAGELNESP 183 (261)
T ss_pred HHHhhcCC----CEEEECCcCCHHHHHHHHHHHhhcCCEEEEEEeCCCCCHHHHhhhhccCCCCHHHHHHHHHHHhcccc
Confidence 22212222 333445544441 4455555543 5666665555 33 455543334456776666665543
Q ss_pred ---CcE-EecCCCCHHHHHHh
Q psy15666 291 ---NFL-IIPKSVTPERIVQN 307 (339)
Q Consensus 291 ---~~~-~i~g~~~~~~l~en 307 (339)
|.. +++|+++++++.+.
T Consensus 184 ~~~g~~GvV~gAT~p~e~~~i 204 (261)
T TIGR02127 184 GDCSSVGAVVGATSPGDLLRL 204 (261)
T ss_pred CcCCceEEEECCCCHHHHHHH
Confidence 233 88899998766554
No 95
>TIGR00289 conserved hypothetical protein TIGR00289. Homologous proteins related to MJ0570 of Methanococcus jannaschii include both the apparent orthologs found by this model above the trusted cutoff, the much longer protein YLR143W from Saccharomyces cerevisiae, and second homologous proteins from Archaeoglobus fulgidus and Pyrococcus horikoshii that appear to represent a second orthologous group.
Probab=36.99 E-value=2e+02 Score=25.19 Aligned_cols=81 Identities=11% Similarity=0.179 Sum_probs=49.9
Q ss_pred HHHHHHHHhCCceEEEecchhH-----HHHHHHHHcC---------CCHHHHHHHHHhhCCcE-EecCCCCHHHHHHhhc
Q psy15666 245 QELIDVCNQNKIALQAYASLGS-----TSTQIAKVHS---------VSPAQVLLRWALQENFL-IIPKSVTPERIVQNIA 309 (339)
Q Consensus 245 ~~l~~~~~~~gi~v~~~~~l~~-----~l~~la~~~~---------~s~~~~al~~~l~~~~~-~i~g~~~~~~l~enl~ 309 (339)
.++....++.|+..++++.+.. .+.++|++.| .++.++ +.++ ..|+- +|++++ ...|.+..-
T Consensus 75 ~~l~~~l~~~gv~~vv~GdI~s~~qr~~~e~vc~~~gl~~~~PLW~~d~~~l-~e~i-~~Gf~aiIv~v~-~~gL~~~~L 151 (222)
T TIGR00289 75 EDLAGQLGELDVEALCIGAIESNYQKSRIDKVCRELGLKSIAPLWHADPEKL-MYEV-AEKFEVIIVSVS-AMGLDESWL 151 (222)
T ss_pred HHHHHHHHHcCCCEEEECccccHHHHHHHHHHHHHcCCEEeccccCCCHHHH-HHHH-HcCCeEEEEEEc-cCCCChHHc
Confidence 4566666777777777776654 6667777765 366665 4654 77864 444443 233433321
Q ss_pred CCCCCCHHHHHHHhcCCCCC
Q psy15666 310 LDFELSPEEVKAIENIPNKQ 329 (339)
Q Consensus 310 ~~~~L~~~~~~~l~~~~~~~ 329 (339)
.-.|+.+.++.|.++.+..
T Consensus 152 -Gr~id~~~~~~L~~l~~~~ 170 (222)
T TIGR00289 152 -GRRIDKECIDDLKRLNEKY 170 (222)
T ss_pred -CCccCHHHHHHHHHHHhhc
Confidence 3468888888888766543
No 96
>cd04743 NPD_PKS 2-Nitropropane dioxygenase (NPD)-like domain, associated with polyketide synthases (PKS). NPD is part of the nitroalkaneoxidizing enzyme family, that catalyzes oxidative denitrification of nitroalkanes to their corresponding carbonyl compounds and nitrites. NDPs are members of the NAD(P)H-dependent flavin oxidoreductase family that reduce a range of alternative electron acceptors. Most use FAD/FMN as a cofactor and NAD(P)H as electron donor. Some contain 4Fe-4S cluster to transfer electron from FAD to FMN.
Probab=36.53 E-value=2.5e+02 Score=26.16 Aligned_cols=58 Identities=16% Similarity=0.130 Sum_probs=36.3
Q ss_pred CCccEEEecCCCHHHHHHHHHcC-----CCceeEeccccCCCCCCcHHHHHHHHhCCceEEEec
Q psy15666 204 GPLKSIGVSNYTAKHLVNLIQNS-----KVVPAVNQVEFHPHFLQPQELIDVCNQNKIALQAYA 262 (339)
Q Consensus 204 G~ir~iGvS~~~~~~l~~~~~~~-----~~~~~~~q~~~~~~~~~~~~l~~~~~~~gi~v~~~~ 262 (339)
|=+..||....+++++++.++.. .-++-++-+.+... ....+.++.|.+.++.++..+
T Consensus 27 GgLG~la~~~~~~e~l~~~i~~~~~l~tdkPfGVnl~~~~~~-~~~~~~l~vi~e~~v~~V~~~ 89 (320)
T cd04743 27 GGLPFIALALMRGEQVKALLEETAELLGDKPWGVGILGFVDT-ELRAAQLAVVRAIKPTFALIA 89 (320)
T ss_pred CccccCCCCCCCHHHHHHHHHHHHHhccCCCeEEEEeccCCC-cchHHHHHHHHhcCCcEEEEc
Confidence 77788888888888877666433 12334443333211 112578888889998887755
No 97
>PF03102 NeuB: NeuB family; InterPro: IPR013132 NeuB is the prokaryotic N-acetylneuraminic acid synthase (Neu5Ac). It catalyses the direct formation of Neu5Ac (the most common sialic acid) by condensation of phosphoenolpyruvate (PEP) and N-acetylmannosamine (ManNAc). This reaction has only been observed in prokaryotes; eukaryotes synthesise the 9-phosphate form, Neu5Ac-9-P, and utilise ManNAc-6-P instead of ManNAc. Such eukaryotic enzymes are not present in this family []. This family also contains SpsE spore coat polysaccharide biosynthesis proteins.; GO: 0016051 carbohydrate biosynthetic process; PDB: 3G8R_B 1XUU_A 1XUZ_A 3CM4_A 2ZDR_A 1VLI_A 2WQP_A.
Probab=36.26 E-value=1.6e+02 Score=26.08 Aligned_cols=65 Identities=17% Similarity=0.272 Sum_probs=38.1
Q ss_pred HHHHHHHHhCCceEEEecchhHHHHHHHHHcCCC--------H-HHHHHHHHhhCC--cEEecCCCCHHHHHHhhcC
Q psy15666 245 QELIDVCNQNKIALQAYASLGSTSTQIAKVHSVS--------P-AQVLLRWALQEN--FLIIPKSVTPERIVQNIAL 310 (339)
Q Consensus 245 ~~l~~~~~~~gi~v~~~~~l~~~l~~la~~~~~s--------~-~~~al~~~l~~~--~~~i~g~~~~~~l~enl~~ 310 (339)
.++.++|+++||.+++ +|+.-.-.++..++++. . ---.|+.+.+.| ++.=.|+++.++|++.++.
T Consensus 59 ~~L~~~~~~~gi~f~s-tpfd~~s~d~l~~~~~~~~KIaS~dl~n~~lL~~~A~tgkPvIlSTG~stl~EI~~Av~~ 134 (241)
T PF03102_consen 59 KELFEYCKELGIDFFS-TPFDEESVDFLEELGVPAYKIASGDLTNLPLLEYIAKTGKPVILSTGMSTLEEIERAVEV 134 (241)
T ss_dssp HHHHHHHHHTT-EEEE-EE-SHHHHHHHHHHT-SEEEE-GGGTT-HHHHHHHHTT-S-EEEE-TT--HHHHHHHHHH
T ss_pred HHHHHHHHHcCCEEEE-CCCCHHHHHHHHHcCCCEEEeccccccCHHHHHHHHHhCCcEEEECCCCCHHHHHHHHHH
Confidence 6799999999998876 66665333444555431 1 112567776664 5556699999999987753
No 98
>PRK00087 4-hydroxy-3-methylbut-2-enyl diphosphate reductase/S1 RNA-binding domain protein; Reviewed
Probab=36.09 E-value=1.8e+02 Score=29.96 Aligned_cols=104 Identities=10% Similarity=0.169 Sum_probs=63.9
Q ss_pred CCccEEEecCCCHHHHHHHHHcCCCceeEeccccCCCCCC----cHHHHHHHHhCCceEEEecchhH---HHHHHHHHcC
Q psy15666 204 GPLKSIGVSNYTAKHLVNLIQNSKVVPAVNQVEFHPHFLQ----PQELIDVCNQNKIALQAYASLGS---TSTQIAKVHS 276 (339)
Q Consensus 204 G~ir~iGvS~~~~~~l~~~~~~~~~~~~~~q~~~~~~~~~----~~~l~~~~~~~gi~v~~~~~l~~---~l~~la~~~~ 276 (339)
.++-.+-=++.+.+.+.++.+...-++.-+.+ ++-.+.. ...+.++|++-++-++.-++=.+ .|.++|++.|
T Consensus 154 ~~~~~~~QTT~~~~~~~~~~~~l~~~~~~~~~-~~tiC~at~~Rq~a~~~la~~~d~~~vvGg~~SsNt~~L~~i~~~~~ 232 (647)
T PRK00087 154 KKICVVSQTTEKQENFEKVLKELKKKGKEVKV-FNTICNATEVRQEAAEKLAKKVDVMIVVGGKNSSNTTKLYEICKSNC 232 (647)
T ss_pred CCEEEEEcCCCcHHHHHHHHHHHHHhCCCccc-CCCcchhhhhHHHHHHHHHhhCCEEEEECCCCCccHHHHHHHHHHHC
Confidence 45555555566666655554433111111111 2322222 15688888888877766444333 8999999887
Q ss_pred C------CHHHHHHHHHhhCCcE-EecCCCCHHHHHHhh
Q psy15666 277 V------SPAQVLLRWALQENFL-IIPKSVTPERIVQNI 308 (339)
Q Consensus 277 ~------s~~~~al~~~l~~~~~-~i~g~~~~~~l~enl 308 (339)
. ++.++.-.|+-....+ +..|+|+|+.+-+.+
T Consensus 233 ~~~~~ie~~~el~~~~~~~~~~vgitagaStP~~~i~~v 271 (647)
T PRK00087 233 TNTIHIENAGELPEEWFKGVKIIGVTAGASTPDWIIEEV 271 (647)
T ss_pred CCEEEECChHHCCHHHhCCCCEEEEEeccCCCHHHHHHH
Confidence 4 7888888998877666 777999999765554
No 99
>COG2089 SpsE Sialic acid synthase [Cell envelope biogenesis, outer membrane]
Probab=35.73 E-value=83 Score=29.21 Aligned_cols=65 Identities=12% Similarity=0.217 Sum_probs=47.2
Q ss_pred HHHHHHHHhCCceEEEecchhHHHHHHHHHcCCCHH---------HHHHHHHhhC--CcEEecCCCCHHHHHHhhcC
Q psy15666 245 QELIDVCNQNKIALQAYASLGSTSTQIAKVHSVSPA---------QVLLRWALQE--NFLIIPKSVTPERIVQNIAL 310 (339)
Q Consensus 245 ~~l~~~~~~~gi~v~~~~~l~~~l~~la~~~~~s~~---------~~al~~~l~~--~~~~i~g~~~~~~l~enl~~ 310 (339)
.++.++|++.||.++. |||...-..+.+.++.+.- -=.|.|+.+. |.+.-.|+.+.+.+++.++.
T Consensus 93 ~~Lke~a~~~Gi~~~S-SPfd~~svd~l~~~~~~ayKIaS~E~~~~plik~iA~~~kPiIlSTGma~~~ei~~av~~ 168 (347)
T COG2089 93 AQLKEYARKRGIIFFS-SPFDLTAVDLLESLNPPAYKIASGEINDLPLIKYIAKKGKPIILSTGMATIEEIEEAVAI 168 (347)
T ss_pred HHHHHHHHHcCeEEEe-cCCCHHHHHHHHhcCCCeEEecCccccChHHHHHHHhcCCCEEEEcccccHHHHHHHHHH
Confidence 6899999999998875 8998755566666654211 1146777665 56667799999999998864
No 100
>cd07939 DRE_TIM_NifV Streptomyces rubellomurinus FrbC and related proteins, catalytic TIM barrel domain. FrbC (NifV) of Streptomyces rubellomurinus catalyzes the condensation of acetyl-CoA and alpha-ketoglutarate to form homocitrate and CoA, a reaction similar to one catalyzed by homocitrate synthase. The gene encoding FrbC is one of several genes required for the biosynthesis of FR900098, a potent antimalarial antibiotic. This protein is also required for assembly of the nitrogenase MoFe complex but its exact role is unknown. This family also includes the NifV proteins of Heliobacterium chlorum and Gluconacetobacter diazotrophicus, which appear to be orthologous to FrbC. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarbox
Probab=35.65 E-value=3.2e+02 Score=24.26 Aligned_cols=138 Identities=12% Similarity=0.104 Sum_probs=75.3
Q ss_pred HHHHHHHHHHHHhcCCCcccEEEeecCCCCCCCCCCCcccccHHHHHHHHHHhhCCCCCCccEEEecCCCHHHHHHHHHc
Q psy15666 146 DQVKSLVAQTLKDLGTTYLDLFLIHWPGTFGVDSSSPQQISNRHTLWNALTELYNPNNGPLKSIGVSNYTAKHLVNLIQN 225 (339)
Q Consensus 146 ~~~~~~~~~sL~~L~~d~iDl~~lH~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~G~ir~iGvS~~~~~~l~~~~~~ 225 (339)
..-+..+-+.|.++|+++|++-+ |. .. +.-++.++.+.+.. ..++..+++..+.+.++.+.+.
T Consensus 19 ~~~k~~i~~~L~~~Gv~~iE~g~---p~----------~~---~~~~e~~~~l~~~~-~~~~~~~~~r~~~~~v~~a~~~ 81 (259)
T cd07939 19 REEKLAIARALDEAGVDEIEVGI---PA----------MG---EEEREAIRAIVALG-LPARLIVWCRAVKEDIEAALRC 81 (259)
T ss_pred HHHHHHHHHHHHHcCCCEEEEec---CC----------CC---HHHHHHHHHHHhcC-CCCEEEEeccCCHHHHHHHHhC
Confidence 34556677779999999999852 31 11 12244555555531 3477777777778888887765
Q ss_pred CCCceeEeccccCCCC------CC-------cHHHHHHHHhCCceEEEecchhHHHHHHHHHcCCCHHHHH--HHHHhhC
Q psy15666 226 SKVVPAVNQVEFHPHF------LQ-------PQELIDVCNQNKIALQAYASLGSTSTQIAKVHSVSPAQVL--LRWALQE 290 (339)
Q Consensus 226 ~~~~~~~~q~~~~~~~------~~-------~~~l~~~~~~~gi~v~~~~~l~~~l~~la~~~~~s~~~~a--l~~~l~~ 290 (339)
. ++...+-++.+..+ .. -...+.+|+++|+.+....+... ..++..+. .+-+.+.
T Consensus 82 g-~~~i~i~~~~s~~~~~~~~~~~~~~~~~~~~~~i~~a~~~G~~v~~~~~~~~---------~~~~~~~~~~~~~~~~~ 151 (259)
T cd07939 82 G-VTAVHISIPVSDIHLAHKLGKDRAWVLDQLRRLVGRAKDRGLFVSVGAEDAS---------RADPDFLIEFAEVAQEA 151 (259)
T ss_pred C-cCEEEEEEecCHHHHHHHhCCCHHHHHHHHHHHHHHHHHCCCeEEEeeccCC---------CCCHHHHHHHHHHHHHC
Confidence 3 32222222222221 11 13678899999987653333321 11222211 1112233
Q ss_pred Cc--EEec---CCCCHHHHHHhhcC
Q psy15666 291 NF--LIIP---KSVTPERIVQNIAL 310 (339)
Q Consensus 291 ~~--~~i~---g~~~~~~l~enl~~ 310 (339)
|. +.|+ |.-+|+++.+.+..
T Consensus 152 G~~~i~l~DT~G~~~P~~v~~lv~~ 176 (259)
T cd07939 152 GADRLRFADTVGILDPFTTYELIRR 176 (259)
T ss_pred CCCEEEeCCCCCCCCHHHHHHHHHH
Confidence 32 3443 78888888877764
No 101
>PLN02363 phosphoribosylanthranilate isomerase
Probab=35.21 E-value=1.4e+02 Score=26.83 Aligned_cols=66 Identities=15% Similarity=0.255 Sum_probs=41.2
Q ss_pred HhcCCCcccEEEeecCCCCCCCCCCCcccccHHHHHHHHHHhhCCCCCCccEEEec-CCCHHHHHHHHHcCCCceeEecc
Q psy15666 157 KDLGTTYLDLFLIHWPGTFGVDSSSPQQISNRHTLWNALTELYNPNNGPLKSIGVS-NYTAKHLVNLIQNSKVVPAVNQV 235 (339)
Q Consensus 157 ~~L~~d~iDl~~lH~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~G~ir~iGvS-~~~~~~l~~~~~~~~~~~~~~q~ 235 (339)
.++|.||+-+.+.... +... ..+..+.+.+.... ..++.+||. |-+++.+.++++..+ ++++|+
T Consensus 64 ~~~GaD~iGfIf~~~S---------pR~V--s~e~a~~I~~~l~~--~~~~~VgVfv~~~~~~I~~~~~~~~--ld~VQL 128 (256)
T PLN02363 64 VEAGADFIGMILWPKS---------KRSI--SLSVAKEISQVARE--GGAKPVGVFVDDDANTILRAADSSD--LELVQL 128 (256)
T ss_pred HHcCCCEEEEecCCCC---------CCcC--CHHHHHHHHHhccc--cCccEEEEEeCCCHHHHHHHHHhcC--CCEEEE
Confidence 3589999998643311 1111 23344444444433 347789996 788888989888764 478888
Q ss_pred cc
Q psy15666 236 EF 237 (339)
Q Consensus 236 ~~ 237 (339)
.-
T Consensus 129 HG 130 (256)
T PLN02363 129 HG 130 (256)
T ss_pred CC
Confidence 64
No 102
>PF01175 Urocanase: Urocanase; InterPro: IPR023637 Urocanase [] (also known as imidazolonepropionate hydrolase or urocanate hydratase) is the enzyme that catalyzes the second step in the degradation of histidine, the hydration of urocanate into imidazolonepropionate. urocanate + H2O = 4,5-dihydro-4-oxo-5-imidazolepropanoate Urocanase is found in some bacteria (gene hutU), in the liver of many vertebrates and has also been found in the plant Trifolium repens (white clover). Urocanase is a protein of about 60 Kd, it binds tightly to NAD+ and uses it as an electrophil cofactor. A conserved cysteine has been found to be important for the catalytic mechanism and could be involved in the binding of the NAD+. This enzyme is a symmetric homodimer with tightly bound NAD+ cofactors. Each subunit consists of a typical NAD-binding domain inserted into a larger core domain that forms the dimer interface []. This entry represents the Urocanase subunit structural domain.; GO: 0016153 urocanate hydratase activity; PDB: 2V7G_A 1UWK_A 1UWL_B 1W1U_B 2FKN_C 1X87_B.
Probab=34.56 E-value=1e+02 Score=30.45 Aligned_cols=108 Identities=16% Similarity=0.096 Sum_probs=63.5
Q ss_pred HHHHHHHHhhcccCCCCCCceEEEeccCCCCCCCH--HHH--------HHHHHHHHHhcCCCcccEEEeecCCCCCCCCC
Q psy15666 111 ASIGRALKVLLPKFNLKREDIFITSKLSPQYNGNA--DQV--------KSLVAQTLKDLGTTYLDLFLIHWPGTFGVDSS 180 (339)
Q Consensus 111 ~~lG~al~~~~~~~~~~R~~~~i~tK~~~~~~~~~--~~~--------~~~~~~sL~~L~~d~iDl~~lH~~~~~~~~~~ 180 (339)
+.+..+-+..+. +--+.++|+++-++.-....| ..+ +-.-...-+|+.+.|+|.+.
T Consensus 141 eT~~~aark~~g--~~L~Gk~~lTaGLGGMgGAQplA~~m~g~v~l~vEvd~~ri~kR~~~g~ld~~~------------ 206 (546)
T PF01175_consen 141 ETFLNAARKHFG--GDLAGKLFLTAGLGGMGGAQPLAATMAGGVGLIVEVDPSRIEKRLEQGYLDEVT------------ 206 (546)
T ss_dssp HHHHHHHHHHST--TS-TT-EEEEE--STTCCHHHHHHHHTT-EEEEEES-HHHHHHHHHTTSSSEEE------------
T ss_pred HHHHHHHHHhcC--CCCcceEEEEecccccccchHHHHHhcCceEEEEEECHHHHHHHHhCCCeeEEc------------
Confidence 344555555544 224788999999886521110 000 11123445788889999632
Q ss_pred CCcccccHHHHHHHHHHhhCCCCCCccEEEecCCCHHHHHHHHHcC-CCceeEeccccCC
Q psy15666 181 SPQQISNRHTLWNALTELYNPNNGPLKSIGVSNYTAKHLVNLIQNS-KVVPAVNQVEFHP 239 (339)
Q Consensus 181 ~~~~~~~~~~~~~~l~~l~~~~~G~ir~iGvS~~~~~~l~~~~~~~-~~~~~~~q~~~~~ 239 (339)
.+++++++..++.+++ |+..+||+-..-.+.++++++.. .++...-|.+.|.
T Consensus 207 -----~~ldea~~~~~ea~~~--~~~~SIg~~GN~ad~~~~l~~~~i~pDl~tDQTS~Hd 259 (546)
T PF01175_consen 207 -----DDLDEALARAKEARAK--KEPLSIGLLGNAADLWEELVERGIIPDLVTDQTSAHD 259 (546)
T ss_dssp -----SSHHHHHHHHHHHHHT--T--EEEEEES-HHHHHHHHHHTT---SEE---SSTT-
T ss_pred -----CCHHHHHHHHHHhhcc--CCeeEEEEeccHHHHHHHHHHcCCCCCcccCCCcccc
Confidence 1288999999999999 99999999999999999999875 3344566777653
No 103
>PRK13352 thiamine biosynthesis protein ThiC; Provisional
Probab=34.19 E-value=1.4e+02 Score=28.79 Aligned_cols=32 Identities=22% Similarity=0.367 Sum_probs=24.8
Q ss_pred CCCCCCchhHHHHHHhCCCeEEEeccCCCCCCCCCC
Q psy15666 4 HPHFLQPQELIDVCNQNKIALQAYASLGSTSSNPLI 39 (339)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~i~~~~yspL~~g~~~~~~ 39 (339)
||||.+-++|++.|++|++.+ +||-|..++-+
T Consensus 202 NPlye~fD~lLeI~~~yDVtl----SLGDglRPG~i 233 (431)
T PRK13352 202 NPLYEHFDYLLEILKEYDVTL----SLGDGLRPGCI 233 (431)
T ss_pred CchHHHHHHHHHHHHHhCeee----eccCCcCCCcc
Confidence 787766689999999999987 57777554444
No 104
>COG0282 ackA Acetate kinase [Energy production and conversion]
Probab=33.90 E-value=1.6e+02 Score=28.06 Aligned_cols=109 Identities=11% Similarity=0.071 Sum_probs=68.1
Q ss_pred HHhhCCCCCCccEEEecCCCHHHHH-HHHHcCCCc-eeEeccccCCCCCCcHHHHHHHHhCCceE---EEecchhH----
Q psy15666 196 TELYNPNNGPLKSIGVSNYTAKHLV-NLIQNSKVV-PAVNQVEFHPHFLQPQELIDVCNQNKIAL---QAYASLGS---- 266 (339)
Q Consensus 196 ~~l~~~~~G~ir~iGvS~~~~~~l~-~~~~~~~~~-~~~~q~~~~~~~~~~~~l~~~~~~~gi~v---~~~~~l~~---- 266 (339)
.+++++ =.||.+|+=..+..-+. ++.+..+-+ -+.+.+..|+.+.. .+ -|-++|..| ++++||.+
T Consensus 164 ~~~y~~--~gIRrYGFHGtSh~YVs~~aa~~L~k~~~~l~~I~~HLGNGA--Si--cAiknGkSvDTSMGfTPLeGl~MG 237 (396)
T COG0282 164 YELYEK--YGIRRYGFHGTSHKYVSQRAAEILGKPLEDLNLITCHLGNGA--SI--CAIKNGKSVDTSMGFTPLEGLMMG 237 (396)
T ss_pred HHHHHh--cCceecccCccchHHHHHHHHHHhCCCccccCEEEEEecCch--hh--hhhhCCeeeccCCCCCcccceecc
Confidence 345666 78999999887754333 222222211 14455555555433 11 234666654 67889987
Q ss_pred ---------HHHHHHHHcCCCHHHHHHHHHhhCCcEEecCCC-CHHHHHHhhcC
Q psy15666 267 ---------TSTQIAKVHSVSPAQVLLRWALQENFLIIPKSV-TPERIVQNIAL 310 (339)
Q Consensus 267 ---------~l~~la~~~~~s~~~~al~~~l~~~~~~i~g~~-~~~~l~enl~~ 310 (339)
.+.-++++.|.|..++.-----..|.-=+.|.+ ....++++.+-
T Consensus 238 TRsGdiDP~ii~~l~~~~~~s~~~i~~~LNkkSGllGlSg~ssD~R~l~~~~~~ 291 (396)
T COG0282 238 TRSGDIDPGIILYLMEQEGMSAEEIDTLLNKKSGLLGLSGLSSDMRDLEEAAAE 291 (396)
T ss_pred CCCCCCChHHHHHHHHhcCCCHHHHHHHHhhhccccccccccchHHHHHHHhcc
Confidence 778899999999999765444444666777844 47888777654
No 105
>CHL00076 chlB photochlorophyllide reductase subunit B
Probab=33.85 E-value=4.9e+02 Score=25.92 Aligned_cols=163 Identities=12% Similarity=0.070 Sum_probs=83.6
Q ss_pred ccCHHHHHHHHHhhcccCCCCCCc-eEEEeccCCCCCCCHHHHHHHHHHHHHhcCCCcccEEEeecCCCCCCCCCCCccc
Q psy15666 107 YGNEASIGRALKVLLPKFNLKRED-IFITSKLSPQYNGNADQVKSLVAQTLKDLGTTYLDLFLIHWPGTFGVDSSSPQQI 185 (339)
Q Consensus 107 y~~E~~lG~al~~~~~~~~~~R~~-~~i~tK~~~~~~~~~~~~~~~~~~sL~~L~~d~iDl~~lH~~~~~~~~~~~~~~~ 185 (339)
+|.++.+-++|++..... +.+ ++|.|-+.+.-.+ +++..-+++.-+++ -++++.+|.|++.+... ....
T Consensus 67 ~Gg~~kL~~~I~~~~~~~---~P~~I~V~tTC~~eiIG--DDi~~v~~~~~~~~---~~pVi~v~t~~f~g~~~--~g~~ 136 (513)
T CHL00076 67 RGSQEKVVDNITRKDKEE---RPDLIVLTPTCTSSILQ--EDLQNFVDRASIES---DSDVILADVNHYRVNEL--QAAD 136 (513)
T ss_pred cchHHHHHHHHHHHHHhc---CCCEEEECCCCchhhhh--cCHHHHHHHhhccc---CCCEEEeCCCCCcccHH--HHHH
Confidence 466666666676543332 344 5555544332111 22333333332233 36899999996542110 0000
Q ss_pred ccHHHHHHHHHH-h--------hCCCCCCccEEEecC------CCHHHHHHHHHcCCCceeEeccc--------------
Q psy15666 186 SNRHTLWNALTE-L--------YNPNNGPLKSIGVSN------YTAKHLVNLIQNSKVVPAVNQVE-------------- 236 (339)
Q Consensus 186 ~~~~~~~~~l~~-l--------~~~~~G~ir~iGvS~------~~~~~l~~~~~~~~~~~~~~q~~-------------- 236 (339)
..+..+++.+.. . ....+++|--||.++ .+...+.++++..++.+..+--.
T Consensus 137 ~~l~~lv~~~~~~~~~~~~~~~~~~~~~~VNIIG~~~l~f~~~~Dl~eikrLL~~~Gi~vn~v~~~g~sl~di~~~~~A~ 216 (513)
T CHL00076 137 RTLEQIVRFYLEKARKQGTLDQSKTDKPSVNIIGIFTLGFHNQHDCRELKRLLQDLGIEINQIIPEGGSVEDLKNLPKAW 216 (513)
T ss_pred HHHHHHHHHHhhcccccccccccCCCCCcEEEEecCCCCCCCcchHHHHHHHHHHCCCeEEEEECCCCCHHHHHhcccCc
Confidence 012333333321 0 001237899999774 34577888898877654321111
Q ss_pred cCCCCCC--cHHHHHHHH-hCCceEEEecchhH-----HHHHHHHHcCCCH
Q psy15666 237 FHPHFLQ--PQELIDVCN-QNKIALQAYASLGS-----TSTQIAKVHSVSP 279 (339)
Q Consensus 237 ~~~~~~~--~~~l~~~~~-~~gi~v~~~~~l~~-----~l~~la~~~~~s~ 279 (339)
+|+.... ...+-++.+ +.|++++...|+|- -++++++..|...
T Consensus 217 ~NIvl~~~~g~~~A~~Le~~fgiP~i~~~PiGi~~T~~fLr~la~~lg~~~ 267 (513)
T CHL00076 217 FNIVPYREVGLMTAKYLEKEFGMPYISTTPMGIVDTAECIRQIQKILNKLA 267 (513)
T ss_pred EEEEechhhhHHHHHHHHHHhCCCeEeeccCCHHHHHHHHHHHHHHhCCCc
Confidence 1111111 123344443 67998888788875 7888888888653
No 106
>TIGR01182 eda Entner-Doudoroff aldolase. 2-deydro-3-deoxyphosphogluconate aldolase (EC 4.1.2.14) is an enzyme of the Entner-Doudoroff pathway. This aldolase has another function, 4-hydroxy-2-oxoglutarate aldolase (EC 4.1.3.16) shown experimentally in Escherichia coli and Pseudomonas putida
Probab=33.27 E-value=3.2e+02 Score=23.57 Aligned_cols=119 Identities=17% Similarity=0.127 Sum_probs=72.5
Q ss_pred HHHHHHHHHHhhCCCCCCccEEEecCCCHHHHH---HHHHcCCCceeEeccccCCCCCCcHHHHHHHHhCCceEEEecch
Q psy15666 188 RHTLWNALTELYNPNNGPLKSIGVSNYTAKHLV---NLIQNSKVVPAVNQVEFHPHFLQPQELIDVCNQNKIALQAYASL 264 (339)
Q Consensus 188 ~~~~~~~l~~l~~~~~G~ir~iGvS~~~~~~l~---~~~~~~~~~~~~~q~~~~~~~~~~~~l~~~~~~~gi~v~~~~~l 264 (339)
.++..+..+.|.+. -++.+=|+..++..++ ++.+.. |. +......--..+-.+.+.+.|-.++. ||-
T Consensus 19 ~e~a~~~~~al~~~---Gi~~iEit~~t~~a~~~i~~l~~~~---~~---~~vGAGTVl~~~~a~~a~~aGA~Fiv-sP~ 88 (204)
T TIGR01182 19 VDDALPLAKALIEG---GLRVLEVTLRTPVALDAIRLLRKEV---PD---ALIGAGTVLNPEQLRQAVDAGAQFIV-SPG 88 (204)
T ss_pred HHHHHHHHHHHHHc---CCCEEEEeCCCccHHHHHHHHHHHC---CC---CEEEEEeCCCHHHHHHHHHcCCCEEE-CCC
Confidence 66777777888765 5799999987765543 443322 11 11111111125567778888888874 443
Q ss_pred hHHHHHHHHHcCCCHHHHHHHHHhhCCcEEecCCCCHHHHHHhhcC--C----CC---CC-HHHHHHHhcCCCCCC
Q psy15666 265 GSTSTQIAKVHSVSPAQVLLRWALQENFLIIPKSVTPERIVQNIAL--D----FE---LS-PEEVKAIENIPNKQK 330 (339)
Q Consensus 265 ~~~l~~la~~~~~s~~~~al~~~l~~~~~~i~g~~~~~~l~enl~~--~----~~---L~-~~~~~~l~~~~~~~r 330 (339)
. + .-.++++..++...+||+.++.++...++. + || +. +.-++.|.......+
T Consensus 89 ~------------~--~~v~~~~~~~~i~~iPG~~TptEi~~A~~~Ga~~vKlFPA~~~GG~~yikal~~plp~i~ 150 (204)
T TIGR01182 89 L------------T--PELAKHAQDHGIPIIPGVATPSEIMLALELGITALKLFPAEVSGGVKMLKALAGPFPQVR 150 (204)
T ss_pred C------------C--HHHHHHHHHcCCcEECCCCCHHHHHHHHHCCCCEEEECCchhcCCHHHHHHHhccCCCCc
Confidence 2 1 235566777778888888888888888865 2 23 32 555666666555443
No 107
>TIGR00190 thiC thiamine biosynthesis protein ThiC. The thiC ortholog is designated thiA in Bacillus subtilis.
Probab=32.66 E-value=47 Score=31.68 Aligned_cols=32 Identities=19% Similarity=0.377 Sum_probs=24.9
Q ss_pred CCCCCCchhHHHHHHhCCCeEEEeccCCCCCCCCCC
Q psy15666 4 HPHFLQPQELIDVCNQNKIALQAYASLGSTSSNPLI 39 (339)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~i~~~~yspL~~g~~~~~~ 39 (339)
||||.+-++|++.|+++++.+ +||-|..++-+
T Consensus 199 NPlye~fD~lLeI~~~yDVtl----SLGDglRPG~i 230 (423)
T TIGR00190 199 NPLYKNFDYILEIAKEYDVTL----SLGDGLRPGCI 230 (423)
T ss_pred CchHHHHHHHHHHHHHhCeee----eccCCcCCCcc
Confidence 788777678999999999987 57777554444
No 108
>PRK14476 nitrogenase molybdenum-cofactor biosynthesis protein NifN; Provisional
Probab=32.55 E-value=4.8e+02 Score=25.47 Aligned_cols=118 Identities=14% Similarity=0.110 Sum_probs=65.3
Q ss_pred ccccccCHHHHHHHHHhhcccCCCCCCceEEEeccCCCCCCCHHHHHHHHHHHHHhcC-CCcccEEEeecCCCCCCCCCC
Q psy15666 103 TAQEYGNEASIGRALKVLLPKFNLKREDIFITSKLSPQYNGNADQVKSLVAQTLKDLG-TTYLDLFLIHWPGTFGVDSSS 181 (339)
Q Consensus 103 ta~~y~~E~~lG~al~~~~~~~~~~R~~~~i~tK~~~~~~~~~~~~~~~~~~sL~~L~-~d~iDl~~lH~~~~~~~~~~~ 181 (339)
..-.||.|+.+-++|++...... .+=++|.|-+-+.-.+ +++...+++.-++.. ..-+.++.++.|++.+.
T Consensus 70 ~d~VfGg~~~L~~aI~~~~~~~~--P~~I~V~ttC~~eiIG--DDi~~v~~~~~~~~p~~~~~pvi~v~tpgF~g~---- 141 (455)
T PRK14476 70 VTTILGGDENVEEAILNICKKAK--PKIIGLCTTGLTETRG--DDVAGALKEIRARHPELADTPIVYVSTPDFKGA---- 141 (455)
T ss_pred cceEeCCHHHHHHHHHHHHHhhC--CCEEEEeCcchHhhhh--ccHHHHHHHHHhhccccCCCeEEEecCCCCCCc----
Confidence 34488988888888887755432 3446666655332112 234444444333321 11367888998865421
Q ss_pred CcccccHHHHHHHHHH-hhC------CCCCCccEEEecC---CCHHHHHHHHHcCCCce
Q psy15666 182 PQQISNRHTLWNALTE-LYN------PNNGPLKSIGVSN---YTAKHLVNLIQNSKVVP 230 (339)
Q Consensus 182 ~~~~~~~~~~~~~l~~-l~~------~~~G~ir~iGvS~---~~~~~l~~~~~~~~~~~ 230 (339)
.......+++++-+ +.. .++++|--||-++ -+.+.+.++++..++.+
T Consensus 142 --~~~G~~~a~~al~~~~~~~~~~~~~~~~~VNiIgg~~~~~~D~~elk~lL~~~Gl~v 198 (455)
T PRK14476 142 --LEDGWAAAVEAIVEALVPPASSTGRRPRQVNVLPGSHLTPGDIEELREIIEAFGLEP 198 (455)
T ss_pred --HHHHHHHHHHHHHHHhcccccCCCCCCCcEEEECCCCCCcccHHHHHHHHHHcCCce
Confidence 11223444444332 221 1347899997554 34577888888887765
No 109
>COG4626 Phage terminase-like protein, large subunit [General function prediction only]
Probab=32.30 E-value=1.7e+02 Score=29.28 Aligned_cols=74 Identities=8% Similarity=0.004 Sum_probs=52.0
Q ss_pred cHHHHHHHHHHhhCCCCCCccEEEecCCCHHHHHHHHHcCCCceeEeccccCCCCCCcHHHHHHHHhCCceEEEecc
Q psy15666 187 NRHTLWNALTELYNPNNGPLKSIGVSNYTAKHLVNLIQNSKVVPAVNQVEFHPHFLQPQELIDVCNQNKIALQAYAS 263 (339)
Q Consensus 187 ~~~~~~~~l~~l~~~~~G~ir~iGvS~~~~~~l~~~~~~~~~~~~~~q~~~~~~~~~~~~l~~~~~~~gi~v~~~~~ 263 (339)
+..++.+.+.+.++. .+|+.+|+=.+....+...++..++++..+--.|.-+... ..-++..-..|.-+..-.|
T Consensus 411 d~~~I~ew~~~~~~~--~~i~~v~~D~~g~~~~~~~l~~~g~~lv~i~Q~~~~l~~~-~k~~e~~~~~g~i~~~dnp 484 (546)
T COG4626 411 DYAEIVEWFMEIREK--FLIKLVGFDPSGAGEFRDALAEAGIKVVGIPQGFKKLSGA-IKTIERKLAEGVLVHGDNP 484 (546)
T ss_pred CHHHHHHHHHHHHHh--CCccEEeecccchHHHHHHHHhCCCceeeccchhhhhCch-hHHHHHHHhcCcEEECCCc
Confidence 477888999999988 9999999999999999999999988765444343322222 3445555556655554333
No 110
>TIGR01861 ANFD nitrogenase iron-iron protein, alpha chain. This model represents the all-iron variant of the nitrogenase component I alpha chain. Molybdenum-iron and vanadium iron forms are also found. The complete complex contains two alpha chains, two beta chains and two delta chains. The component I associates with component II also known as the iron protein which serves to provide electrons for component I.
Probab=31.62 E-value=5.4e+02 Score=25.70 Aligned_cols=166 Identities=12% Similarity=0.175 Sum_probs=94.0
Q ss_pred ccccccCHHHHHHHHHhhcccCCCCCCceEEEeccCCCCCCCHHHHHHHHHHHHHhcCCCcccEEEeecCCCCCCCCCCC
Q psy15666 103 TAQEYGNEASIGRALKVLLPKFNLKREDIFITSKLSPQYNGNADQVKSLVAQTLKDLGTTYLDLFLIHWPGTFGVDSSSP 182 (339)
Q Consensus 103 ta~~y~~E~~lG~al~~~~~~~~~~R~~~~i~tK~~~~~~~~~~~~~~~~~~sL~~L~~d~iDl~~lH~~~~~~~~~~~~ 182 (339)
..-.||.|+.+-++|.+.+..+. ..+-++|.|-+...-.+ +++..-+++.-++.. -+.++.+|.|++.+.....
T Consensus 105 ~diVfGGe~kL~~~I~ea~~~~~-~p~~I~V~tTC~t~lIG--DDi~av~k~~~~~~~--~~pVi~v~tpGF~G~~~~g- 178 (513)
T TIGR01861 105 KHVVFGAEKLLKQNIIEAFKAFP-HIKRMTIYQTCATALIG--DDIAAIAKEVMEEMP--DVDIFVCNSPGFAGPSQSG- 178 (513)
T ss_pred CceEeCcHHHHHHHHHHHHHhCC-CCCeEEEEccCchhhcc--CCHHHHHHHHHHhcC--CCcEEEEeCCCccCccccc-
Confidence 34578888877777766654431 24458888877654222 456666666555541 2789999999776432211
Q ss_pred cccccHHHHHH-HHHHhhC------CCCCCccEEEecCC--CHHHHHHHHHcCCCceeEeccccC--------------C
Q psy15666 183 QQISNRHTLWN-ALTELYN------PNNGPLKSIGVSNY--TAKHLVNLIQNSKVVPAVNQVEFH--------------P 239 (339)
Q Consensus 183 ~~~~~~~~~~~-~l~~l~~------~~~G~ir~iGvS~~--~~~~l~~~~~~~~~~~~~~q~~~~--------------~ 239 (339)
....+.+ .++.++. ..++.|--||-.|. +.+.+.++++..++.+...-..-. +
T Consensus 179 ----g~~~a~~ali~~~v~~~~~~~~~~~~VNliG~~n~~gD~~eik~lLe~~Gl~v~~~~~gg~t~~ei~~~~~A~lni 254 (513)
T TIGR01861 179 ----GHHKINIAWINQKVGTVEPEIKGKHVINYVGEYNIQGDQEVMVDYFQRMGIQVLSTFTGNGSYDDLRGMHRAHLNV 254 (513)
T ss_pred ----hHHHHHHHHHHHhhcccCcccCCCCeEEEeCCCCCccCHHHHHHHHHHCCCeEEEEeCCCCCHHHHHhhccCCEEE
Confidence 0111222 2233331 11267888886554 457889999988776543221111 1
Q ss_pred CCCC--cHHHHHHH-HhCCceEEEecchhH-----HHHHHHHHcCCC
Q psy15666 240 HFLQ--PQELIDVC-NQNKIALQAYASLGS-----TSTQIAKVHSVS 278 (339)
Q Consensus 240 ~~~~--~~~l~~~~-~~~gi~v~~~~~l~~-----~l~~la~~~~~s 278 (339)
.... ...+-++. ++.||+.+..+|+|- .|+.+++-+|..
T Consensus 255 v~~~~~~~~~A~~Leer~GiP~~~~~~~Gi~~Td~~Lr~la~~~g~~ 301 (513)
T TIGR01861 255 LECARSAEYICNELRKRYGIPRLDIDGFGFEPLAASLRKVAMFFGIE 301 (513)
T ss_pred EECHHHHHHHHHHHHHHhCCCeEecCcCCHHHHHHHHHHHHHHhCCC
Confidence 0000 01222223 477999988887754 788888888754
No 111
>COG2089 SpsE Sialic acid synthase [Cell envelope biogenesis, outer membrane]
Probab=30.80 E-value=2e+02 Score=26.80 Aligned_cols=78 Identities=17% Similarity=0.221 Sum_probs=46.1
Q ss_pred CCceEEEeccCCCCCCCHHHHHHHHHHHHHhcCCCcccEEEeecCCCCCCCCCCCcccccHHHH-HHHHHHhhCCCCCCc
Q psy15666 128 REDIFITSKLSPQYNGNADQVKSLVAQTLKDLGTTYLDLFLIHWPGTFGVDSSSPQQISNRHTL-WNALTELYNPNNGPL 206 (339)
Q Consensus 128 R~~~~i~tK~~~~~~~~~~~~~~~~~~sL~~L~~d~iDl~~lH~~~~~~~~~~~~~~~~~~~~~-~~~l~~l~~~~~G~i 206 (339)
-+.+.++|=.... +.+.++++...++=. .|+.+||+....... .+++ +.+|-.|.+. = -
T Consensus 147 ~kPiIlSTGma~~-----~ei~~av~~~r~~g~---~~i~LLhC~s~YPap---------~ed~NL~~i~~l~~~--F-n 206 (347)
T COG2089 147 GKPIILSTGMATI-----EEIEEAVAILRENGN---PDIALLHCTSAYPAP---------FEDVNLKAIPKLAEA--F-N 206 (347)
T ss_pred CCCEEEEcccccH-----HHHHHHHHHHHhcCC---CCeEEEEecCCCCCC---------HHHhhHHHHHHHHHH--h-C
Confidence 3468888876554 678888776555433 399999997432111 1111 3333343332 1 2
Q ss_pred cEEEecCCCHHHHHHHHHc
Q psy15666 207 KSIGVSNYTAKHLVNLIQN 225 (339)
Q Consensus 207 r~iGvS~~~~~~l~~~~~~ 225 (339)
--||+|.|+...+.-+...
T Consensus 207 ~~vGlSDHT~g~~a~l~Av 225 (347)
T COG2089 207 AIVGLSDHTLGILAPLAAV 225 (347)
T ss_pred CccccccCccchhHHHHHH
Confidence 3699999998765554443
No 112
>TIGR01286 nifK nitrogenase molybdenum-iron protein beta chain. This model represents the majority of known sequences of the nitrogenase molybdenum-iron protein beta subunit. A distinct clade in a phylogenetic tree contains molybdenum-iron, vanadium-iron, and iron-iron forms of nitrogenase beta subunit and is excluded from this model. Nitrogenase, also called dinitrogenase, is responsible for nitrogen fixation. Note: the trusted cutoff score has recently been lowered to include an additional family in which the beta subunit is shorter by about 50 amino acids at the N-terminus. In species with the shorter form of the beta subunit, the alpha subunit has a novel insert of similar length.
Probab=30.44 E-value=2e+02 Score=28.65 Aligned_cols=125 Identities=12% Similarity=0.128 Sum_probs=69.8
Q ss_pred cccccccCHHHHHHHHHhhcccCCCCCCceEEEeccCCCCCCCHHHHHHHHHHHHHhcCC-CcccEEEeecCCCCCCCCC
Q psy15666 102 DTAQEYGNEASIGRALKVLLPKFNLKREDIFITSKLSPQYNGNADQVKSLVAQTLKDLGT-TYLDLFLIHWPGTFGVDSS 180 (339)
Q Consensus 102 Dta~~y~~E~~lG~al~~~~~~~~~~R~~~~i~tK~~~~~~~~~~~~~~~~~~sL~~L~~-d~iDl~~lH~~~~~~~~~~ 180 (339)
+.+..||.+..+-++|++....+. -+=++|+|-+.+.-.+ +.+..-+++.-+...+ +-+++..+|.|++.+....
T Consensus 119 E~~aVfGG~~~L~e~I~~~~~~y~--P~~I~V~tTC~~evIG--DDi~a~i~~~~~~~~~p~~~pVi~v~TpgF~Gs~~~ 194 (515)
T TIGR01286 119 EDAAVFGGLKNMVDGLQNCYALYK--PKMIAVSTTCMAEVIG--DDLNAFIGNAKKEGFIPDDFPVPFAHTPSFVGSHIT 194 (515)
T ss_pred CCceeeCcHHHHHHHHHHHHHhcC--CCEEEEeCCcHHHHhh--ccHHHHHHHHHHhcCCCCCCceEEeeCCCCcccHHH
Confidence 344578888888888887654432 3446677766543222 3466666666555543 2468999999976531100
Q ss_pred CCcccccHHHHHHHHHHhh-----CCCCCCccEEE-ecC--CCHHHHHHHHHcCCCceeE
Q psy15666 181 SPQQISNRHTLWNALTELY-----NPNNGPLKSIG-VSN--YTAKHLVNLIQNSKVVPAV 232 (339)
Q Consensus 181 ~~~~~~~~~~~~~~l~~l~-----~~~~G~ir~iG-vS~--~~~~~l~~~~~~~~~~~~~ 232 (339)
. .......+++.|..-. +..+++|--|| +.. -+...+.++++..++++.+
T Consensus 195 G--yd~a~~ail~~l~~~~~~~~~~~~~~~VNii~g~~~~~gd~~eikrlL~~~Gi~~~~ 252 (515)
T TIGR01286 195 G--YDNMFKGILEYFTKGSMDDKVVGSNGKINIIPGFETYIGNFREIKRILSLMGVGYTL 252 (515)
T ss_pred H--HHHHHHHHHHHHhhcccccccCCCCCeEEEECCCCCCchhHHHHHHHHHHcCCCeEE
Confidence 0 0011233333332211 12237788885 433 3357888899888776543
No 113
>cd07948 DRE_TIM_HCS Saccharomyces cerevisiae homocitrate synthase and related proteins, catalytic TIM barrel domain. Homocitrate synthase (HCS) catalyzes the condensation of acetyl-CoA and alpha-ketoglutarate to form homocitrate, the first step in the lysine biosynthesis pathway. This family includes the Yarrowia lipolytica LYS1 protein as well as the Saccharomyces cerevisiae LYS20 and LYS21 proteins. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. Th
Probab=29.80 E-value=3.5e+02 Score=24.20 Aligned_cols=96 Identities=15% Similarity=0.126 Sum_probs=54.4
Q ss_pred HHHHHHHHHHHhcCCCcccEEEeecCCCCCCCCCCCcccccHHHHHHHHHHhhCCCCCC-ccEEEecCCCHHHHHHHHHc
Q psy15666 147 QVKSLVAQTLKDLGTTYLDLFLIHWPGTFGVDSSSPQQISNRHTLWNALTELYNPNNGP-LKSIGVSNYTAKHLVNLIQN 225 (339)
Q Consensus 147 ~~~~~~~~sL~~L~~d~iDl~~lH~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~G~-ir~iGvS~~~~~~l~~~~~~ 225 (339)
.-+..+-+.|.++|++.|.+-. |.. ..+.++..+.+.+. ++ .+-.++...+.+.++.+.+.
T Consensus 22 ~~k~~i~~~L~~~Gv~~IEvG~---P~~-------------~~~~~~~~~~l~~~--~~~~~v~~~~r~~~~di~~a~~~ 83 (262)
T cd07948 22 EDKIEIAKALDAFGVDYIELTS---PAA-------------SPQSRADCEAIAKL--GLKAKILTHIRCHMDDARIAVET 83 (262)
T ss_pred HHHHHHHHHHHHcCCCEEEEEC---CCC-------------CHHHHHHHHHHHhC--CCCCcEEEEecCCHHHHHHHHHc
Confidence 3455666779999999988763 511 12223344444433 32 34466667778888888886
Q ss_pred CCCceeEeccccCCC------CCC-------cHHHHHHHHhCCceEEEe
Q psy15666 226 SKVVPAVNQVEFHPH------FLQ-------PQELIDVCNQNKIALQAY 261 (339)
Q Consensus 226 ~~~~~~~~q~~~~~~------~~~-------~~~l~~~~~~~gi~v~~~ 261 (339)
+ ++...+-++.|.. ... -.+.+.+++++|+.+...
T Consensus 84 g-~~~i~i~~~~S~~~~~~~~~~~~~e~~~~~~~~i~~a~~~G~~v~~~ 131 (262)
T cd07948 84 G-VDGVDLVFGTSPFLREASHGKSITEIIESAVEVIEFVKSKGIEVRFS 131 (262)
T ss_pred C-cCEEEEEEecCHHHHHHHhCCCHHHHHHHHHHHHHHHHHCCCeEEEE
Confidence 3 3322222222221 111 145678889999876554
No 114
>cd00308 enolase_like Enolase-superfamily, characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and is stabilized by coordination to the essential Mg2+ ion. Enolase superfamily contains different enzymes, like enolases, glutarate-, fucanate- and galactonate dehydratases, o-succinylbenzoate synthase, N-acylamino acid racemase, L-alanine-DL-glutamate epimerase, mandelate racemase, muconate lactonizing enzyme and 3-methylaspartase.
Probab=29.74 E-value=3.7e+02 Score=23.20 Aligned_cols=70 Identities=11% Similarity=0.053 Sum_probs=46.3
Q ss_pred HHHHHHhhCCCCCCcc-EEEecCCCHHHHHHHHHcCCCceeEeccccCCCCC--CcHHHHHHHHhCCceEEEecchh
Q psy15666 192 WNALTELYNPNNGPLK-SIGVSNYTAKHLVNLIQNSKVVPAVNQVEFHPHFL--QPQELIDVCNQNKIALQAYASLG 265 (339)
Q Consensus 192 ~~~l~~l~~~~~G~ir-~iGvS~~~~~~l~~~~~~~~~~~~~~q~~~~~~~~--~~~~l~~~~~~~gi~v~~~~~l~ 265 (339)
++.+.+|++. ..+. ..+=|.++...+..+++...+ +++|+..+..-. +..++..+|+++|+.++..+.+.
T Consensus 134 ~~~~~~L~~~--~~~pIa~dEs~~~~~~~~~~~~~~~~--d~~~~k~~~~GGi~~~~~i~~~a~~~gi~~~~~~~~~ 206 (229)
T cd00308 134 LEGYAALRRR--TGIPIAADESVTTVDDALEALELGAV--DILQIKPTRVGGLTESRRAADLAEAFGIRVMVHGTLE 206 (229)
T ss_pred HHHHHHHHhh--CCCCEEeCCCCCCHHHHHHHHHcCCC--CEEecCccccCCHHHHHHHHHHHHHcCCEEeecCCCC
Confidence 4555666666 5554 445666778888777776644 556665544321 12678899999999999877654
No 115
>PLN02746 hydroxymethylglutaryl-CoA lyase
Probab=29.22 E-value=2.5e+02 Score=26.45 Aligned_cols=100 Identities=14% Similarity=0.075 Sum_probs=58.4
Q ss_pred HHHHHHHHHHHHhcCCCcccEEEeecCCCCCCCCCCCcccccHHHHHHHHHHhhCCCCCCccEEEecCCCHHHHHHHHHc
Q psy15666 146 DQVKSLVAQTLKDLGTTYLDLFLIHWPGTFGVDSSSPQQISNRHTLWNALTELYNPNNGPLKSIGVSNYTAKHLVNLIQN 225 (339)
Q Consensus 146 ~~~~~~~~~sL~~L~~d~iDl~~lH~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~G~ir~iGvS~~~~~~l~~~~~~ 225 (339)
-.-+-.+-+.|.++|+++|+.-..-+|.. -|... +.+++.+.+.. . ..++..+++ .+...++.+++.
T Consensus 67 ~e~Ki~ia~~L~~~GV~~IEvGs~vspk~------vPqma-d~~ev~~~i~~---~--~~~~~~~l~-~n~~die~A~~~ 133 (347)
T PLN02746 67 TSVKVELIQRLVSSGLPVVEATSFVSPKW------VPQLA-DAKDVMAAVRN---L--EGARFPVLT-PNLKGFEAAIAA 133 (347)
T ss_pred HHHHHHHHHHHHHcCCCEEEECCCcCccc------ccccc-cHHHHHHHHHh---c--cCCceeEEc-CCHHHHHHHHHc
Confidence 45666788889999999999864433310 11211 24455555543 2 235555664 577889888886
Q ss_pred CCCceeEeccccCCCCC------C-------cHHHHHHHHhCCceEE
Q psy15666 226 SKVVPAVNQVEFHPHFL------Q-------PQELIDVCNQNKIALQ 259 (339)
Q Consensus 226 ~~~~~~~~q~~~~~~~~------~-------~~~l~~~~~~~gi~v~ 259 (339)
. .+...+-++.+..+. . -.+++++++++|+.+.
T Consensus 134 g-~~~v~i~~s~Sd~h~~~n~~~t~~e~l~~~~~~v~~Ak~~Gl~v~ 179 (347)
T PLN02746 134 G-AKEVAVFASASESFSKSNINCSIEESLVRYREVALAAKKHSIPVR 179 (347)
T ss_pred C-cCEEEEEEecCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCeEE
Confidence 4 222222222222111 1 1478999999999885
No 116
>TIGR03569 NeuB_NnaB N-acetylneuraminate synthase. This family is a subset of the Pfam model pfam03102 and is believed to include only authentic NeuB N-acetylneuraminate (sialic acid) synthase enzymes. The majority of the genes identified by this model are observed adjacent to both the NeuA and NeuC genes which together effect the biosynthesis of CMP-N-acetylneuraminate from UDP-N-acetylglucosamine.
Probab=28.92 E-value=85 Score=29.30 Aligned_cols=65 Identities=17% Similarity=0.218 Sum_probs=39.7
Q ss_pred HHHHHHHHhCCceEEEecchhHHHHHHHHHcCCCHH---------HHHHHHHhhCC--cEEecCCCCHHHHHHhhcC
Q psy15666 245 QELIDVCNQNKIALQAYASLGSTSTQIAKVHSVSPA---------QVLLRWALQEN--FLIIPKSVTPERIVQNIAL 310 (339)
Q Consensus 245 ~~l~~~~~~~gi~v~~~~~l~~~l~~la~~~~~s~~---------~~al~~~l~~~--~~~i~g~~~~~~l~enl~~ 310 (339)
..+.++|++.||.+++ +||.-.-.++..++|+..- --.|+.+-+.+ ++.=.|+++.+++++.++.
T Consensus 79 ~~L~~~~~~~Gi~~~s-tpfd~~svd~l~~~~v~~~KIaS~~~~n~pLL~~~A~~gkPvilStGmatl~Ei~~Av~~ 154 (329)
T TIGR03569 79 RELKEYCESKGIEFLS-TPFDLESADFLEDLGVPRFKIPSGEITNAPLLKKIARFGKPVILSTGMATLEEIEAAVGV 154 (329)
T ss_pred HHHHHHHHHhCCcEEE-EeCCHHHHHHHHhcCCCEEEECcccccCHHHHHHHHhcCCcEEEECCCCCHHHHHHHHHH
Confidence 5788888888888876 5665533334444543211 11455555543 4455588888888887754
No 117
>PF07994 NAD_binding_5: Myo-inositol-1-phosphate synthase; InterPro: IPR002587 1L-myo-Inositol-1-phosphate synthase (5.5.1.4 from EC) catalyzes the conversion of D-glucose 6-phosphate to 1L-myo-inositol-1-phosphate, the first committed step in the production of all inositol-containing compounds, including phospholipids, either directly or by salvage. The enzyme exists in a cytoplasmic form in a wide range of plants, animals, and fungi. It has also been detected in several bacteria and a chloroplast form is observed in alga and higher plants. Inositol phosphates play an important role in signal transduction. In Saccharomyces cerevisiae (Baker's yeast), the transcriptional regulation of the INO1 gene has been studied in detail [] and its expression is sensitive to the availability of phospholipid precursors as well as growth phase. The regulation of the structural gene encoding 1L-myo-inositol-1-phosphate synthase has also been analyzed at the transcriptional level in the aquatic angiosperm, Spirodela polyrrhiza (Giant duckweed) and the halophyte, Mesembryanthemum crystallinum (Common ice plant) [].; GO: 0004512 inositol-3-phosphate synthase activity, 0006021 inositol biosynthetic process, 0008654 phospholipid biosynthetic process; PDB: 1GR0_A 1P1K_B 1LA2_B 1RM0_B 1P1I_B 1JKF_A 1P1F_A 1P1J_B 1JKI_B 1P1H_A ....
Probab=28.64 E-value=1.5e+02 Score=27.12 Aligned_cols=133 Identities=13% Similarity=0.173 Sum_probs=73.0
Q ss_pred HHHHHHHHHHHHHhcCCCcccEEEeecCCCCCCCCCCCcccccHHHHHHHHHHhhCCCCCCccEEEecCCCHHHHHHHHH
Q psy15666 145 ADQVKSLVAQTLKDLGTTYLDLFLIHWPGTFGVDSSSPQQISNRHTLWNALTELYNPNNGPLKSIGVSNYTAKHLVNLIQ 224 (339)
Q Consensus 145 ~~~~~~~~~~sL~~L~~d~iDl~~lH~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~G~ir~iGvS~~~~~~l~~~~~ 224 (339)
.+.+++.+.+-+++.|+|++=++..-..+.. .+. .+ ...+++++|++..++ +.-. +--|.+. ...+++
T Consensus 131 ~e~~~~DI~~f~~~~~~d~vVvvn~asTE~~-~~~-~~----~~~~t~~~l~~al~~--~~~~-~~aS~~Y---A~AAl~ 198 (295)
T PF07994_consen 131 VEQIREDIRDFKKENGLDRVVVVNVASTERY-IPV-IP----GVHDTLEALEKALDE--NDPE-ISASMLY---AYAALE 198 (295)
T ss_dssp HHHHHHHHHHHHHHTT-SCEEEEE-SSCC-S-----CC----CCCSSHHHHHHHHHT--T-TT-HHHHHHH---HHHHHH
T ss_pred HHHHHHHHHHHHHHhCCCcEEEEECCCCCCC-CCC-Cc----cccCCHHHHHHHhhc--CCCc-CChHHHH---HHHHHH
Confidence 3678899999999999986544444433221 000 01 123457777777766 3211 1111111 111222
Q ss_pred cCCCceeEeccccCCCCCCcHHHHHHHHhCCceEEE---ecchhH-------HHHHHHHHcCCCHHHHHHHHHhhCCcE
Q psy15666 225 NSKVVPAVNQVEFHPHFLQPQELIDVCNQNKIALQA---YASLGS-------TSTQIAKVHSVSPAQVLLRWALQENFL 293 (339)
Q Consensus 225 ~~~~~~~~~q~~~~~~~~~~~~l~~~~~~~gi~v~~---~~~l~~-------~l~~la~~~~~s~~~~al~~~l~~~~~ 293 (339)
.+.. -+|-.|-+... ...+.+.++++|+.+.+ -++++. ++.++|.+.|....+-.++|....|.+
T Consensus 199 -~g~~-fvN~tP~~~a~--~P~l~ela~~~gvpi~GdD~KT~lAAplvlDLirl~~la~r~g~~Gv~~~ls~ffK~P~~ 273 (295)
T PF07994_consen 199 -AGVP-FVNGTPSNIAD--DPALVELAEEKGVPIAGDDGKTPLAAPLVLDLIRLAKLALRRGMGGVQEWLSFFFKSPMV 273 (295)
T ss_dssp -TTEE-EEE-SSSTTTT--SHHHHHHHHHHTEEEEESSBS-HHHHHHHHHHHHHHHHHHHTTS-EEHHHHHHHBSS-T-
T ss_pred -CCCC-eEeccCccccC--CHHHHHHHHHcCCCeecchHhhhhhhHHHHHHHHHHHHHHHcCCCChhHHHHHHhcCCCc
Confidence 2222 23333322221 26899999999999886 235554 788899999988788889999988863
No 118
>PRK09613 thiH thiamine biosynthesis protein ThiH; Reviewed
Probab=28.39 E-value=2.6e+02 Score=27.52 Aligned_cols=110 Identities=17% Similarity=0.216 Sum_probs=63.7
Q ss_pred HHHHHHHHHHHHHhcCCCcccEEEeecCCCCCCCCCCCcccccHHHHHHHHHHhhCC--CCCCccEEEecC--CCHHHHH
Q psy15666 145 ADQVKSLVAQTLKDLGTTYLDLFLIHWPGTFGVDSSSPQQISNRHTLWNALTELYNP--NNGPLKSIGVSN--YTAKHLV 220 (339)
Q Consensus 145 ~~~~~~~~~~sL~~L~~d~iDl~~lH~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~--~~G~ir~iGvS~--~~~~~l~ 220 (339)
.+.+.+.++. +..+|...+-|.-=..| +... .+-+.+.++.+++. ++|.++.++|+- .+.+++.
T Consensus 117 ~EEI~~ea~~-~~~~G~~~i~LvsGe~p---------~~~~--~eyi~e~i~~I~~~~~~~g~i~~v~inig~lt~eey~ 184 (469)
T PRK09613 117 QEEIREEVKA-LEDMGHKRLALVAGEDP---------PNCD--IEYILESIKTIYSTKHGNGEIRRVNVNIAPTTVENYK 184 (469)
T ss_pred HHHHHHHHHH-HHHCCCCEEEEEeCCCC---------CCCC--HHHHHHHHHHHHHhccccCcceeeEEEeecCCHHHHH
Confidence 3778888875 57788776654311111 1112 44455555555531 127888777754 5668888
Q ss_pred HHHHcCCCceeEeccccC-----CCCC-----C---cHHHHHHHHhCCceEEEecchhH
Q psy15666 221 NLIQNSKVVPAVNQVEFH-----PHFL-----Q---PQELIDVCNQNKIALQAYASLGS 266 (339)
Q Consensus 221 ~~~~~~~~~~~~~q~~~~-----~~~~-----~---~~~l~~~~~~~gi~v~~~~~l~~ 266 (339)
++.+.+--...+.|=-|| -+++ . .-+.++.+++.|+.-++.+.|-|
T Consensus 185 ~LkeaGv~~~~l~qETY~~ety~~~hp~g~k~~y~~Rl~t~~rA~~aGi~~Vg~G~L~G 243 (469)
T PRK09613 185 KLKEAGIGTYQLFQETYHKPTYEKMHPSGPKSDYDWRLTAMDRAMEAGIDDVGIGVLFG 243 (469)
T ss_pred HHHHcCCCEEEeccccCCHHHHHhcCCCCCCCCHHHHHHHHHHHHHcCCCeeCeEEEEc
Confidence 888876333345554443 1111 1 14688889999998666666655
No 119
>PRK02910 light-independent protochlorophyllide reductase subunit B; Provisional
Probab=28.15 E-value=6.1e+02 Score=25.25 Aligned_cols=161 Identities=11% Similarity=0.077 Sum_probs=85.8
Q ss_pred ccCHHHHHHHHHhhcccCCCCCCc-eEEEeccCCCCCCCHHHHHHHHHHHHHhcCCCcccEEEeecCCCCCCCCCCCccc
Q psy15666 107 YGNEASIGRALKVLLPKFNLKRED-IFITSKLSPQYNGNADQVKSLVAQTLKDLGTTYLDLFLIHWPGTFGVDSSSPQQI 185 (339)
Q Consensus 107 y~~E~~lG~al~~~~~~~~~~R~~-~~i~tK~~~~~~~~~~~~~~~~~~sL~~L~~d~iDl~~lH~~~~~~~~~~~~~~~ 185 (339)
+|+|+.+-+++.+...+. +.+ ++|.|-+.. +-+-..++...++++. .++++.++.|++..... .-..
T Consensus 67 ~G~~ekL~~aI~~~~~~~---~P~~I~V~sTC~s------eiIGdDi~~v~~~~~~-~~~Vi~v~t~gf~~~~~--~G~~ 134 (519)
T PRK02910 67 RGTAELLKDTLRRADERF---QPDLIVVGPSCTA------ELLQEDLGGLAKHAGL-PIPVLPLELNAYRVKEN--WAAD 134 (519)
T ss_pred CChHHHHHHHHHHHHHhc---CCCEEEEeCCcHH------HHhccCHHHHHHHhCC-CCCEEEEecCCcccccc--hHHH
Confidence 567777778887664332 334 456555433 2233333333344444 36799999996653211 0000
Q ss_pred ccHHHHHHHHHH-----h-hCCCCCCccEEEecC------CCHHHHHHHHHcCCCceeEeccccC---------------
Q psy15666 186 SNRHTLWNALTE-----L-YNPNNGPLKSIGVSN------YTAKHLVNLIQNSKVVPAVNQVEFH--------------- 238 (339)
Q Consensus 186 ~~~~~~~~~l~~-----l-~~~~~G~ir~iGvS~------~~~~~l~~~~~~~~~~~~~~q~~~~--------------- 238 (339)
..+..+++.+.. - ...+++.|--||.++ .+...+.++++..++.+.++ ++.+
T Consensus 135 ~al~~lv~~~~~~~~~~~~~~~~~~~VNIiG~~~l~f~~~~D~~EikrlL~~~Gi~vn~v-~p~g~s~~di~~l~~A~~n 213 (519)
T PRK02910 135 ETFYQLVRALAKKAAELPQPKTARPSVNLLGPTALGFHHRDDLTELRRLLATLGIDVNVV-APLGASPADLKRLPAAWFN 213 (519)
T ss_pred HHHHHHHHHHhhhcccccccCCCCCeEEEEecCccCCCChhHHHHHHHHHHHcCCeEEEE-eCCCCCHHHHHhcccCcEE
Confidence 112233333221 0 011236799999865 23467888888887755433 1111
Q ss_pred CCCCC--cHHHHHHH-HhCCceEEEecchhH-----HHHHHHHHcCCCHH
Q psy15666 239 PHFLQ--PQELIDVC-NQNKIALQAYASLGS-----TSTQIAKVHSVSPA 280 (339)
Q Consensus 239 ~~~~~--~~~l~~~~-~~~gi~v~~~~~l~~-----~l~~la~~~~~s~~ 280 (339)
+.... ...+-++. ++.|++++...|+|- -++++++-.|..+.
T Consensus 214 ivl~~~~g~~~A~~Lee~fGiP~i~~~PiG~~~T~~fL~~la~~~g~~~~ 263 (519)
T PRK02910 214 VVLYREIGESAARYLEREFGQPYVKTVPIGVGATARFIREVAELLNLDGA 263 (519)
T ss_pred EEeCHHHHHHHHHHHHHHhCCcccccccccHHHHHHHHHHHHHHhCCChh
Confidence 11001 02233333 366898887788875 78888888888654
No 120
>PF14871 GHL6: Hypothetical glycosyl hydrolase 6
Probab=28.06 E-value=52 Score=26.23 Aligned_cols=21 Identities=24% Similarity=0.577 Sum_probs=19.7
Q ss_pred HHHHHHHHhCCceEEEecchh
Q psy15666 245 QELIDVCNQNKIALQAYASLG 265 (339)
Q Consensus 245 ~~l~~~~~~~gi~v~~~~~l~ 265 (339)
.++++.|+++||.|++|-.+.
T Consensus 47 ge~v~a~h~~Girv~ay~~~~ 67 (132)
T PF14871_consen 47 GEQVEACHERGIRVPAYFDFS 67 (132)
T ss_pred HHHHHHHHHCCCEEEEEEeee
Confidence 789999999999999998886
No 121
>COG0422 ThiC Thiamine biosynthesis protein ThiC [Coenzyme metabolism]
Probab=28.01 E-value=84 Score=29.75 Aligned_cols=46 Identities=28% Similarity=0.387 Sum_probs=31.7
Q ss_pred CCCCCCchhHHHHHHhCCCeEEEeccCCCCCCCCCCCh-------------HHHHHHHHHcCC
Q psy15666 4 HPHFLQPQELIDVCNQNKIALQAYASLGSTSSNPLIAD-------------STLAQIAKVHSV 53 (339)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~i~~~~yspL~~g~~~~~~~~-------------~~l~~ia~~~~~ 53 (339)
||+|..-++|++.|+++++.+ +||-|.+.+-+.| -+|.+.|.++|+
T Consensus 200 Nply~~fd~lleI~k~yDvtl----SLGDglRPG~i~DA~D~aQ~~EL~tlgeL~krA~~~gV 258 (432)
T COG0422 200 NPLYEHFDELLEIFKEYDVTL----SLGDGLRPGCIADANDEAQFAELITLGELTKRAWEAGV 258 (432)
T ss_pred CchhhhHHHHHHHHHHhCeee----eccCCCCCCcccCCccHHHHHHHHHHHHHHHHHHHcCC
Confidence 687766689999999999987 4677654443332 245566666666
No 122
>PF00356 LacI: Bacterial regulatory proteins, lacI family; InterPro: IPR000843 Numerous bacterial transcription regulatory proteins bind DNA via a helix-turn-helix (HTH) motif. These proteins are very diverse, but for convenience may be grouped into subfamilies on the basis of sequence similarity. One such family groups together a range of proteins, including ascG, ccpA, cytR, ebgR, fruR, galR, galS, lacI, malI, opnR, purF, rafR, rbtR and scrR [, ]. Within this family, the HTH motif is situated towards the N terminus.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent, 0005622 intracellular; PDB: 3KJX_C 1ZAY_A 1VPW_A 2PUA_A 1QQA_A 1PNR_A 1JFT_A 1QP4_A 2PUD_A 1JH9_A ....
Probab=27.91 E-value=67 Score=20.38 Aligned_cols=17 Identities=29% Similarity=0.302 Sum_probs=15.2
Q ss_pred HHHHHHHcCCChhHHHH
Q psy15666 44 LAQIAKVHSVSPAQVLL 60 (339)
Q Consensus 44 l~~ia~~~~~s~aqv~l 60 (339)
|++||+..|+|++.|.-
T Consensus 2 i~dIA~~agvS~~TVSr 18 (46)
T PF00356_consen 2 IKDIAREAGVSKSTVSR 18 (46)
T ss_dssp HHHHHHHHTSSHHHHHH
T ss_pred HHHHHHHHCcCHHHHHH
Confidence 78999999999998775
No 123
>COG0135 TrpF Phosphoribosylanthranilate isomerase [Amino acid transport and metabolism]
Probab=27.84 E-value=2.7e+02 Score=24.14 Aligned_cols=131 Identities=15% Similarity=0.272 Sum_probs=71.1
Q ss_pred HHhcCCCcccEEEee-cCCCCCCCCCCCcccccHHHHHHHHHHhhCCCCCC-ccEEEecC-CCHHHHHHHHHcCCCceeE
Q psy15666 156 LKDLGTTYLDLFLIH-WPGTFGVDSSSPQQISNRHTLWNALTELYNPNNGP-LKSIGVSN-YTAKHLVNLIQNSKVVPAV 232 (339)
Q Consensus 156 L~~L~~d~iDl~~lH-~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~G~-ir~iGvS~-~~~~~l~~~~~~~~~~~~~ 232 (339)
...+|.||+-+.+.- +|. . -..+...++.+. .. ++.+||.. .+.+.+.++++.. .+++
T Consensus 18 a~~~gad~iG~If~~~SpR----------~-----Vs~~~a~~i~~~--v~~~~~VgVf~n~~~~~i~~i~~~~--~ld~ 78 (208)
T COG0135 18 AAKAGADYIGFIFVPKSPR----------Y-----VSPEQAREIASA--VPKVKVVGVFVNESIEEILEIAEEL--GLDA 78 (208)
T ss_pred HHHcCCCEEEEEEcCCCCC----------c-----CCHHHHHHHHHh--CCCCCEEEEECCCCHHHHHHHHHhc--CCCE
Confidence 356888998775544 331 1 112223333333 33 78999885 6668888988876 4578
Q ss_pred eccccCCCCCCcHHHHHHHHhCC-ceEE---EecchhHHHHHHHHHcCC--------------CHHHHHHHHHhhCCc--
Q psy15666 233 NQVEFHPHFLQPQELIDVCNQNK-IALQ---AYASLGSTSTQIAKVHSV--------------SPAQVLLRWALQENF-- 292 (339)
Q Consensus 233 ~q~~~~~~~~~~~~l~~~~~~~g-i~v~---~~~~l~~~l~~la~~~~~--------------s~~~~al~~~l~~~~-- 292 (339)
+|+.-. .+.+.++..++.. +.++ ..++-+. +...+..++. --.-..+.|.+-...
T Consensus 79 VQlHG~----e~~~~~~~l~~~~~~~v~kai~v~~~~~-~~~~~~~~~~~d~~LlDa~~~~~~GGtG~~fDW~~l~~~~~ 153 (208)
T COG0135 79 VQLHGD----EDPEYIDQLKEELGVPVIKAISVSEEGD-LELAAREEGPVDAILLDAKVPGLPGGTGQTFDWNLLPKLRL 153 (208)
T ss_pred EEECCC----CCHHHHHHHHhhcCCceEEEEEeCCccc-hhhhhhccCCccEEEEcCCCCCCCCCCCcEECHHHhccccc
Confidence 888754 2255666666654 4443 2222111 1111111110 001123344443332
Q ss_pred ---EEecCCCCHHHHHHhhcC
Q psy15666 293 ---LIIPKSVTPERIVQNIAL 310 (339)
Q Consensus 293 ---~~i~g~~~~~~l~enl~~ 310 (339)
+.+.|-=|++.+.+.++.
T Consensus 154 ~~~~~LAGGL~p~NV~~ai~~ 174 (208)
T COG0135 154 SKPVMLAGGLNPDNVAEAIAL 174 (208)
T ss_pred cCCEEEECCCCHHHHHHHHHh
Confidence 678888899999998875
No 124
>cd08319 Death_RAIDD Death domain of RIP-associated ICH-1 homologous protein with a death domain. Death domain (DD) of RAIDD (RIP-associated ICH-1 homologous protein with a death domain), also known as CRADD (Caspase and RIP adaptor). RAIDD is an adaptor protein that together with the p53-inducible protein PIDD and caspase-2, forms the PIDDosome complex, which is required for caspase-2 activation and plays a role in mediating stress-induced apoptosis. RAIDD contains an N-terminal Caspase Activation and Recruitment Domain (CARD), which interacts with the caspase-2 CARD, and a C-terminal DD, which interacts with the DD of PIDD. In general, DDs are protein-protein interaction domains found in a variety of domain architectures. Their common feature is that they form homodimers by self-association or heterodimers by associating with other members of the DD superfamily including CARD, DED (Death Effector Domain), and PYRIN. They serve as adaptors in signaling pathways and can recruit other pr
Probab=27.83 E-value=52 Score=23.92 Aligned_cols=71 Identities=23% Similarity=0.307 Sum_probs=47.9
Q ss_pred HHHHHHHHHHHhcCCCcccEEEeecCCCCCCCCCCCcccccHHHHHHHHHHhhCCCCCCccEEEecCCCHHHHHHHHHcC
Q psy15666 147 QVKSLVAQTLKDLGTTYLDLFLIHWPGTFGVDSSSPQQISNRHTLWNALTELYNPNNGPLKSIGVSNYTAKHLVNLIQNS 226 (339)
Q Consensus 147 ~~~~~~~~sL~~L~~d~iDl~~lH~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~G~ir~iGvS~~~~~~l~~~~~~~ 226 (339)
.+-..=+.-...||+...|+..|..- .+... .+.+.+.|...++. - | ...+.+.+..++..+
T Consensus 11 ~LG~~W~~Lar~Lgls~~~I~~i~~~--------~p~~l--~eQv~~mL~~W~~r--~-----G-~~ATv~~L~~aL~~~ 72 (83)
T cd08319 11 RLGPEWEQVLLDLGLSQTDIYRCKEN--------HPHNV--QSQIVEALVKWRQR--F-----G-KKATVQSLIQSLKAV 72 (83)
T ss_pred HHhhhHHHHHHHcCCCHHHHHHHHHh--------CCCCH--HHHHHHHHHHHHHh--c-----C-CCCcHHHHHHHHHHc
Confidence 34444456678889988888777653 22222 56777888888875 1 3 456788899999888
Q ss_pred CCceeEecc
Q psy15666 227 KVVPAVNQV 235 (339)
Q Consensus 227 ~~~~~~~q~ 235 (339)
++.|++.++
T Consensus 73 ~~~~~~~~~ 81 (83)
T cd08319 73 EVDPSVLQF 81 (83)
T ss_pred CCCHHHHHh
Confidence 877765443
No 125
>PRK01222 N-(5'-phosphoribosyl)anthranilate isomerase; Provisional
Probab=27.73 E-value=2.1e+02 Score=24.63 Aligned_cols=66 Identities=15% Similarity=0.220 Sum_probs=41.4
Q ss_pred HHhcCCCcccEEEeecCCCCCCCCCCCcccccHHHHHHHHHHhhCCCCCCccEEEec-CCCHHHHHHHHHcCCCceeEec
Q psy15666 156 LKDLGTTYLDLFLIHWPGTFGVDSSSPQQISNRHTLWNALTELYNPNNGPLKSIGVS-NYTAKHLVNLIQNSKVVPAVNQ 234 (339)
Q Consensus 156 L~~L~~d~iDl~~lH~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~G~ir~iGvS-~~~~~~l~~~~~~~~~~~~~~q 234 (339)
...+|.|++-+.+.... +... ..+..+.+.+.. . +.+..+||. +-+++.+.++++... ++++|
T Consensus 19 ~~~~Gad~iGfI~~~~S---------~R~V--~~~~a~~i~~~~-~--~~i~~VgVf~~~~~~~i~~~~~~~~--~d~vQ 82 (210)
T PRK01222 19 AAELGADAIGFVFYPKS---------PRYV--SPEQAAELAAAL-P--PFVKVVGVFVNASDEEIDEIVETVP--LDLLQ 82 (210)
T ss_pred HHHcCCCEEEEccCCCC---------CCcC--CHHHHHHHHHhC-C--CCCCEEEEEeCCCHHHHHHHHHhcC--CCEEE
Confidence 34689999998632211 1111 233344444433 3 568899998 567889999988764 47888
Q ss_pred ccc
Q psy15666 235 VEF 237 (339)
Q Consensus 235 ~~~ 237 (339)
++-
T Consensus 83 LHg 85 (210)
T PRK01222 83 LHG 85 (210)
T ss_pred ECC
Confidence 864
No 126
>PRK07114 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=27.34 E-value=4.2e+02 Score=23.14 Aligned_cols=102 Identities=10% Similarity=0.054 Sum_probs=53.5
Q ss_pred HHHHHHHHHHhhCCCCCCccEEEecCCCHHH---HHHHHHcC-CCceeEeccccCCCCCCcHHHHHHHHhCCceEEEecc
Q psy15666 188 RHTLWNALTELYNPNNGPLKSIGVSNYTAKH---LVNLIQNS-KVVPAVNQVEFHPHFLQPQELIDVCNQNKIALQAYAS 263 (339)
Q Consensus 188 ~~~~~~~l~~l~~~~~G~ir~iGvS~~~~~~---l~~~~~~~-~~~~~~~q~~~~~~~~~~~~l~~~~~~~gi~v~~~~~ 263 (339)
.++..+..+.|++. | |+.+=|+.-++.. ++++.+.. .-.|.+ ......--..+-.+.+.+.|-.++..--
T Consensus 26 ~~~a~~~~~al~~g--G-i~~iEiT~~tp~a~~~i~~l~~~~~~~~p~~---~vGaGTVl~~e~a~~a~~aGA~FiVsP~ 99 (222)
T PRK07114 26 VEVAKKVIKACYDG--G-ARVFEFTNRGDFAHEVFAELVKYAAKELPGM---ILGVGSIVDAATAALYIQLGANFIVTPL 99 (222)
T ss_pred HHHHHHHHHHHHHC--C-CCEEEEeCCCCcHHHHHHHHHHHHHhhCCCe---EEeeEeCcCHHHHHHHHHcCCCEEECCC
Confidence 55666666777664 4 6777777755433 33333211 000111 0111111124455666677766665222
Q ss_pred hhHHHHHHHHHcCCCHHHHHHHHHhhCCcEEecCCCCHHHHHHhhcC
Q psy15666 264 LGSTSTQIAKVHSVSPAQVLLRWALQENFLIIPKSVTPERIVQNIAL 310 (339)
Q Consensus 264 l~~~l~~la~~~~~s~~~~al~~~l~~~~~~i~g~~~~~~l~enl~~ 310 (339)
+. .-.++++.+++...+||+.++.++.+.++.
T Consensus 100 ~~---------------~~v~~~~~~~~i~~iPG~~TpsEi~~A~~~ 131 (222)
T PRK07114 100 FN---------------PDIAKVCNRRKVPYSPGCGSLSEIGYAEEL 131 (222)
T ss_pred CC---------------HHHHHHHHHcCCCEeCCCCCHHHHHHHHHC
Confidence 21 235566666777777777777777777754
No 127
>TIGR00676 fadh2 5,10-methylenetetrahydrofolate reductase, prokaryotic form. This protein is an FAD-containing flavoprotein.
Probab=27.32 E-value=4.6e+02 Score=23.53 Aligned_cols=135 Identities=17% Similarity=0.269 Sum_probs=66.8
Q ss_pred HHHHHHHHHHHHhcCCCcccEEEeecCCCCCCCCCCCc-ccccHHHHHHHHHHhhCCCCCCccEEEecCCCH--------
Q psy15666 146 DQVKSLVAQTLKDLGTTYLDLFLIHWPGTFGVDSSSPQ-QISNRHTLWNALTELYNPNNGPLKSIGVSNYTA-------- 216 (339)
Q Consensus 146 ~~~~~~~~~sL~~L~~d~iDl~~lH~~~~~~~~~~~~~-~~~~~~~~~~~l~~l~~~~~G~ir~iGvS~~~~-------- 216 (339)
..+...+.. +..+|++ +++.|-.-.....+ .... ......++++.+.++ . |. -+||+..+.-
T Consensus 73 ~~l~~~L~~-~~~~Gi~--nvL~l~GD~~~~~~-~~~~~~f~~a~~Li~~i~~~--~--~~-f~ig~a~~Peghp~~~~~ 143 (272)
T TIGR00676 73 EEIREILRE-YRELGIR--HILALRGDPPKGEG-TPTPGGFNYASELVEFIRNE--F--GD-FDIGVAAYPEKHPEAPNL 143 (272)
T ss_pred HHHHHHHHH-HHHCCCC--EEEEeCCCCCCCCC-CCCCCCCCCHHHHHHHHHHh--c--CC-eeEEEEeCCCCCCCCCCH
Confidence 556666664 3777754 34445442111111 0111 111233444444333 2 33 5788877431
Q ss_pred -HHHHHHHHc--CCCceeEeccccCCCCCCcHHHHHHHHhCCceE--E-EecchhHHHHHHHHHcCCCHHHHHHHHHhhC
Q psy15666 217 -KHLVNLIQN--SKVVPAVNQVEFHPHFLQPQELIDVCNQNKIAL--Q-AYASLGSTSTQIAKVHSVSPAQVLLRWALQE 290 (339)
Q Consensus 217 -~~l~~~~~~--~~~~~~~~q~~~~~~~~~~~~l~~~~~~~gi~v--~-~~~~l~~~l~~la~~~~~s~~~~al~~~l~~ 290 (339)
.++..+.+. ++-.+.+.|.-|+.-. -.++++.|++.|+.+ + +..|+. ...-+++|..
T Consensus 144 ~~~~~~L~~K~~aGA~f~iTQ~~fd~~~--~~~~~~~~~~~gi~~PIi~Gi~p~~-------------s~k~~~~~~~-- 206 (272)
T TIGR00676 144 EEDIENLKRKVDAGADYAITQLFFDNDD--YYRFVDRCRAAGIDVPIIPGIMPIT-------------NFKQLLRFAE-- 206 (272)
T ss_pred HHHHHHHHHHHHcCCCeEeeccccCHHH--HHHHHHHHHHcCCCCCEecccCCcC-------------CHHHHHHHHh--
Confidence 234444433 2455677777776521 146788899997653 2 233332 2232455553
Q ss_pred CcEEecCCCCHHHHHHhhcC
Q psy15666 291 NFLIIPKSVTPERIVQNIAL 310 (339)
Q Consensus 291 ~~~~i~g~~~~~~l~enl~~ 310 (339)
++|..=|+.+.+.++.
T Consensus 207 ----~~Gv~vP~~~~~~l~~ 222 (272)
T TIGR00676 207 ----RCGAEIPAWLVKRLEK 222 (272)
T ss_pred ----ccCCCCCHHHHHHHHh
Confidence 5666667777776653
No 128
>COG5484 Uncharacterized conserved protein [Function unknown]
Probab=27.24 E-value=42 Score=29.81 Aligned_cols=25 Identities=28% Similarity=0.567 Sum_probs=20.8
Q ss_pred HHHHHHHHcCCChhHHHHHHHHhhcc
Q psy15666 43 TLAQIAKVHSVSPAQVLLRWALQENF 68 (339)
Q Consensus 43 ~l~~ia~~~~~s~aqv~l~w~l~~g~ 68 (339)
.+++||+++||+|.+| =.|-...|.
T Consensus 21 k~~dIAeklGvspnti-ksWKrr~gW 45 (279)
T COG5484 21 KLKDIAEKLGVSPNTI-KSWKRRDGW 45 (279)
T ss_pred cHHHHHHHhCCChHHH-HHHHHhcCC
Confidence 4789999999999995 478877775
No 129
>TIGR02329 propionate_PrpR propionate catabolism operon regulatory protein PrpR. At least five distinct pathways exists for the catabolism of propionate by way of propionyl-CoA. Members of this family represent the transcriptional regulatory protein PrpR, whose gene is found in most cases divergently transcribed from an operon for the methylcitric acid cycle of propionate catabolism. 2-methylcitric acid, a catabolite by this pathway, is a coactivator of PrpR.
Probab=27.16 E-value=1.9e+02 Score=28.91 Aligned_cols=70 Identities=9% Similarity=0.062 Sum_probs=42.2
Q ss_pred HHHHHHHHHHhhCCCCCCccEEEecCCCH--HHHHHHHHcCCCceeEeccccCCCCCCcHHHHHHHHhCCceEEEecch
Q psy15666 188 RHTLWNALTELYNPNNGPLKSIGVSNYTA--KHLVNLIQNSKVVPAVNQVEFHPHFLQPQELIDVCNQNKIALQAYASL 264 (339)
Q Consensus 188 ~~~~~~~l~~l~~~~~G~ir~iGvS~~~~--~~l~~~~~~~~~~~~~~q~~~~~~~~~~~~l~~~~~~~gi~v~~~~~l 264 (339)
.-+++++|..+++. +++|.-||+.+... ..+..++ .+ .+.+..|+-...- ...+..+++.|+.++.-..+
T Consensus 83 ~~Dil~al~~a~~~-~~~ia~vg~~~~~~~~~~~~~ll---~~--~i~~~~~~~~~e~-~~~~~~l~~~G~~~viG~~~ 154 (526)
T TIGR02329 83 GFDVMQALARARRI-ASSIGVVTHQDTPPALRRFQAAF---NL--DIVQRSYVTEEDA-RSCVNDLRARGIGAVVGAGL 154 (526)
T ss_pred hhhHHHHHHHHHhc-CCcEEEEecCcccHHHHHHHHHh---CC--ceEEEEecCHHHH-HHHHHHHHHCCCCEEECChH
Confidence 45678888777653 37888888887653 3444444 33 3334444332211 56777788888887764443
No 130
>PF08727 P3A: Poliovirus 3A protein like; InterPro: IPR014838 The 3A protein is found in positive-strand RNA viruses. It is a critical component of the poliovirus replication complex, and is also an inhibitor of host cell ER to Golgi transport. ; GO: 0003968 RNA-directed RNA polymerase activity, 0004197 cysteine-type endopeptidase activity, 0017111 nucleoside-triphosphatase activity; PDB: 1NG7_A.
Probab=27.02 E-value=36 Score=22.74 Aligned_cols=16 Identities=19% Similarity=0.428 Sum_probs=11.0
Q ss_pred hhHHHHHHhCCCeEEE
Q psy15666 11 QELIDVCNQNKIALQA 26 (339)
Q Consensus 11 ~~~~~~~~~~~i~~~~ 26 (339)
+++++||+++|-.+-+
T Consensus 30 ~eV~~YC~~~GWIip~ 45 (57)
T PF08727_consen 30 PEVREYCEEQGWIIPA 45 (57)
T ss_dssp HHHHHHHHHHT--TT-
T ss_pred HHHHHHHHHCCccccC
Confidence 5899999999865433
No 131
>cd00423 Pterin_binding Pterin binding enzymes. This family includes dihydropteroate synthase (DHPS) and cobalamin-dependent methyltransferases such as methyltetrahydrofolate, corrinoid iron-sulfur protein methyltransferase (MeTr) and methionine synthase (MetH). DHPS, a functional homodimer, catalyzes the condensation of p-aminobenzoic acid (pABA) in the de novo biosynthesis of folate, which is an essential cofactor in both nucleic acid and protein biosynthesis. Prokaryotes (and some lower eukaryotes) must synthesize folate de novo, while higher eukaryotes are able to utilize dietary folate and therefore lack DHPS. Sulfonamide drugs, which are substrate analogs of pABA, target DHPS. Cobalamin-dependent methyltransferases catalyze the transfer of a methyl group via a methyl- cob(III)amide intermediate. These include MeTr, a functional heterodimer, and the folate binding domain of MetH.
Probab=26.89 E-value=4.5e+02 Score=23.31 Aligned_cols=103 Identities=15% Similarity=0.140 Sum_probs=61.0
Q ss_pred HHHHHHHHHHHHhcCCCcccEEE-eecCCCCCCCCCCCcccccHHHHHHHHHHhhCCCCCCccEEEecCCCHHHHHHHHH
Q psy15666 146 DQVKSLVAQTLKDLGTTYLDLFL-IHWPGTFGVDSSSPQQISNRHTLWNALTELYNPNNGPLKSIGVSNYTAKHLVNLIQ 224 (339)
Q Consensus 146 ~~~~~~~~~sL~~L~~d~iDl~~-lH~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~G~ir~iGvS~~~~~~l~~~~~ 224 (339)
+.+.+..++. -.-|-|+||+=. --+|+.... +.. +..+.+...++.+++. -.+ -|.+-+++++.++++++
T Consensus 24 ~~~~~~a~~~-~~~GAdiIDvG~~st~p~~~~~---~~~--~E~~rl~~~v~~l~~~--~~~-piSIDT~~~~v~~aaL~ 94 (258)
T cd00423 24 DKALEHARRM-VEEGADIIDIGGESTRPGAEPV---SVE--EELERVIPVLRALAGE--PDV-PISVDTFNAEVAEAALK 94 (258)
T ss_pred HHHHHHHHHH-HHCCCCEEEECCCcCCCCCCcC---CHH--HHHHHHHHHHHHHHhc--CCC-eEEEeCCcHHHHHHHHH
Confidence 4444444333 366899999852 222311100 011 1134455666666654 333 37888999999999999
Q ss_pred cCCCceeEeccccCCCCCCcHHHHHHHHhCCceEEEec
Q psy15666 225 NSKVVPAVNQVEFHPHFLQPQELIDVCNQNKIALQAYA 262 (339)
Q Consensus 225 ~~~~~~~~~q~~~~~~~~~~~~l~~~~~~~gi~v~~~~ 262 (339)
.+ .+.+|-+. ..... .++++.+++.|..++.+.
T Consensus 95 ~g--~~iINdis--~~~~~-~~~~~l~~~~~~~vV~m~ 127 (258)
T cd00423 95 AG--ADIINDVS--GGRGD-PEMAPLAAEYGAPVVLMH 127 (258)
T ss_pred hC--CCEEEeCC--CCCCC-hHHHHHHHHcCCCEEEEC
Confidence 87 33444333 22222 578999999999888875
No 132
>cd03466 Nitrogenase_NifN_2 Nitrogenase_nifN_2: A subgroup of the NifN subunit of the NifEN complex: NifN forms an alpha2beta2 tetramer with NifE. NifN and nifE are structurally homologous to nitrogenase MoFe protein beta and alpha subunits respectively. NifEN participates in the synthesis of the iron-molybdenum cofactor (FeMoco) of the MoFe protein. NifB-co (an iron and sulfur containing precursor of the FeMoco) from NifB is transferred to the NifEN complex where it is further processed to FeMoco. The nifEN bound precursor of FeMoco has been identified as a molybdenum-free, iron- and sulfur- containing analog of FeMoco. It has been suggested that this nifEN bound precursor also acts as a cofactor precursor in nitrogenase systems which require a cofactor other than FeMoco: i.e. iron-vanadium cofactor (FeVco) or iron only cofactor (FeFeco). This group also contains the Clostidium fused NifN-NifB protein.
Probab=26.59 E-value=5e+02 Score=25.08 Aligned_cols=117 Identities=14% Similarity=0.218 Sum_probs=64.9
Q ss_pred cccccCHHHHHHHHHhhcccCCCCCCceEEEeccCCCCCCCHHHHHHHHHHHHHhcCCCcccEEEeecCCCCCCCCCCCc
Q psy15666 104 AQEYGNEASIGRALKVLLPKFNLKREDIFITSKLSPQYNGNADQVKSLVAQTLKDLGTTYLDLFLIHWPGTFGVDSSSPQ 183 (339)
Q Consensus 104 a~~y~~E~~lG~al~~~~~~~~~~R~~~~i~tK~~~~~~~~~~~~~~~~~~sL~~L~~d~iDl~~lH~~~~~~~~~~~~~ 183 (339)
.-.||.|+.+-++|++...... .+=++|.|-+.+.-.+ +++..-+++.-++.....+.++.++.|++.+.
T Consensus 63 dvVfGg~~kL~~aI~~~~~~~~--P~~I~V~ttc~~~iiG--dDi~~v~~~~~~~~~~~~~~vi~v~t~gF~g~------ 132 (429)
T cd03466 63 TTVYGGEKNLKKGLKNVIEQYN--PEVIGIATTCLSETIG--EDVPRIIREFREEVDDSEPKIIPASTPGYGGT------ 132 (429)
T ss_pred ceEECcHHHHHHHHHHHHHhcC--CCEEEEeCCchHHHhh--cCHHHHHHHHhhcccCCCCcEEEEECCCCccc------
Confidence 3478888899999987754432 2335566655433212 23444444433331112467888998866421
Q ss_pred ccccHHHHHHHHHH-hhC--CCCCCccEEEecC--CCHHHHHHHHHcCCCce
Q psy15666 184 QISNRHTLWNALTE-LYN--PNNGPLKSIGVSN--YTAKHLVNLIQNSKVVP 230 (339)
Q Consensus 184 ~~~~~~~~~~~l~~-l~~--~~~G~ir~iGvS~--~~~~~l~~~~~~~~~~~ 230 (339)
.......++++|-+ +.. .++++|--||-.+ .+.+.+.++++..++.+
T Consensus 133 ~~~G~~~a~~al~~~~~~~~~~~~~VNlig~~~~~~D~~ei~~lL~~~Gl~~ 184 (429)
T cd03466 133 HVEGYDTAVRSIVKNIAVDPDKIEKINVIAGMMSPADIREIKEILREFGIEY 184 (429)
T ss_pred HHHHHHHHHHHHHHHhccCCCCCCcEEEECCCCChhHHHHHHHHHHHcCCCe
Confidence 11124444444432 222 2237788887433 34578888998887765
No 133
>cd01968 Nitrogenase_NifE_I Nitrogenase_NifE_I: a subgroup of the NifE subunit of the NifEN complex: NifE forms an alpha2beta2 tetramer with NifN. NifE and NifN are structurally homologous to nitrogenase MoFe protein alpha and beta subunits respectively. NifEN participates in the synthesis of the iron-molybdenum cofactor (FeMoco) of the MoFe protein. NifB-co (an iron and sulfur containing precursor of the FeMoco) from NifB is transferred to the NifEN complex where it is further processed to FeMoco. The NifEN bound precursor of FeMoco has been identified as a molybdenum-free, iron- and sulfur- containing analog of FeMoco. It has been suggested that this NifEN bound precursor also acts as a cofactor precursor in nitrogenase systems which require a cofactor other than FeMoco: i.e. iron-vanadium cofactor (FeVco) or iron only cofactor (FeFeco).
Probab=26.53 E-value=5.7e+02 Score=24.40 Aligned_cols=164 Identities=14% Similarity=0.162 Sum_probs=94.0
Q ss_pred cccccccCHHHHHHHHHhhcccCCCCCCceEEEeccCCCCCCCHHHHHHHHHHHHHhcCCCcccEEEeecCCCCCCCCCC
Q psy15666 102 DTAQEYGNEASIGRALKVLLPKFNLKREDIFITSKLSPQYNGNADQVKSLVAQTLKDLGTTYLDLFLIHWPGTFGVDSSS 181 (339)
Q Consensus 102 Dta~~y~~E~~lG~al~~~~~~~~~~R~~~~i~tK~~~~~~~~~~~~~~~~~~sL~~L~~d~iDl~~lH~~~~~~~~~~~ 181 (339)
+..-.||.|+.+-++|++...... .+-++|.|-+.+.-.+ +++...+++.-++. -+.++.+|.|++.+.
T Consensus 63 E~d~VfGg~~~L~~~i~~~~~~~~--P~~i~v~~tC~~~~iG--dDi~~v~~~~~~~~---~~~vi~v~t~gf~g~---- 131 (410)
T cd01968 63 EKDVIFGGEKKLYKAILEIIERYH--PKAVFVYSTCVVALIG--DDIDAVCKTASEKF---GIPVIPVHSPGFVGN---- 131 (410)
T ss_pred ccceeeccHHHHHHHHHHHHHhCC--CCEEEEECCCchhhhc--cCHHHHHHHHHHhh---CCCEEEEECCCcccC----
Confidence 344568889999999998766532 3456677766543222 33555555444444 367889998865431
Q ss_pred CcccccHHHHHHHHHHhh-C---C---CCCCccEEEecCCC--HHHHHHHHHcCCCceeEecccc-C-------------
Q psy15666 182 PQQISNRHTLWNALTELY-N---P---NNGPLKSIGVSNYT--AKHLVNLIQNSKVVPAVNQVEF-H------------- 238 (339)
Q Consensus 182 ~~~~~~~~~~~~~l~~l~-~---~---~~G~ir~iGvS~~~--~~~l~~~~~~~~~~~~~~q~~~-~------------- 238 (339)
.......++++|-+.. . . +++.|--||-.+.. .+.+.++++..++++...-... +
T Consensus 132 --~~~G~~~a~~~l~~~l~~~~~~~~~~~~~VNiig~~~~~~d~~el~~lL~~~Gl~v~~~~~~~~s~eei~~~~~A~ln 209 (410)
T cd01968 132 --KNLGNKLACEALLDHVIGTEEPEPLTPYDINLIGEFNVAGELWGVKPLLEKLGIRVLASITGDSRVDEIRRAHRAKLN 209 (410)
T ss_pred --hhHHHHHHHHHHHHHhcCCCCcccCCCCcEEEECCCCCcccHHHHHHHHHHcCCeEEEEeCCCCCHHHHHhhhhCcEE
Confidence 1112344444443322 1 1 13778888854433 3688899998877654321111 1
Q ss_pred CCCCC--cHHHHHHH-HhCCceEEEecchhH-----HHHHHHHHcCCC
Q psy15666 239 PHFLQ--PQELIDVC-NQNKIALQAYASLGS-----TSTQIAKVHSVS 278 (339)
Q Consensus 239 ~~~~~--~~~l~~~~-~~~gi~v~~~~~l~~-----~l~~la~~~~~s 278 (339)
+.... ...+-++. ++.|++++...|++- .++++++.+|.+
T Consensus 210 iv~~~~~~~~~a~~L~~~fGip~~~~~p~G~~~t~~~l~~ia~~~g~~ 257 (410)
T cd01968 210 VVQCSKSMIYLARKMEEKYGIPYIEVSFYGIRDTSKSLRNIAELLGDE 257 (410)
T ss_pred EEEchhHHHHHHHHHHHHhCCCeEecCcCcHHHHHHHHHHHHHHhCCc
Confidence 10000 01233333 477999888776654 788999999876
No 134
>PRK11858 aksA trans-homoaconitate synthase; Reviewed
Probab=26.12 E-value=5.7e+02 Score=24.24 Aligned_cols=100 Identities=11% Similarity=0.123 Sum_probs=57.1
Q ss_pred HHHHHHHHHHHHhcCCCcccEEEeecCCCCCCCCCCCcccccHHHHHHHHHHhhCCCCCC-ccEEEecCCCHHHHHHHHH
Q psy15666 146 DQVKSLVAQTLKDLGTTYLDLFLIHWPGTFGVDSSSPQQISNRHTLWNALTELYNPNNGP-LKSIGVSNYTAKHLVNLIQ 224 (339)
Q Consensus 146 ~~~~~~~~~sL~~L~~d~iDl~~lH~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~G~-ir~iGvS~~~~~~l~~~~~ 224 (339)
..-+..+-+.|.++|+++|++- +|.. .++-++.++.+.+. |+ .+.++++-.....++.+.+
T Consensus 25 ~e~k~~ia~~L~~~GV~~IE~G---~p~~-------------~~~~~e~i~~i~~~--~~~~~i~~~~r~~~~di~~a~~ 86 (378)
T PRK11858 25 NEEKLAIARMLDEIGVDQIEAG---FPAV-------------SEDEKEAIKAIAKL--GLNASILALNRAVKSDIDASID 86 (378)
T ss_pred HHHHHHHHHHHHHhCCCEEEEe---CCCc-------------ChHHHHHHHHHHhc--CCCeEEEEEcccCHHHHHHHHh
Confidence 3455667778999999999974 3411 11224455555544 43 5555555555777888777
Q ss_pred cCCCceeEeccccCCCCC------C-------cHHHHHHHHhCCceEEEecch
Q psy15666 225 NSKVVPAVNQVEFHPHFL------Q-------PQELIDVCNQNKIALQAYASL 264 (339)
Q Consensus 225 ~~~~~~~~~q~~~~~~~~------~-------~~~l~~~~~~~gi~v~~~~~l 264 (339)
.. ++...+-++.|..+. . -.+.+.+++++|+.+....+-
T Consensus 87 ~g-~~~i~i~~~~Sd~h~~~~~~~s~~~~l~~~~~~v~~a~~~G~~v~~~~ed 138 (378)
T PRK11858 87 CG-VDAVHIFIATSDIHIKHKLKKTREEVLERMVEAVEYAKDHGLYVSFSAED 138 (378)
T ss_pred CC-cCEEEEEEcCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHCCCeEEEEecc
Confidence 53 332222223332211 1 145788999999887654333
No 135
>PF11116 DUF2624: Protein of unknown function (DUF2624); InterPro: IPR020277 This entry contains proteins with no known function.
Probab=26.08 E-value=36 Score=24.89 Aligned_cols=46 Identities=24% Similarity=0.315 Sum_probs=25.8
Q ss_pred hhHHHHHHhCCCeEEEe-----ccCCCCCCCCCCChH----HHHHHHHHcCCChh
Q psy15666 11 QELIDVCNQNKIALQAY-----ASLGSTSSNPLIADS----TLAQIAKVHSVSPA 56 (339)
Q Consensus 11 ~~~~~~~~~~~i~~~~y-----spL~~g~~~~~~~~~----~l~~ia~~~~~s~a 56 (339)
.||+.||+++||.++.= ..+-+|..-.++++. .+++||..-+...|
T Consensus 18 ~eLlkyskqy~i~it~~QA~~I~~~lr~k~inIfn~~~r~~llkeia~iT~p~ta 72 (85)
T PF11116_consen 18 KELLKYSKQYNISITKKQAEQIANILRGKNINIFNEQERKKLLKEIAKITSPQTA 72 (85)
T ss_pred HHHHHHHHHhCCCCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcCHHHH
Confidence 68999999999977531 122233222344432 46666655444333
No 136
>PF07836 DmpG_comm: DmpG-like communication domain; InterPro: IPR012425 This domain is found towards the C-terminal region of various aldolase enzymes. It consists of five alpha-helices, four of which form an antiparallel helical bundle that plugs the C terminus of the N-terminal TIM barrel domain []. The communication domain is thought to play an important role in the heterodimerisation of the enzyme []. Members of this entry heterodimerise with members of IPR003361 from INTERPRO to form a bifunctional aldolase-dehydrogenase [].; GO: 0016833 oxo-acid-lyase activity, 0019439 aromatic compound catabolic process; PDB: 1NVM_E.
Probab=25.68 E-value=97 Score=21.48 Aligned_cols=30 Identities=20% Similarity=0.314 Sum_probs=21.4
Q ss_pred EecchhHHHHHHHHHcCCCHHHHHHHHHhh
Q psy15666 260 AYASLGSTSTQIAKVHSVSPAQVLLRWALQ 289 (339)
Q Consensus 260 ~~~~l~~~l~~la~~~~~s~~~~al~~~l~ 289 (339)
.||.|.....+.|++||+++.++.+.-...
T Consensus 17 vySsFl~ha~raa~~ygVd~r~il~elgrR 46 (66)
T PF07836_consen 17 VYSSFLLHAERAAERYGVDPRDILVELGRR 46 (66)
T ss_dssp --TTHHHHHHHHHHHHT--HHHHHHHHHHC
T ss_pred hhHHHHHHHHHHHHHhCcCHHHHHHHHhcc
Confidence 467777688899999999999988876554
No 137
>PRK07094 biotin synthase; Provisional
Probab=25.38 E-value=4.6e+02 Score=23.99 Aligned_cols=115 Identities=11% Similarity=0.100 Sum_probs=61.6
Q ss_pred HHHHHHHHHHhhCCCCCCccEEEecC-----CCHHHHHHHHHcCCCceeEeccccCCCCCCcHHHHHHHHhCCceEEEec
Q psy15666 188 RHTLWNALTELYNPNNGPLKSIGVSN-----YTAKHLVNLIQNSKVVPAVNQVEFHPHFLQPQELIDVCNQNKIALQAYA 262 (339)
Q Consensus 188 ~~~~~~~l~~l~~~~~G~ir~iGvS~-----~~~~~l~~~~~~~~~~~~~~q~~~~~~~~~~~~l~~~~~~~gi~v~~~~ 262 (339)
.+++.+.++.+++. | ++.+.++. +..+.+.++++...-.+. +.+.++..... .+.+...++.|+..+..+
T Consensus 72 ~eei~~~~~~~~~~--g-~~~i~l~gG~~~~~~~~~l~~l~~~i~~~~~-l~i~~~~g~~~-~e~l~~Lk~aG~~~v~~g 146 (323)
T PRK07094 72 PEEILECAKKAYEL--G-YRTIVLQSGEDPYYTDEKIADIIKEIKKELD-VAITLSLGERS-YEEYKAWKEAGADRYLLR 146 (323)
T ss_pred HHHHHHHHHHHHHC--C-CCEEEEecCCCCCCCHHHHHHHHHHHHccCC-ceEEEecCCCC-HHHHHHHHHcCCCEEEec
Confidence 67777777777776 6 56666542 234555555543311111 12223333333 667788888887655433
Q ss_pred chhH---HHHHHHHHcCCCHHHH--HHHHHhhCCc----EEecC--CCCHHHHHHhhc
Q psy15666 263 SLGS---TSTQIAKVHSVSPAQV--LLRWALQENF----LIIPK--SVTPERIVQNIA 309 (339)
Q Consensus 263 ~l~~---~l~~la~~~~~s~~~~--al~~~l~~~~----~~i~g--~~~~~~l~enl~ 309 (339)
.=.. .+..+.. +.+..+. +++++...|. ..++| -.+.+++.+.+.
T Consensus 147 lEs~~~~~~~~i~~--~~s~~~~~~~i~~l~~~Gi~v~~~~iiGlpget~ed~~~~l~ 202 (323)
T PRK07094 147 HETADKELYAKLHP--GMSFENRIACLKDLKELGYEVGSGFMVGLPGQTLEDLADDIL 202 (323)
T ss_pred cccCCHHHHHHhCC--CCCHHHHHHHHHHHHHcCCeecceEEEECCCCCHHHHHHHHH
Confidence 3221 3333332 3455444 5777777763 25666 356677766654
No 138
>TIGR00035 asp_race aspartate racemase.
Probab=25.33 E-value=3.8e+02 Score=23.21 Aligned_cols=77 Identities=14% Similarity=0.083 Sum_probs=50.3
Q ss_pred HHHHHHHHHHHHhcCCCcccEEEeecCCCCCCC----CCCCcccccHHHHHHHHHHhhCCCCCCccEEEecCCCHHH-HH
Q psy15666 146 DQVKSLVAQTLKDLGTTYLDLFLIHWPGTFGVD----SSSPQQISNRHTLWNALTELYNPNNGPLKSIGVSNYTAKH-LV 220 (339)
Q Consensus 146 ~~~~~~~~~sL~~L~~d~iDl~~lH~~~~~~~~----~~~~~~~~~~~~~~~~l~~l~~~~~G~ir~iGvS~~~~~~-l~ 220 (339)
+..++-++.+-.+.+-++++.+.+++|+..+.. ..+...+ ...+.+.++.|.+. | +..|-+++.+... +.
T Consensus 17 ~~~~~i~~~~~a~~d~~~~~~i~~~~~~~~dr~~~~~~~~~~~~--~~~l~~~~~~L~~~--g-~d~iviaCNTah~~~~ 91 (229)
T TIGR00035 17 ELFRRINEKTKAKRDQEHPAEVLFNNPNIPDRTAYILGRGEDRP--RPILIDIAVKLENA--G-ADFIIMPCNTAHKFAE 91 (229)
T ss_pred HHHHHHHHHhHHhcCCCCCceeeeeCCCHHHHHHHHhcCCcchH--HHHHHHHHHHHHHc--C-CCEEEECCccHHHHHH
Confidence 566777777777888999999999998432110 0111122 45566777777766 5 7999999988765 44
Q ss_pred HHHHcCC
Q psy15666 221 NLIQNSK 227 (339)
Q Consensus 221 ~~~~~~~ 227 (339)
++-+...
T Consensus 92 ~l~~~~~ 98 (229)
T TIGR00035 92 DIQKAIG 98 (229)
T ss_pred HHHHhCC
Confidence 4444333
No 139
>cd00740 MeTr MeTr subgroup of pterin binding enzymes. This family includes cobalamin-dependent methyltransferases such as methyltetrahydrofolate, corrinoid iron-sulfur protein methyltransferase (MeTr) and methionine synthase (MetH). Cobalamin-dependent methyltransferases catalyze the transfer of a methyl group via a methyl- cob(III)amide intermediate. These include MeTr, a functional heterodimer, and the folate binding domain of MetH.
Probab=25.11 E-value=4.9e+02 Score=23.14 Aligned_cols=102 Identities=13% Similarity=0.048 Sum_probs=58.3
Q ss_pred HHHHHHHHHHHHhcCCCcccEEEeecCCCCCCCCCCCcccccHHHHHHHHHHhhCCCCCCccEEEecCCCHHHHHHHHHc
Q psy15666 146 DQVKSLVAQTLKDLGTTYLDLFLIHWPGTFGVDSSSPQQISNRHTLWNALTELYNPNNGPLKSIGVSNYTAKHLVNLIQN 225 (339)
Q Consensus 146 ~~~~~~~~~sL~~L~~d~iDl~~lH~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~G~ir~iGvS~~~~~~l~~~~~~ 225 (339)
+.+.+..++.++ -|-|+||+=. .|. ... ..++.-+.+..+++. -. .-|.|=+++++.++++++.
T Consensus 26 d~~~~~A~~~~~-~GAdiIDIG~--~~~--------~~~--~~ee~~r~v~~i~~~--~~-~piSIDT~~~~v~e~aL~~ 89 (252)
T cd00740 26 DEALDVARQQVE-GGAQILDLNV--DYG--------GLD--GVSAMKWLLNLLATE--PT-VPLMLDSTNWEVIEAGLKC 89 (252)
T ss_pred HHHHHHHHHHHH-CCCCEEEECC--CCC--------CCC--HHHHHHHHHHHHHHh--cC-CcEEeeCCcHHHHHHHHhh
Confidence 566666666654 5999999843 121 011 122333332222221 11 1377778999999999987
Q ss_pred CCCceeEeccccCCCCCCcHHHHHHHHhCCceEEEecc
Q psy15666 226 SKVVPAVNQVEFHPHFLQPQELIDVCNQNKIALQAYAS 263 (339)
Q Consensus 226 ~~~~~~~~q~~~~~~~~~~~~l~~~~~~~gi~v~~~~~ 263 (339)
+.-.+.+|-+....++.....+++.+++.|..++.+..
T Consensus 90 ~~G~~iINsIs~~~~~e~~~~~~~~~~~~~~~vV~m~~ 127 (252)
T cd00740 90 CQGKCVVNSINLEDGEERFLKVARLAKEHGAAVVVLAF 127 (252)
T ss_pred CCCCcEEEeCCCCCCccccHHHHHHHHHhCCCEEEecc
Confidence 32133455444322212236788999999998887654
No 140
>TIGR00290 MJ0570_dom MJ0570-related uncharacterized domain. Proteins with this uncharacterized domain include two apparent ortholog families in the Archaea, one of which is universal among the first four completed archaeal genomes, and YLR143W, a much longer protein from Saccharomyces cerevisiae. The domain comprises the full length of the archaeal proteins and the first third of the yeast protein.
Probab=25.07 E-value=4.7e+02 Score=22.88 Aligned_cols=87 Identities=13% Similarity=0.261 Sum_probs=47.5
Q ss_pred HHHHHHHHhCCceEEEecchhH-----HHHHHHHHcC---------CCHHHHHHHHHhhCCcE-EecCCCCHHHHHHhhc
Q psy15666 245 QELIDVCNQNKIALQAYASLGS-----TSTQIAKVHS---------VSPAQVLLRWALQENFL-IIPKSVTPERIVQNIA 309 (339)
Q Consensus 245 ~~l~~~~~~~gi~v~~~~~l~~-----~l~~la~~~~---------~s~~~~al~~~l~~~~~-~i~g~~~~~~l~enl~ 309 (339)
.++.+..++.|+..++++-+.. .+.++|++.| .+..+++-.++ ..|+- +|++++ ...|.+..-
T Consensus 75 e~l~~~l~~~gv~~vv~GdI~s~~qr~~~e~v~~~lgl~~~~PLW~~~~~~ll~e~i-~~G~~aiIv~v~-a~gL~~~~L 152 (223)
T TIGR00290 75 EELKGILHTLDVEAVVFGAIYSEYQKTRIERVCRELGLKSFAPLWHRDPEKLMEEFV-EEKFEARIIAVA-AEGLDESWL 152 (223)
T ss_pred HHHHHHHHHcCCCEEEECCcccHHHHHHHHHHHHhcCCEEeccccCCCHHHHHHHHH-HcCCeEEEEEEe-cCCCChHHc
Confidence 4455555555666666665543 5556666654 45666555444 66754 444433 223432211
Q ss_pred CCCCCCHHHHHHHhcCCCCCCcccCCC
Q psy15666 310 LDFELSPEEVKAIENIPNKQKYCWNPD 336 (339)
Q Consensus 310 ~~~~L~~~~~~~l~~~~~~~r~~~~~~ 336 (339)
.-.++++.++.|.++.+. ...||+
T Consensus 153 -Gr~i~~e~i~~L~~~~~~--~gvd~~ 176 (223)
T TIGR00290 153 -GRRIDRKMIDELKKLNEK--YGIHPA 176 (223)
T ss_pred -CCcccHHHHHHHHHHHhc--cCCCcc
Confidence 346888888888776543 334444
No 141
>TIGR01496 DHPS dihydropteroate synthase. This model represents dihydropteroate synthase, the enzyme that catalyzes the second to last step in folic acid biosynthesis. The gene is usually designated folP (folic acid biosynthsis) or sul (sulfanilamide resistance). This model represents one branch of the family of pterin-binding enzymes (pfam00809) and of a cluster of dihydropteroate synthase and related enzymes (COG0294). Other members of pfam00809 and COG0294 are represented by TIGR00284.
Probab=24.73 E-value=5e+02 Score=23.12 Aligned_cols=101 Identities=15% Similarity=0.207 Sum_probs=58.1
Q ss_pred HHHHHHHHHHHHhcCCCcccEEE-eecCCCCCCCCCCCccc-ccHHHHHHHHHHhhCCCCCCccEEEecCCCHHHHHHHH
Q psy15666 146 DQVKSLVAQTLKDLGTTYLDLFL-IHWPGTFGVDSSSPQQI-SNRHTLWNALTELYNPNNGPLKSIGVSNYTAKHLVNLI 223 (339)
Q Consensus 146 ~~~~~~~~~sL~~L~~d~iDl~~-lH~~~~~~~~~~~~~~~-~~~~~~~~~l~~l~~~~~G~ir~iGvS~~~~~~l~~~~ 223 (339)
+.+.+..++.+ .-|.|+||+-. --+|+. .+-.. +..+.+...++.+++. -.+ -+.+=+++++.+++++
T Consensus 23 ~~~~~~a~~~~-~~GA~iIDIG~~st~p~~------~~i~~~~E~~rl~~~v~~~~~~--~~~-plsiDT~~~~vi~~al 92 (257)
T TIGR01496 23 DKAVAHAERML-EEGADIIDVGGESTRPGA------DRVSPEEELNRVVPVIKALRDQ--PDV-PISVDTYRAEVARAAL 92 (257)
T ss_pred HHHHHHHHHHH-HCCCCEEEECCCCCCCCC------CCCCHHHHHHHHHHHHHHHHhc--CCC-eEEEeCCCHHHHHHHH
Confidence 44444444443 55899999821 111210 11111 0122344555555543 232 3778889999999999
Q ss_pred HcCCCceeEeccccCCCCCCcHHHHHHHHhCCceEEEec
Q psy15666 224 QNSKVVPAVNQVEFHPHFLQPQELIDVCNQNKIALQAYA 262 (339)
Q Consensus 224 ~~~~~~~~~~q~~~~~~~~~~~~l~~~~~~~gi~v~~~~ 262 (339)
+.+ . +.+|-+..-. ..++++.+++.|..++.+.
T Consensus 93 ~~G-~-~iINsis~~~----~~~~~~l~~~~~~~vV~m~ 125 (257)
T TIGR01496 93 EAG-A-DIINDVSGGQ----DPAMLEVAAEYGVPLVLMH 125 (257)
T ss_pred HcC-C-CEEEECCCCC----CchhHHHHHHcCCcEEEEe
Confidence 884 2 3455444322 2578899999999988865
No 142
>PF13518 HTH_28: Helix-turn-helix domain
Probab=24.64 E-value=79 Score=19.86 Aligned_cols=23 Identities=26% Similarity=0.517 Sum_probs=18.9
Q ss_pred HHHHHHHHcCCChhHHHHHHHHhh
Q psy15666 43 TLAQIAKVHSVSPAQVLLRWALQE 66 (339)
Q Consensus 43 ~l~~ia~~~~~s~aqv~l~w~l~~ 66 (339)
.+.++|+++|+|..+| -+|+-..
T Consensus 14 s~~~~a~~~gis~~tv-~~w~~~y 36 (52)
T PF13518_consen 14 SVREIAREFGISRSTV-YRWIKRY 36 (52)
T ss_pred CHHHHHHHHCCCHhHH-HHHHHHH
Confidence 5788999999999886 7888654
No 143
>TIGR03151 enACPred_II putative enoyl-(acyl-carrier-protein) reductase II. This oxidoreductase of the 2-nitropropane dioxygenase family (pfam03060) is commonly found in apparent operons with genes involved in fatty acid biosynthesis. Furthermore, this genomic context generally includes the fabG 3-oxoacyl-[ACP] reductase and lacks the fabI enoyl-[ACP] reductase.
Probab=24.22 E-value=5.1e+02 Score=23.75 Aligned_cols=56 Identities=21% Similarity=0.211 Sum_probs=31.9
Q ss_pred CCccEEEecCCCHHHHHHHHHcC----CCceeEeccccCCCCCCcHHHHHHHHhCCceEEEec
Q psy15666 204 GPLKSIGVSNYTAKHLVNLIQNS----KVVPAVNQVEFHPHFLQPQELIDVCNQNKIALQAYA 262 (339)
Q Consensus 204 G~ir~iGvS~~~~~~l~~~~~~~----~~~~~~~q~~~~~~~~~~~~l~~~~~~~gi~v~~~~ 262 (339)
|-+..+|....+++.+++.++.. .-++-++-+.. .+...+.++.+.+.++.++..+
T Consensus 35 GglG~l~~~~~~~~~l~~~i~~~~~~t~~pfgvn~~~~---~~~~~~~~~~~~~~~v~~v~~~ 94 (307)
T TIGR03151 35 GGLGIIGAGNAPPDVVRKEIRKVKELTDKPFGVNIMLL---SPFVDELVDLVIEEKVPVVTTG 94 (307)
T ss_pred CCcceeccccCCHHHHHHHHHHHHHhcCCCcEEeeecC---CCCHHHHHHHHHhCCCCEEEEc
Confidence 88888887777777665544433 11222221111 1222567777778888877653
No 144
>COG2179 Predicted hydrolase of the HAD superfamily [General function prediction only]
Probab=24.15 E-value=4.3e+02 Score=22.14 Aligned_cols=64 Identities=23% Similarity=0.280 Sum_probs=44.1
Q ss_pred HHHHHHHHHHhhCCCCCCccEEEecCCCHHHHHHHHHcCCCceeEeccccCCCCCCcHHHHHHHHhCCceEE--Eecchh
Q psy15666 188 RHTLWNALTELYNPNNGPLKSIGVSNYTAKHLVNLIQNSKVVPAVNQVEFHPHFLQPQELIDVCNQNKIALQ--AYASLG 265 (339)
Q Consensus 188 ~~~~~~~l~~l~~~~~G~ir~iGvS~~~~~~l~~~~~~~~~~~~~~q~~~~~~~~~~~~l~~~~~~~gi~v~--~~~~l~ 265 (339)
..++.+.++++++. | ++-+=+||.+...+..+.+..++ .++ |.+|++
T Consensus 48 tpe~~~W~~e~k~~--g-i~v~vvSNn~e~RV~~~~~~l~v----------------------------~fi~~A~KP~~ 96 (175)
T COG2179 48 TPELRAWLAELKEA--G-IKVVVVSNNKESRVARAAEKLGV----------------------------PFIYRAKKPFG 96 (175)
T ss_pred CHHHHHHHHHHHhc--C-CEEEEEeCCCHHHHHhhhhhcCC----------------------------ceeecccCccH
Confidence 67888999999988 7 46666788776666555554433 322 456777
Q ss_pred HHHHHHHHHcCCCHHHH
Q psy15666 266 STSTQIAKVHSVSPAQV 282 (339)
Q Consensus 266 ~~l~~la~~~~~s~~~~ 282 (339)
..+++..++.+.++.++
T Consensus 97 ~~fr~Al~~m~l~~~~v 113 (175)
T COG2179 97 RAFRRALKEMNLPPEEV 113 (175)
T ss_pred HHHHHHHHHcCCChhHE
Confidence 77777777777777663
No 145
>COG1168 MalY Bifunctional PLP-dependent enzyme with beta-cystathionase and maltose regulon repressor activities [Amino acid transport and metabolism]
Probab=23.96 E-value=2e+02 Score=27.37 Aligned_cols=46 Identities=9% Similarity=0.130 Sum_probs=30.1
Q ss_pred CHHHHHHHHHcCCCceeEeccccCCCCCC----c-HHHHHHHHhCCceEEE
Q psy15666 215 TAKHLVNLIQNSKVVPAVNQVEFHPHFLQ----P-QELIDVCNQNKIALQA 260 (339)
Q Consensus 215 ~~~~l~~~~~~~~~~~~~~q~~~~~~~~~----~-~~l~~~~~~~gi~v~~ 260 (339)
+-+++++.+....++.-+.-.|.||.-+- + ..+.+.|++||+.|++
T Consensus 146 D~~~LE~~~~~~~vkl~iLCnPHNP~Grvwt~eeL~~i~elc~kh~v~VIS 196 (388)
T COG1168 146 DFDALEKAFVDERVKLFILCNPHNPTGRVWTKEELRKIAELCLRHGVRVIS 196 (388)
T ss_pred cHHHHHHHHhcCCccEEEEeCCCCCCCccccHHHHHHHHHHHHHcCCEEEe
Confidence 55667766666655555555555554432 1 5788889999988885
No 146
>PRK08609 hypothetical protein; Provisional
Probab=23.94 E-value=7.6e+02 Score=24.96 Aligned_cols=21 Identities=10% Similarity=0.120 Sum_probs=12.5
Q ss_pred HHHHHHHHHHhhCCCCCCccEEE
Q psy15666 188 RHTLWNALTELYNPNNGPLKSIG 210 (339)
Q Consensus 188 ~~~~~~~l~~l~~~~~G~ir~iG 210 (339)
..++++.+.++.+. |.+.-||
T Consensus 444 ~~~~~~~l~~a~~~--~~~dILa 464 (570)
T PRK08609 444 EEEIMKRLENACRN--PYVRLIA 464 (570)
T ss_pred HHHHHHHHHHHhcC--CCceEEE
Confidence 34556666666666 6665555
No 147
>PF13380 CoA_binding_2: CoA binding domain; PDB: 3FF4_A 2D5A_A 2D59_A 2E6U_X 1IUL_A 1IUK_A 1Y81_A 2DUW_A.
Probab=23.67 E-value=3.2e+02 Score=20.88 Aligned_cols=21 Identities=29% Similarity=0.450 Sum_probs=15.5
Q ss_pred HHHHHHHHhCCceEEEecchh
Q psy15666 245 QELIDVCNQNKIALQAYASLG 265 (339)
Q Consensus 245 ~~l~~~~~~~gi~v~~~~~l~ 265 (339)
.+++++|+++|+.++.-..++
T Consensus 92 ~~~~~~a~~~gi~vigp~C~g 112 (116)
T PF13380_consen 92 EELIEAAREAGIRVIGPNCLG 112 (116)
T ss_dssp HHHHHHHHHTT-EEEESS-HH
T ss_pred HHHHHHHHHcCCEEEeCCcce
Confidence 789999999999998655443
No 148
>PRK14477 bifunctional nitrogenase molybdenum-cofactor biosynthesis protein NifE/NifN; Provisional
Probab=23.62 E-value=9.5e+02 Score=25.96 Aligned_cols=118 Identities=14% Similarity=0.172 Sum_probs=66.8
Q ss_pred ccccCHHHHHHHHHhhcccCCCCCCceEEEeccCCCCCCCHHHHHHHHHHHHHhc-CCCcccEEEeecCCCCCCCCCCCc
Q psy15666 105 QEYGNEASIGRALKVLLPKFNLKREDIFITSKLSPQYNGNADQVKSLVAQTLKDL-GTTYLDLFLIHWPGTFGVDSSSPQ 183 (339)
Q Consensus 105 ~~y~~E~~lG~al~~~~~~~~~~R~~~~i~tK~~~~~~~~~~~~~~~~~~sL~~L-~~d~iDl~~lH~~~~~~~~~~~~~ 183 (339)
..||.|+.+-++|++....+. .+=++|.|-+.+.-.+ +++...+++.-++. ....+.++.++.|++.+.
T Consensus 551 ~VfGG~~~L~~~I~~~~~~~~--p~~I~V~tTc~~eiIG--DDi~~vi~~~~~~~~~~~~~pvi~v~tpgF~Gs------ 620 (917)
T PRK14477 551 AIFGGWENLKQGILRVIEKFK--PKVIGVMTTGLTETMG--DDVRSAIVQFREEHPELDDVPVVWASTPDYCGS------ 620 (917)
T ss_pred eEECcHHHHHHHHHHHHHhcC--CCEEEEECCchHhhhh--cCHHHHHHHHHhhccccCCCeEEEeeCCCCccC------
Confidence 477888888888887644432 3457777766543222 23444444433331 112468999999976431
Q ss_pred ccccHHHHHHHHH-HhhC---CCCCCccEEEecCC---CHHHHHHHHHcCCCceeE
Q psy15666 184 QISNRHTLWNALT-ELYN---PNNGPLKSIGVSNY---TAKHLVNLIQNSKVVPAV 232 (339)
Q Consensus 184 ~~~~~~~~~~~l~-~l~~---~~~G~ir~iGvS~~---~~~~l~~~~~~~~~~~~~ 232 (339)
.......+++++- .+.+ .++++|.-||-++. +.+.+.++++..++.+.+
T Consensus 621 ~~~G~~~a~~aiv~~~~~~~~~~~~~VNli~~~~~~~gD~~eik~lL~~~Gl~v~~ 676 (917)
T PRK14477 621 LQEGYAAAVEAIVATLPEPGERIPGQVNILPGAHLTPADVEEIKEIVEAFGLDPVV 676 (917)
T ss_pred HHHHHHHHHHHHHHHhccccCCCCCcEEEeCCCCCChhhHHHHHHHHHHcCCceEE
Confidence 1122344444332 2321 22388999976654 346778888888776543
No 149
>cd03322 rpsA The starvation sensing protein RpsA from E.coli and its homologs are lactonizing enzymes whose putative targets are homoserine lactone (HSL)-derivative. They are part of the mandelate racemase (MR)-like subfamily of the enolase superfamily. Enzymes of this subfamily share three conserved carboxylate ligands for the essential divalent metal ion (usually Mg2+), two aspartates and a glutamate, and catalytic residues, a partially conserved Lys-X-Lys motif and a conserved histidine-aspartate dyad.
Probab=23.47 E-value=3.5e+02 Score=25.43 Aligned_cols=68 Identities=10% Similarity=0.028 Sum_probs=48.9
Q ss_pred HHHHHHhhCCCCCCcc-EEEecCCCHHHHHHHHHcCCCceeEeccccCCCC--CCcHHHHHHHHhCCceEEEecc
Q psy15666 192 WNALTELYNPNNGPLK-SIGVSNYTAKHLVNLIQNSKVVPAVNQVEFHPHF--LQPQELIDVCNQNKIALQAYAS 263 (339)
Q Consensus 192 ~~~l~~l~~~~~G~ir-~iGvS~~~~~~l~~~~~~~~~~~~~~q~~~~~~~--~~~~~l~~~~~~~gi~v~~~~~ 263 (339)
++.+.+|++. ..+. ..|=|.++...+..+++...+ +++|......- .+..++.+.|+++|+.++..+.
T Consensus 203 ~~~~~~L~~~--~~~pia~gE~~~~~~~~~~~i~~~a~--di~~~d~~~~GGit~~~~ia~~A~~~gi~~~~h~~ 273 (361)
T cd03322 203 QEAFRLIRQH--TATPLAVGEVFNSIWDWQNLIQERLI--DYIRTTVSHAGGITPARKIADLASLYGVRTGWHGP 273 (361)
T ss_pred HHHHHHHHhc--CCCCEEeccCCcCHHHHHHHHHhCCC--CEEecCccccCCHHHHHHHHHHHHHcCCeeeccCC
Confidence 5667777777 6555 778888899999999887643 66666654321 1126899999999999987543
No 150
>TIGR00735 hisF imidazoleglycerol phosphate synthase, cyclase subunit.
Probab=23.28 E-value=5.2e+02 Score=22.79 Aligned_cols=94 Identities=14% Similarity=0.118 Sum_probs=49.5
Q ss_pred HHHHHHHhcCCCcccEEEeecCCCCCCCCCCCcccccHHHHHHHHHHhhCCCCCCccEEEecC-CCHHHHHHHHHcCCCc
Q psy15666 151 LVAQTLKDLGTTYLDLFLIHWPGTFGVDSSSPQQISNRHTLWNALTELYNPNNGPLKSIGVSN-YTAKHLVNLIQNSKVV 229 (339)
Q Consensus 151 ~~~~sL~~L~~d~iDl~~lH~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~G~ir~iGvS~-~~~~~l~~~~~~~~~~ 229 (339)
.+-+-|..+|. |.+.+|..+..+.. .. --|+.+.++++. -.+.-|+... .+++.+.++++..++.
T Consensus 159 ~~~~~l~~~G~---~~iivt~i~~~g~~----~g-----~~~~~~~~i~~~--~~ipvia~GGi~s~~di~~~~~~g~~d 224 (254)
T TIGR00735 159 EWAKEVEKLGA---GEILLTSMDKDGTK----SG-----YDLELTKAVSEA--VKIPVIASGGAGKPEHFYEAFTKGKAD 224 (254)
T ss_pred HHHHHHHHcCC---CEEEEeCcCcccCC----CC-----CCHHHHHHHHHh--CCCCEEEeCCCCCHHHHHHHHHcCCcc
Confidence 34445566665 56666765322111 00 113344444544 4455565554 4568888888876454
Q ss_pred eeEeccccCCCCCCcHHHHHHHHhCCceE
Q psy15666 230 PAVNQVEFHPHFLQPQELIDVCNQNKIAL 258 (339)
Q Consensus 230 ~~~~q~~~~~~~~~~~~l~~~~~~~gi~v 258 (339)
-.++-.-++.......++...|+++|+.+
T Consensus 225 gv~~g~a~~~~~~~~~~~~~~~~~~gi~~ 253 (254)
T TIGR00735 225 AALAASVFHYREITIGEVKEYLAERGIPV 253 (254)
T ss_pred eeeEhHHHhCCCCCHHHHHHHHHHCCCcc
Confidence 33322222222222368899999999864
No 151
>PF02817 E3_binding: e3 binding domain; InterPro: IPR004167 A small domain of the E2 subunit of 2-oxo-acid dehydrogenases that is responsible for the binding of the E3 subunit. Proteins containing this domain include the branched-chain alpha-keto acid dehydrogenase complex of bacteria, which catalyses the overall conversion of alpha-keto acids to acyl-CoA and carbon dioxide; and the E-3 binding protein of eukaryotic pyruvate dehydrogenase.; GO: 0016746 transferase activity, transferring acyl groups, 0008152 metabolic process; PDB: 1BBL_A 1W4H_A 1BAL_A 2WXC_A 2BTH_A 2BTG_A 2CYU_A 2EQ7_C 2EQ8_C 3RNM_E ....
Probab=23.19 E-value=89 Score=19.09 Aligned_cols=22 Identities=18% Similarity=0.185 Sum_probs=15.7
Q ss_pred CCChHHHHHHHHHcCCChhHHH
Q psy15666 38 LIADSTLAQIAKVHSVSPAQVL 59 (339)
Q Consensus 38 ~~~~~~l~~ia~~~~~s~aqv~ 59 (339)
++.-|..+.+|+++|+++++|.
T Consensus 3 i~asP~ar~la~e~gidl~~v~ 24 (39)
T PF02817_consen 3 IKASPAARKLAAELGIDLSQVK 24 (39)
T ss_dssp CCCSHHHHHHHHHTT--GGGSS
T ss_pred cccCHHHHHHHHHcCCCccccc
Confidence 4556888999999999988754
No 152
>PRK14457 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=23.16 E-value=6.3e+02 Score=23.70 Aligned_cols=147 Identities=17% Similarity=0.181 Sum_probs=79.9
Q ss_pred HHHHHHHHHhhcccCCCCCCceEEEeccCCCCCCCHHHHHHHHHHHHHhcC-CCcccEEEeecCCCCC---CCCCCCccc
Q psy15666 110 EASIGRALKVLLPKFNLKREDIFITSKLSPQYNGNADQVKSLVAQTLKDLG-TTYLDLFLIHWPGTFG---VDSSSPQQI 185 (339)
Q Consensus 110 E~~lG~al~~~~~~~~~~R~~~~i~tK~~~~~~~~~~~~~~~~~~sL~~L~-~d~iDl~~lH~~~~~~---~~~~~~~~~ 185 (339)
-..+-++++......++....+.|+| +|.. +.+++-.+.-+++|| .+....+-||.++..- .-+.....+
T Consensus 164 ~~~v~~~i~~l~~~~~i~~r~itvST-~G~~-----~~i~~L~~~~~~~~~~~~~~laiSLha~~~e~r~~i~p~~~~~~ 237 (345)
T PRK14457 164 IDEVLAAIRCLNQDLGIGQRRITVST-VGVP-----KTIPQLAELAFQRLGRLQFTLAVSLHAPNQKLRETLIPSAKNYP 237 (345)
T ss_pred HHHHHHHHHHHhcccCCccCceEEEC-CCch-----hhHHHHHhhhhhhcccCceEEEEEeCCCCHHHHHHhcCCccCCC
Confidence 44566677655333355555777877 3221 334444444444443 2344678899883210 000011122
Q ss_pred ccHHHHHHHHHHh-hCCCCC---CccEEEecC--CCHHHHHHHHHcC-CCceeEeccccCCCCCC----c-----HHHHH
Q psy15666 186 SNRHTLWNALTEL-YNPNNG---PLKSIGVSN--YTAKHLVNLIQNS-KVVPAVNQVEFHPHFLQ----P-----QELID 249 (339)
Q Consensus 186 ~~~~~~~~~l~~l-~~~~~G---~ir~iGvS~--~~~~~l~~~~~~~-~~~~~~~q~~~~~~~~~----~-----~~l~~ 249 (339)
++++++++.+. .+. | .++++=|.+ .+.+.++++.+.. ++...++-++||+.... + ....+
T Consensus 238 --l~~l~~~~~~y~~~~--gr~I~iey~LIpGvNDs~e~a~~La~~l~~l~~~VnLIPynp~~~~~~~~ps~e~i~~f~~ 313 (345)
T PRK14457 238 --IENLLEDCRHYVAIT--GRRVSFEYILLGGVNDLPEHAEELANLLRGFQSHVNLIPYNPIDEVEFQRPSPKRIQAFQR 313 (345)
T ss_pred --HHHHHHHHHHHHHHh--CCEEEEEEEEECCcCCCHHHHHHHHHHHhcCCCeEEEecCCCCCCCCCCCCCHHHHHHHHH
Confidence 66777666553 344 5 355665554 4456665555433 33456788888876432 1 34566
Q ss_pred HHHhCCceEEEecchhH
Q psy15666 250 VCNQNKIALQAYASLGS 266 (339)
Q Consensus 250 ~~~~~gi~v~~~~~l~~ 266 (339)
..+++|+.+......|.
T Consensus 314 ~L~~~Gi~vtvR~~~G~ 330 (345)
T PRK14457 314 VLEQRGVAVSVRASRGL 330 (345)
T ss_pred HHHHCCCeEEEeCCCCC
Confidence 67788998888777764
No 153
>PF01476 LysM: LysM domain; InterPro: IPR018392 This domain is about 40 residues long and is found in a variety of enzymes involved in bacterial cell wall degradation []. This domain may have a general peptidoglycan binding function.; GO: 0016998 cell wall macromolecule catabolic process; PDB: 2DJP_A 3ZQD_A 1Y7M_B 4A52_A 2L9Y_A 1E0G_A.
Probab=22.98 E-value=80 Score=19.08 Aligned_cols=20 Identities=30% Similarity=0.323 Sum_probs=14.0
Q ss_pred ChHHHHHHHHHcCCChhHHH
Q psy15666 40 ADSTLAQIAKVHSVSPAQVL 59 (339)
Q Consensus 40 ~~~~l~~ia~~~~~s~aqv~ 59 (339)
..+.+..||+++|.+..++.
T Consensus 5 ~gDtl~~IA~~~~~~~~~l~ 24 (44)
T PF01476_consen 5 PGDTLWSIAKRYGISVDELM 24 (44)
T ss_dssp TT--HHHHHHHTTS-HHHHH
T ss_pred cCCcHHHHHhhhhhhHhHHH
Confidence 34678999999999988854
No 154
>PRK00730 rnpA ribonuclease P; Reviewed
Probab=22.27 E-value=3.3e+02 Score=21.90 Aligned_cols=44 Identities=9% Similarity=0.164 Sum_probs=32.3
Q ss_pred CCCceEEEeccCCCCCCCHHHHHHHHHHHHHhcC--CCcccEEEeecC
Q psy15666 127 KREDIFITSKLSPQYNGNADQVKSLVAQTLKDLG--TTYLDLFLIHWP 172 (339)
Q Consensus 127 ~R~~~~i~tK~~~~~~~~~~~~~~~~~~sL~~L~--~d~iDl~~lH~~ 172 (339)
+|=-+.|+-|++.. ... ..+++.+.++++.+. ....|++++...
T Consensus 46 ~RlG~sVSKKvg~A-V~R-NRiKR~lREafR~~~~~l~g~DiVviaR~ 91 (138)
T PRK00730 46 CKVGITVSKKFGKA-HQR-NRFKRIVREAFRHVRHNLPGCQIVVSPKG 91 (138)
T ss_pred ceEEEEEecccccc-hhH-HHHHHHHHHHHHHhhcccCCceEEEEecc
Confidence 46668888888753 333 778888888888763 356899999987
No 155
>PRK06552 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=22.25 E-value=1.9e+02 Score=25.09 Aligned_cols=61 Identities=21% Similarity=0.186 Sum_probs=0.0
Q ss_pred HHHHHHHHhhCCCCCCcc---EEEecC-CCHHHHHHHHHcCCCceeEeccccCCCCCCcHHHHHHHHhCCceEEE
Q psy15666 190 TLWNALTELYNPNNGPLK---SIGVSN-YTAKHLVNLIQNSKVVPAVNQVEFHPHFLQPQELIDVCNQNKIALQA 260 (339)
Q Consensus 190 ~~~~~l~~l~~~~~G~ir---~iGvS~-~~~~~l~~~~~~~~~~~~~~q~~~~~~~~~~~~l~~~~~~~gi~v~~ 260 (339)
...+.+++++++ -.-+ .||..+ .+.++++.+++.+ .++-.+|.... +++++|+++|+.++.
T Consensus 50 ~a~~~i~~l~~~--~~~~p~~~vGaGTV~~~~~~~~a~~aG------A~FivsP~~~~--~v~~~~~~~~i~~iP 114 (213)
T PRK06552 50 FASEVIKELVEL--YKDDPEVLIGAGTVLDAVTARLAILAG------AQFIVSPSFNR--ETAKICNLYQIPYLP 114 (213)
T ss_pred cHHHHHHHHHHH--cCCCCCeEEeeeeCCCHHHHHHHHHcC------CCEEECCCCCH--HHHHHHHHcCCCEEC
No 156
>TIGR03822 AblA_like_2 lysine-2,3-aminomutase-related protein. Members of this protein form a distinctive clade, homologous to lysine-2,3-aminomutase (of Bacillus, Clostridium, and methanogenic archaea) and likely similar in function. Members of this family are found in Rhodopseudomonas, Caulobacter crescentus, Bradyrhizobium, etc.
Probab=22.15 E-value=6.3e+02 Score=23.30 Aligned_cols=74 Identities=9% Similarity=0.009 Sum_probs=41.9
Q ss_pred HHHHHHHHHHhhCCCCCCccEEEecC---------CCHHHHHHHHHcCCCceeEeccccCCC---CCCcHHHHHHHHhCC
Q psy15666 188 RHTLWNALTELYNPNNGPLKSIGVSN---------YTAKHLVNLIQNSKVVPAVNQVEFHPH---FLQPQELIDVCNQNK 255 (339)
Q Consensus 188 ~~~~~~~l~~l~~~~~G~ir~iGvS~---------~~~~~l~~~~~~~~~~~~~~q~~~~~~---~~~~~~l~~~~~~~g 255 (339)
...+.+.++.+++- |.++.+.+.+ .+.+.++.+.+. +.. ..+-+..+-. .......+..+++.|
T Consensus 152 ~~~L~~ll~~l~~i--~~v~~iri~Tr~~v~~p~rit~ell~~L~~~-g~~-v~i~l~~~h~~el~~~~~~ai~~L~~~G 227 (321)
T TIGR03822 152 PRRLGDIMARLAAI--DHVKIVRFHTRVPVADPARVTPALIAALKTS-GKT-VYVALHANHARELTAEARAACARLIDAG 227 (321)
T ss_pred HHHHHHHHHHHHhC--CCccEEEEeCCCcccChhhcCHHHHHHHHHc-CCc-EEEEecCCChhhcCHHHHHHHHHHHHcC
Confidence 34566667777777 8887666644 233334444443 322 2333333211 111256778888999
Q ss_pred ceEEEecchh
Q psy15666 256 IALQAYASLG 265 (339)
Q Consensus 256 i~v~~~~~l~ 265 (339)
|.+...+++.
T Consensus 228 i~v~~q~vLl 237 (321)
T TIGR03822 228 IPMVSQSVLL 237 (321)
T ss_pred CEEEEEeeEe
Confidence 9998888775
No 157
>COG2102 Predicted ATPases of PP-loop superfamily [General function prediction only]
Probab=22.14 E-value=2e+02 Score=25.19 Aligned_cols=84 Identities=17% Similarity=0.214 Sum_probs=44.4
Q ss_pred HHHHHHHHHHhhCCCCCCccEEEecCCCHHHHHHHHHcCCCceeEeccccCCCCCC-cHHHHHHHHhCCceEEEecchhH
Q psy15666 188 RHTLWNALTELYNPNNGPLKSIGVSNYTAKHLVNLIQNSKVVPAVNQVEFHPHFLQ-PQELIDVCNQNKIALQAYASLGS 266 (339)
Q Consensus 188 ~~~~~~~l~~l~~~~~G~ir~iGvS~~~~~~l~~~~~~~~~~~~~~q~~~~~~~~~-~~~l~~~~~~~gi~v~~~~~l~~ 266 (339)
.++..+++.+++-+ |.+--==.|.+....++.+.+..+.++ |.|+... +.+++...-+.|+.++.-+.-+.
T Consensus 75 ve~L~~~l~~l~~d--~iv~GaI~s~yqk~rve~lc~~lGl~~------~~PLWg~d~~ell~e~~~~Gf~~~Iv~Vsa~ 146 (223)
T COG2102 75 VEELKEALRRLKVD--GIVAGAIASEYQKERVERLCEELGLKV------YAPLWGRDPEELLEEMVEAGFEAIIVAVSAE 146 (223)
T ss_pred HHHHHHHHHhCccc--EEEEchhhhHHHHHHHHHHHHHhCCEE------eecccCCCHHHHHHHHHHcCCeEEEEEEecc
Confidence 55556666666544 322111123344455666666655542 4455554 36677766677665444333222
Q ss_pred -----------------HHHHHHHHcCCCH
Q psy15666 267 -----------------TSTQIAKVHSVSP 279 (339)
Q Consensus 267 -----------------~l~~la~~~~~s~ 279 (339)
.+..+.++||+.|
T Consensus 147 gL~~~~lGr~i~~~~~e~l~~l~~~ygi~~ 176 (223)
T COG2102 147 GLDESWLGRRIDREFLEELKSLNRRYGIHP 176 (223)
T ss_pred CCChHHhCCccCHHHHHHHHHHHHhcCCCc
Confidence 5667777777766
No 158
>cd00739 DHPS DHPS subgroup of Pterin binding enzymes. DHPS (dihydropteroate synthase), a functional homodimer, catalyzes the condensation of p-aminobenzoic acid (pABA) in the de novo biosynthesis of folate, which is an essential cofactor in both nucleic acid and protein biosynthesis. Prokaryotes (and some lower eukaryotes) must synthesize folate de novo, while higher eukaryotes are able to utilize dietary folate and therefore lack DHPS. Sulfonamide drugs, which are substrate analogs of pABA, target DHPS.
Probab=21.99 E-value=5.7e+02 Score=22.78 Aligned_cols=93 Identities=16% Similarity=0.142 Sum_probs=55.8
Q ss_pred hcCCCcccEEE-eecCCCCCCCCCCCcccccHHHHHHHHHHhhCCCCCCccEEEecCCCHHHHHHHHHcCCCceeEeccc
Q psy15666 158 DLGTTYLDLFL-IHWPGTFGVDSSSPQQISNRHTLWNALTELYNPNNGPLKSIGVSNYTAKHLVNLIQNSKVVPAVNQVE 236 (339)
Q Consensus 158 ~L~~d~iDl~~-lH~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~G~ir~iGvS~~~~~~l~~~~~~~~~~~~~~q~~ 236 (339)
+-|-|+||+-. =-+|+.... ++. +.++.+...++.+++. -.+- +.|=+++++.++++++.+ .+.+|-+.
T Consensus 35 ~~GAdiIDIG~~st~p~~~~i---~~~--~E~~rl~~~v~~i~~~--~~~p-lSIDT~~~~v~e~al~~G--~~iINdis 104 (257)
T cd00739 35 AEGADIIDIGGESTRPGADPV---SVE--EELERVIPVLEALRGE--LDVL-ISVDTFRAEVARAALEAG--ADIINDVS 104 (257)
T ss_pred HCCCCEEEECCCcCCCCCCCC---CHH--HHHHHHHHHHHHHHhc--CCCc-EEEeCCCHHHHHHHHHhC--CCEEEeCC
Confidence 55889999843 222321100 111 1133444455666654 3443 788889999999999885 23444333
Q ss_pred cCCCCCCcHHHHHHHHhCCceEEEecc
Q psy15666 237 FHPHFLQPQELIDVCNQNKIALQAYAS 263 (339)
Q Consensus 237 ~~~~~~~~~~l~~~~~~~gi~v~~~~~ 263 (339)
..... .++++.++++|..++.+..
T Consensus 105 --g~~~~-~~~~~l~~~~~~~vV~m~~ 128 (257)
T cd00739 105 --GGSDD-PAMLEVAAEYGAPLVLMHM 128 (257)
T ss_pred --CCCCC-hHHHHHHHHcCCCEEEECC
Confidence 32222 6789999999999998653
No 159
>cd00956 Transaldolase_FSA Transaldolase-like fructose-6-phosphate aldolases (FSA) found in bacteria and archaea, which are member of the MipB/TalC subfamily of class I aldolases. FSA catalyze an aldol cleavage of fructose 6-phosphate and do not utilize fructose, fructose 1-phosphate, fructose 1,6-phosphate, or dihydroxyacetone phosphate. The enzymes belong to the transaldolase family that serves in transfer reactions in the pentose phosphate cycle, and are more distantly related to fructose 1,6-bisphosphate aldolase.
Probab=21.83 E-value=5.2e+02 Score=22.25 Aligned_cols=44 Identities=11% Similarity=0.243 Sum_probs=32.5
Q ss_pred HHHHHHhhCCc---EEecCCCCHHHHHHhhcC--C-CCCCHHHHHHHhcC
Q psy15666 282 VLLRWALQENF---LIIPKSVTPERIVQNIAL--D-FELSPEEVKAIENI 325 (339)
Q Consensus 282 ~al~~~l~~~~---~~i~g~~~~~~l~enl~~--~-~~L~~~~~~~l~~~ 325 (339)
-+.+++..++. +..+|.+++.|+.+.+.+ + ..++++.+++|-..
T Consensus 146 ~i~~~~~~~~~~tkil~As~r~~~ei~~a~~~Gad~vTv~~~vl~~l~~~ 195 (211)
T cd00956 146 EIRTIFDNYGFDTKILAASIRNPQHVIEAALAGADAITLPPDVLEQLLKH 195 (211)
T ss_pred HHHHHHHHcCCCceEEecccCCHHHHHHHHHcCCCEEEeCHHHHHHHhcC
Confidence 35566666653 378899999999997765 3 58898888887654
No 160
>PF01402 RHH_1: Ribbon-helix-helix protein, copG family; InterPro: IPR002145 CopG, also known as RepA, is responsible for the regulation of plasmid copy number. It binds to the repAB promoter and controls synthesis of the plasmid replication initiator protein RepB. Many bacterial transcription regulation proteins bind DNA through a 'helix-turn-helix' motif, nevertheless CopG displays a fully defined HTH-motif structure that is involved not in DNA-binding, but in the maintenance of the intrinsic dimeric functional structure and cooperativity [, ].; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent; PDB: 2BJ3_B 2BJ8_A 2BJ1_A 2BJ9_A 2BJ7_B 1EA4_L 2CPG_C 1B01_B 2BA3_A 2K9I_B ....
Probab=21.67 E-value=98 Score=18.29 Aligned_cols=18 Identities=22% Similarity=0.318 Sum_probs=15.2
Q ss_pred HHHHHHHHHcCCChhHHH
Q psy15666 42 STLAQIAKVHSVSPAQVL 59 (339)
Q Consensus 42 ~~l~~ia~~~~~s~aqv~ 59 (339)
..|.++|++.|.|.+++.
T Consensus 12 ~~l~~~a~~~g~s~s~~i 29 (39)
T PF01402_consen 12 ERLDELAKELGRSRSELI 29 (39)
T ss_dssp HHHHHHHHHHTSSHHHHH
T ss_pred HHHHHHHHHHCcCHHHHH
Confidence 468899999999998854
No 161
>cd03316 MR_like Mandelate racemase (MR)-like subfamily of the enolase superfamily. Enzymes of this subgroup share three conserved carboxylate ligands for the essential divalent metal ion (usually Mg2+), two aspartates and a glutamate, and conserved catalytic residues, a Lys-X-Lys motif and a conserved histidine-aspartate dyad. Members of the MR subgroup are mandelate racemase, D-glucarate/L-idarate dehydratase (GlucD), D-altronate/D-mannonate dehydratase , D-galactonate dehydratase (GalD) , D-gluconate dehydratase (GlcD), and L-rhamnonate dehydratase (RhamD).
Probab=21.60 E-value=5.5e+02 Score=23.82 Aligned_cols=68 Identities=12% Similarity=0.199 Sum_probs=45.1
Q ss_pred HHHHHHhhCCCCCCcc-EEEecCCCHHHHHHHHHcCCCceeEeccccCCCC--CCcHHHHHHHHhCCceEEEecc
Q psy15666 192 WNALTELYNPNNGPLK-SIGVSNYTAKHLVNLIQNSKVVPAVNQVEFHPHF--LQPQELIDVCNQNKIALQAYAS 263 (339)
Q Consensus 192 ~~~l~~l~~~~~G~ir-~iGvS~~~~~~l~~~~~~~~~~~~~~q~~~~~~~--~~~~~l~~~~~~~gi~v~~~~~ 263 (339)
++.+..+++. -.+. ..|=|.++++.+.++++.... +++|+.....- .+..++...|+++|+.++..+.
T Consensus 229 ~~~~~~l~~~--~~ipi~~dE~~~~~~~~~~~i~~~~~--d~v~~k~~~~GGi~~~~~i~~~a~~~g~~~~~~~~ 299 (357)
T cd03316 229 LEGLARLRQA--TSVPIAAGENLYTRWEFRDLLEAGAV--DIIQPDVTKVGGITEAKKIAALAEAHGVRVAPHGA 299 (357)
T ss_pred HHHHHHHHHh--CCCCEEeccccccHHHHHHHHHhCCC--CEEecCccccCCHHHHHHHHHHHHHcCCeEeccCC
Confidence 4555666665 4444 455566888999999987644 56666544332 1126899999999999876553
No 162
>PF05690 ThiG: Thiazole biosynthesis protein ThiG; InterPro: IPR008867 This family consists of several bacterial thiazole biosynthesis protein G sequences. ThiG, together with ThiF and ThiH, is proposed to be involved in the synthesis of 4-methyl-5-(b-hydroxyethyl)thiazole (THZ) which is an intermediate in the thiazole production pathway [].; GO: 0009228 thiamine biosynthetic process; PDB: 1WV2_B 1TYG_C 1XM3_B 2HTM_C 2YZR_C.
Probab=21.55 E-value=5.8e+02 Score=22.68 Aligned_cols=141 Identities=14% Similarity=0.154 Sum_probs=76.0
Q ss_pred HHHHHHHHHHHHHhcCCCcccEEEeecCCCCCCCCCCCcccccHHHHHHHHHHhhCCCCCCccEEEecCCCHHHHHHHHH
Q psy15666 145 ADQVKSLVAQTLKDLGTTYLDLFLIHWPGTFGVDSSSPQQISNRHTLWNALTELYNPNNGPLKSIGVSNYTAKHLVNLIQ 224 (339)
Q Consensus 145 ~~~~~~~~~~sL~~L~~d~iDl~~lH~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~G~ir~iGvS~~~~~~l~~~~~ 224 (339)
+++..+..+-+.+-+++++|-|=.+..+ .... .+..+++++-+.|+++ |-+ -+=-++-++-..+++.+
T Consensus 75 A~EAv~~A~laRe~~~t~wIKLEVi~D~--------~~L~-PD~~etl~Aae~Lv~e--GF~-VlPY~~~D~v~akrL~d 142 (247)
T PF05690_consen 75 AEEAVRTARLAREAFGTNWIKLEVIGDD--------KTLL-PDPIETLKAAEILVKE--GFV-VLPYCTDDPVLAKRLED 142 (247)
T ss_dssp HHHHHHHHHHHHHTTS-SEEEE--BS-T--------TT---B-HHHHHHHHHHHHHT--T-E-EEEEE-S-HHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCCeEEEEEeCCC--------CCcC-CChhHHHHHHHHHHHC--CCE-EeecCCCCHHHHHHHHH
Confidence 3666667777888889998887666643 1112 3578999999999999 843 33444555555566665
Q ss_pred cCC--CceeEeccccCCCCCCcHHHHHHHHhCCceEEEecchhHHHHHHHHHcCCCHHHHHHHHHhhCCcE----EecCC
Q psy15666 225 NSK--VVPAVNQVEFHPHFLQPQELIDVCNQNKIALQAYASLGSTSTQIAKVHSVSPAQVLLRWALQENFL----IIPKS 298 (339)
Q Consensus 225 ~~~--~~~~~~q~~~~~~~~~~~~l~~~~~~~gi~v~~~~~l~~~l~~la~~~~~s~~~~al~~~l~~~~~----~i~g~ 298 (339)
.+- +.|--..+--+..-..+..+-..+.+.++.|+.-.-+| +|++++.+.=+.-..| .|..+
T Consensus 143 ~GcaavMPlgsPIGSg~Gi~n~~~l~~i~~~~~vPvIvDAGiG------------~pSdaa~AMElG~daVLvNTAiA~A 210 (247)
T PF05690_consen 143 AGCAAVMPLGSPIGSGRGIQNPYNLRIIIERADVPVIVDAGIG------------TPSDAAQAMELGADAVLVNTAIAKA 210 (247)
T ss_dssp TT-SEBEEBSSSTTT---SSTHHHHHHHHHHGSSSBEEES---------------SHHHHHHHHHTT-SEEEESHHHHTS
T ss_pred CCCCEEEecccccccCcCCCCHHHHHHHHHhcCCcEEEeCCCC------------CHHHHHHHHHcCCceeehhhHHhcc
Confidence 541 12211111111222222344444556678887766665 6777777666655433 55677
Q ss_pred CCHHHHHHhhc
Q psy15666 299 VTPERIVQNIA 309 (339)
Q Consensus 299 ~~~~~l~enl~ 309 (339)
.+|-.+-+.++
T Consensus 211 ~dPv~MA~Af~ 221 (247)
T PF05690_consen 211 KDPVAMARAFK 221 (247)
T ss_dssp SSHHHHHHHHH
T ss_pred CCHHHHHHHHH
Confidence 77777766654
No 163
>PRK13602 putative ribosomal protein L7Ae-like; Provisional
Probab=21.15 E-value=2.1e+02 Score=20.53 Aligned_cols=46 Identities=15% Similarity=0.270 Sum_probs=27.9
Q ss_pred CHHHHHHHHHcCCCceeEeccccCCCCCCcHHHHHHHHhCCceEEEec
Q psy15666 215 TAKHLVNLIQNSKVVPAVNQVEFHPHFLQPQELIDVCNQNKIALQAYA 262 (339)
Q Consensus 215 ~~~~l~~~~~~~~~~~~~~q~~~~~~~~~~~~l~~~~~~~gi~v~~~~ 262 (339)
+..+..+.++....+..++--..+.. . -..+..+|+.++|+++-+.
T Consensus 15 G~~~v~kai~~gkaklViiA~D~~~~-~-~~~i~~~c~~~~Vp~~~~~ 60 (82)
T PRK13602 15 GTKQTVKALKRGSVKEVVVAEDADPR-L-TEKVEALANEKGVPVSKVD 60 (82)
T ss_pred cHHHHHHHHHcCCeeEEEEECCCCHH-H-HHHHHHHHHHcCCCEEEEC
Confidence 34556666666555545444443331 1 1578888999999887765
No 164
>PRK04165 acetyl-CoA decarbonylase/synthase complex subunit gamma; Provisional
Probab=20.90 E-value=6e+02 Score=24.92 Aligned_cols=82 Identities=10% Similarity=0.105 Sum_probs=51.5
Q ss_pred cccEEEeecCCCCCCCCCCCcccccHHHHHHHHHHhhCCCCCCccEEEecCCCHHHHHHHHHcC-CCceeEeccccCCCC
Q psy15666 163 YLDLFLIHWPGTFGVDSSSPQQISNRHTLWNALTELYNPNNGPLKSIGVSNYTAKHLVNLIQNS-KVVPAVNQVEFHPHF 241 (339)
Q Consensus 163 ~iDl~~lH~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~G~ir~iGvS~~~~~~l~~~~~~~-~~~~~~~q~~~~~~~ 241 (339)
..|++-|+.... . .+.+...++.+++. .+. -+-+-+++++.+++.++.+ ...+.++-+...
T Consensus 127 ~AD~IaL~~~s~---------d---p~~v~~~Vk~V~~~-~dv--PLSIDT~dpevleaAleagad~~plI~Sat~d--- 188 (450)
T PRK04165 127 KLDMVALRNASG---------D---PEKFAKAVKKVAET-TDL--PLILCSEDPAVLKAALEVVADRKPLLYAATKE--- 188 (450)
T ss_pred cCCEEEEeCCCC---------C---HHHHHHHHHHHHHh-cCC--CEEEeCCCHHHHHHHHHhcCCCCceEEecCcc---
Confidence 367777777511 1 23344444555442 033 3778889999999999887 445555443321
Q ss_pred CCcHHHHHHHHhCCceEEEecc
Q psy15666 242 LQPQELIDVCNQNKIALQAYAS 263 (339)
Q Consensus 242 ~~~~~l~~~~~~~gi~v~~~~~ 263 (339)
+-..+.+.|+++|..++...+
T Consensus 189 -N~~~m~~la~~yg~pvVv~~~ 209 (450)
T PRK04165 189 -NYEEMAELAKEYNCPLVVKAP 209 (450)
T ss_pred -hHHHHHHHHHHcCCcEEEEch
Confidence 116788889999999888775
No 165
>TIGR03597 GTPase_YqeH ribosome biogenesis GTPase YqeH. This family describes YqeH, a member of a larger family of GTPases involved in ribosome biogenesis. Like YqlF, it shows a cyclical permutation relative to GTPases EngA (in which the GTPase domain is duplicated), Era, and others. Members of this protein family are found in a relatively small number of bacterial species, including Bacillus subtilis but not Escherichia coli.
Probab=20.84 E-value=7e+02 Score=23.39 Aligned_cols=82 Identities=17% Similarity=0.264 Sum_probs=54.9
Q ss_pred CCceEEEeccCCC--CCCCHHHHHHHHHHHHHhcCCCcccEEEeecCCCCCCCCCCCcccccHHHHHHHHHHhhCCCCCC
Q psy15666 128 REDIFITSKLSPQ--YNGNADQVKSLVAQTLKDLGTTYLDLFLIHWPGTFGVDSSSPQQISNRHTLWNALTELYNPNNGP 205 (339)
Q Consensus 128 R~~~~i~tK~~~~--~~~~~~~~~~~~~~sL~~L~~d~iDl~~lH~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~G~ 205 (339)
+.-++|.+|+--. .... +.+.+-+.+.++.+|....|++.+-.- .....+++++.+.++.+. +.
T Consensus 91 ~piilV~NK~DLl~k~~~~-~~~~~~l~~~~k~~g~~~~~i~~vSAk-----------~g~gv~eL~~~l~~~~~~--~~ 156 (360)
T TIGR03597 91 NPVLLVGNKIDLLPKSVNL-SKIKEWMKKRAKELGLKPVDIILVSAK-----------KGNGIDELLDKIKKARNK--KD 156 (360)
T ss_pred CCEEEEEEchhhCCCCCCH-HHHHHHHHHHHHHcCCCcCcEEEecCC-----------CCCCHHHHHHHHHHHhCC--Ce
Confidence 5568899998632 2222 556666666677777654465554432 123378888988888777 89
Q ss_pred ccEEEecCCCHHHHHHHH
Q psy15666 206 LKSIGVSNYTAKHLVNLI 223 (339)
Q Consensus 206 ir~iGvS~~~~~~l~~~~ 223 (339)
|-.+|.+|.+-..+...+
T Consensus 157 v~~vG~~nvGKStliN~l 174 (360)
T TIGR03597 157 VYVVGVTNVGKSSLINKL 174 (360)
T ss_pred EEEECCCCCCHHHHHHHH
Confidence 999999999986655443
No 166
>PF01081 Aldolase: KDPG and KHG aldolase; InterPro: IPR000887 4-Hydroxy-2-oxoglutarate aldolase (4.1.3.16 from EC) (KHG-aldolase) catalyzes the interconversion of 4-hydroxy-2-oxoglutarate into pyruvate and glyoxylate. Phospho-2-dehydro-3-deoxygluconate aldolase (4.1.2.14 from EC) (KDPG-aldolase) catalyzes the interconversion of 6-phospho-2-dehydro-3-deoxy-D-gluconate into pyruvate and glyceraldehyde 3-phosphate. These two enzymes are structurally and functionally related []. They are both homotrimeric proteins of approximately 220 amino-acid residues. They are class I aldolases whose catalytic mechanism involves the formation of a Schiff-base intermediate between the substrate and the epsilon-amino group of a lysine residue. In both enzymes, an arginine is required for catalytic activity.; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 3VCR_A 1FQ0_A 1EUN_A 1EUA_B 1FWR_A 2C0A_B 1WBH_A 1WAU_A 2YW3_B 2YW4_A ....
Probab=20.72 E-value=1.1e+02 Score=26.22 Aligned_cols=45 Identities=22% Similarity=0.282 Sum_probs=30.0
Q ss_pred EEEecC-CCHHHHHHHHHcCCCceeEeccccCCCCCCcHHHHHHHHhCCceEEE
Q psy15666 208 SIGVSN-YTAKHLVNLIQNSKVVPAVNQVEFHPHFLQPQELIDVCNQNKIALQA 260 (339)
Q Consensus 208 ~iGvS~-~~~~~l~~~~~~~~~~~~~~q~~~~~~~~~~~~l~~~~~~~gi~v~~ 260 (339)
.||..+ .+.++++.+++.+- .+.+ +|.. ..+++++|+++|+.++.
T Consensus 61 ~vGAGTV~~~e~a~~a~~aGA-~Fiv-----SP~~--~~~v~~~~~~~~i~~iP 106 (196)
T PF01081_consen 61 LVGAGTVLTAEQAEAAIAAGA-QFIV-----SPGF--DPEVIEYAREYGIPYIP 106 (196)
T ss_dssp EEEEES--SHHHHHHHHHHT--SEEE-----ESS----HHHHHHHHHHTSEEEE
T ss_pred eeEEEeccCHHHHHHHHHcCC-CEEE-----CCCC--CHHHHHHHHHcCCcccC
Confidence 588877 66788888888652 2222 2221 26899999999999885
No 167
>PRK15424 propionate catabolism operon regulatory protein PrpR; Provisional
Probab=20.66 E-value=3e+02 Score=27.61 Aligned_cols=71 Identities=11% Similarity=0.054 Sum_probs=44.5
Q ss_pred HHHHHHHHHHhhCCCCCCccEEEecCCCH--HHHHHHHHcCCCceeEeccccCCCCCCcHHHHHHHHhCCceEEEecchh
Q psy15666 188 RHTLWNALTELYNPNNGPLKSIGVSNYTA--KHLVNLIQNSKVVPAVNQVEFHPHFLQPQELIDVCNQNKIALQAYASLG 265 (339)
Q Consensus 188 ~~~~~~~l~~l~~~~~G~ir~iGvS~~~~--~~l~~~~~~~~~~~~~~q~~~~~~~~~~~~l~~~~~~~gi~v~~~~~l~ 265 (339)
.-+++++|..+++- +++|.-||..+... ..+..++ ++ .+.|..|+-...- ...+..+++.|+.++.-..+.
T Consensus 93 ~~Dil~al~~a~~~-~~~iavv~~~~~~~~~~~~~~~l---~~--~i~~~~~~~~~e~-~~~v~~lk~~G~~~vvG~~~~ 165 (538)
T PRK15424 93 GFDVMQALARARKL-TSSIGVVTYQETIPALVAFQKTF---NL--RIEQRSYVTEEDA-RGQINELKANGIEAVVGAGLI 165 (538)
T ss_pred HhHHHHHHHHHHhc-CCcEEEEecCcccHHHHHHHHHh---CC--ceEEEEecCHHHH-HHHHHHHHHCCCCEEEcCchH
Confidence 45678888777653 37888888887653 3344444 33 3444444432222 678888999999888755443
No 168
>PRK07945 hypothetical protein; Provisional
Probab=20.65 E-value=6.9e+02 Score=23.23 Aligned_cols=37 Identities=5% Similarity=-0.024 Sum_probs=23.9
Q ss_pred CCcccEEEeecCCCCCCCCCCCcccccHHHHHHHHHHhhCCCCCCccEEEe
Q psy15666 161 TTYLDLFLIHWPGTFGVDSSSPQQISNRHTLWNALTELYNPNNGPLKSIGV 211 (339)
Q Consensus 161 ~d~iDl~~lH~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~G~ir~iGv 211 (339)
.||+ +.-+|+.. . . +.....+.|.++.+. |.+..+|=
T Consensus 191 ~D~v-IgSvH~~~--------~-~--~~~~~~~~l~~ai~~--~~~dvlgH 227 (335)
T PRK07945 191 LDVV-VASVHSKL--------R-M--DAAAMTRRMLAAVAN--PHTDVLGH 227 (335)
T ss_pred CCEE-EEEeecCC--------C-C--CHHHHHHHHHHHhcC--CCCeEEec
Confidence 4665 66788751 1 1 134556778887778 88888884
No 169
>TIGR03586 PseI pseudaminic acid synthase.
Probab=20.53 E-value=1.6e+02 Score=27.51 Aligned_cols=65 Identities=14% Similarity=0.263 Sum_probs=35.6
Q ss_pred HHHHHHHHhCCceEEEecchhHHHHHHHHHcCCCHHH---------HHHHHHhhCC--cEEecCCCCHHHHHHhhcC
Q psy15666 245 QELIDVCNQNKIALQAYASLGSTSTQIAKVHSVSPAQ---------VLLRWALQEN--FLIIPKSVTPERIVQNIAL 310 (339)
Q Consensus 245 ~~l~~~~~~~gi~v~~~~~l~~~l~~la~~~~~s~~~---------~al~~~l~~~--~~~i~g~~~~~~l~enl~~ 310 (339)
.++.++|++.||.+++ +|+.-.-.++..++|++.-+ -.|+.+-+.+ ++.=.|+++.++++..++.
T Consensus 80 ~~L~~~~~~~Gi~~~s-tpfd~~svd~l~~~~v~~~KI~S~~~~n~~LL~~va~~gkPvilstG~~t~~Ei~~Av~~ 155 (327)
T TIGR03586 80 KELFERAKELGLTIFS-SPFDETAVDFLESLDVPAYKIASFEITDLPLIRYVAKTGKPIIMSTGIATLEEIQEAVEA 155 (327)
T ss_pred HHHHHHHHHhCCcEEE-ccCCHHHHHHHHHcCCCEEEECCccccCHHHHHHHHhcCCcEEEECCCCCHHHHHHHHHH
Confidence 4677778888887775 55544222334444432111 1344444443 3344478888887777653
No 170
>PRK07114 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=20.47 E-value=5.8e+02 Score=22.28 Aligned_cols=87 Identities=20% Similarity=0.213 Sum_probs=51.6
Q ss_pred HHHHHHHHHhcCCCcccEEEeecCCCCCCCCCCCcccccHHHHHHHHH-HhhCCCCCCccEEEecC-CCHHHHHHHHHcC
Q psy15666 149 KSLVAQTLKDLGTTYLDLFLIHWPGTFGVDSSSPQQISNRHTLWNALT-ELYNPNNGPLKSIGVSN-YTAKHLVNLIQNS 226 (339)
Q Consensus 149 ~~~~~~sL~~L~~d~iDl~~lH~~~~~~~~~~~~~~~~~~~~~~~~l~-~l~~~~~G~ir~iGvS~-~~~~~l~~~~~~~ 226 (339)
-..+-+.|-+-|+..+.+=+ -.| ...+.++.|. +..++ .-=-.||+.+ .+.++++.+++.+
T Consensus 29 a~~~~~al~~gGi~~iEiT~-~tp--------------~a~~~i~~l~~~~~~~--~p~~~vGaGTVl~~e~a~~a~~aG 91 (222)
T PRK07114 29 AKKVIKACYDGGARVFEFTN-RGD--------------FAHEVFAELVKYAAKE--LPGMILGVGSIVDAATAALYIQLG 91 (222)
T ss_pred HHHHHHHHHHCCCCEEEEeC-CCC--------------cHHHHHHHHHHHHHhh--CCCeEEeeEeCcCHHHHHHHHHcC
Confidence 33455667777877665432 111 1345555553 22232 2213688887 6778998888865
Q ss_pred CCceeEeccccCCCCCCcHHHHHHHHhCCceEEE
Q psy15666 227 KVVPAVNQVEFHPHFLQPQELIDVCNQNKIALQA 260 (339)
Q Consensus 227 ~~~~~~~q~~~~~~~~~~~~l~~~~~~~gi~v~~ 260 (339)
- .+. .+|.. ..+++++|+++|+.++.
T Consensus 92 A-~Fi-----VsP~~--~~~v~~~~~~~~i~~iP 117 (222)
T PRK07114 92 A-NFI-----VTPLF--NPDIAKVCNRRKVPYSP 117 (222)
T ss_pred C-CEE-----ECCCC--CHHHHHHHHHcCCCEeC
Confidence 2 222 23322 26899999999999985
No 171
>COG0773 MurC UDP-N-acetylmuramate-alanine ligase [Cell envelope biogenesis, outer membrane]
Probab=20.44 E-value=77 Score=30.95 Aligned_cols=47 Identities=17% Similarity=0.256 Sum_probs=35.9
Q ss_pred HHHHHHHHhCCceEEEecchhHHHH------HHHHHcCCCHHHHHHHHHhhCC
Q psy15666 245 QELIDVCNQNKIALQAYASLGSTST------QIAKVHSVSPAQVLLRWALQEN 291 (339)
Q Consensus 245 ~~l~~~~~~~gi~v~~~~~l~~~l~------~la~~~~~s~~~~al~~~l~~~ 291 (339)
..-+.+++++||+++.+.-+.+.+- .+|-.||+|.+.-.|+|+++..
T Consensus 80 NpEi~~A~e~~ipi~~r~e~Laelm~~~~~iaVaGTHGKTTTTsmla~vl~~~ 132 (459)
T COG0773 80 NPEIVAALERGIPVISRAEMLAELMRFRTSIAVAGTHGKTTTTSMLAWVLEAA 132 (459)
T ss_pred CHHHHHHHHcCCCeEcHHHHHHHHHhCCeeEEEeCCCCchhHHHHHHHHHHhC
Confidence 4567889999999998776655221 2444579999999999999874
No 172
>PRK07535 methyltetrahydrofolate:corrinoid/iron-sulfur protein methyltransferase; Validated
Probab=20.43 E-value=6.2e+02 Score=22.61 Aligned_cols=99 Identities=11% Similarity=0.131 Sum_probs=58.2
Q ss_pred HHHHHHHHHHHHhcCCCcccEEEeecCCCCCCCCCCCcccccHHHHHHHHHHhhCCCCCCccEEEecCCCHHHHHHHHHc
Q psy15666 146 DQVKSLVAQTLKDLGTTYLDLFLIHWPGTFGVDSSSPQQISNRHTLWNALTELYNPNNGPLKSIGVSNYTAKHLVNLIQN 225 (339)
Q Consensus 146 ~~~~~~~~~sL~~L~~d~iDl~~lH~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~G~ir~iGvS~~~~~~l~~~~~~ 225 (339)
+.+.+..++. ..-|-|+||+=.= + .+.. ..+.+...++.+++. -. .-|-|=+++++.++++++.
T Consensus 25 ~~i~~~A~~~-~~~GAdiIDVg~~--~--------~~~e--E~~r~~~~v~~l~~~--~~-~plsIDT~~~~v~eaaL~~ 88 (261)
T PRK07535 25 AFIQKLALKQ-AEAGADYLDVNAG--T--------AVEE--EPETMEWLVETVQEV--VD-VPLCIDSPNPAAIEAGLKV 88 (261)
T ss_pred HHHHHHHHHH-HHCCCCEEEECCC--C--------Cchh--HHHHHHHHHHHHHHh--CC-CCEEEeCCCHHHHHHHHHh
Confidence 4444444333 3678999998532 1 1111 133444455555443 22 2378888999999999987
Q ss_pred CCCceeEeccccCCCCCCcHHHHHHHHhCCceEEEec
Q psy15666 226 SKVVPAVNQVEFHPHFLQPQELIDVCNQNKIALQAYA 262 (339)
Q Consensus 226 ~~~~~~~~q~~~~~~~~~~~~l~~~~~~~gi~v~~~~ 262 (339)
..-.+.+|-+.... .....+++.+++.|..++.+.
T Consensus 89 ~~G~~iINsIs~~~--~~~~~~~~l~~~~g~~vv~m~ 123 (261)
T PRK07535 89 AKGPPLINSVSAEG--EKLEVVLPLVKKYNAPVVALT 123 (261)
T ss_pred CCCCCEEEeCCCCC--ccCHHHHHHHHHhCCCEEEEe
Confidence 42244555444321 112678999999999988643
No 173
>PF01081 Aldolase: KDPG and KHG aldolase; InterPro: IPR000887 4-Hydroxy-2-oxoglutarate aldolase (4.1.3.16 from EC) (KHG-aldolase) catalyzes the interconversion of 4-hydroxy-2-oxoglutarate into pyruvate and glyoxylate. Phospho-2-dehydro-3-deoxygluconate aldolase (4.1.2.14 from EC) (KDPG-aldolase) catalyzes the interconversion of 6-phospho-2-dehydro-3-deoxy-D-gluconate into pyruvate and glyceraldehyde 3-phosphate. These two enzymes are structurally and functionally related []. They are both homotrimeric proteins of approximately 220 amino-acid residues. They are class I aldolases whose catalytic mechanism involves the formation of a Schiff-base intermediate between the substrate and the epsilon-amino group of a lysine residue. In both enzymes, an arginine is required for catalytic activity.; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 3VCR_A 1FQ0_A 1EUN_A 1EUA_B 1FWR_A 2C0A_B 1WBH_A 1WAU_A 2YW3_B 2YW4_A ....
Probab=20.31 E-value=1.5e+02 Score=25.33 Aligned_cols=119 Identities=18% Similarity=0.239 Sum_probs=67.9
Q ss_pred HHHHHHHHHhhCCCCCCccEEEecCCCHHHHHH---HHHcCCCceeEeccccCCCCCCcHHHHHHHHhCCceEEEecchh
Q psy15666 189 HTLWNALTELYNPNNGPLKSIGVSNYTAKHLVN---LIQNSKVVPAVNQVEFHPHFLQPQELIDVCNQNKIALQAYASLG 265 (339)
Q Consensus 189 ~~~~~~l~~l~~~~~G~ir~iGvS~~~~~~l~~---~~~~~~~~~~~~q~~~~~~~~~~~~l~~~~~~~gi~v~~~~~l~ 265 (339)
+++.+..+.|.+. | +|.+=|+..++..++. +.+.. |.+ -.....-...+..+.|.+.|-.++..--+
T Consensus 20 ~~a~~~~~al~~g--G-i~~iEiT~~t~~a~~~I~~l~~~~---p~~---~vGAGTV~~~e~a~~a~~aGA~FivSP~~- 89 (196)
T PF01081_consen 20 EDAVPIAEALIEG--G-IRAIEITLRTPNALEAIEALRKEF---PDL---LVGAGTVLTAEQAEAAIAAGAQFIVSPGF- 89 (196)
T ss_dssp GGHHHHHHHHHHT--T---EEEEETTSTTHHHHHHHHHHHH---TTS---EEEEES--SHHHHHHHHHHT-SEEEESS--
T ss_pred HHHHHHHHHHHHC--C-CCEEEEecCCccHHHHHHHHHHHC---CCC---eeEEEeccCHHHHHHHHHcCCCEEECCCC-
Confidence 4455556666665 5 8999998877644332 22221 110 01111111256777788888777653222
Q ss_pred HHHHHHHHHcCCCHHHHHHHHHhhCCcEEecCCCCHHHHHHhhcC--C----CC---CC-HHHHHHHhcCCCCCCc
Q psy15666 266 STSTQIAKVHSVSPAQVLLRWALQENFLIIPKSVTPERIVQNIAL--D----FE---LS-PEEVKAIENIPNKQKY 331 (339)
Q Consensus 266 ~~l~~la~~~~~s~~~~al~~~l~~~~~~i~g~~~~~~l~enl~~--~----~~---L~-~~~~~~l~~~~~~~r~ 331 (339)
..-.++++.+++...+||+.++.++...++. + || +. +.-++.|.......++
T Consensus 90 --------------~~~v~~~~~~~~i~~iPG~~TptEi~~A~~~G~~~vK~FPA~~~GG~~~ik~l~~p~p~~~~ 151 (196)
T PF01081_consen 90 --------------DPEVIEYAREYGIPYIPGVMTPTEIMQALEAGADIVKLFPAGALGGPSYIKALRGPFPDLPF 151 (196)
T ss_dssp ---------------HHHHHHHHHHTSEEEEEESSHHHHHHHHHTT-SEEEETTTTTTTHHHHHHHHHTTTTT-EE
T ss_pred --------------CHHHHHHHHHcCCcccCCcCCHHHHHHHHHCCCCEEEEecchhcCcHHHHHHHhccCCCCeE
Confidence 2335677777888899999999999888865 2 23 45 6677777776665543
No 174
>cd03319 L-Ala-DL-Glu_epimerase L-Ala-D/L-Glu epimerase catalyzes the epimerization of L-Ala-D/L-Glu and other dipeptides. The genomic context and the substrate specificity of characterized members of this family from E.coli and B.subtilis indicates a possible role in the metabolism of the murein peptide of peptidoglycan, of which L-Ala-D-Glu is a component. L-Ala-D/L-Glu epimerase is a member of the enolase-superfamily, which is characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and is stabilized by coordination to the essential Mg2+ ion.
Probab=20.29 E-value=5.8e+02 Score=23.21 Aligned_cols=70 Identities=11% Similarity=0.100 Sum_probs=46.3
Q ss_pred HHHHHHhhCCCCCCcc-EEEecCCCHHHHHHHHHcCCCceeEeccccCCCC--CCcHHHHHHHHhCCceEEEecchh
Q psy15666 192 WNALTELYNPNNGPLK-SIGVSNYTAKHLVNLIQNSKVVPAVNQVEFHPHF--LQPQELIDVCNQNKIALQAYASLG 265 (339)
Q Consensus 192 ~~~l~~l~~~~~G~ir-~iGvS~~~~~~l~~~~~~~~~~~~~~q~~~~~~~--~~~~~l~~~~~~~gi~v~~~~~l~ 265 (339)
++.+.+|++. ..|. ..|=+-++...+..+++.... +++|......- ....++..+|+++|+.++..+-+.
T Consensus 217 ~~~~~~L~~~--~~ipIa~~E~~~~~~~~~~~~~~~~~--d~v~~~~~~~GGi~~~~~~~~~a~~~gi~~~~~~~~~ 289 (316)
T cd03319 217 DDGLAYLRDK--SPLPIMADESCFSAADAARLAGGGAY--DGINIKLMKTGGLTEALRIADLARAAGLKVMVGCMVE 289 (316)
T ss_pred HHHHHHHHhc--CCCCEEEeCCCCCHHHHHHHHhcCCC--CEEEEeccccCCHHHHHHHHHHHHHcCCCEEEECchh
Confidence 4455666666 5555 445566888889999887654 55665544321 112678999999999998765544
No 175
>PRK13803 bifunctional phosphoribosylanthranilate isomerase/tryptophan synthase subunit beta; Provisional
Probab=20.21 E-value=8.9e+02 Score=24.71 Aligned_cols=88 Identities=13% Similarity=0.125 Sum_probs=49.4
Q ss_pred HhcCCCcccEEEeecCCCCCCCCCCCcccccHHHHHHHHHHhhCCCCCCccEEEec-CCCHHHHHHHHHcCCCceeEecc
Q psy15666 157 KDLGTTYLDLFLIHWPGTFGVDSSSPQQISNRHTLWNALTELYNPNNGPLKSIGVS-NYTAKHLVNLIQNSKVVPAVNQV 235 (339)
Q Consensus 157 ~~L~~d~iDl~~lH~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~G~ir~iGvS-~~~~~~l~~~~~~~~~~~~~~q~ 235 (339)
..+|.||+-+.+.... +... ..+.+.+.+.+.... ..++.+||. |-+++.+.++.+... ++++|+
T Consensus 20 ~~~gaD~iGfIf~~~S---------pR~V-~~~~~a~~i~~~l~~--~~v~~VgVfv~~~~~~i~~~~~~~~--ld~vQL 85 (610)
T PRK13803 20 VDMLPDFIGFIFYEKS---------PRFV-GNKFLAPNLEKAIRK--AGGRPVGVFVNESAKAMLKFSKKNG--IDFVQL 85 (610)
T ss_pred HHcCCCEEEEEecCCC---------CCCC-CHHHHHHHHHHhCCC--CCCCEEEEEeCCCHHHHHHHHHhcC--CCEEEE
Confidence 4589999998754422 1111 133313434443333 357889996 788899999888764 478888
Q ss_pred ccCCCCCCcHHHHHHHHhCCceEE
Q psy15666 236 EFHPHFLQPQELIDVCNQNKIALQ 259 (339)
Q Consensus 236 ~~~~~~~~~~~l~~~~~~~gi~v~ 259 (339)
.-..-... ...++..++.++.++
T Consensus 86 HG~e~~~~-~~~~~~l~~~~~~ii 108 (610)
T PRK13803 86 HGAESKAE-PAYCQRIYKKSIKKI 108 (610)
T ss_pred CCCCCccc-HHHHHHhhhcCCcEE
Confidence 75432111 233444444445443
Done!