RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy15666
(339 letters)
>gnl|CDD|223729 COG0656, ARA1, Aldo/keto reductases, related to diketogulonate
reductase [General function prediction only].
Length = 280
Score = 238 bits (609), Expect = 2e-77
Identities = 102/247 (41%), Positives = 150/247 (60%), Gaps = 27/247 (10%)
Query: 88 LRWALQENFCYRAIDTAQEYGNEASIGRALKVLLPKFNLKREDIFITSKLSPQYNGNADQ 147
+R AL+ YR IDTA+ YGNE +G A+K + + RE++FIT+K+ P G +
Sbjct: 34 VRAALELG--YRLIDTAEIYGNEEEVGEAIK----ESGVPREELFITTKVWPSDLGYDET 87
Query: 148 VKSLVAQTLKDLGTTYLDLFLIHWPGTFGVDSSSPQQISNRHTLWNALTELYNPNNGPLK 207
+K+L +LK LG Y+DL+LIHWP P + W AL EL + G ++
Sbjct: 88 LKAL-EASLKRLGLDYVDLYLIHWPV--------PNKYVVIEETWKALEELVD--EGLIR 136
Query: 208 SIGVSNYTAKHLVNLIQNSKVVPAVNQVEFHPHFLQPQELIDVCNQNKIALQAYASLG-- 265
+IGVSN+ +HL L+ +KV PAVNQ+E+HP +L+ EL+ C ++ IA++AY+ L
Sbjct: 137 AIGVSNFGVEHLEELLSLAKVKPAVNQIEYHP-YLRQPELLPFCQRHGIAVEAYSPLAKG 195
Query: 266 ------STSTQIAKVHSVSPAQVLLRWALQENFLIIPKSVTPERIVQNI-ALDFELSPEE 318
+IAK + +PAQV LRW +Q ++IPKS TPERI +N+ A DFELS E+
Sbjct: 196 GKLLDNPVLAEIAKKYGKTPAQVALRWHIQRGVIVIPKSTTPERIRENLAAFDFELSEED 255
Query: 319 VKAIENI 325
+ AI+ +
Sbjct: 256 MAAIDAL 262
Score = 73.4 bits (181), Expect = 6e-15
Identities = 31/96 (32%), Positives = 51/96 (53%), Gaps = 15/96 (15%)
Query: 1 VEFHPHFLQPQELIDVCNQNKIALQAYASLGSTSSNPLIADSTLAQIAKVHSVSPAQVLL 60
+E+HP +L+ EL+ C ++ IA++AY+ L L+ + LA+IAK + +PAQV L
Sbjct: 164 IEYHP-YLRQPELLPFCQRHGIAVEAYSPLAK--GGKLLDNPVLAEIAKKYGKTPAQVAL 220
Query: 61 RWALQENFCKFIKLYHKVHSVSPAQVLLRWALQENF 96
RW +Q K S +P ++ +EN
Sbjct: 221 RWHIQRGVIVIPK------STTPERI------RENL 244
>gnl|CDD|119408 cd06660, Aldo_ket_red, Aldo-keto reductases (AKRs) are a
superfamily of soluble NAD(P)(H) oxidoreductases whose
chief purpose is to reduce aldehydes and ketones to
primary and secondary alcohols. AKRs are present in all
phyla and are of importance to both health and
industrial applications. Members have very distinct
functions and include the prokaryotic
2,5-diketo-D-gluconic acid reductases and beta-keto
ester reductases, the eukaryotic aldose reductases,
aldehyde reductases, hydroxysteroid dehydrogenases,
steroid 5beta-reductases, potassium channel
beta-subunits and aflatoxin aldehyde reductases, among
others.
Length = 285
Score = 203 bits (519), Expect = 7e-64
Identities = 89/259 (34%), Positives = 136/259 (52%), Gaps = 47/259 (18%)
Query: 98 YRAIDTAQEYG---NEASIGRALKVLLPKFNLKREDIFITSKLSP----QYNGNADQVKS 150
IDTA YG +E +G ALK P RE++FI +K+ P + + + ++
Sbjct: 43 INFIDTADVYGDGESEELLGEALKERGP-----REEVFIATKVGPRPGDGRDLSPEHIRR 97
Query: 151 LVAQTLKDLGTTYLDLFLIHWPGTFGVDSSSPQQISNRHTLWNALTELYNPNNGPLKSIG 210
V ++LK LGT Y+DL+L+HWP D +P AL EL G +++IG
Sbjct: 98 AVEESLKRLGTDYIDLYLLHWP-----DPDTPD----IEETLRALEELVK--EGKIRAIG 146
Query: 211 VSNYTAKHLVNLIQNSKVVPAVNQVEFHPHFLQP-QELIDVCNQNKIALQAYASLGS--- 266
VSN++A+ L + + V PAVNQVE++ Q +EL+ C ++ I + AY+ L
Sbjct: 147 VSNFSAEQLEEALAAAGVPPAVNQVEYNLLDRQAEEELLPYCREHGIGVIAYSPLAGGLL 206
Query: 267 -----------------TSTQIAKVHSVSPAQVLLRWALQ--ENFLIIPKSVTPERIVQN 307
+IA+ H V+PAQV LRW LQ +IP + +PER+ +N
Sbjct: 207 TGKYLPGAPPPEGDLLEALKEIAEKHGVTPAQVALRWLLQQPGVTSVIPGASSPERLEEN 266
Query: 308 I-ALDFELSPEEVKAIENI 325
+ ALDFELS E++ A++ +
Sbjct: 267 LAALDFELSDEDLAALDAL 285
Score = 62.2 bits (152), Expect = 5e-11
Identities = 24/76 (31%), Positives = 35/76 (46%), Gaps = 11/76 (14%)
Query: 1 VEFHPHFLQP-QELIDVCNQNKIALQAYASLGS----------TSSNPLIADSTLAQIAK 49
VE++ Q +EL+ C ++ I + AY+ L L +IA+
Sbjct: 171 VEYNLLDRQAEEELLPYCREHGIGVIAYSPLAGGLLTGKYLPGAPPPEGDLLEALKEIAE 230
Query: 50 VHSVSPAQVLLRWALQ 65
H V+PAQV LRW LQ
Sbjct: 231 KHGVTPAQVALRWLLQ 246
>gnl|CDD|215817 pfam00248, Aldo_ket_red, Aldo/keto reductase family. This family
includes a number of K+ ion channel beta chain
regulatory domains - these are reported to have
oxidoreductase activity.
Length = 277
Score = 161 bits (409), Expect = 1e-47
Identities = 92/276 (33%), Positives = 142/276 (51%), Gaps = 53/276 (19%)
Query: 84 AQVLLRWALQENFCYRAIDTAQEYG---NEASIGRALKVLLPKFNLKREDIFITSKL--- 137
A LLR AL+ IDTA+ YG +E +G ALK +P R+++FI +K+
Sbjct: 19 ALELLRAALEAG--INLIDTAEVYGDGPSEELLGEALKKYVP-----RDEVFIATKVGPP 71
Query: 138 -SPQYNGNADQVKSLVAQTLKDLGTTYLDLFLIHWPGTFGVDSSSPQQISNRHTLWNALT 196
P +G+ + +K + ++LK LGT YLDL+L+HWP D S P + AL
Sbjct: 72 GPPPDDGSRENIKKSIEESLKRLGTDYLDLYLLHWP-----DPSLPIE-----ETLEALE 121
Query: 197 ELYNPNNGPLKSIGVSNYTAKHLVNLIQNSKVVPAVNQVEFHP-HFLQPQELIDVCNQNK 255
EL G ++ IGVSN++ + L +++ KV V QVE+ L + L+++C +N
Sbjct: 122 ELKK--EGKIRHIGVSNFSVEQLREALEHGKVPIVVVQVEYSLLRRLAEEGLLELCQENG 179
Query: 256 IALQAYASLGS-----------------------TSTQIAKVHSVSPAQVLLRWALQE-- 290
I + AY+ LG ++AK H VSPAQ+ LRWAL
Sbjct: 180 IGIIAYSPLGGGLLTGKYTSEADPAPGDRRLLLEVLKELAKEHGVSPAQLALRWALSRPG 239
Query: 291 NFLIIPKSVTPERIVQNI-ALDFELSPEEVKAIENI 325
+IP + + E++ +N+ AL+ ELS EE+ I+ +
Sbjct: 240 VISVIPGASSIEQLEENLAALELELSEEEIAEIDEL 275
Score = 49.3 bits (118), Expect = 1e-06
Identities = 28/79 (35%), Positives = 39/79 (49%), Gaps = 14/79 (17%)
Query: 1 VEFHP-HFLQPQELIDVCNQNKIALQAYASLGS---TSSNPLIADS----------TLAQ 46
VE+ L + L+++C +N I + AY+ LG T AD L +
Sbjct: 158 VEYSLLRRLAEEGLLELCQENGIGIIAYSPLGGGLLTGKYTSEADPAPGDRRLLLEVLKE 217
Query: 47 IAKVHSVSPAQVLLRWALQ 65
+AK H VSPAQ+ LRWAL
Sbjct: 218 LAKEHGVSPAQLALRWALS 236
>gnl|CDD|183203 PRK11565, dkgA, 2,5-diketo-D-gluconate reductase A; Provisional.
Length = 275
Score = 147 bits (373), Expect = 3e-42
Identities = 80/235 (34%), Positives = 125/235 (53%), Gaps = 29/235 (12%)
Query: 98 YRAIDTAQEYGNEASIGRALKVLLPKFNLKREDIFITSKLSPQYNGNADQVKSLVAQTLK 157
YR+IDTA Y NE +G+ALK + ++ RE++FIT+KL +N + + + + ++LK
Sbjct: 42 YRSIDTAAIYKNEEGVGKALK----EASVAREELFITTKL---WNDDHKRPREALEESLK 94
Query: 158 DLGTTYLDLFLIHWPGTFGVDSSSPQQISNRHTLWNALTELYNPNNGPLKSIGVSNYTAK 217
L Y+DL+L+HWP P W + EL G +KSIGV N+
Sbjct: 95 KLQLDYVDLYLMHWP--------VPAIDHYVEA-WKGMIEL--QKEGLIKSIGVCNFQIH 143
Query: 218 HLVNLIQNSKVVPAVNQVEFHPHFLQPQELIDVCNQNKIALQAYASLGSTST-------- 269
HL LI + V P +NQ+E HP +Q ++L +KI ++++ L
Sbjct: 144 HLQRLIDETGVTPVINQIELHP-LMQQRQLHAWNATHKIQTESWSPLAQGGKGVFDQKVI 202
Query: 270 -QIAKVHSVSPAQVLLRWALQENFLIIPKSVTPERIVQNIAL-DFELSPEEVKAI 322
+A + +PAQ+++RW L ++IPKSVTP RI +N + DF L +E+ I
Sbjct: 203 RDLADKYGKTPAQIVIRWHLDSGLVVIPKSVTPSRIAENFDVFDFRLDKDELGEI 257
>gnl|CDD|183012 PRK11172, dkgB, 2,5-diketo-D-gluconate reductase B; Provisional.
Length = 267
Score = 133 bits (338), Expect = 3e-37
Identities = 79/252 (31%), Positives = 132/252 (52%), Gaps = 28/252 (11%)
Query: 98 YRAIDTAQEYGNEASIGRALKVLLPKFNLKREDIFITSKLSPQYNGNADQVKSLVAQTLK 157
YRAIDTAQ Y NEA++G+A+ + + R+++FIT+K+ N D++ + ++L+
Sbjct: 30 YRAIDTAQIYDNEAAVGQAIA----ESGVPRDELFITTKIWID-NLAKDKLIPSLKESLQ 84
Query: 158 DLGTTYLDLFLIHWPGTFGVDSSSPQ-QISNRHTLWNALTELYNPNNGPLKSIGVSNYTA 216
L T Y+DL LIHWP SP ++S + AL E G + IG+SN+T
Sbjct: 85 KLRTDYVDLTLIHWP--------SPNDEVSVEEFM-QALLEA--KKQGLTREIGISNFTI 133
Query: 217 KHLVNLIQN-SKVVPAVNQVEFHPHFLQPQELIDVCNQNKIALQAYASLG-------STS 268
+ I A NQ+E P +LQ ++++ ++ I + +Y +L
Sbjct: 134 ALMKQAIAAVGAENIATNQIELSP-YLQNRKVVAFAKEHGIHVTSYMTLAYGKVLKDPVI 192
Query: 269 TQIAKVHSVSPAQVLLRWALQENFLIIPKSVTPERIVQNI-ALDFELSPEEVKAIENIPN 327
+IA H+ +PAQV+L WA+Q + +IP S E + N+ A D +L E++ AI +
Sbjct: 193 ARIAAKHNATPAQVILAWAMQLGYSVIPSSTKRENLASNLLAQDLQLDAEDMAAIAALDR 252
Query: 328 KQKYCWNPDKIA 339
+ +P+ +A
Sbjct: 253 NGR-LVSPEGLA 263
Score = 53.5 bits (129), Expect = 3e-08
Identities = 20/68 (29%), Positives = 40/68 (58%), Gaps = 4/68 (5%)
Query: 1 VEFHPHFLQPQELIDVCNQNKIALQAYASLGSTSSNPLIADSTLAQIAKVHSVSPAQVLL 60
+E P +LQ ++++ ++ I + +Y +L ++ D +A+IA H+ +PAQV+L
Sbjct: 153 IELSP-YLQNRKVVAFAKEHGIHVTSYMTLAY---GKVLKDPVIARIAAKHNATPAQVIL 208
Query: 61 RWALQENF 68
WA+Q +
Sbjct: 209 AWAMQLGY 216
>gnl|CDD|223739 COG0667, Tas, Predicted oxidoreductases (related to aryl-alcohol
dehydrogenases) [Energy production and conversion].
Length = 316
Score = 93.5 bits (233), Expect = 8e-22
Identities = 72/283 (25%), Positives = 112/283 (39%), Gaps = 87/283 (30%)
Query: 101 IDTAQEYGNEAS---IGRALKVLLPKFNLKREDIFITSKLSP---------QYNGNADQV 148
DTA YG+ S +G ALK + R+ + I +K+ + + D +
Sbjct: 50 FDTADVYGDGRSEEILGEALK---ERGR--RDKVVIATKVGYRPGDPGPNGVFGLSRDHI 104
Query: 149 KSLVAQTLKDLGTTYLDLFLIHWPGTFGVDSSSPQQISNRHTLWNALTELYNPNNGPLKS 208
+ V +LK LGT Y+DL+ +H P D +P AL EL G ++
Sbjct: 105 RRAVEASLKRLGTDYIDLYQLHRP-----DPETP-----IEETLEALDELVRE--GKIRY 152
Query: 209 IGVSNYTAKHLVNLIQNSKVVPAVNQVEFHPHFLQPQ----------ELIDVCNQNKIAL 258
IGVSNY+A+ + V LQP+ EL+ +C + I L
Sbjct: 153 IGVSNYSAEQIA----------EALAVAAPIDSLQPEYNLLERDAEKELLPLCREEGIGL 202
Query: 259 QAYASLGST--STQ---------------------------------IAKVHSVSPAQVL 283
AY+ L S + + +AK +PAQV
Sbjct: 203 LAYSPLASGLLTGKYLPGPEGSRASELPRFQRELTERGLAILRALEELAKELGATPAQVA 262
Query: 284 LRWALQENFLIIPKS--VTPERIVQNI-ALDFELSPEEVKAIE 323
L W L + + P E++ +N+ ALD +LS EE+ A++
Sbjct: 263 LAWVLAQPGVTSPIVGASKAEQLEENLAALDIKLSEEELAALD 305
Score = 32.3 bits (74), Expect = 0.33
Identities = 20/79 (25%), Positives = 28/79 (35%), Gaps = 25/79 (31%)
Query: 12 ELIDVCNQNKIALQAYASLG----STSSNPLIADST---------------------LAQ 46
EL+ +C + I L AY+ L + P S L +
Sbjct: 190 ELLPLCREEGIGLLAYSPLASGLLTGKYLPGPEGSRASELPRFQRELTERGLAILRALEE 249
Query: 47 IAKVHSVSPAQVLLRWALQ 65
+AK +PAQV L W L
Sbjct: 250 LAKELGATPAQVALAWVLA 268
>gnl|CDD|227322 COG4989, COG4989, Predicted oxidoreductase [General function
prediction only].
Length = 298
Score = 68.2 bits (167), Expect = 5e-13
Identities = 72/282 (25%), Positives = 112/282 (39%), Gaps = 67/282 (23%)
Query: 80 SVSPAQV--LLRWALQENFCYRAIDTAQEYGN---EASIGRALKVLLPKFNLKREDIFIT 134
++S ++ + AL+ D A YG EA G ALK L P RE I I
Sbjct: 27 NMSARELLSFIETALELGI--TTFDHADIYGGYQCEALFGEALK-LAPG---LREKIEIV 80
Query: 135 SK-----------LSPQYNGNADQVKSLVAQTLKDLGTTYLDLFLIHWPGTFGVDSSSPQ 183
SK Y+ + + + V Q+L +L T YLDL LIH P +D +
Sbjct: 81 SKCGIRLPSREEPRIGHYDTSKEHIIKSVEQSLINLKTDYLDLLLIHRPDPL-MD---AE 136
Query: 184 QISNRHTLWNALTELYNPNNGPLKSIGVSNYTAKHLVNLIQNSKVVP---AVNQVEFHPH 240
+++ A T L+ +G ++ GVSN+ L+Q +P NQ+E P
Sbjct: 137 EVA------EAFTHLH--KSGKVRHFGVSNFN-PAQFELLQ--SRLPFTLVTNQLELSPL 185
Query: 241 FLQPQELI-----DVCNQNKIALQAYASLGSTS---------------TQIA-KVHSVSP 279
++ D C Q ++ A++ LG +IA + +VS
Sbjct: 186 H---TPMLLDGTLDYCQQLRVRPMAWSPLGGGGLFLGDDKFQRLRKVLDRIAEEYGAVSI 242
Query: 280 AQVLLRWALQ--ENFLIIPKSVTPERIVQNI-ALDFELSPEE 318
V + W L+ I + ERI I AL L+ ++
Sbjct: 243 TAVAIAWLLRHPAKPQPIIGTGNLERIRAAIKALSLTLTRQQ 284
>gnl|CDD|224370 COG1453, COG1453, Predicted oxidoreductases of the aldo/keto
reductase family [General function prediction only].
Length = 391
Score = 45.0 bits (107), Expect = 3e-05
Identities = 26/90 (28%), Positives = 44/90 (48%), Gaps = 11/90 (12%)
Query: 84 AQVLLRWALQENFCYRAIDTAQEYGN---EASIGRALKVLLPKFNLKREDIFITSKLSPQ 140
A + +A++ Y IDTA Y E +G+ALK RE + + +KL
Sbjct: 36 ANETIDYAIEHGINY--IDTAWPYHGGESEEFLGKALKDGY------REKVKLATKLPSW 87
Query: 141 YNGNADQVKSLVAQTLKDLGTTYLDLFLIH 170
+ + ++ + + L+ LGT Y+D +LIH
Sbjct: 88 PVKDREDMERIFNEQLEKLGTDYIDYYLIH 117
>gnl|CDD|236676 PRK10376, PRK10376, putative oxidoreductase; Provisional.
Length = 290
Score = 43.8 bits (104), Expect = 6e-05
Identities = 51/200 (25%), Positives = 82/200 (41%), Gaps = 37/200 (18%)
Query: 145 ADQVKSLVAQTLKDLGTTYLDL------FLIHWPGTFGVDSSSPQQISNRHTLWNALTEL 198
+++ V L++LG LD+ H P + S + ++ L EL
Sbjct: 105 PAELRRAVHDNLRNLGLDVLDVVNLRLMGDGHGPA----EGSIEEPLT-------VLAEL 153
Query: 199 YNPNNGPLKSIGVSNYTAKHLVNLIQNSKVVPAVN-QVEFHPHFLQPQELIDVCNQNKIA 257
G ++ IG+SN T + + K+ V Q ++ LID ++ IA
Sbjct: 154 --QRQGLVRHIGLSNVTPTQVA---EARKIAEIVCVQNHYNLAHRADDALIDALARDGIA 208
Query: 258 LQAYASLG-------STSTQIAKVHSVSPAQVLLRWALQ--ENFLIIP--KSVTPERIVQ 306
+ LG ST + +A +P QV L W LQ N L+IP SV R +
Sbjct: 209 YVPFFPLGGFTPLQSSTLSDVAASLGATPMQVALAWLLQRSPNILLIPGTSSVAHLR--E 266
Query: 307 NIA-LDFELSPEEVKAIENI 325
N+A + LS E + ++ I
Sbjct: 267 NLAAAELVLSEEVLAELDGI 286
Score = 28.8 bits (65), Expect = 3.8
Identities = 20/54 (37%), Positives = 28/54 (51%), Gaps = 3/54 (5%)
Query: 12 ELIDVCNQNKIALQAYASLGSTSSNPLIADSTLAQIAKVHSVSPAQVLLRWALQ 65
LID ++ IA + LG + PL + STL+ +A +P QV L W LQ
Sbjct: 197 ALIDALARDGIAYVPFFPLGGFT--PLQS-STLSDVAASLGATPMQVALAWLLQ 247
>gnl|CDD|236727 PRK10625, tas, putative aldo-keto reductase; Provisional.
Length = 346
Score = 41.4 bits (97), Expect = 4e-04
Identities = 73/300 (24%), Positives = 114/300 (38%), Gaps = 84/300 (28%)
Query: 101 IDTAQEYG----------NEASIGRALKVLLPKFNLKREDIFITSKLS-----------P 139
ID A+ Y E IG L RE + I SK+S P
Sbjct: 47 IDVAEMYPVPPRPETQGLTETYIGNWLAK-----RGSREKLIIASKVSGPSRNNDKGIRP 101
Query: 140 QYNGNADQVKSLVAQTLKDLGTTYLDLFLIHWP-------GTFGVD-SSSPQQISNRHTL 191
+ ++ + +LK L T YLDL+ +HWP G G + S +S TL
Sbjct: 102 NQALDRKNIREALHDSLKRLQTDYLDLYQVHWPQRPTNCFGKLGYSWTDSAPAVSLLETL 161
Query: 192 WNALTELYNPNNGPLKSIGVSNYTAKHLVNLIQ--NSKVVPAVNQVEFHPHFLQPQE--- 246
+AL E G ++ IGVSN TA ++ + +P + ++ +P+ L +
Sbjct: 162 -DALAEQQRA--GKIRYIGVSNETAFGVMRYLHLAEKHDLPRIVTIQ-NPYSLLNRSFEV 217
Query: 247 -LIDVCNQNKIALQAYASLG-----------------------------STSTQ------ 270
L +V + L AY+ L TQ
Sbjct: 218 GLAEVSQYEGVELLAYSCLAFGTLTGKYLNGAKPAGARNTLFSRFTRYSGEQTQKAVAAY 277
Query: 271 --IAKVHSVSPAQVLLRWALQENFL--IIPKSVTPERIVQNI-ALDFELSPEEVKAIENI 325
IAK H + PAQ+ L + ++ F+ + + T E++ NI +L LS E + IE +
Sbjct: 278 VDIAKRHGLDPAQMALAFVRRQPFVASTLLGATTMEQLKTNIESLHLTLSEEVLAEIEAV 337
>gnl|CDD|182140 PRK09912, PRK09912, L-glyceraldehyde 3-phosphate reductase;
Provisional.
Length = 346
Score = 33.4 bits (76), Expect = 0.15
Identities = 49/211 (23%), Positives = 92/211 (43%), Gaps = 37/211 (17%)
Query: 74 LYHKVHSVSP---AQVLLRWALQENFCYRAIDTAQEYG-----NEASIGRALKVLLPKFN 125
L+H V+ + +LR A + D A YG E + GR L+ F
Sbjct: 32 LWHNFGHVNALESQRAILRKAFDLGITH--FDLANNYGPPPGSAEENFGRLLR---EDFA 86
Query: 126 LKREDIFITSK----LSPQYNGNADQVKSLVA---QTLKDLGTTYLDLFLIHWPGTFGVD 178
R+++ I++K + P G+ K L+A Q+LK +G Y+D+F H VD
Sbjct: 87 AYRDELIISTKAGYDMWPGPYGSGGSRKYLLASLDQSLKRMGLEYVDIFYSH-----RVD 141
Query: 179 SSSPQQISNRHTLWNALTELYNPNNGPLKSIGVSNYT---AKHLVNLIQNSKVVPAVNQV 235
++P + L +A+ +G +G+S+Y+ + +V L++ K+ ++Q
Sbjct: 142 ENTPME-ETASALAHAV------QSGKALYVGISSYSPERTQKMVELLREWKIPLLIHQP 194
Query: 236 EFH--PHFLQPQELIDVCNQNKIALQAYASL 264
++ ++ L+D N + A+ L
Sbjct: 195 SYNLLNRWVDKSGLLDTLQNNGVGCIAFTPL 225
>gnl|CDD|201841 pfam01527, HTH_Tnp_1, Transposase. Transposase proteins are
necessary for efficient DNA transposition. This family
consists of various E. coli insertion elements and
other bacterial transposases some of which are members
of the IS3 family.
Length = 75
Score = 28.1 bits (63), Expect = 1.3
Identities = 17/51 (33%), Positives = 25/51 (49%), Gaps = 11/51 (21%)
Query: 45 AQIAKVHSVSPAQVLLRWALQENFCKFIKLYHKVHSVSPAQVLLRWALQEN 95
+++A+ H VSPA L +W K Y V PA+VL+ +EN
Sbjct: 27 SELAREHGVSPAT-LYKW---------RKKYRGGLLVLPAEVLV-ALEEEN 66
>gnl|CDD|181927 PRK09522, PRK09522, bifunctional glutamine
amidotransferase/anthranilate phosphoribosyltransferase;
Provisional.
Length = 531
Score = 30.4 bits (68), Expect = 1.6
Identities = 28/96 (29%), Positives = 44/96 (45%), Gaps = 5/96 (5%)
Query: 134 TSKLSPQYNGNADQVKSLVAQTLKDLGTTYLDLFLIHWPGTFGVDSSSPQQISNRHTLWN 193
+S L + N D Q L +LG +L F + F QQ+ R TL+N
Sbjct: 318 SSDLLAAFGINLDMNADKSRQALDELGVCFL--FAPKYHTGFRHAMPVRQQLKTR-TLFN 374
Query: 194 ALTELYNPNNGPLKSIGVSNYTAKHLVNLIQNSKVV 229
L L NP + PL IGV Y+ + ++ + + +V+
Sbjct: 375 VLGPLINPAHPPLALIGV--YSPELVLPIAETLRVL 408
>gnl|CDD|237062 PRK12328, nusA, transcription elongation factor NusA; Provisional.
Length = 374
Score = 29.6 bits (67), Expect = 2.6
Identities = 15/59 (25%), Positives = 24/59 (40%), Gaps = 3/59 (5%)
Query: 70 KFIKLYHKVHSVSPAQVLLRWALQENFCYRAIDTAQEYGNEASIGRALKVLLPKFNLKR 128
K +KLY K+ V+ L + + ++ A+E IG L L N+ R
Sbjct: 53 KTLKLYQKIEVVADDDERL---QNDPEKFISLSEAKEIDPSVEIGDELTYELSLENMGR 108
>gnl|CDD|224493 COG1577, ERG12, Mevalonate kinase [Lipid metabolism].
Length = 307
Score = 28.0 bits (63), Expect = 6.5
Identities = 13/33 (39%), Positives = 17/33 (51%)
Query: 193 NALTELYNPNNGPLKSIGVSNYTAKHLVNLIQN 225
L EL N N G LK++GVS LV ++
Sbjct: 226 EELGELMNINQGLLKALGVSTPELDELVEAARS 258
>gnl|CDD|233017 TIGR00549, mevalon_kin, mevalonate kinase. This model represents
mevalonate kinase, the third step in the mevalonate
pathway of isopentanyl pyrophosphate (IPP) biosynthesis.
IPP is a common intermediate for a number of pathways
including cholesterol biosynthesis. This model covers
enzymes from eukaryotes, archaea and bacteria. The
related enzyme from the same pathway, phosphmevalonate
kinase, serves as an outgroup for this clade. Paracoccus
exhibits two genes within the
phosphomevalonate/mevalonate kinase family, one of which
falls between trusted and noise cutoffs of this model.
The degree of divergence is high, but if the trees
created from this model are correct, the proper names of
these genes have been swapped [Central intermediary
metabolism, Other].
Length = 274
Score = 28.0 bits (63), Expect = 7.6
Identities = 13/29 (44%), Positives = 18/29 (62%)
Query: 194 ALTELYNPNNGPLKSIGVSNYTAKHLVNL 222
+L EL N N G LK++GVS+ LV +
Sbjct: 223 SLGELMNINQGLLKALGVSHPKLDQLVEI 251
>gnl|CDD|129247 TIGR00142, hycI, hydrogenase maturation protease HycI. Hydrogenase
maturation protease is a protease that is involved in
the C-terminal processing of HycE,the large subunit of
hydrogenase 3 from E.Coli. This protein seems to be
found in E.Coli and in Archaea [Protein fate, Protein
modification and repair].
Length = 146
Score = 27.1 bits (60), Expect = 8.1
Identities = 12/34 (35%), Positives = 19/34 (55%)
Query: 290 ENFLIIPKSVTPERIVQNIALDFELSPEEVKAIE 323
ENF + + + P I+ A D L+P EV+ I+
Sbjct: 43 ENFTVAIRELRPTHILIVDATDMGLNPGEVRIID 76
>gnl|CDD|151954 pfam11517, Nab2, Nuclear abundant poly(A) RNA-bind protein 2
(Nab2). Nab2 is a yeast heterogeneous nuclear
ribonucleoprotein that modulates poly(A) tail length and
mRNA. This is the N terminal domain of the protein which
mediates interactions with the C-terminal globular
domain, Myosin-like protein 1 and the mRNA export
factor, Gfd1.The N-terminal domain of Nab2 shows a
structure of a helical fold. The N terminal domain of
Nab2 is thought to mediate protein protein interactions
that facilitate the nuclear export of mRNA. An essential
hydrophobic Phe73 patch on the N terminal domain is
thought to be a important component of the interface
between Nab2 and Mlp1.
Length = 107
Score = 26.8 bits (59), Expect = 8.7
Identities = 17/70 (24%), Positives = 29/70 (41%), Gaps = 3/70 (4%)
Query: 213 NYTAKHLVNLIQNSKVVPAVNQVEFHPHF--LQPQELIDVCNQNKIALQAYASLGSTSTQ 270
NY A+++V L+ N ++ Q E F + Q L DV AL+ T
Sbjct: 31 NYVAEYIVLLMSNGGSGESIVQ-ELTSLFDSVSTQALADVVQTAFFALELLQQGDDLETV 89
Query: 271 IAKVHSVSPA 280
+K+ ++
Sbjct: 90 YSKLRMMASQ 99
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.318 0.132 0.392
Gapped
Lambda K H
0.267 0.0610 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 16,859,366
Number of extensions: 1573572
Number of successful extensions: 1484
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1441
Number of HSP's successfully gapped: 38
Length of query: 339
Length of database: 10,937,602
Length adjustment: 98
Effective length of query: 241
Effective length of database: 6,590,910
Effective search space: 1588409310
Effective search space used: 1588409310
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 59 (26.8 bits)