BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy15667
(286 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3DMK|A Chain A, Crystal Structure Of Down Syndrome Cell Adhesion Molecule
(Dscam) Isoform 1.30.30, N-Terminal Eight Ig Domains
pdb|3DMK|B Chain B, Crystal Structure Of Down Syndrome Cell Adhesion Molecule
(Dscam) Isoform 1.30.30, N-Terminal Eight Ig Domains
pdb|3DMK|C Chain C, Crystal Structure Of Down Syndrome Cell Adhesion Molecule
(Dscam) Isoform 1.30.30, N-Terminal Eight Ig Domains
Length = 816
Score = 145 bits (365), Expect = 3e-35, Method: Compositional matrix adjust.
Identities = 96/320 (30%), Positives = 145/320 (45%), Gaps = 73/320 (22%)
Query: 2 PPILTYSFIEQTLQPGPAVSLKCIASGNPTPDIGWTLDGFELPTNNRFVIGQFVSGHGDV 61
PP++ +F E+T++PGP+V LKC+A GNPTP+I W LDG ++ N+R+ +GQ+V+ +GDV
Sbjct: 429 PPVIRQAFQEETMEPGPSVFLKCVAGGNPTPEISWELDGKKIANNDRYQVGQYVTVNGDV 488
Query: 62 ISHVNISHVTVEDGGEYACVAENRAGTCEIT--------PYD---------SGPYL---- 100
+S++NI+ V DGG Y C+A+++ G E + PY +G L
Sbjct: 489 VSYLNITSVHANDGGLYKCIAKSKVGVAEHSAKLNVYGLPYIRQMEKKAIVAGETLIVTC 548
Query: 101 ---------IAWFKDGRQIPGRTSST-----SLVINPVGRE-DRGIYQCIARRSDGDVAQ 145
I W +D R +P +L+I V R D+ Y C+A+ +G A+
Sbjct: 549 PVAGYPIDSIVWERDNRALPINRKQKVFPNGTLIIENVERNSDQATYTCVAKNQEGYSAR 608
Query: 146 GSAELQLGGLPYVRLIPKVTAIDGEGLSIKCPVAGYPIEEVHWEKVPPKIESFAFPFDGL 205
GS E+Q+ LP R+IP FAF
Sbjct: 609 GSLEVQVMVLP--RIIP-----------------------------------FAFEEGPA 631
Query: 206 PEGARTRVICGVTHGDPPLTIRWLKDGKPLSPRFPXXXXXXXXXXXXXXXXXXXAAHSGE 265
G + C V GD PL I W DG+ +S A+H+G
Sbjct: 632 QVGQYLTLHCSVPGGDLPLNIDWTLDGQAISEDLGITTSRVGRRGSVLTIEAVEASHAGN 691
Query: 266 YTCVASNTAAQARYSSKLQV 285
+TC A N A ++++ L V
Sbjct: 692 FTCHARNLAGHQQFTTPLNV 711
Score = 68.2 bits (165), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 66/226 (29%), Positives = 94/226 (41%), Gaps = 49/226 (21%)
Query: 9 FIEQTLQPGPAVSLKCIASGNPTPDIGWTLDGFELPTNNRFVIGQFVSGHGDVISHVN-- 66
F +T ++L C A G P P W E T + V+ D + V+
Sbjct: 255 FDMKTYSGSSTMALLCPAQGYPVPVFRW-YKFIEGTTRKQAVV------LNDRVKQVSGT 307
Query: 67 --ISHVTVEDGGEYACVAENRAG--------------TCEITP----------------Y 94
I VED G+Y CV N G + +I P Y
Sbjct: 308 LIIKDAVVEDSGKYLCVVNNSVGGESVETVLTVTAPLSAKIDPPTQTVDFGRPAVFTCQY 367
Query: 95 DSGPY-LIAWFKDGRQIPGRTSSTSLVINPVGREDRGIYQCIARRSDGDVAQGSAELQLG 153
P ++W KDG+ I G + S L I V +ED+G+YQC R+D + A+ SAEL+LG
Sbjct: 368 TGNPIKTVSWMKDGKAI-GHSESV-LRIESVKKEDKGMYQCFV-RNDRESAEASAELKLG 424
Query: 154 GL---PYVRLIPKVTAID-GEGLSIKCPVAGYPIEEVHWEKVPPKI 195
G P +R + ++ G + +KC G P E+ WE KI
Sbjct: 425 GRFDPPVIRQAFQEETMEPGPSVFLKCVAGGNPTPEISWELDGKKI 470
Score = 36.6 bits (83), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 62/255 (24%), Positives = 89/255 (34%), Gaps = 55/255 (21%)
Query: 11 EQTLQPGPAVSLKCIASGNPTPDIGWTLDGFELPTNNRFVIGQFVSGHGDVISHVNISHV 70
++ + G + + C +G P I W D LP N + Q V +G +I N+
Sbjct: 535 KKAIVAGETLIVTCPVAGYPIDSIVWERDNRALPINRK----QKVFPNGTLIIE-NVERN 589
Query: 71 TVEDGGEYACVAENRAG--------------------TCEITPYDSGPYL---------- 100
+ D Y CVA+N+ G E P G YL
Sbjct: 590 S--DQATYTCVAKNQEGYSARGSLEVQVMVLPRIIPFAFEEGPAQVGQYLTLHCSVPGGD 647
Query: 101 ----IAWFKDGRQIP---GRTSS------TSLVINPVGREDRGIYQCIARRSDGDVAQGS 147
I W DG+ I G T+S + L I V G + C AR G Q +
Sbjct: 648 LPLNIDWTLDGQAISEDLGITTSRVGRRGSVLTIEAVEASHAGNFTCHARNLAGH-QQFT 706
Query: 148 AELQLGGLPYVRLIPKVTAI-DGEGLSIKCPVAGYPIEEVHWEKVPPKIESFAFPFDGLP 206
L + P L P A G ++C G+P +V W+K + + L
Sbjct: 707 TPLNVYVPPRWILEPTDKAFAQGSDAKVECKADGFPKPQVTWKKA---VGDTPGEYKDLK 763
Query: 207 EGARTRVICGVTHGD 221
+ RV G H D
Sbjct: 764 KSDNIRVEEGTLHVD 778
>pdb|2V5R|A Chain A, Structural Basis For Dscam Isoform Specificity
pdb|2V5R|B Chain B, Structural Basis For Dscam Isoform Specificity
Length = 391
Score = 60.1 bits (144), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 56/186 (30%), Positives = 78/186 (41%), Gaps = 47/186 (25%)
Query: 3 PILTYSFIEQTLQPGPAVSLKCIASGNPTPDIGWTLDGFELPTNNRFVIGQFVSGHGDVI 62
P + FI+ L + SL C+A PTP W E T + V+ D +
Sbjct: 218 PQDKHQFIDVEL--ASSYSLLCMAQSYPTPSFRW-YKFIEGTTRKQAVV------LNDRV 268
Query: 63 SHVN----ISHVTVEDGGEYACVAENRAG--------------TCEITP----------- 93
V+ I VED G+Y CV N G + +I P
Sbjct: 269 KQVSGTLIIKDAVVEDSGKYLCVVNNSVGGESVETVLTVTAPLSAKIDPPTQTVDFGRPA 328
Query: 94 -----YDSGPY-LIAWFKDGRQIPGRTSSTSLVINPVGREDRGIYQCIARRSDGDVAQGS 147
Y P ++W KDG+ I G + S L I V +ED+G+YQC R+D + A+ S
Sbjct: 329 VFTCQYTGNPIKTVSWMKDGKAI-GHSESV-LRIESVKKEDKGMYQCFV-RNDRESAEAS 385
Query: 148 AELQLG 153
AEL+LG
Sbjct: 386 AELKLG 391
>pdb|2V5M|A Chain A, Structural Basis For Dscam Isoform Specificity
Length = 388
Score = 58.2 bits (139), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 53/175 (30%), Positives = 72/175 (41%), Gaps = 45/175 (25%)
Query: 14 LQPGPAVSLKCIASGNPTPDIGWTLDGFELPTNNRFVIGQFVSGHGDVISHVN----ISH 69
L +SL C A G P P W E T + V+ D + V+ I
Sbjct: 224 LMVAHTISLLCPAQGFPAPSFRW-YKFIEGTTRKQAVV------LNDRVKQVSGTLIIKD 276
Query: 70 VTVEDGGEYACVAENRAG--------------TCEITP----------------YDSGPY 99
VED G+Y CV N G + +I P Y P
Sbjct: 277 AVVEDSGKYLCVVNNSVGGESVETVLTVTAPLSAKIDPPTQTVDFGRPAVFTCQYTGNPI 336
Query: 100 -LIAWFKDGRQIPGRTSSTSLVINPVGREDRGIYQCIARRSDGDVAQGSAELQLG 153
++W KDG+ I G + S L I V +ED+G+YQC R+D + A+ SAEL+LG
Sbjct: 337 KTVSWMKDGKAI-GHSESV-LRIESVKKEDKGMYQCFV-RNDRESAEASAELKLG 388
Score = 32.3 bits (72), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 21/79 (26%), Positives = 29/79 (36%), Gaps = 15/79 (18%)
Query: 12 QTLQPGPAVSLKCIASGNPTPDIGWTLDGFELPTNNRFVIGQFVSGHGDVISHVNISHVT 71
QT+ G C +GNP + W DG + GH + + + I V
Sbjct: 317 QTVDFGRPAVFTCQYTGNPIKTVSWMKDGKAI-------------GHSESV--LRIESVK 361
Query: 72 VEDGGEYACVAENRAGTCE 90
ED G Y C N + E
Sbjct: 362 KEDKGMYQCFVRNDRESAE 380
>pdb|2V5S|A Chain A, Structural Basis For Dscam Isoform Specificity
pdb|2V5S|B Chain B, Structural Basis For Dscam Isoform Specificity
Length = 394
Score = 58.2 bits (139), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 53/175 (30%), Positives = 72/175 (41%), Gaps = 45/175 (25%)
Query: 14 LQPGPAVSLKCIASGNPTPDIGWTLDGFELPTNNRFVIGQFVSGHGDVISHVN----ISH 69
L +SL C A G P P W E T + V+ D + V+ I
Sbjct: 230 LMVAHTISLLCPAQGFPAPSFRW-YKFIEGTTRKQAVV------LNDRVKQVSGTLIIKD 282
Query: 70 VTVEDGGEYACVAENRAG--------------TCEITP----------------YDSGPY 99
VED G+Y CV N G + +I P Y P
Sbjct: 283 AVVEDSGKYLCVVNNSVGGESVETVLTVTAPLSAKIDPPTQTVDFGRPAVFTCQYTGNPI 342
Query: 100 -LIAWFKDGRQIPGRTSSTSLVINPVGREDRGIYQCIARRSDGDVAQGSAELQLG 153
++W KDG+ I G + S L I V +ED+G+YQC R+D + A+ SAEL+LG
Sbjct: 343 KTVSWMKDGKAI-GHSESV-LRIESVKKEDKGMYQCFV-RNDRESAEASAELKLG 394
Score = 32.3 bits (72), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 21/79 (26%), Positives = 29/79 (36%), Gaps = 15/79 (18%)
Query: 12 QTLQPGPAVSLKCIASGNPTPDIGWTLDGFELPTNNRFVIGQFVSGHGDVISHVNISHVT 71
QT+ G C +GNP + W DG + GH + + + I V
Sbjct: 323 QTVDFGRPAVFTCQYTGNPIKTVSWMKDGKAI-------------GHSESV--LRIESVK 367
Query: 72 VEDGGEYACVAENRAGTCE 90
ED G Y C N + E
Sbjct: 368 KEDKGMYQCFVRNDRESAE 386
>pdb|2YD6|A Chain A, Crystal Structure Of The N-Terminal Ig1-2 Module Of Human
Receptor Protein Tyrosine Phosphatase Delta
pdb|2YD7|A Chain A, Crystal Structure Of The N-Terminal Ig1-2 Module Of Human
Receptor Protein Tyrosine Phosphatase Delta
pdb|2YD7|B Chain B, Crystal Structure Of The N-Terminal Ig1-2 Module Of Human
Receptor Protein Tyrosine Phosphatase Delta
Length = 212
Score = 55.5 bits (132), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 56/203 (27%), Positives = 76/203 (37%), Gaps = 52/203 (25%)
Query: 1 TPPILTYSFIEQTLQPGPAVSLKCIASGNPTPDIGWTLDGFELPTNNRFVIGQFVSGHGD 60
TPP T + ++QT G S C A+G+P P I W G ++ +N RF + +F G G
Sbjct: 5 TPPRFTRTPVDQTGVSGGVASFICQATGDPRPKIVWNKKGKKV-SNQRFEVIEFDDGSGS 63
Query: 61 VISHVNISHVTVEDGGEYACVAENRAGTCEIT----------------PYDSGPYL---- 100
V+ + T D Y CVA N G ++ D GP L
Sbjct: 64 VLRIQPLR--TPRDEAIYECVASNNVGEISVSTRLTVLREDQIPRGFPTIDMGPQLKVVE 121
Query: 101 ------------------IAWFKD----------GRQIPGRTSST-SLVINPVGREDRGI 131
I WFKD GR R+ S +L I D+G
Sbjct: 122 RTRTATMLCAASGNPDPEITWFKDFLPVDTSNNNGRIKQLRSESIGALQIEQSEESDQGK 181
Query: 132 YQCIARRSDGDVAQGSAELQLGG 154
Y+C+A S G A L + G
Sbjct: 182 YECVATNSAGTRYSAPANLYVRG 204
Score = 31.6 bits (70), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 25/107 (23%), Positives = 49/107 (45%), Gaps = 17/107 (15%)
Query: 101 IAWFKDGRQIPGRT---------SSTSLVINPVGR-EDRGIYQCIARRSDGDVAQGS--- 147
I W K G+++ + S + L I P+ D IY+C+A + G+++ +
Sbjct: 38 IVWNKKGKKVSNQRFEVIEFDDGSGSVLRIQPLRTPRDEAIYECVASNNVGEISVSTRLT 97
Query: 148 --AELQL-GGLPYVRLIPKVTAID-GEGLSIKCPVAGYPIEEVHWEK 190
E Q+ G P + + P++ ++ ++ C +G P E+ W K
Sbjct: 98 VLREDQIPRGFPTIDMGPQLKVVERTRTATMLCAASGNPDPEITWFK 144
Score = 28.5 bits (62), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 23/73 (31%), Positives = 27/73 (36%), Gaps = 2/73 (2%)
Query: 214 ICGVTHGDPPLTIRWLKDGKPLS-PRFPXXXXXXXXXXXXXXXXXXXAAHSGEYTCVASN 272
IC T GDP I W K GK +S RF Y CVASN
Sbjct: 27 ICQAT-GDPRPKIVWNKKGKKVSNQRFEVIEFDDGSGSVLRIQPLRTPRDEAIYECVASN 85
Query: 273 TAAQARYSSKLQV 285
+ S++L V
Sbjct: 86 NVGEISVSTRLTV 98
>pdb|3P3Y|A Chain A, Crystal Structure Of Neurofascin Homophilic Adhesion
Complex In Space Group P6522
pdb|3P40|A Chain A, Crystal Structure Of Neurofascin Adhesion Complex In Space
Group P3221
Length = 404
Score = 53.1 bits (126), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 29/81 (35%), Positives = 44/81 (54%), Gaps = 8/81 (9%)
Query: 12 QTLQPGPAVSLKCIASGNPTPDIGWTLDGFELPTNNRFVIGQFVSGHGDVISHVNISHVT 71
Q + G + L+CIASG PTPDI W G +LP++ + + + I++V+
Sbjct: 232 QMVLRGMDLLLECIASGVPTPDIAWYKKGGDLPSDK--------AKFENFNKALRITNVS 283
Query: 72 VEDGGEYACVAENRAGTCEIT 92
ED GEY C+A N+ G+ T
Sbjct: 284 EEDSGEYFCLASNKMGSIRHT 304
Score = 36.6 bits (83), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 27/94 (28%), Positives = 41/94 (43%), Gaps = 7/94 (7%)
Query: 101 IAWFKDGRQIPGRTS-----STSLVINPVGREDRGIYQCIARRSDGDVAQGSAELQLGGL 155
IAW+K G +P + + +L I V ED G Y C+A G + + + +++
Sbjct: 254 IAWYKKGGDLPSDKAKFENFNKALRITNVSEEDSGEYFCLASNKMGSI-RHTISVRVKAA 312
Query: 156 PYVRLIPK-VTAIDGEGLSIKCPVAGYPIEEVHW 188
PY PK + GE + C G P V W
Sbjct: 313 PYWLDEPKNLILAPGEDGRLVCRANGNPKPTVQW 346
Score = 35.0 bits (79), Expect = 0.042, Method: Compositional matrix adjust.
Identities = 24/89 (26%), Positives = 37/89 (41%), Gaps = 5/89 (5%)
Query: 2 PPILTYSFIEQTLQPGPAVSLKCIASGNPTPDIGWTLDG--FELPTNNRFVIGQFVSGHG 59
P I S + + P + ++C A GNP P WT + F + + R + + G
Sbjct: 17 PTITKQSAKDHIVDPRDNILIECEAKGNPAPSFHWTRNSRFFNIAKDPRVSMRR---RSG 73
Query: 60 DVISHVNISHVTVEDGGEYACVAENRAGT 88
++ E GEY C A N+ GT
Sbjct: 74 TLVIDFRSGGRPEEYEGEYQCFARNKFGT 102
Score = 32.0 bits (71), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 25/78 (32%), Positives = 31/78 (39%), Gaps = 14/78 (17%)
Query: 14 LQPGPAVSLKCIASGNPTPDIGWTLDGFEL----PTNNRFVIGQFVSGHGDVISHVNISH 69
L PG L C A+GNP P + W ++G L P NR V G + + IS
Sbjct: 324 LAPGEDGRLVCRANGNPKPTVQWMVNGEPLQSAPPNPNREVAGDTI-----IFRDTQISS 378
Query: 70 VTVEDGGEYACVAENRAG 87
V Y C N G
Sbjct: 379 RAV-----YQCNTSNEHG 391
Score = 27.3 bits (59), Expect = 9.3, Method: Compositional matrix adjust.
Identities = 19/70 (27%), Positives = 25/70 (35%), Gaps = 4/70 (5%)
Query: 217 VTHGDPPLTIRWLKDGKPLSPRFPXXXXXXXXXXXXXXXXXXXAAHSGEYTCVASNTAAQ 276
+ G P I W K G L P SGEY C+ASN
Sbjct: 245 IASGVPTPDIAWYKKGGDL----PSDKAKFENFNKALRITNVSEEDSGEYFCLASNKMGS 300
Query: 277 ARYSSKLQVK 286
R++ ++VK
Sbjct: 301 IRHTISVRVK 310
>pdb|1CS6|A Chain A, N-terminal Fragment Of Axonin-1 From Chicken
Length = 382
Score = 49.7 bits (117), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 28/72 (38%), Positives = 36/72 (50%), Gaps = 9/72 (12%)
Query: 17 GPAVSLKCIASGNPTPDIGWTLDGFELPTNNRFVIGQFVSGHGDVISHVNISHVTVEDGG 76
G + C+ASG P P + W DG L + NR VSG + S + +ED G
Sbjct: 309 GSDLRWSCVASGKPRPAVRWLRDGQPLASQNRIE----VSG-----GELRFSKLVLEDSG 359
Query: 77 EYACVAENRAGT 88
Y CVAEN+ GT
Sbjct: 360 MYQCVAENKHGT 371
Score = 48.5 bits (114), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 48/172 (27%), Positives = 67/172 (38%), Gaps = 49/172 (28%)
Query: 17 GPAVSLKCIASGNPTPDIGW-TLDGFELPTNNRFVIGQFVSGHGDVISHVNISHVTVEDG 75
G V+L+C A GNP P I W LDG + +++S ++I +V ED
Sbjct: 222 GQMVTLECFAFGNPVPQIKWRKLDGSQ--------TSKWLSSE----PLLHIQNVDFEDE 269
Query: 76 GEYACVAENRAG------------------TCEITPYDSGPYL-------------IAWF 104
G Y C AEN G T D G L + W
Sbjct: 270 GTYECEAENIKGRDTYQGRIIIHAQPDWLDVITDTEADIGSDLRWSCVASGKPRPAVRWL 329
Query: 105 KDGRQIPGRT----SSTSLVINPVGREDRGIYQCIARRSDGDVAQGSAELQL 152
+DG+ + + S L + + ED G+YQC+A G V SAEL +
Sbjct: 330 RDGQPLASQNRIEVSGGELRFSKLVLEDSGMYQCVAENKHGTV-YASAELTV 380
Score = 44.3 bits (103), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 79/375 (21%), Positives = 117/375 (31%), Gaps = 126/375 (33%)
Query: 20 VSLKCIASGNPTPDIGWTLDGFELP----TNNRFVIGQFVSGHGDVISHVNISH-VTVED 74
V+L C A NP W ++G EL + R V G V IS+ V +D
Sbjct: 25 VTLTCRARANPPATYRWKMNGTELKMGPDSRYRLVAGDLV-----------ISNPVKAKD 73
Query: 75 GGEYACVAENRAGTC-------------EITPYDSGPYLIA------------------- 102
G Y CVA N GT E + + P I
Sbjct: 74 AGSYQCVATNARGTVVSREASLRFGFLQEFSAEERDPVKITEGWGVMFTCSPPPHYPALS 133
Query: 103 --WF---------KDGRQIPGRTSSTSLVINPVGREDRGIYQCIARRS----DGDVAQGS 147
W DGR+ +T+ +L I D G Y C A V
Sbjct: 134 YRWLLNEFPNFIPADGRRFVSQTTG-NLYIAKTEASDLGNYSCFATSHIDFITKSVFSKF 192
Query: 148 AELQLGGLPYVRLIPKVT--------AIDGEGLSIKCPVAGYPIEEVHWEKVPPK----- 194
++L L + P + A+ G+ ++++C G P+ ++ W K+
Sbjct: 193 SQLSLAAEDARQYAPSIKAKFPADTYALTGQMVTLECFAFGNPVPQIKWRKLDGSQTSKW 252
Query: 195 --------IESFAFPFDGLPE-----------------------------------GART 211
I++ F +G E G+
Sbjct: 253 LSSEPLLHIQNVDFEDEGTYECEAENIKGRDTYQGRIIIHAQPDWLDVITDTEADIGSDL 312
Query: 212 RVICGVTHGDPPLTIRWLKDGKPLSPRFPXXXXXXXXXXXXXXXXXXXAAHSGEYTCVAS 271
R C V G P +RWL+DG+PL+ + SG Y CVA
Sbjct: 313 RWSC-VASGKPRPAVRWLRDGQPLASQ-----NRIEVSGGELRFSKLVLEDSGMYQCVAE 366
Query: 272 NTAAQARYSSKLQVK 286
N S++L V+
Sbjct: 367 NKHGTVYASAELTVQ 381
>pdb|2OM5|A Chain A, N-Terminal Fragment Of Human Tax1
Length = 381
Score = 48.1 bits (113), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 47/183 (25%), Positives = 65/183 (35%), Gaps = 53/183 (28%)
Query: 3 PILTYSFIEQTLQPGPAVSLKCIASGNPTPDIGWTLDGFELPTNNRFVIGQFVSGHGDVI 62
P TY+ + G V+L+C A GNP P I W R V G
Sbjct: 213 PAETYALV------GQQVTLECFAFGNPVPRIKW-----------RKVDGSLSPQWTTAE 255
Query: 63 SHVNISHVTVEDGGEYACVAENRAGTCEI------------------TPYDSGPYL---- 100
+ I V+ ED G Y C AEN G + T D G L
Sbjct: 256 PTLQIPSVSFEDEGTYECEAENSKGRDTVQGRIIVQAQPEWLKVISDTEADIGSNLRWGC 315
Query: 101 ---------IAWFKDGRQIPGRTS----STSLVINPVGREDRGIYQCIARRSDGDVAQGS 147
+ W ++G + + + L + + ED G+YQC+A G + S
Sbjct: 316 AAAGKPRPTVRWLRNGEPLASQNRVEVLAGDLRFSKLSLEDSGMYQCVAENKHGTI-YAS 374
Query: 148 AEL 150
AEL
Sbjct: 375 AEL 377
Score = 38.5 bits (88), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 32/91 (35%), Positives = 41/91 (45%), Gaps = 4/91 (4%)
Query: 101 IAWFK-DGRQIPGRTSST-SLVINPVGREDRGIYQCIARRSDG-DVAQGSAELQLGGLPY 157
I W K DG P T++ +L I V ED G Y+C A S G D QG +Q +
Sbjct: 238 IKWRKVDGSLSPQWTTAEPTLQIPSVSFEDEGTYECEAENSKGRDTVQGRIIVQ-AQPEW 296
Query: 158 VRLIPKVTAIDGEGLSIKCPVAGYPIEEVHW 188
+++I A G L C AG P V W
Sbjct: 297 LKVISDTEADIGSNLRWGCAAAGKPRPTVRW 327
Score = 38.5 bits (88), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 76/373 (20%), Positives = 120/373 (32%), Gaps = 122/373 (32%)
Query: 20 VSLKCIASGNPTPDIGWTLDGFEL---PTNNRFVIGQFVSGHGDVISHVNISHVTVEDGG 76
V L C A +P W ++G E+ P + ++G G++ V ++ +D G
Sbjct: 24 VLLACRARASPPATYRWKMNGTEMKLEPGSRHQLVG------GNL---VIMNPTKAQDAG 74
Query: 77 EYACVAENRAGTC-------------EITPYDSGP------------------------- 98
Y C+A N GT E + + P
Sbjct: 75 VYQCLASNPVGTVVSREAILRFGFLQEFSKEERDPVKAHEGWGVMLPCNPPAHYPGLSYR 134
Query: 99 YLIAWF-----KDGRQIPGRTSSTSLVINPVGREDRGIYQCIARR----SDGDVAQGSAE 149
+L+ F DGR +T+ +L I D G Y C+A S V A+
Sbjct: 135 WLLNEFPNFIPTDGRHFVSQTTG-NLYIARTNASDLGNYSCLATSHMDFSTKSVFSKFAQ 193
Query: 150 LQLGGLPYVRLIPKVTA--------IDGEGLSIKCPVAGYPIEEVHWEKV---------- 191
L L P + A + G+ ++++C G P+ + W KV
Sbjct: 194 LNLAAEDTRLFAPSIKARFPAETYALVGQQVTLECFAFGNPVPRIKWRKVDGSLSPQWTT 253
Query: 192 ---PPKIESFAFPFDGLPE-----------------------------------GARTRV 213
+I S +F +G E G+ R
Sbjct: 254 AEPTLQIPSVSFEDEGTYECEAENSKGRDTVQGRIIVQAQPEWLKVISDTEADIGSNLRW 313
Query: 214 ICGVTHGDPPLTIRWLKDGKPLSPRFPXXXXXXXXXXXXXXXXXXXAAHSGEYTCVASNT 273
C G P T+RWL++G+PL+ + SG Y CVA N
Sbjct: 314 GCAAA-GKPRPTVRWLRNGEPLASQ-----NRVEVLAGDLRFSKLSLEDSGMYQCVAENK 367
Query: 274 AAQARYSSKLQVK 286
S++L V+
Sbjct: 368 HGTIYASAELAVQ 380
>pdb|2DM3|A Chain A, Solution Structure Of The Second Ig Domain Of Human
Palladin
Length = 110
Score = 47.4 bits (111), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 29/75 (38%), Positives = 36/75 (48%), Gaps = 4/75 (5%)
Query: 13 TLQPGPAVSLKCIASGNPTPDIGWTLDGFELPTNNRFVIGQFVSGHGDVISHVNISHVTV 72
T+Q G + C SG PTPD+ W LDG P V +G + + I VT
Sbjct: 20 TVQEGKLCRMDCKVSGLPTPDLSWQLDG--KPVRPDSAHKMLVRENG--VHSLIIEPVTS 75
Query: 73 EDGGEYACVAENRAG 87
D G Y C+A NRAG
Sbjct: 76 RDAGIYTCIATNRAG 90
Score = 36.6 bits (83), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 24/79 (30%), Positives = 34/79 (43%), Gaps = 1/79 (1%)
Query: 207 EGARTRVICGVTHGDPPLTIRWLKDGKPLSPRFPXXXXXXXXXXXXXXXXXXXAAHSGEY 266
EG R+ C V+ G P + W DGKP+ P + +G Y
Sbjct: 23 EGKLCRMDCKVS-GLPTPDLSWQLDGKPVRPDSAHKMLVRENGVHSLIIEPVTSRDAGIY 81
Query: 267 TCVASNTAAQARYSSKLQV 285
TC+A+N A Q +S +L V
Sbjct: 82 TCIATNRAGQNSFSLELVV 100
Score = 29.6 bits (65), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 17/35 (48%), Positives = 19/35 (54%), Gaps = 3/35 (8%)
Query: 118 SLVINPVGREDRGIYQCIARRSDGDVAQGSAELQL 152
SL+I PV D GIY CIA G Q S L+L
Sbjct: 67 SLIIEPVTSRDAGIYTCIATNRAG---QNSFSLEL 98
>pdb|1QZ1|A Chain A, Crystal Structure Of The Ig 1-2-3 Fragment Of Ncam
Length = 291
Score = 47.4 bits (111), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 28/80 (35%), Positives = 37/80 (46%), Gaps = 3/80 (3%)
Query: 8 SFIEQTLQPGPAVSLKCIASGNPTPDIGWTLDGFELPTNNRFVIGQFVSGHGDVISHVNI 67
S + T G +V+L C A G P P + WT DG + S D S + I
Sbjct: 202 SIVNATANLGQSVTLVCDADGFPEPTMSWTKDGEPIENEEEDDEKHIFS---DDSSELTI 258
Query: 68 SHVTVEDGGEYACVAENRAG 87
+V D EY C+AEN+AG
Sbjct: 259 RNVDKNDEAEYVCIAENKAG 278
Score = 30.8 bits (68), Expect = 0.81, Method: Compositional matrix adjust.
Identities = 47/219 (21%), Positives = 80/219 (36%), Gaps = 51/219 (23%)
Query: 25 IASGNPTPDIGW-TLDGFELPTNNRFVIGQFVSGHGDVISHVNISHVTVEDGGEYACVAE 83
+A DI W + +G +L N + + V + D S + I + ++D G Y CV
Sbjct: 26 VAGDAKDKDISWFSPNGEKLSPNQQRI---SVVWNDDDSSTLTIYNANIDDAGIYKCVVT 82
Query: 84 NRAGT----------------------------------CEITPYDSGPYLIAWFKDGRQ 109
GT C++ S P I W GR
Sbjct: 83 AEDGTQSEATVNVKIFQKLMFKNAPTPQEFKEGEDAVIVCDVVS--SLPPTIIWKHKGRD 140
Query: 110 IPGRT-------SSTSLVINPVGREDRGIYQCIAR-RSDGDVAQGSAELQLGGLPYVRL- 160
+ + S+ L I + + D G Y+C R + G++ ++ + P V+
Sbjct: 141 VILKKDVRFIVLSNNYLQIRGIKKTDEGTYRCEGRILARGEINFKDIQVIVNVPPTVQAR 200
Query: 161 --IPKVTAIDGEGLSIKCPVAGYPIEEVHWEKVPPKIES 197
I TA G+ +++ C G+P + W K IE+
Sbjct: 201 QSIVNATANLGQSVTLVCDADGFPEPTMSWTKDGEPIEN 239
>pdb|3LAF|A Chain A, Structure Of Dcc, A Netrin-1 Receptor
Length = 403
Score = 47.0 bits (110), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 34/114 (29%), Positives = 56/114 (49%), Gaps = 22/114 (19%)
Query: 95 DSGPYLIAWFKDG-----------RQIPGRTSSTSLVINPV-----GREDRGIYQCIARR 138
D G +I W KDG +Q+P + SL+I + + D G+YQC A
Sbjct: 48 DRGVPVIKWKKDGLILALGMDDRKQQLP----NGSLLIQNILHSRHHKPDEGLYQCEASL 103
Query: 139 SD-GDVAQGSAELQLGG-LPYVRLIPKVTAIDGEGLSIKCPVAGYPIEEVHWEK 190
D G + +A++ + G L ++ +TA G+ + +KC V G P+ +HW+K
Sbjct: 104 GDSGSIISRTAKVMVAGPLRFLSQTESITAFMGDTVLLKCEVIGDPMPTIHWQK 157
Score = 42.0 bits (97), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 53/224 (23%), Positives = 84/224 (37%), Gaps = 61/224 (27%)
Query: 17 GPAVSLKCIASGNPTPDIGWTLDGFEL---PTNNRFVIGQFVSGHGDVISHVNISHVTVE 73
G V LKC G+P P I W + +L P ++R V+ SG + IS +
Sbjct: 136 GDTVLLKCEVIGDPMPTIHWQKNQQDLNPIPGDSRVVV--LPSGA------LQISRLQPG 187
Query: 74 DGGEYACVAENRAGT----------------------------------------CEITP 93
D G Y C A N A T C ++
Sbjct: 188 DSGVYRCSARNPASTRTGNEAEVRILSDPGLHRQLYFLQRPSNVIAIEGKDAVLECCVSG 247
Query: 94 YDSGPYLIAWFKDGRQIPGRTSS------TSLVINPVGREDRGIYQCIARRSDGDVAQGS 147
Y P W + I R+ ++L+I+ V +D G Y C+ + +++ S
Sbjct: 248 YP--PPSFTWLRGEEVIQLRSKKYSLLGGSNLLISNVTDDDSGTYTCVVTYKNENIS-AS 304
Query: 148 AELQLGGLPYVRLIP-KVTAIDGEGLSIKCPVAGYPIEEVHWEK 190
AEL + P+ P + A + + +C V+G P+ V+W K
Sbjct: 305 AELTVLVPPWFLNHPSNLYAYESMDIEFECAVSGKPVPTVNWMK 348
Score = 40.4 bits (93), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 24/71 (33%), Positives = 34/71 (47%), Gaps = 8/71 (11%)
Query: 20 VSLKCIASGNPTPDIGWTLDGFELPTNNRFVIGQFVSGHGDVISHVNISHVTVEDGGEYA 79
+ +C SG P P + W +G + ++ F Q V G S++ I V D G Y
Sbjct: 330 IEFECAVSGKPVPTVNWMKNGDVVIPSDYF---QIVGG-----SNLRILGVVKSDEGFYQ 381
Query: 80 CVAENRAGTCE 90
CVAEN AG +
Sbjct: 382 CVAENEAGNAQ 392
Score = 40.4 bits (93), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 50/175 (28%), Positives = 70/175 (40%), Gaps = 54/175 (30%)
Query: 17 GPAVSLKCIASGNPTPDIGWTLDGFELPTNNRFVIGQFVSGHGDVI--SHVNISHVTVED 74
G L+C SG P P W L G E + Q S ++ S++ IS+VT +D
Sbjct: 236 GKDAVLECCVSGYPPPSFTW-LRGEE--------VIQLRSKKYSLLGGSNLLISNVTDDD 286
Query: 75 GGEYACVA----ENRAGTCEIT----------PYDSGPY-----------------LIAW 103
G Y CV EN + + E+T P + Y + W
Sbjct: 287 SGTYTCVVTYKNENISASAELTVLVPPWFLNHPSNLYAYESMDIEFECAVSGKPVPTVNW 346
Query: 104 FKDGR--------QIPGRTSSTSLVINPVGREDRGIYQCIARRSDGDVAQGSAEL 150
K+G QI G ++L I V + D G YQC+A G+ AQ SA+L
Sbjct: 347 MKNGDVVIPSDYFQIVG---GSNLRILGVVKSDEGFYQCVAENEAGN-AQSSAQL 397
Score = 35.0 bits (79), Expect = 0.050, Method: Compositional matrix adjust.
Identities = 35/136 (25%), Positives = 59/136 (43%), Gaps = 17/136 (12%)
Query: 101 IAWFKDGRQ---IPGRTS-----STSLVINPVGREDRGIYQCIARRSDGDVAQGSAELQL 152
I W K+ + IPG + S +L I+ + D G+Y+C AR AE+++
Sbjct: 153 IHWQKNQQDLNPIPGDSRVVVLPSGALQISRLQPGDSGVYRCSARNPASTRTGNEAEVRI 212
Query: 153 GGLP-------YVRLIPKVTAIDGEGLSIKCPVAGYPIEEVHWEKVPPKIESFAFPFDGL 205
P +++ V AI+G+ ++C V+GYP W + I+ + + L
Sbjct: 213 LSDPGLHRQLYFLQRPSNVIAIEGKDAVLECCVSGYPPPSFTWLRGEEVIQLRSKKYSLL 272
Query: 206 PEGARTRVICGVTHGD 221
G +I VT D
Sbjct: 273 --GGSNLLISNVTDDD 286
>pdb|2XY1|A Chain A, Crystal Structure Of Ncam2 Ig3-4
Length = 192
Score = 45.8 bits (107), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 42/169 (24%), Positives = 65/169 (38%), Gaps = 52/169 (30%)
Query: 13 TLQPGPAVSLKCIASGNPTPDIGWTLDGFELPTNNRFVIGQFVSGHGDVISHVNISHVTV 72
T + G ++ C ASG+P P I W +G + N ++++ G + + + ++
Sbjct: 15 TAERGEEMTFSCRASGSPEPAISWFRNGKLIEENEKYIL----KGSN---TELTVRNIIN 67
Query: 73 EDGGEYACVAENRAGTCEI------------------TPYDSGPYL------------IA 102
DGG Y C A N+AG E T Y++G I
Sbjct: 68 SDGGPYVCRATNKAGEDEKQAFLQVFVQPHIIQLKNETTYENGQVTLVCDAEGEPIPEIT 127
Query: 103 WFK--------------DGR-QIPGRTSSTSLVINPVGREDRGIYQCIA 136
W + DGR ++ G+ S+SL I V D G Y C A
Sbjct: 128 WKRAVDGFTFTEGDKSLDGRIEVKGQHGSSSLHIKDVKLSDSGRYDCEA 176
Score = 43.9 bits (102), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 35/139 (25%), Positives = 63/139 (45%), Gaps = 18/139 (12%)
Query: 101 IAWFKDGRQIPG------RTSSTSLVINPVGREDRGIYQCIARRSDGDVAQGSAELQLGG 154
I+WF++G+ I + S+T L + + D G Y C A G+ + A LQ+
Sbjct: 36 ISWFRNGKLIEENEKYILKGSNTELTVRNIINSDGGPYVCRATNKAGE-DEKQAFLQVFV 94
Query: 155 LPYVRLIPKVTAIDGEGLSIKCPVAGYPIEEVHWEKVPPKIESFAFPFDGLPEGART--- 211
P++ + T + +++ C G PI E+ W++ ++ F F EG ++
Sbjct: 95 QPHIIQLKNETTYENGQVTLVCDAEGEPIPEITWKRA---VDGFTF-----TEGDKSLDG 146
Query: 212 RVICGVTHGDPPLTIRWLK 230
R+ HG L I+ +K
Sbjct: 147 RIEVKGQHGSSSLHIKDVK 165
Score = 42.0 bits (97), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 31/88 (35%), Positives = 45/88 (51%), Gaps = 7/88 (7%)
Query: 11 EQTLQPGPAVSLKCIASGNPTPDIGW--TLDGFELPTNNRFVIGQF-VSG-HGDVISHVN 66
E T + G V+L C A G P P+I W +DGF ++ + G+ V G HG S ++
Sbjct: 104 ETTYENGQ-VTLVCDAEGEPIPEITWKRAVDGFTFTEGDKSLDGRIEVKGQHGS--SSLH 160
Query: 67 ISHVTVEDGGEYACVAENRAGTCEITPY 94
I V + D G Y C A +R G + + Y
Sbjct: 161 IKDVKLSDSGRYDCEAASRIGGHQKSMY 188
>pdb|3B43|A Chain A, I-band Fragment I65-i70 From Titin
Length = 570
Score = 45.4 bits (106), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 72/318 (22%), Positives = 105/318 (33%), Gaps = 97/318 (30%)
Query: 17 GPAVSLKCIASGNPTPDIGWTLDGFELPTNNRFVIGQFVSGHGDVISHVNISHVTVEDGG 76
G ++L+C G P I W + +L + + + QF + ++ I+ V D G
Sbjct: 20 GEPITLQCKVDGTPEIRIAWYKEHTKLRSAPAYKM-QFKNNVASLV----INKVDHSDVG 74
Query: 77 EYACVAENRAGT------------------------------------CEITPYDSGPYL 100
EY C AEN G C I S P
Sbjct: 75 EYTCKAENSVGAVASSAVLVIKERKLPPSFARKLKDVHETLGFPVAFECRIN--GSEPLQ 132
Query: 101 IAWFKDGRQIPGRTSSTSLVINPVG--------REDRGIYQCIARRSDGDVAQGSAELQL 152
++W+KDG + + + I+ V + G Y C A G A SA+L L
Sbjct: 133 VSWYKDGELLKDDANLQTSFIHNVATLQILQTDQSHVGQYNCSASNPLG-TASSSAKLTL 191
Query: 153 GGL---PYVRLIP-KVTAIDGEGLSIKCPVAGYPIEEVHWEKVPPKIESFAFPFDGLPEG 208
P+ L P V GE + KC V G ++ W K +I L E
Sbjct: 192 SEHEVPPFFDLKPVSVDLALGESGTFKCHVTGTAPIKITWAKDNREIRPGGNYKMTLVEN 251
Query: 209 ARTRVICGVTHGDPPLTIRWLKDGKPLSPRFPXXXXXXXXXXXXXXXXXXXAAHSGEYTC 268
T + VT GD +G+YTC
Sbjct: 252 TATLTVLKVTKGD-----------------------------------------AGQYTC 270
Query: 269 VASNTAAQARYSSKLQVK 286
ASN A + S++L V+
Sbjct: 271 YASNVAGKDSCSAQLGVQ 288
Score = 44.3 bits (103), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 52/213 (24%), Positives = 86/213 (40%), Gaps = 56/213 (26%)
Query: 23 KCIASGNPTPDIGWTLDGFELPTNNRFVIGQFVSGHGDVISHVNISHVTVEDGGEYACVA 82
+C G+P + W D E+ +++F + FV ++ + + +++VED G+Y C A
Sbjct: 312 ECKIGGSPEIKVLWYKDETEIQESSKFRMS-FVES----VAVLEMYNLSVEDSGDYTCEA 366
Query: 83 ENRAGT---------------------------------CEI--TPYDSGPYLIAWFKDG 107
N AG+ CE+ TP P+ ++W KD
Sbjct: 367 HNAAGSASSSTSLKVKEPPVFRKKPHPVETLKGADVHLECELQGTP----PFQVSWHKDK 422
Query: 108 RQ--------IPGRTSSTSLVINPVGREDRGIYQCIARRSDG-DVAQGSAELQLGGLP-Y 157
R+ I TS+ I V D G YQC A G D GS + L P +
Sbjct: 423 RELRSGKKYKIMSENFLTSIHILNVDSADIGEYQCKASNDVGSDTCVGS--ITLKAPPRF 480
Query: 158 VRLIPKVTAIDGEGLSIKCPVAGYPIEEVHWEK 190
V+ + ++ + GE + ++ + G V W K
Sbjct: 481 VKKLSDISTVVGEEVQLQATIEGAEPISVAWFK 513
Score = 41.6 bits (96), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 61/234 (26%), Positives = 88/234 (37%), Gaps = 58/234 (24%)
Query: 10 IEQTLQPGPAVSLKCIASGNPTPDIGWTLDGFELPTNNRFVIGQFVSGHGDV-ISHVNIS 68
+ +TL G V+ +C +G+ + W DG EL ++ + F+ + I + S
Sbjct: 111 VHETL--GFPVAFECRINGSEPLQVSWYKDG-ELLKDDANLQTSFIHNVATLQILQTDQS 167
Query: 69 HVTVEDGGEYACVAENRAGTC-----------EITPY-------------DSG------- 97
HV G+Y C A N GT E+ P+ +SG
Sbjct: 168 HV-----GQYNCSASNPLGTASSSAKLTLSEHEVPPFFDLKPVSVDLALGESGTFKCHVT 222
Query: 98 ---PYLIAWFKDGRQI-PGRTSSTSLVIN-------PVGREDRGIYQCIARRSDGDVAQG 146
P I W KD R+I PG +LV N V + D G Y C A G +
Sbjct: 223 GTAPIKITWAKDNREIRPGGNYKMTLVENTATLTVLKVTKGDAGQYTCYASNVAG---KD 279
Query: 147 SAELQLGGLPYVRLIPKV----TAIDGEGLSIKCPVAGYPIEEVHWEKVPPKIE 196
S QLG R I K+ E +C + G P +V W K +I+
Sbjct: 280 SCSAQLGVQEPPRFIKKLEPSRIVKQDEHTRYECKIGGSPEIKVLWYKDETEIQ 333
Score = 38.5 bits (88), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 55/237 (23%), Positives = 85/237 (35%), Gaps = 47/237 (19%)
Query: 2 PPILTYSFIEQTLQPGPAVSLKCIASGNPTPDIGWTLDGFELPTNNRFVIGQFVSGHGDV 61
PP + L G + + KC +G I W D E+ G + +
Sbjct: 197 PPFFDLKPVSVDLALGESGTFKCHVTGTAPIKITWAKDNREIRPG-----GNYKMTLVEN 251
Query: 62 ISHVNISHVTVEDGGEYACVAENRAG--TC-------------------------EITPY 94
+ + + VT D G+Y C A N AG +C E T Y
Sbjct: 252 TATLTVLKVTKGDAGQYTCYASNVAGKDSCSAQLGVQEPPRFIKKLEPSRIVKQDEHTRY 311
Query: 95 D-----SGPYLIAWFKDGRQIPGRT--------SSTSLVINPVGREDRGIYQCIARRSDG 141
+ S + W+KD +I + S L + + ED G Y C A + G
Sbjct: 312 ECKIGGSPEIKVLWYKDETEIQESSKFRMSFVESVAVLEMYNLSVEDSGDYTCEAHNAAG 371
Query: 142 DVAQGSAELQLGGLPYVRLIPK-VTAIDGEGLSIKCPVAGYPIEEVHWEKVPPKIES 197
A S L++ P R P V + G + ++C + G P +V W K ++ S
Sbjct: 372 -SASSSTSLKVKEPPVFRKKPHPVETLKGADVHLECELQGTPPFQVSWHKDKRELRS 427
Score = 37.0 bits (84), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 23/77 (29%), Positives = 37/77 (48%), Gaps = 6/77 (7%)
Query: 12 QTLQPGPAVSLKCIASGNPTPDIGWTLDGFELPTNNRFVIGQFVSGHGDVISHVNISHVT 71
+TL+ G V L+C G P + W D EL + ++ I + ++ ++I +V
Sbjct: 395 ETLK-GADVHLECELQGTPPFQVSWHKDKRELRSGKKYKIMS-----ENFLTSIHILNVD 448
Query: 72 VEDGGEYACVAENRAGT 88
D GEY C A N G+
Sbjct: 449 SADIGEYQCKASNDVGS 465
>pdb|2EDJ|A Chain A, Solution Structure Of The Fifth Ig-Like Domain From
Human Roundabout Homolog 2
Length = 100
Score = 44.7 bits (104), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 28/87 (32%), Positives = 40/87 (45%), Gaps = 9/87 (10%)
Query: 2 PPILTYSFIEQTLQPGPAVSLKCIASGNPTPDIGWTLDGFELPTNN-RFVIGQFVSGHGD 60
PPI+ QTL LKC A+G+P P I W +GF P + R I +
Sbjct: 8 PPIILQGPANQTLAVDGTALLKCKATGDPLPVISWLKEGFTFPGRDPRATIQEQ------ 61
Query: 61 VISHVNISHVTVEDGGEYACVAENRAG 87
+ I ++ + D G Y CVA + +G
Sbjct: 62 --GTLQIKNLRISDTGTYTCVATSSSG 86
Score = 31.2 bits (69), Expect = 0.73, Method: Compositional matrix adjust.
Identities = 16/51 (31%), Positives = 24/51 (47%), Gaps = 6/51 (11%)
Query: 100 LIAWFKDGRQIPGR------TSSTSLVINPVGREDRGIYQCIARRSDGDVA 144
+I+W K+G PGR +L I + D G Y C+A S G+ +
Sbjct: 39 VISWLKEGFTFPGRDPRATIQEQGTLQIKNLRISDTGTYTCVATSSSGETS 89
Score = 30.4 bits (67), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 19/66 (28%), Positives = 29/66 (43%), Gaps = 3/66 (4%)
Query: 220 GDPPLTIRWLKDGKPLSPRFPXXXXXXXXXXXXXXXXXXXAAHSGEYTCVASNTAAQARY 279
GDP I WLK+G R P + +G YTCVA++++ + +
Sbjct: 34 GDPLPVISWLKEGFTFPGRDPRATIQEQGTLQIKNLRI---SDTGTYTCVATSSSGETSW 90
Query: 280 SSKLQV 285
S+ L V
Sbjct: 91 SAVLDV 96
>pdb|2YD9|A Chain A, Crystal Structure Of The N-Terminal Ig1-3 Module Of Human
Receptor Protein Tyrosine Phosphatase Sigma
Length = 304
Score = 44.7 bits (104), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 60/239 (25%), Positives = 83/239 (34%), Gaps = 57/239 (23%)
Query: 2 PPILTYSFIEQTLQPGPAVSLKCIASGNPTPDIGWTLDGFELPTNNRFVIGQFVSGHGDV 61
PP +Q G S C A+G+P P + W G ++ + RF +F G V
Sbjct: 6 PPRFIKEPKDQIGVSGGVASFVCQATGDPKPRVTWNKKGKKV-NSQRFETIEFDESAGAV 64
Query: 62 ISHVNISHVTVEDGGEYACVAENRAGTCEITPY------------------DSGPYL--- 100
+ + T D Y CVA+N G EIT + D GP L
Sbjct: 65 LRIQPLR--TPRDENVYECVAQNSVG--EITVHAKLTVLREDQLPSGFPNIDMGPQLKVV 120
Query: 101 -------------------IAWFKDGRQIPGRTS--------STSLVINPVGREDRGIYQ 133
I WFKD + S S +L I D+G Y+
Sbjct: 121 ERTRTATMLCAASGNPDPEITWFKDFLPVDPSASNGRIKQLRSGALQIESSEETDQGKYE 180
Query: 134 CIARRSDGDVAQGSAELQL---GGLPYVRLIPKVTAI-DGEGLSIKCPVAGYPIEEVHW 188
C+A S G A L + P ++P I G ++I C G P+ V W
Sbjct: 181 CVATNSAGVRYSSPANLYVRVQNVAPRFSILPMSHEIMPGGNVNITCVAVGSPMPYVKW 239
Score = 35.8 bits (81), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 20/81 (24%), Positives = 34/81 (41%), Gaps = 11/81 (13%)
Query: 10 IEQTLQPGPAVSLKCIASGNPTPDIGWTLDGFELPTNNRFVIGQFVSGHGDVISHVNISH 69
+ + PG V++ C+A G+P P + W +L + +G+ V +
Sbjct: 213 MSHEIMPGGNVNITCVAVGSPMPYVKWMQGAEDLTPEDDMPVGRNV-----------LEL 261
Query: 70 VTVEDGGEYACVAENRAGTCE 90
V+D Y CVA + G E
Sbjct: 262 TDVKDSANYTCVAMSSLGVIE 282
Score = 32.3 bits (72), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 40/197 (20%), Positives = 66/197 (33%), Gaps = 57/197 (28%)
Query: 101 IAWFKDGRQIPGR---------TSSTSLVINPVGR-EDRGIYQCIARRSDGDVAQGSA-- 148
+ W K G+++ + ++ L I P+ D +Y+C+A+ S G++ +
Sbjct: 38 VTWNKKGKKVNSQRFETIEFDESAGAVLRIQPLRTPRDENVYECVAQNSVGEITVHAKLT 97
Query: 149 ---ELQL-GGLPYVRLIPKVTAIDGEGLSIKCPVAGYPIEEVHWEKVPPKIESFAFPFDG 204
E QL G P + + P++ +
Sbjct: 98 VLREDQLPSGFPNIDMGPQLKVV------------------------------------- 120
Query: 205 LPEGARTRVICGVTHGDPPLTIRWLKDGKPLSPRFPXXXXXXXXXXXXXXXXXXXAAHSG 264
E RT + G+P I W KD P+ P G
Sbjct: 121 --ERTRTATMLCAASGNPDPEITWFKDFLPVDPS-ASNGRIKQLRSGALQIESSEETDQG 177
Query: 265 EYTCVASNTAAQARYSS 281
+Y CVA+N+A RYSS
Sbjct: 178 KYECVATNSAG-VRYSS 193
>pdb|2YD1|A Chain A, Crystal Structure Of The N-Terminal Ig1-2 Module Of
Drosophila Receptor Protein Tyrosine Phosphatase Dlar
Length = 212
Score = 43.9 bits (102), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 27/87 (31%), Positives = 43/87 (49%), Gaps = 10/87 (11%)
Query: 3 PILTYSFIEQTLQPGPAVSLKCIASGNPTPDIGWTLDGFELPTNN-RFVIGQFVSGHGDV 61
P++T + ++ G V + C A GNPTP+I W + ++ +N R+ +
Sbjct: 111 PVITQGPGTRVIEVGHTVLMTCKAIGNPTPNIYWIKNQTKVDMSNPRYSLKD-------- 162
Query: 62 ISHVNISHVTVEDGGEYACVAENRAGT 88
+ I + ED G+Y CVAEN GT
Sbjct: 163 -GFLQIENSREEDQGKYECVAENSMGT 188
Score = 38.5 bits (88), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 35/131 (26%), Positives = 54/131 (41%), Gaps = 22/131 (16%)
Query: 98 PYLIAWFKDGRQIPGRTSSTS----------LVINPV--GREDRGIYQCIARRSDGDVAQ 145
P I W K+G+++ G S + L I PV GR+D Y+C+A GD
Sbjct: 35 PPSIVWRKNGKKVSGTQSRYTVLEQPGGISILRIEPVRAGRDD-APYECVAENGVGDAVS 93
Query: 146 GSAELQL-------GGLPYVRLIPKVTAID-GEGLSIKCPVAGYPIEEVHWEKVPPKIES 197
A L + G P + P I+ G + + C G P ++W K K++
Sbjct: 94 ADATLTIYEGDKTPAGFPVITQGPGTRVIEVGHTVLMTCKAIGNPTPNIYWIKNQTKVD- 152
Query: 198 FAFPFDGLPEG 208
+ P L +G
Sbjct: 153 MSNPRYSLKDG 163
Score = 35.4 bits (80), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 28/88 (31%), Positives = 40/88 (45%), Gaps = 6/88 (6%)
Query: 2 PPILTYSFIEQTLQPGPAVSLKCIASGNPTPDIGWTLDGFELP-TNNRFVIGQFVSGHGD 60
PP + Q ++ G S C A G+P P I W +G ++ T +R+ + + G
Sbjct: 6 PPEIIRKPQNQGVRVGGVASFYCAARGDPPPSIVWRKNGKKVSGTQSRYTVLEQPGG--- 62
Query: 61 VISHVNISHVTV-EDGGEYACVAENRAG 87
IS + I V D Y CVAEN G
Sbjct: 63 -ISILRIEPVRAGRDDAPYECVAENGVG 89
>pdb|2WIM|A Chain A, Crystal Structure Of Ncam2 Ig1-3
pdb|2WIM|B Chain B, Crystal Structure Of Ncam2 Ig1-3
Length = 291
Score = 43.9 bits (102), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 23/82 (28%), Positives = 40/82 (48%), Gaps = 7/82 (8%)
Query: 13 TLQPGPAVSLKCIASGNPTPDIGWTLDGFELPTNNRFVIGQFVSGHGDVISHVNISHVTV 72
T + G ++ C ASG+P P I W +G + N ++++ G + + + ++
Sbjct: 205 TAERGEEMTFSCRASGSPEPAISWFRNGKLIEENEKYIL----KGSN---TELTVRNIIN 257
Query: 73 EDGGEYACVAENRAGTCEITPY 94
DGG Y C A N+AG E +
Sbjct: 258 SDGGPYVCRATNKAGEDEKQAF 279
Score = 31.2 bits (69), Expect = 0.72, Method: Compositional matrix adjust.
Identities = 19/73 (26%), Positives = 31/73 (42%), Gaps = 1/73 (1%)
Query: 117 TSLVINPVGREDRGIYQCIARRSDGDVAQGSAELQL-GGLPYVRLIPKVTAIDGEGLSIK 175
+ L I ED GIY+C A + G + + L++ L + ++ GE +
Sbjct: 60 SRLTIYNANIEDAGIYRCQATDAKGQTQEATVVLEIYQKLTFREVVSPQEFKQGEDAEVV 119
Query: 176 CPVAGYPIEEVHW 188
C V+ P V W
Sbjct: 120 CRVSSSPAPAVSW 132
Score = 27.7 bits (60), Expect = 7.8, Method: Compositional matrix adjust.
Identities = 21/83 (25%), Positives = 34/83 (40%), Gaps = 5/83 (6%)
Query: 5 LTYSFIEQTLQPGPAVSLKCIASGNPTPDIGWTLDGFELPTNNRFVIGQFVSGHGDVISH 64
+T S + L G + C A G P + G ++ + R V+ + V S
Sbjct: 7 VTISLSKVELSVGESKFFTCTAIGEPESIDWYNPQGEKIISTQRVVVQK-----EGVRSR 61
Query: 65 VNISHVTVEDGGEYACVAENRAG 87
+ I + +ED G Y C A + G
Sbjct: 62 LTIYNANIEDAGIYRCQATDAKG 84
>pdb|2V5T|A Chain A, Crystal Structure Of Ncam2 Ig2-3
Length = 189
Score = 43.9 bits (102), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 23/82 (28%), Positives = 40/82 (48%), Gaps = 7/82 (8%)
Query: 13 TLQPGPAVSLKCIASGNPTPDIGWTLDGFELPTNNRFVIGQFVSGHGDVISHVNISHVTV 72
T + G ++ C ASG+P P I W +G + N ++++ G + + + ++
Sbjct: 109 TAERGEEMTFSCRASGSPEPAISWFRNGKLIEENEKYIL----KGSN---TELTVRNIIN 161
Query: 73 EDGGEYACVAENRAGTCEITPY 94
DGG Y C A N+AG E +
Sbjct: 162 SDGGPYVCRATNKAGEDEKQAF 183
>pdb|3PXJ|A Chain A, Tandem Ig Repeats Of Dlar
pdb|3PXJ|B Chain B, Tandem Ig Repeats Of Dlar
pdb|3PXJ|C Chain C, Tandem Ig Repeats Of Dlar
pdb|3PXJ|D Chain D, Tandem Ig Repeats Of Dlar
Length = 210
Score = 43.9 bits (102), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 27/87 (31%), Positives = 43/87 (49%), Gaps = 10/87 (11%)
Query: 3 PILTYSFIEQTLQPGPAVSLKCIASGNPTPDIGWTLDGFELPTNN-RFVIGQFVSGHGDV 61
P++T + ++ G V + C A GNPTP+I W + ++ +N R+ +
Sbjct: 113 PVITQGPGTRVIEVGHTVLMTCKAIGNPTPNIYWIKNQTKVDMSNPRYSLKD-------- 164
Query: 62 ISHVNISHVTVEDGGEYACVAENRAGT 88
+ I + ED G+Y CVAEN GT
Sbjct: 165 -GFLQIENSREEDQGKYECVAENSMGT 190
Score = 38.5 bits (88), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 32/119 (26%), Positives = 49/119 (41%), Gaps = 21/119 (17%)
Query: 98 PYLIAWFKDGRQIPGRTSSTS----------LVINPV--GREDRGIYQCIARRSDGDVAQ 145
P I W K+G+++ G S + L I PV GR+D Y+C+A GD
Sbjct: 37 PPSIVWRKNGKKVSGTQSRYTVLEQPGGISILRIEPVRAGRDD-APYECVAENGVGDAVS 95
Query: 146 GSAELQL-------GGLPYVRLIPKVTAID-GEGLSIKCPVAGYPIEEVHWEKVPPKIE 196
A L + G P + P I+ G + + C G P ++W K K++
Sbjct: 96 ADATLTIYEGDKTPAGFPVITQGPGTRVIEVGHTVLMTCKAIGNPTPNIYWIKNQTKVD 154
Score = 35.8 bits (81), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 28/88 (31%), Positives = 40/88 (45%), Gaps = 6/88 (6%)
Query: 2 PPILTYSFIEQTLQPGPAVSLKCIASGNPTPDIGWTLDGFELP-TNNRFVIGQFVSGHGD 60
PP + Q ++ G S C A G+P P I W +G ++ T +R+ + + G
Sbjct: 8 PPEIIRKPQNQGVRVGGVASFYCAARGDPPPSIVWRKNGKKVSGTQSRYTVLEQPGG--- 64
Query: 61 VISHVNISHVTV-EDGGEYACVAENRAG 87
IS + I V D Y CVAEN G
Sbjct: 65 -ISILRIEPVRAGRDDAPYECVAENGVG 91
>pdb|2YD5|A Chain A, Crystal Structure Of The N-Terminal Ig1-2 Module Of Human
Receptor Protein Tyrosine Phosphatase Lar
pdb|2YD8|A Chain A, Crystal Structure Of The N-Terminal Ig1-2 Module Of Human
Receptor Protein Tyrosine Phosphatase Lar In Complex
With Sucrose Octasulphate
Length = 214
Score = 43.9 bits (102), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 52/197 (26%), Positives = 71/197 (36%), Gaps = 57/197 (28%)
Query: 11 EQTLQPGPAVSLKCIASGNPTPDIGWTLDGFELPTNNRFVIGQFVSGHGDVISHVNISHV 70
+QT G S C A+G P P I W G ++ ++ RF + +F G G V+ I +
Sbjct: 15 DQTGLSGGVASFVCQATGEPKPRITWMKKGKKV-SSQRFEVIEFDDGAGSVL---RIQPL 70
Query: 71 TVE-DGGEYACVAENRAGTCEITP----------------YDSGPYL------------- 100
V+ D Y C A N G + D GP L
Sbjct: 71 RVQRDEAIYECTATNSLGEINTSAKLSVLEEEQLPPGFPSIDMGPQLKVVEKARTATMLC 130
Query: 101 ---------IAWFKDGRQIPGRTS--------STSLVINPVGREDRGIYQCIARRSDGDV 143
I+WFKD + TS S +L I D+G Y+C+A S G
Sbjct: 131 AAGGNPDPEISWFKDFLPVDPATSNGRIKQLRSGALQIESSEESDQGKYECVATNSAGTR 190
Query: 144 AQGSAELQLGGLPYVRL 160
A L YVR+
Sbjct: 191 YSAPANL------YVRV 201
Score = 37.4 bits (85), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 46/192 (23%), Positives = 71/192 (36%), Gaps = 47/192 (24%)
Query: 101 IAWFKDGRQIPGRT---------SSTSLVINPVG-REDRGIYQCIARRSDGDVAQGSAEL 150
I W K G+++ + + + L I P+ + D IY+C A S G++ SA+L
Sbjct: 38 ITWMKKGKKVSSQRFEVIEFDDGAGSVLRIQPLRVQRDEAIYECTATNSLGEI-NTSAKL 96
Query: 151 QLGGLPYVRLIPKVTAIDGEGLSIKCPVAGYPIEEVHWEKVPPKIESFAF-PFDGLPEGA 209
+ +EE E++PP S P + E A
Sbjct: 97 SV------------------------------LEE---EQLPPGFPSIDMGPQLKVVEKA 123
Query: 210 RTRVICGVTHGDPPLTIRWLKDGKPLSPRFPXXXXXXXXXXXXXXXXXXXAAHSGEYTCV 269
RT + G+P I W KD P+ P + G+Y CV
Sbjct: 124 RTATMLCAAGGNPDPEISWFKDFLPVDP-ATSNGRIKQLRSGALQIESSEESDQGKYECV 182
Query: 270 ASNTAAQARYSS 281
A+N+A RYS+
Sbjct: 183 ATNSAG-TRYSA 193
Score = 28.1 bits (61), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 21/79 (26%), Positives = 29/79 (36%), Gaps = 2/79 (2%)
Query: 208 GARTRVICGVTHGDPPLTIRWLKDGKPLSP-RFPXXXXXXXXXXXXXXXXXXXAAHSGEY 266
G +C T G+P I W+K GK +S RF Y
Sbjct: 21 GGVASFVCQAT-GEPKPRITWMKKGKKVSSQRFEVIEFDDGAGSVLRIQPLRVQRDEAIY 79
Query: 267 TCVASNTAAQARYSSKLQV 285
C A+N+ + S+KL V
Sbjct: 80 ECTATNSLGEINTSAKLSV 98
>pdb|3CAF|A Chain A, Crystal Structure Of Hfgfr2 D2 Domain
pdb|3CU1|A Chain A, Crystal Structure Of 2:2:2 Fgfr2d2:fgf1:sos Complex
pdb|3CU1|C Chain C, Crystal Structure Of 2:2:2 Fgfr2d2:fgf1:sos Complex
pdb|3EUU|A Chain A, Crystal Structure Of The Fgfr2 D2 Domain
pdb|3EUU|B Chain B, Crystal Structure Of The Fgfr2 D2 Domain
Length = 100
Score = 43.5 bits (101), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 27/86 (31%), Positives = 38/86 (44%), Gaps = 7/86 (8%)
Query: 10 IEQTLQPGPA---VSLKCIASGNPTPDIGWTLDGFELPTNNRFVIGQFVSGHGDVISHVN 66
+E+ L PA V +C A GNP P + W +G E +R + + H +I
Sbjct: 13 MEKRLHAVPAANTVKFRCPAGGNPMPTMRWLKNGKEFKQEHRIGGYKVRNQHWSLI---- 68
Query: 67 ISHVTVEDGGEYACVAENRAGTCEIT 92
+ V D G Y CV EN G+ T
Sbjct: 69 MESVVPSDKGNYTCVVENEYGSINHT 94
Score = 30.8 bits (68), Expect = 0.92, Method: Compositional matrix adjust.
Identities = 17/66 (25%), Positives = 23/66 (34%)
Query: 220 GDPPLTIRWLKDGKPLSPRFPXXXXXXXXXXXXXXXXXXXAAHSGEYTCVASNTAAQARY 279
G+P T+RWLK+GK + G YTCV N +
Sbjct: 34 GNPMPTMRWLKNGKEFKQEHRIGGYKVRNQHWSLIMESVVPSDKGNYTCVVENEYGSINH 93
Query: 280 SSKLQV 285
+ L V
Sbjct: 94 TYHLDV 99
>pdb|1WVZ|A Chain A, Solution Structure Of The D2 Domain Of The Fibroblast
Growth Factor
Length = 104
Score = 43.5 bits (101), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 27/86 (31%), Positives = 38/86 (44%), Gaps = 7/86 (8%)
Query: 10 IEQTLQPGPA---VSLKCIASGNPTPDIGWTLDGFELPTNNRFVIGQFVSGHGDVISHVN 66
+E+ L PA V +C A GNP P + W +G E +R + + H +I
Sbjct: 17 MEKRLHAVPAANTVKFRCPAGGNPMPTMRWLKNGKEFKQEHRIGGYKVRNQHWSLI---- 72
Query: 67 ISHVTVEDGGEYACVAENRAGTCEIT 92
+ V D G Y CV EN G+ T
Sbjct: 73 MESVVPSDKGNYTCVVENEYGSINHT 98
Score = 30.8 bits (68), Expect = 0.94, Method: Compositional matrix adjust.
Identities = 17/66 (25%), Positives = 23/66 (34%)
Query: 220 GDPPLTIRWLKDGKPLSPRFPXXXXXXXXXXXXXXXXXXXAAHSGEYTCVASNTAAQARY 279
G+P T+RWLK+GK + G YTCV N +
Sbjct: 38 GNPMPTMRWLKNGKEFKQEHRIGGYKVRNQHWSLIMESVVPSDKGNYTCVVENEYGSINH 97
Query: 280 SSKLQV 285
+ L V
Sbjct: 98 TYHLDV 103
>pdb|3DAR|A Chain A, Crystal Structure Of D2 Domain From Human Fgfr2
pdb|3DAR|B Chain B, Crystal Structure Of D2 Domain From Human Fgfr2
Length = 105
Score = 43.5 bits (101), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 27/86 (31%), Positives = 38/86 (44%), Gaps = 7/86 (8%)
Query: 10 IEQTLQPGPA---VSLKCIASGNPTPDIGWTLDGFELPTNNRFVIGQFVSGHGDVISHVN 66
+E+ L PA V +C A GNP P + W +G E +R + + H +I
Sbjct: 18 MEKRLHAVPAANTVKFRCPAGGNPMPTMRWLKNGKEFKQEHRIGGYKVRNQHWSLI---- 73
Query: 67 ISHVTVEDGGEYACVAENRAGTCEIT 92
+ V D G Y CV EN G+ T
Sbjct: 74 MESVVPSDKGNYTCVVENEYGSINHT 99
Score = 30.8 bits (68), Expect = 0.92, Method: Compositional matrix adjust.
Identities = 17/66 (25%), Positives = 23/66 (34%)
Query: 220 GDPPLTIRWLKDGKPLSPRFPXXXXXXXXXXXXXXXXXXXAAHSGEYTCVASNTAAQARY 279
G+P T+RWLK+GK + G YTCV N +
Sbjct: 39 GNPMPTMRWLKNGKEFKQEHRIGGYKVRNQHWSLIMESVVPSDKGNYTCVVENEYGSINH 98
Query: 280 SSKLQV 285
+ L V
Sbjct: 99 TYHLDV 104
>pdb|3OJM|B Chain B, Crystal Structure Of Fgf1 Complexed With The Ectodomain Of
Fgfr2b Harboring P253r Apert Mutation
Length = 231
Score = 43.1 bits (100), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 27/86 (31%), Positives = 38/86 (44%), Gaps = 7/86 (8%)
Query: 10 IEQTLQPGPA---VSLKCIASGNPTPDIGWTLDGFELPTNNRFVIGQFVSGHGDVISHVN 66
+E+ L PA V +C A GNP P + W +G E +R + + H +I
Sbjct: 24 MEKRLHAVPAANTVKFRCPAGGNPMPTMRWLKNGKEFKQEHRIGGYKVRNQHWSLI---- 79
Query: 67 ISHVTVEDGGEYACVAENRAGTCEIT 92
+ V D G Y CV EN G+ T
Sbjct: 80 MESVVPSDKGNYTCVVENEYGSINHT 105
Score = 30.8 bits (68), Expect = 1.00, Method: Compositional matrix adjust.
Identities = 17/66 (25%), Positives = 23/66 (34%)
Query: 220 GDPPLTIRWLKDGKPLSPRFPXXXXXXXXXXXXXXXXXXXAAHSGEYTCVASNTAAQARY 279
G+P T+RWLK+GK + G YTCV N +
Sbjct: 45 GNPMPTMRWLKNGKEFKQEHRIGGYKVRNQHWSLIMESVVPSDKGNYTCVVENEYGSINH 104
Query: 280 SSKLQV 285
+ L V
Sbjct: 105 TYHLDV 110
>pdb|3OJ2|C Chain C, Crystal Structure Of Fgf1 Complexed With The Ectodomain Of
Fgfr2b Harboring The A172f Pfeiffer Syndrome Mutation
pdb|3OJ2|D Chain D, Crystal Structure Of Fgf1 Complexed With The Ectodomain Of
Fgfr2b Harboring The A172f Pfeiffer Syndrome Mutation
Length = 231
Score = 43.1 bits (100), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 27/86 (31%), Positives = 38/86 (44%), Gaps = 7/86 (8%)
Query: 10 IEQTLQPGPA---VSLKCIASGNPTPDIGWTLDGFELPTNNRFVIGQFVSGHGDVISHVN 66
+E+ L PA V +C A GNP P + W +G E +R + + H +I
Sbjct: 24 MEKRLHAVPAFNTVKFRCPAGGNPMPTMRWLKNGKEFKQEHRIGGYKVRNQHWSLI---- 79
Query: 67 ISHVTVEDGGEYACVAENRAGTCEIT 92
+ V D G Y CV EN G+ T
Sbjct: 80 MESVVPSDKGNYTCVVENEYGSINHT 105
Score = 30.8 bits (68), Expect = 0.93, Method: Compositional matrix adjust.
Identities = 17/66 (25%), Positives = 23/66 (34%)
Query: 220 GDPPLTIRWLKDGKPLSPRFPXXXXXXXXXXXXXXXXXXXAAHSGEYTCVASNTAAQARY 279
G+P T+RWLK+GK + G YTCV N +
Sbjct: 45 GNPMPTMRWLKNGKEFKQEHRIGGYKVRNQHWSLIMESVVPSDKGNYTCVVENEYGSINH 104
Query: 280 SSKLQV 285
+ L V
Sbjct: 105 TYHLDV 110
>pdb|1II4|E Chain E, Crystal Structure Of Ser252trp Apert Mutant Fgf Receptor
2 (Fgfr2) In Complex With Fgf2
pdb|1II4|F Chain F, Crystal Structure Of Ser252trp Apert Mutant Fgf Receptor
2 (Fgfr2) In Complex With Fgf2
pdb|1II4|G Chain G, Crystal Structure Of Ser252trp Apert Mutant Fgf Receptor
2 (Fgfr2) In Complex With Fgf2
pdb|1II4|H Chain H, Crystal Structure Of Ser252trp Apert Mutant Fgf Receptor
2 (Fgfr2) In Complex With Fgf2
Length = 220
Score = 43.1 bits (100), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 27/86 (31%), Positives = 38/86 (44%), Gaps = 7/86 (8%)
Query: 10 IEQTLQPGPA---VSLKCIASGNPTPDIGWTLDGFELPTNNRFVIGQFVSGHGDVISHVN 66
+E+ L PA V +C A GNP P + W +G E +R + + H +I
Sbjct: 16 MEKRLHAVPAANTVKFRCPAGGNPMPTMRWLKNGKEFKQEHRIGGYKVRNQHWSLI---- 71
Query: 67 ISHVTVEDGGEYACVAENRAGTCEIT 92
+ V D G Y CV EN G+ T
Sbjct: 72 MESVVPSDKGNYTCVVENEYGSINHT 97
Score = 31.2 bits (69), Expect = 0.77, Method: Compositional matrix adjust.
Identities = 17/66 (25%), Positives = 23/66 (34%)
Query: 220 GDPPLTIRWLKDGKPLSPRFPXXXXXXXXXXXXXXXXXXXAAHSGEYTCVASNTAAQARY 279
G+P T+RWLK+GK + G YTCV N +
Sbjct: 37 GNPMPTMRWLKNGKEFKQEHRIGGYKVRNQHWSLIMESVVPSDKGNYTCVVENEYGSINH 96
Query: 280 SSKLQV 285
+ L V
Sbjct: 97 TYHLDV 102
Score = 28.5 bits (62), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 12/21 (57%), Positives = 14/21 (66%)
Query: 67 ISHVTVEDGGEYACVAENRAG 87
I +VT ED GEY C+A N G
Sbjct: 183 IRNVTFEDAGEYTCLAGNSIG 203
>pdb|1E0O|B Chain B, Crystal Structure Of A Ternary Fgf1-Fgfr2-Heparin
Complex
pdb|1E0O|D Chain D, Crystal Structure Of A Ternary Fgf1-Fgfr2-Heparin
Complex
Length = 219
Score = 43.1 bits (100), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 27/86 (31%), Positives = 38/86 (44%), Gaps = 7/86 (8%)
Query: 10 IEQTLQPGPA---VSLKCIASGNPTPDIGWTLDGFELPTNNRFVIGQFVSGHGDVISHVN 66
+E+ L PA V +C A GNP P + W +G E +R + + H +I
Sbjct: 15 MEKRLHAVPAANTVKFRCPAGGNPMPTMRWLKNGKEFKQEHRIGGYKVRNQHWSLI---- 70
Query: 67 ISHVTVEDGGEYACVAENRAGTCEIT 92
+ V D G Y CV EN G+ T
Sbjct: 71 MESVVPSDKGNYTCVVENEYGSINHT 96
Score = 30.8 bits (68), Expect = 0.78, Method: Compositional matrix adjust.
Identities = 17/66 (25%), Positives = 23/66 (34%)
Query: 220 GDPPLTIRWLKDGKPLSPRFPXXXXXXXXXXXXXXXXXXXAAHSGEYTCVASNTAAQARY 279
G+P T+RWLK+GK + G YTCV N +
Sbjct: 36 GNPMPTMRWLKNGKEFKQEHRIGGYKVRNQHWSLIMESVVPSDKGNYTCVVENEYGSINH 95
Query: 280 SSKLQV 285
+ L V
Sbjct: 96 TYHLDV 101
Score = 28.5 bits (62), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 12/21 (57%), Positives = 14/21 (66%)
Query: 67 ISHVTVEDGGEYACVAENRAG 87
I +VT ED GEY C+A N G
Sbjct: 182 IRNVTFEDAGEYTCLAGNSIG 202
>pdb|2FDB|P Chain P, Crystal Structure Of Fibroblast Growth Factor (Fgf)8b In
Complex With Fgf Receptor (Fgfr) 2c
pdb|2FDB|R Chain R, Crystal Structure Of Fibroblast Growth Factor (Fgf)8b In
Complex With Fgf Receptor (Fgfr) 2c
Length = 220
Score = 43.1 bits (100), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 27/86 (31%), Positives = 38/86 (44%), Gaps = 7/86 (8%)
Query: 10 IEQTLQPGPA---VSLKCIASGNPTPDIGWTLDGFELPTNNRFVIGQFVSGHGDVISHVN 66
+E+ L PA V +C A GNP P + W +G E +R + + H +I
Sbjct: 14 MEKRLHAVPAANTVKFRCPAGGNPMPTMRWLKNGKEFKQEHRIGGYKVRNQHWSLI---- 69
Query: 67 ISHVTVEDGGEYACVAENRAGTCEIT 92
+ V D G Y CV EN G+ T
Sbjct: 70 MESVVPSDKGNYTCVVENEYGSINHT 95
Score = 31.2 bits (69), Expect = 0.73, Method: Compositional matrix adjust.
Identities = 17/66 (25%), Positives = 23/66 (34%)
Query: 220 GDPPLTIRWLKDGKPLSPRFPXXXXXXXXXXXXXXXXXXXAAHSGEYTCVASNTAAQARY 279
G+P T+RWLK+GK + G YTCV N +
Sbjct: 35 GNPMPTMRWLKNGKEFKQEHRIGGYKVRNQHWSLIMESVVPSDKGNYTCVVENEYGSINH 94
Query: 280 SSKLQV 285
+ L V
Sbjct: 95 TYHLDV 100
Score = 28.1 bits (61), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 12/21 (57%), Positives = 14/21 (66%)
Query: 67 ISHVTVEDGGEYACVAENRAG 87
I +VT ED GEY C+A N G
Sbjct: 181 IRNVTFEDAGEYTCLAGNSIG 201
>pdb|1IIL|E Chain E, Crystal Structure Of Pro253arg Apert Mutant Fgf Receptor
2 (Fgfr2) In Complex With Fgf2
pdb|1IIL|F Chain F, Crystal Structure Of Pro253arg Apert Mutant Fgf Receptor
2 (Fgfr2) In Complex With Fgf2
pdb|1IIL|G Chain G, Crystal Structure Of Pro253arg Apert Mutant Fgf Receptor
2 (Fgfr2) In Complex With Fgf2
pdb|1IIL|H Chain H, Crystal Structure Of Pro253arg Apert Mutant Fgf Receptor
2 (Fgfr2) In Complex With Fgf2
Length = 220
Score = 43.1 bits (100), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 27/86 (31%), Positives = 38/86 (44%), Gaps = 7/86 (8%)
Query: 10 IEQTLQPGPA---VSLKCIASGNPTPDIGWTLDGFELPTNNRFVIGQFVSGHGDVISHVN 66
+E+ L PA V +C A GNP P + W +G E +R + + H +I
Sbjct: 16 MEKRLHAVPAANTVKFRCPAGGNPMPTMRWLKNGKEFKQEHRIGGYKVRNQHWSLI---- 71
Query: 67 ISHVTVEDGGEYACVAENRAGTCEIT 92
+ V D G Y CV EN G+ T
Sbjct: 72 MESVVPSDKGNYTCVVENEYGSINHT 97
Score = 31.2 bits (69), Expect = 0.73, Method: Compositional matrix adjust.
Identities = 17/66 (25%), Positives = 23/66 (34%)
Query: 220 GDPPLTIRWLKDGKPLSPRFPXXXXXXXXXXXXXXXXXXXAAHSGEYTCVASNTAAQARY 279
G+P T+RWLK+GK + G YTCV N +
Sbjct: 37 GNPMPTMRWLKNGKEFKQEHRIGGYKVRNQHWSLIMESVVPSDKGNYTCVVENEYGSINH 96
Query: 280 SSKLQV 285
+ L V
Sbjct: 97 TYHLDV 102
Score = 28.5 bits (62), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 12/21 (57%), Positives = 14/21 (66%)
Query: 67 ISHVTVEDGGEYACVAENRAG 87
I +VT ED GEY C+A N G
Sbjct: 183 IRNVTFEDAGEYTCLAGNSIG 203
>pdb|1EV2|E Chain E, Crystal Structure Of Fgf2 In Complex With The
Extracellular Ligand Binding Domain Of Fgf Receptor 2
(Fgfr2)
pdb|1EV2|F Chain F, Crystal Structure Of Fgf2 In Complex With The
Extracellular Ligand Binding Domain Of Fgf Receptor 2
(Fgfr2)
pdb|1EV2|G Chain G, Crystal Structure Of Fgf2 In Complex With The
Extracellular Ligand Binding Domain Of Fgf Receptor 2
(Fgfr2)
pdb|1EV2|H Chain H, Crystal Structure Of Fgf2 In Complex With The
Extracellular Ligand Binding Domain Of Fgf Receptor 2
(Fgfr2)
Length = 220
Score = 43.1 bits (100), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 27/86 (31%), Positives = 38/86 (44%), Gaps = 7/86 (8%)
Query: 10 IEQTLQPGPA---VSLKCIASGNPTPDIGWTLDGFELPTNNRFVIGQFVSGHGDVISHVN 66
+E+ L PA V +C A GNP P + W +G E +R + + H +I
Sbjct: 16 MEKRLHAVPAANTVKFRCPAGGNPMPTMRWLKNGKEFKQEHRIGGYKVRNQHWSLI---- 71
Query: 67 ISHVTVEDGGEYACVAENRAGTCEIT 92
+ V D G Y CV EN G+ T
Sbjct: 72 MESVVPSDKGNYTCVVENEYGSINHT 97
Score = 31.2 bits (69), Expect = 0.78, Method: Compositional matrix adjust.
Identities = 17/66 (25%), Positives = 23/66 (34%)
Query: 220 GDPPLTIRWLKDGKPLSPRFPXXXXXXXXXXXXXXXXXXXAAHSGEYTCVASNTAAQARY 279
G+P T+RWLK+GK + G YTCV N +
Sbjct: 37 GNPMPTMRWLKNGKEFKQEHRIGGYKVRNQHWSLIMESVVPSDKGNYTCVVENEYGSINH 96
Query: 280 SSKLQV 285
+ L V
Sbjct: 97 TYHLDV 102
Score = 28.1 bits (61), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 12/21 (57%), Positives = 14/21 (66%)
Query: 67 ISHVTVEDGGEYACVAENRAG 87
I +VT ED GEY C+A N G
Sbjct: 183 IRNVTFEDAGEYTCLAGNSIG 203
>pdb|3KLD|A Chain A, Ptprg Cntn4 Complex
Length = 384
Score = 42.7 bits (99), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 25/69 (36%), Positives = 34/69 (49%), Gaps = 9/69 (13%)
Query: 19 AVSLKCIASGNPTPDIGWTLDGFELPTNNRFVIGQFVSGHGDVISHVNISHVTVEDGGEY 78
+V +C A+G P P W +G L T +R I Q +NI+ V + D G Y
Sbjct: 312 SVFWECKANGRPKPTYRWLKNGDPLLTRDRIQIEQ---------GTLNITIVNLSDAGMY 362
Query: 79 ACVAENRAG 87
CVAEN+ G
Sbjct: 363 QCVAENKHG 371
Score = 42.0 bits (97), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 46/174 (26%), Positives = 62/174 (35%), Gaps = 46/174 (26%)
Query: 15 QPGPAVSLKCIASGNPTPDIGW-TLDGFELPTNNRFVIGQFVSGHGDVISHVNISHVTVE 73
+ G V L+C A GNP P I W DG + R + + I + E
Sbjct: 218 EKGTTVKLECFALGNPVPTILWRRADGKPIARKARRHKSNGI---------LEIPNFQQE 268
Query: 74 DGGEYACVAENRAGTC----EITPYDSGPYL---------------------------IA 102
D G Y CVAEN G ++T Y ++
Sbjct: 269 DAGSYECVAENSRGKNVAKGQLTFYAQPNWVQIINDIHVAMEESVFWECKANGRPKPTYR 328
Query: 103 WFKDGRQIPGR----TSSTSLVINPVGREDRGIYQCIARRSDGDVAQGSAELQL 152
W K+G + R +L I V D G+YQC+A G V SAEL +
Sbjct: 329 WLKNGDPLLTRDRIQIEQGTLNITIVNLSDAGMYQCVAENKHG-VIFSSAELSV 381
Score = 37.7 bits (86), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 73/375 (19%), Positives = 120/375 (32%), Gaps = 128/375 (34%)
Query: 20 VSLKCIASGNPTPDIGWTLDGFELPTNNRFVIGQFVSGHGDVISHVNISHVTVEDGGEYA 79
V L C GNP P I W L+G ++ F ++ G ++ +N + T +D G Y
Sbjct: 26 VKLSCEVKGNPKPHIRWKLNGTDVDIGMDF---RYSVVDGSLL--INNPNKT-QDAGTYQ 79
Query: 80 CVAENRAGT-----------------------------------CEITPYDSGPYLIAW- 103
C+A N GT C P+ SG AW
Sbjct: 80 CIATNSFGTIVSREAKLQFAYLENFKTRTRSTVSVRRGQGMVLLCGPPPH-SGELSYAWI 138
Query: 104 ------FKDGRQIPGRTSSTSLVINPVGREDRGIYQCIAR-----------------RSD 140
++D R+ + + +L I V + D G Y C+ R+D
Sbjct: 139 FNEYPSYQDNRRFVSQETG-NLYIAKVEKSDVGNYTCVVTNTVTNHKVLGPPTPLILRND 197
Query: 141 GDVAQGSAELQLGGLPYVRLIPKVTAIDGEGLSIKCPVAGYPIEEVHWEK---------- 190
G + + +++ V+ V A G + ++C G P+ + W +
Sbjct: 198 GVMGEYEPKIE------VQFPETVPAEKGTTVKLECFALGNPVPTILWRRADGKPIARKA 251
Query: 191 ----------VPPKIESFAFPFDGLPEGARTRVICG------------------------ 216
+P + A ++ + E +R + +
Sbjct: 252 RRHKSNGILEIPNFQQEDAGSYECVAENSRGKNVAKGQLTFYAQPNWVQIINDIHVAMEE 311
Query: 217 ------VTHGDPPLTIRWLKDGKPLSPRFPXXXXXXXXXXXXXXXXXXXAAHSGEYTCVA 270
+G P T RWLK+G PL R + +G Y CVA
Sbjct: 312 SVFWECKANGRPKPTYRWLKNGDPLLTR-----DRIQIEQGTLNITIVNLSDAGMYQCVA 366
Query: 271 SNTAAQARYSSKLQV 285
N S++L V
Sbjct: 367 ENKHGVIFSSAELSV 381
>pdb|3JXA|A Chain A, Immunoglobulin Domains 1-4 Of Mouse Cntn4
pdb|3JXA|B Chain B, Immunoglobulin Domains 1-4 Of Mouse Cntn4
Length = 383
Score = 42.7 bits (99), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 25/69 (36%), Positives = 34/69 (49%), Gaps = 9/69 (13%)
Query: 19 AVSLKCIASGNPTPDIGWTLDGFELPTNNRFVIGQFVSGHGDVISHVNISHVTVEDGGEY 78
+V +C A+G P P W +G L T +R I Q +NI+ V + D G Y
Sbjct: 311 SVFWECKANGRPKPTYRWLKNGDPLLTRDRIQIEQ---------GTLNITIVNLSDAGMY 361
Query: 79 ACVAENRAG 87
CVAEN+ G
Sbjct: 362 QCVAENKHG 370
Score = 42.0 bits (97), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 46/174 (26%), Positives = 62/174 (35%), Gaps = 46/174 (26%)
Query: 15 QPGPAVSLKCIASGNPTPDIGW-TLDGFELPTNNRFVIGQFVSGHGDVISHVNISHVTVE 73
+ G V L+C A GNP P I W DG + R + + I + E
Sbjct: 217 EKGTTVKLECFALGNPVPTILWRRADGKPIARKARRHKSNGI---------LEIPNFQQE 267
Query: 74 DGGEYACVAENRAGTC----EITPYDSGPYL---------------------------IA 102
D G Y CVAEN G ++T Y ++
Sbjct: 268 DAGSYECVAENSRGKNVAKGQLTFYAQPNWVQIINDIHVAMEESVFWECKANGRPKPTYR 327
Query: 103 WFKDGRQIPGR----TSSTSLVINPVGREDRGIYQCIARRSDGDVAQGSAELQL 152
W K+G + R +L I V D G+YQC+A G V SAEL +
Sbjct: 328 WLKNGDPLLTRDRIQIEQGTLNITIVNLSDAGMYQCVAENKHG-VIFSSAELSV 380
Score = 37.4 bits (85), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 73/375 (19%), Positives = 120/375 (32%), Gaps = 128/375 (34%)
Query: 20 VSLKCIASGNPTPDIGWTLDGFELPTNNRFVIGQFVSGHGDVISHVNISHVTVEDGGEYA 79
V L C GNP P I W L+G ++ F ++ G ++ +N + T +D G Y
Sbjct: 25 VKLSCEVKGNPKPHIRWKLNGTDVDIGMDF---RYSVVDGSLL--INNPNKT-QDAGTYQ 78
Query: 80 CVAENRAGT-----------------------------------CEITPYDSGPYLIAW- 103
C+A N GT C P+ SG AW
Sbjct: 79 CIATNSFGTIVSREAKLQFAYLENFKTRTRSTVSVRRGQGMVLLCGPPPH-SGELSYAWI 137
Query: 104 ------FKDGRQIPGRTSSTSLVINPVGREDRGIYQCIAR-----------------RSD 140
++D R+ + + +L I V + D G Y C+ R+D
Sbjct: 138 FNEYPSYQDNRRFVSQETG-NLYIAKVEKSDVGNYTCVVTNTVTNHKVLGPPTPLILRND 196
Query: 141 GDVAQGSAELQLGGLPYVRLIPKVTAIDGEGLSIKCPVAGYPIEEVHWEK---------- 190
G + + +++ V+ V A G + ++C G P+ + W +
Sbjct: 197 GVMGEYEPKIE------VQFPETVPAEKGTTVKLECFALGNPVPTILWRRADGKPIARKA 250
Query: 191 ----------VPPKIESFAFPFDGLPEGARTRVICG------------------------ 216
+P + A ++ + E +R + +
Sbjct: 251 RRHKSNGILEIPNFQQEDAGSYECVAENSRGKNVAKGQLTFYAQPNWVQIINDIHVAMEE 310
Query: 217 ------VTHGDPPLTIRWLKDGKPLSPRFPXXXXXXXXXXXXXXXXXXXAAHSGEYTCVA 270
+G P T RWLK+G PL R + +G Y CVA
Sbjct: 311 SVFWECKANGRPKPTYRWLKNGDPLLTR-----DRIQIEQGTLNITIVNLSDAGMYQCVA 365
Query: 271 SNTAAQARYSSKLQV 285
N S++L V
Sbjct: 366 ENKHGVIFSSAELSV 380
>pdb|1IE5|A Chain A, Nmr Structure Of The Third Immunoglobulin Domain From
The Neural Cell Adhesion Molecule
Length = 107
Score = 42.7 bits (99), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 27/85 (31%), Positives = 38/85 (44%), Gaps = 4/85 (4%)
Query: 8 SFIEQTLQPGPAVSLKCIASGNPTPDIGWTLDGFELPTNNRFVIGQFVSGHGDVISHVNI 67
S + T +V+L C A G P P + WT DG + + F ++I I
Sbjct: 19 STMNATANLSQSVTLACDADGFPEPTMTWTKDGEPIEQEDNEEKYSFNYDGSELI----I 74
Query: 68 SHVTVEDGGEYACVAENRAGTCEIT 92
V D EY C+AEN+AG + T
Sbjct: 75 KKVDKSDEAEYICIAENKAGEQDAT 99
Score = 32.3 bits (72), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 19/95 (20%), Positives = 34/95 (35%)
Query: 191 VPPKIESFAFPFDGLPEGARTRVICGVTHGDPPLTIRWLKDGKPLSPRFPXXXXXXXXXX 250
VPP + + + +++ + G P T+ W KDG+P+
Sbjct: 10 VPPSVRARQSTMNATANLSQSVTLACDADGFPEPTMTWTKDGEPIEQEDNEEKYSFNYDG 69
Query: 251 XXXXXXXXXAAHSGEYTCVASNTAAQARYSSKLQV 285
+ EY C+A N A + + L+V
Sbjct: 70 SELIIKKVDKSDEAEYICIAENKAGEQDATIHLKV 104
>pdb|2IEP|A Chain A, Crystal Structure Of Immunoglobulin-Like Domains 1 And 2
Of The Receptor Tyrosine Kinase Musk
pdb|2IEP|B Chain B, Crystal Structure Of Immunoglobulin-Like Domains 1 And 2
Of The Receptor Tyrosine Kinase Musk
Length = 192
Score = 42.7 bits (99), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 28/86 (32%), Positives = 38/86 (44%), Gaps = 8/86 (9%)
Query: 3 PILTYSFIEQTLQPGPAVSLKCIASGNPTPDIGWTLDGFELPTNNRFVIGQFVSGHGDVI 62
P +T I + G L C GNP P + W L N+R + + SG
Sbjct: 101 PKITRPPINVKIIEGLKAVLPCTTMGNPKPSVSWIKGDSALRENSRIAVLE--SGS---- 154
Query: 63 SHVNISHVTVEDGGEYACVAENRAGT 88
+ I +V ED G+Y CVA+N GT
Sbjct: 155 --LRIHNVQKEDAGQYRCVAKNSLGT 178
Score = 32.7 bits (73), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 35/174 (20%), Positives = 61/174 (35%), Gaps = 53/174 (30%)
Query: 21 SLKCIASGNPTPDIGWTLDGFELPTNNRFVIGQF-----VSGHGDVISHVNISHVTVEDG 75
+ C P P+I WT N+ +I F + +G +++ +++ D
Sbjct: 26 TFMCAVESYPQPEISWT--------RNKILIKLFDTRYSIRENGQLLTILSVED---SDD 74
Query: 76 GEYACVAENRAG----TCEITPYDSGPYL----------------------------IAW 103
G Y C A N G +C P + ++W
Sbjct: 75 GIYCCTANNGVGGAVESCGALQVKMKPKITRPPINVKIIEGLKAVLPCTTMGNPKPSVSW 134
Query: 104 FKDGRQIPGRT-----SSTSLVINPVGREDRGIYQCIARRSDGDVAQGSAELQL 152
K + + S SL I+ V +ED G Y+C+A+ S G +L++
Sbjct: 135 IKGDSALRENSRIAVLESGSLRIHNVQKEDAGQYRCVAKNSLGTAYSKLVKLEV 188
Score = 32.3 bits (72), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 34/120 (28%), Positives = 45/120 (37%), Gaps = 5/120 (4%)
Query: 72 VEDGGEYACVAENRAGTCEITPYDSGPYLIAWFKDGRQIPGRTSSTSLVINPVGREDRGI 131
VE+ + C E+ EI+ + LI F I R + L I V D GI
Sbjct: 21 VEEVATFMCAVESYPQP-EIS-WTRNKILIKLFDTRYSI--RENGQLLTILSVEDSDDGI 76
Query: 132 YQCIARRSDGDVAQGSAELQLGGLPYVRLIP-KVTAIDGEGLSIKCPVAGYPIEEVHWEK 190
Y C A G + LQ+ P + P V I+G + C G P V W K
Sbjct: 77 YCCTANNGVGGAVESCGALQVKMKPKITRPPINVKIIEGLKAVLPCTTMGNPKPSVSWIK 136
>pdb|2YD4|A Chain A, Crystal Structure Of The N-Terminal Ig1-2 Module Of
Chicken Receptor Protein Tyrosine Phosphatase Sigma
Length = 210
Score = 42.4 bits (98), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 48/189 (25%), Positives = 68/189 (35%), Gaps = 53/189 (28%)
Query: 1 TPPILTYSFIEQTLQPGPAVSLKCIASGNPTPDIGWTLDGFELPTNNRFVIGQFVSGHGD 60
+PP+ ++Q G S C A+G+P P + W G ++ + RF +F G
Sbjct: 5 SPPVFIKKPVDQIGVSGGVASFVCQATGDPKPRVTWNKKGKKV-NSQRFETIEFDESAGA 63
Query: 61 VISHVNISHVTVEDGGEYACVAENRAGTCEITPY------------------DSGPYL-- 100
V+ + T D Y CVA+N G E+T + D GP L
Sbjct: 64 VLRIQPLR--TPRDENIYECVAQNPHG--EVTVHAKLTVLREDQLPPGFPNIDMGPQLKV 119
Query: 101 --------------------IAWFKDGRQIPGRTS--------STSLVINPVGREDRGIY 132
I WFKD + TS S L I D+G Y
Sbjct: 120 VERTRTATMLCAASGNPDPEITWFKDFLPVDPSTSNGRIKQLRSGGLQIESSEETDQGKY 179
Query: 133 QCIARRSDG 141
+C+A S G
Sbjct: 180 ECVASNSAG 188
Score = 32.7 bits (73), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 43/191 (22%), Positives = 68/191 (35%), Gaps = 45/191 (23%)
Query: 101 IAWFKDGRQIPGR---------TSSTSLVINPVGR-EDRGIYQCIARRSDGDVAQGSAEL 150
+ W K G+++ + ++ L I P+ D IY+C+A+ G+V +
Sbjct: 38 VTWNKKGKKVNSQRFETIEFDESAGAVLRIQPLRTPRDENIYECVAQNPHGEV---TVHA 94
Query: 151 QLGGLPYVRLIPKVTAIDGEGLSIKCPVAGYPIEEVHWEKVPPKIESFAFPFDGLPEGAR 210
+L L +L P ID + P+++ + E R
Sbjct: 95 KLTVLREDQLPPGFPNID----------------------MGPQLK--------VVERTR 124
Query: 211 TRVICGVTHGDPPLTIRWLKDGKPLSPRFPXXXXXXXXXXXXXXXXXXXAAHSGEYTCVA 270
T + G+P I W KD P+ P G+Y CVA
Sbjct: 125 TATMLCAASGNPDPEITWFKDFLPVDPST-SNGRIKQLRSGGLQIESSEETDQGKYECVA 183
Query: 271 SNTAAQARYSS 281
SN+A RYSS
Sbjct: 184 SNSAG-VRYSS 193
>pdb|3PXH|A Chain A, Tandem Ig Domains Of Tyrosine Phosphatase Lar
Length = 201
Score = 42.4 bits (98), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 26/78 (33%), Positives = 36/78 (46%), Gaps = 7/78 (8%)
Query: 12 QTLQPGPAVSLKCIASGNPTPDIGWTLDGFEL-PTNNRFVIGQFVSGHGDVISHVNISHV 70
+ ++ G ++ C A GNP P+I W D + P + I Q SG + I
Sbjct: 119 KVVEKGRTATMLCAAGGNPDPEISWFKDFLPVDPAASNGRIKQLRSG------ALQIESS 172
Query: 71 TVEDGGEYACVAENRAGT 88
D G+Y CVA N AGT
Sbjct: 173 EESDQGKYECVATNSAGT 190
Score = 41.6 bits (96), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 53/206 (25%), Positives = 73/206 (35%), Gaps = 57/206 (27%)
Query: 1 TPPILTYSFIEQTLQPGPAVSLKCIASGNPTPDIGWTLDGFELPTNNRFVIGQFVSGHGD 60
+ P+ +QT G S C A+G P P I W G ++ ++ RF + +F G G
Sbjct: 6 SKPVFVKVPEDQTGLSGGVASFVCQATGEPKPRITWMKKGKKV-SSQRFEVIEFDDGAGS 64
Query: 61 VISHVNISHVTVE-DGGEYACVAENRAGTCEITP----------------YDSGPYL--- 100
V+ I + V+ D Y C A N G + D GP L
Sbjct: 65 VL---RIQPLRVQRDEAIYECTATNSLGEINTSAKLSVLEEDQLPSGFPTIDMGPQLKVV 121
Query: 101 -------------------IAWFKDGRQIP-----GRTS---STSLVINPVGREDRGIYQ 133
I+WFKD + GR S +L I D+G Y+
Sbjct: 122 EKGRTATMLCAAGGNPDPEISWFKDFLPVDPAASNGRIKQLRSGALQIESSEESDQGKYE 181
Query: 134 CIARRSDGDVAQGSAELQLGGLPYVR 159
C+A S G A L YVR
Sbjct: 182 CVATNSAGTRYSAPANL------YVR 201
Score = 36.6 bits (83), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 27/108 (25%), Positives = 49/108 (45%), Gaps = 19/108 (17%)
Query: 101 IAWFKDGRQIPGRT---------SSTSLVINPVG-REDRGIYQCIARRSDGDVAQGSAEL 150
I W K G+++ + + + L I P+ + D IY+C A S G++ SA+L
Sbjct: 39 ITWMKKGKKVSSQRFEVIEFDDGAGSVLRIQPLRVQRDEAIYECTATNSLGEI-NTSAKL 97
Query: 151 QL-------GGLPYVRLIPKVTAID-GEGLSIKCPVAGYPIEEVHWEK 190
+ G P + + P++ ++ G ++ C G P E+ W K
Sbjct: 98 SVLEEDQLPSGFPTIDMGPQLKVVEKGRTATMLCAAGGNPDPEISWFK 145
Score = 28.1 bits (61), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 21/79 (26%), Positives = 29/79 (36%), Gaps = 2/79 (2%)
Query: 208 GARTRVICGVTHGDPPLTIRWLKDGKPLSP-RFPXXXXXXXXXXXXXXXXXXXAAHSGEY 266
G +C T G+P I W+K GK +S RF Y
Sbjct: 22 GGVASFVCQAT-GEPKPRITWMKKGKKVSSQRFEVIEFDDGAGSVLRIQPLRVQRDEAIY 80
Query: 267 TCVASNTAAQARYSSKLQV 285
C A+N+ + S+KL V
Sbjct: 81 ECTATNSLGEINTSAKLSV 99
>pdb|2EO9|A Chain A, Solution Structure Of The Fifth Ig-Like Domain From
Human Roundabout Homo1
Length = 118
Score = 42.4 bits (98), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 26/93 (27%), Positives = 42/93 (45%), Gaps = 7/93 (7%)
Query: 2 PPILTYSFIEQTLQPGPAVSLKCIASGNPTPDIGWTLDGFELPTNNRFVIGQFVSGHGDV 61
PP++ + QT+ L C+A+G+P P I W DG + T + I Q +G
Sbjct: 8 PPVIRQGPVNQTVAVDGTFVLSCVATGSPVPTILWRKDGVLVSTQDSR-IKQLENG---- 62
Query: 62 ISHVNISHVTVEDGGEYACVAENRAGTCEITPY 94
+ I + + D G Y C+A +G + Y
Sbjct: 63 --VLQIRYAKLGDTGRYTCIASTPSGEATWSAY 93
Score = 30.0 bits (66), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 21/76 (27%), Positives = 33/76 (43%), Gaps = 3/76 (3%)
Query: 211 TRVICGVTHGDPPLTIRWLKDGKPLSPRFPXXXXXXXXXXXXXXXXXXXAAHSGEYTCVA 270
T V+ V G P TI W KDG +S + +G YTC+A
Sbjct: 25 TFVLSCVATGSPVPTILWRKDGVLVSTQ---DSRIKQLENGVLQIRYAKLGDTGRYTCIA 81
Query: 271 SNTAAQARYSSKLQVK 286
S + +A +S+ ++V+
Sbjct: 82 STPSGEATWSAYIEVQ 97
>pdb|2JLL|A Chain A, Crystal Structure Of Ncam2 Igiv-Fn3ii
Length = 389
Score = 42.0 bits (97), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 31/88 (35%), Positives = 45/88 (51%), Gaps = 7/88 (7%)
Query: 11 EQTLQPGPAVSLKCIASGNPTPDIGW--TLDGFELPTNNRFVIGQF-VSG-HGDVISHVN 66
E T + G V+L C A G P P+I W +DGF ++ + G+ V G HG S ++
Sbjct: 10 ETTYENG-QVTLVCDAEGEPIPEITWKRAVDGFTFTEGDKSLDGRIEVKGQHGS--SSLH 66
Query: 67 ISHVTVEDGGEYACVAENRAGTCEITPY 94
I V + D G Y C A +R G + + Y
Sbjct: 67 IKDVKLSDSGRYDCEAASRIGGHQKSMY 94
Score = 37.0 bits (84), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 20/72 (27%), Positives = 30/72 (41%), Gaps = 3/72 (4%)
Query: 17 GPAVSLKCIASGNPTPDIGWTLDGFELPTNNRFVIGQFVSGHGDVISHVNISHVTVEDGG 76
G +++ C NP I W D LP N + + +G ++ I+ + D G
Sbjct: 115 GNPINISCDVKSNPPASIHWRRDKLVLPAKNTTNLKTYSTGRKMILE---IAPTSDNDFG 171
Query: 77 EYACVAENRAGT 88
Y C A N GT
Sbjct: 172 RYNCTATNHIGT 183
Score = 33.5 bits (75), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 28/89 (31%), Positives = 40/89 (44%), Gaps = 7/89 (7%)
Query: 106 DGR-QIPGRTSSTSLVINPVGREDRGIYQCIARRSDGDVAQGSAELQLGGLPYVRLIPKV 164
DGR ++ G+ S+SL I V D G Y C A G Q S L + P + I
Sbjct: 51 DGRIEVKGQHGSSSLHIKDVKLSDSGRYDCEAASRIGG-HQKSMYLDIEYAP--KFISNQ 107
Query: 165 T---AIDGEGLSIKCPVAGYPIEEVHWEK 190
T + +G ++I C V P +HW +
Sbjct: 108 TIYYSWEGNPINISCDVKSNPPASIHWRR 136
>pdb|3S97|C Chain C, Ptprz Cntn1 Complex
pdb|3S97|D Chain D, Ptprz Cntn1 Complex
Length = 201
Score = 42.0 bits (97), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 27/71 (38%), Positives = 34/71 (47%), Gaps = 9/71 (12%)
Query: 17 GPAVSLKCIASGNPTPDIGWTLDGFELPTNNRFVIGQFVSGHGDVISHVNISHVTVEDGG 76
G V+L+C A GNP PDI W +P+ +S G V+ NI +ED G
Sbjct: 128 GQNVTLECFALGNPVPDIRWRKVLEPMPSTAE------ISTSGAVLKIFNIQ---LEDEG 178
Query: 77 EYACVAENRAG 87
Y C AEN G
Sbjct: 179 IYECEAENIRG 189
Score = 29.3 bits (64), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 22/96 (22%), Positives = 39/96 (40%), Gaps = 11/96 (11%)
Query: 106 DGRQIPGRTSSTSLVINPVGREDRGIYQCIARRSDGDVAQGSAELQLGGLP--------- 156
D R+ +T+ + N V D+G Y C + S + L +P
Sbjct: 56 DKRRFVSQTNGNLYIAN-VEASDKGNYSCFVSSPSITKSVFSKFIPLIPIPERTTKPYPA 114
Query: 157 -YVRLIPKVTAIDGEGLSIKCPVAGYPIEEVHWEKV 191
V V A+ G+ ++++C G P+ ++ W KV
Sbjct: 115 DIVVQFKDVYALMGQNVTLECFALGNPVPDIRWRKV 150
>pdb|3GRW|A Chain A, Fgfr3 In Complex With A Fab
Length = 241
Score = 42.0 bits (97), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 26/73 (35%), Positives = 34/73 (46%), Gaps = 4/73 (5%)
Query: 20 VSLKCIASGNPTPDIGWTLDGFELPTNNRFVIGQFVSGHGDVISHVNISHVTVEDGGEYA 79
V +C A+GNPTP I W +G E +R IG H + + V D G Y
Sbjct: 33 VRFRCPAAGNPTPSISWLKNGREFRGEHR--IGGIKLRHQQW--SLVMESVVPSDRGNYT 88
Query: 80 CVAENRAGTCEIT 92
CV EN+ G+ T
Sbjct: 89 CVVENKFGSIRQT 101
Score = 34.7 bits (78), Expect = 0.058, Method: Compositional matrix adjust.
Identities = 27/104 (25%), Positives = 39/104 (37%), Gaps = 14/104 (13%)
Query: 101 IAWFKDGRQIPG---------RTSSTSLVINPVGREDRGIYQCIARRSDGDVAQGSAELQ 151
I+W K+GR+ G R SLV+ V DRG Y C+ G + Q
Sbjct: 47 ISWLKNGREFRGEHRIGGIKLRHQQWSLVMESVVPSDRGNYTCVVENKFGSIRQTYTLDV 106
Query: 152 LGGLPYVRLI-----PKVTAIDGEGLSIKCPVAGYPIEEVHWEK 190
L P+ ++ TA+ G + C V + W K
Sbjct: 107 LERSPHRPILQAGLPANQTAVLGSDVEFHCKVYSDAQPHIQWLK 150
Score = 31.2 bits (69), Expect = 0.64, Method: Compositional matrix adjust.
Identities = 26/96 (27%), Positives = 41/96 (42%), Gaps = 8/96 (8%)
Query: 3 PILTYSF-IEQTLQPGPAVSLKCIASGNPTPDIGW----TLDGFEL-PTNNRFV--IGQF 54
PIL QT G V C + P I W ++G ++ P +V + +
Sbjct: 114 PILQAGLPANQTAVLGSDVEFHCKVYSDAQPHIQWLKHVEVNGSKVGPDGTPYVTVLKSW 173
Query: 55 VSGHGDVISHVNISHVTVEDGGEYACVAENRAGTCE 90
+S + + +++V+ DGGEY C A N G E
Sbjct: 174 ISESVEADVRLRLANVSERDGGEYLCRATNFIGVAE 209
>pdb|2XYC|A Chain A, Crystal Structure Of Ncam2 Igiv-Fn3i
Length = 291
Score = 42.0 bits (97), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 31/88 (35%), Positives = 45/88 (51%), Gaps = 7/88 (7%)
Query: 11 EQTLQPGPAVSLKCIASGNPTPDIGW--TLDGFELPTNNRFVIGQF-VSG-HGDVISHVN 66
E T + G V+L C A G P P+I W +DGF ++ + G+ V G HG S ++
Sbjct: 10 ETTYENG-QVTLVCDAEGEPIPEITWKRAVDGFTFTEGDKSLDGRIEVKGQHGS--SSLH 66
Query: 67 ISHVTVEDGGEYACVAENRAGTCEITPY 94
I V + D G Y C A +R G + + Y
Sbjct: 67 IKDVKLSDSGRYDCEAASRIGGHQKSMY 94
Score = 36.6 bits (83), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 20/72 (27%), Positives = 30/72 (41%), Gaps = 3/72 (4%)
Query: 17 GPAVSLKCIASGNPTPDIGWTLDGFELPTNNRFVIGQFVSGHGDVISHVNISHVTVEDGG 76
G +++ C NP I W D LP N + + +G ++ I+ + D G
Sbjct: 115 GNPINISCDVKSNPPASIHWRRDKLVLPAKNTTNLKTYSTGRKMILE---IAPTSDNDFG 171
Query: 77 EYACVAENRAGT 88
Y C A N GT
Sbjct: 172 RYNCTATNHIGT 183
Score = 33.5 bits (75), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 28/89 (31%), Positives = 40/89 (44%), Gaps = 7/89 (7%)
Query: 106 DGR-QIPGRTSSTSLVINPVGREDRGIYQCIARRSDGDVAQGSAELQLGGLPYVRLIPKV 164
DGR ++ G+ S+SL I V D G Y C A G Q S L + P + I
Sbjct: 51 DGRIEVKGQHGSSSLHIKDVKLSDSGRYDCEAASRIGG-HQKSMYLDIEYAP--KFISNQ 107
Query: 165 T---AIDGEGLSIKCPVAGYPIEEVHWEK 190
T + +G ++I C V P +HW +
Sbjct: 108 TIYYSWEGNPINISCDVKSNPPASIHWRR 136
>pdb|2VRA|A Chain A, Drosophila Robo Ig1-2 (Monoclinic Form)
pdb|2VRA|B Chain B, Drosophila Robo Ig1-2 (Monoclinic Form)
pdb|2VRA|C Chain C, Drosophila Robo Ig1-2 (Monoclinic Form)
pdb|2VRA|D Chain D, Drosophila Robo Ig1-2 (Monoclinic Form)
Length = 208
Score = 42.0 bits (97), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 25/68 (36%), Positives = 33/68 (48%), Gaps = 3/68 (4%)
Query: 21 SLKCIASGNPTPDIGWTLDGFELPTNNRFVIG-QFVSGHGDVISHVNISHVTVEDGGEYA 79
+L C G P P I W DG + TN + QF G + + + +DGGEY
Sbjct: 28 TLNCKVEGKPEPTIEWFKDGEPVSTNEKKSHRVQFKDGA--LFFYRTMQGKKEQDGGEYW 85
Query: 80 CVAENRAG 87
CVA+NR G
Sbjct: 86 CVAKNRVG 93
Score = 30.4 bits (67), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 21/66 (31%), Positives = 31/66 (46%), Gaps = 4/66 (6%)
Query: 27 SGNPTPDIGWTLDGFELPTNNRFVIGQFVSGHGDVISHVN--ISHVTVEDGGEYACVAEN 84
G P P + W DG +P ++ + S ++ N IS+V D G Y C+A+N
Sbjct: 134 KGIPEPTLIWIKDG--VPLDDLKAMSFGASSRVRIVDGGNLLISNVEPIDEGNYKCIAQN 191
Query: 85 RAGTCE 90
GT E
Sbjct: 192 LVGTRE 197
Score = 30.0 bits (66), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 30/105 (28%), Positives = 41/105 (39%), Gaps = 15/105 (14%)
Query: 101 IAWFKDGRQIPGRTSSTSLVINPVG------------REDRGIYQCIARRSDGDVAQGSA 148
I WFKDG + + V G +D G Y C+A+ G A
Sbjct: 41 IEWFKDGEPVSTNEKKSHRVQFKDGALFFYRTMQGKKEQDGGEYWCVAKNRVGQAVSRHA 100
Query: 149 ELQLGGL-PYVRLIPKVTAI-DGEGLSIKC-PVAGYPIEEVHWEK 190
LQ+ L R+ PK T + GE ++C P G P + W K
Sbjct: 101 SLQIAVLRDDFRVEPKDTRVAKGETALLECGPPKGIPEPTLIWIK 145
>pdb|2VR9|A Chain A, Drosophila Robo Ig1-2 (Tetragonal Form)
pdb|2VR9|B Chain B, Drosophila Robo Ig1-2 (Tetragonal Form)
pdb|2VR9|C Chain C, Drosophila Robo Ig1-2 (Tetragonal Form)
Length = 217
Score = 42.0 bits (97), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 25/68 (36%), Positives = 33/68 (48%), Gaps = 3/68 (4%)
Query: 21 SLKCIASGNPTPDIGWTLDGFELPTNNRFVIG-QFVSGHGDVISHVNISHVTVEDGGEYA 79
+L C G P P I W DG + TN + QF G + + + +DGGEY
Sbjct: 28 TLNCKVEGKPEPTIEWFKDGEPVSTNEKKSHRVQFKDGA--LFFYRTMQGKKEQDGGEYW 85
Query: 80 CVAENRAG 87
CVA+NR G
Sbjct: 86 CVAKNRVG 93
Score = 30.4 bits (67), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 21/66 (31%), Positives = 31/66 (46%), Gaps = 4/66 (6%)
Query: 27 SGNPTPDIGWTLDGFELPTNNRFVIGQFVSGHGDVISHVN--ISHVTVEDGGEYACVAEN 84
G P P + W DG +P ++ + S ++ N IS+V D G Y C+A+N
Sbjct: 134 KGIPEPTLIWIKDG--VPLDDLKAMSFGASSRVRIVDGGNLLISNVEPIDEGNYKCIAQN 191
Query: 85 RAGTCE 90
GT E
Sbjct: 192 LVGTRE 197
Score = 30.0 bits (66), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 30/105 (28%), Positives = 41/105 (39%), Gaps = 15/105 (14%)
Query: 101 IAWFKDGRQIPGRTSSTSLVINPVG------------REDRGIYQCIARRSDGDVAQGSA 148
I WFKDG + + V G +D G Y C+A+ G A
Sbjct: 41 IEWFKDGEPVSTNEKKSHRVQFKDGALFFYRTMQGKKEQDGGEYWCVAKNRVGQAVSRHA 100
Query: 149 ELQLGGL-PYVRLIPKVTAI-DGEGLSIKC-PVAGYPIEEVHWEK 190
LQ+ L R+ PK T + GE ++C P G P + W K
Sbjct: 101 SLQIAVLRDDFRVEPKDTRVAKGETALLECGPPKGIPEPTLIWIK 145
>pdb|2KDG|A Chain A, Solution Structure Of The 1st Ig Domain Of Myotilin
Length = 100
Score = 41.6 bits (96), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 25/81 (30%), Positives = 37/81 (45%), Gaps = 4/81 (4%)
Query: 12 QTLQPGPAVSLKCIASGNPTPDIGWTLDGFELPTNNRFVIGQFVSGHGDVISHVNISHVT 71
++ G + SG P PD+ W L+G + +++ + G +I V V
Sbjct: 15 MSIDEGRFCRMDFKVSGLPAPDVSWYLNGRTVQSDDLHKMIVSEKGLHSLIFEV----VR 70
Query: 72 VEDGGEYACVAENRAGTCEIT 92
D G YACVA+NRAG T
Sbjct: 71 ASDAGAYACVAKNRAGEATFT 91
Score = 27.7 bits (60), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 11/26 (42%), Positives = 17/26 (65%)
Query: 260 AAHSGEYTCVASNTAAQARYSSKLQV 285
A+ +G Y CVA N A +A ++ +L V
Sbjct: 71 ASDAGAYACVAKNRAGEATFTVQLDV 96
>pdb|1RY7|B Chain B, Crystal Structure Of The 3 Ig Form Of Fgfr3c In Complex
With Fgf1
Length = 334
Score = 41.6 bits (96), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 26/73 (35%), Positives = 34/73 (46%), Gaps = 4/73 (5%)
Query: 20 VSLKCIASGNPTPDIGWTLDGFELPTNNRFVIGQFVSGHGDVISHVNISHVTVEDGGEYA 79
V +C A+GNPTP I W +G E +R IG H + + V D G Y
Sbjct: 141 VRFRCPAAGNPTPSISWLKNGREFRGEHR--IGGIKLRHQQW--SLVMESVVPSDRGNYT 196
Query: 80 CVAENRAGTCEIT 92
CV EN+ G+ T
Sbjct: 197 CVVENKFGSIRQT 209
Score = 35.0 bits (79), Expect = 0.045, Method: Compositional matrix adjust.
Identities = 27/104 (25%), Positives = 39/104 (37%), Gaps = 14/104 (13%)
Query: 101 IAWFKDGRQIPG---------RTSSTSLVINPVGREDRGIYQCIARRSDGDVAQGSAELQ 151
I+W K+GR+ G R SLV+ V DRG Y C+ G + Q
Sbjct: 155 ISWLKNGREFRGEHRIGGIKLRHQQWSLVMESVVPSDRGNYTCVVENKFGSIRQTYTLDV 214
Query: 152 LGGLPYVRLI-----PKVTAIDGEGLSIKCPVAGYPIEEVHWEK 190
L P+ ++ TA+ G + C V + W K
Sbjct: 215 LERSPHRPILQAGLPANQTAVLGSDVEFHCKVYSDAQPHIQWLK 258
Score = 29.6 bits (65), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 26/94 (27%), Positives = 39/94 (41%), Gaps = 9/94 (9%)
Query: 3 PILTYSF-IEQTLQPGPAVSLKCIASGNPTPDIGW----TLDGFEL-PTNNRFVIGQFVS 56
PIL QT G V C + P I W ++G ++ P +V +
Sbjct: 222 PILQAGLPANQTAVLGSDVEFHCKVYSDAQPHIQWLKHVEVNGSKVGPDGTPYVTVLKTA 281
Query: 57 GHGDV---ISHVNISHVTVEDGGEYACVAENRAG 87
G + +++ +VT ED GEY C+A N G
Sbjct: 282 GANTTDKELEVLSLHNVTFEDAGEYTCLAGNSIG 315
>pdb|3KVQ|A Chain A, Crystal Structure Of Vegfr2 Extracellular Domain D7
Length = 108
Score = 41.6 bits (96), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 27/92 (29%), Positives = 41/92 (44%), Gaps = 7/92 (7%)
Query: 3 PILTYSFIEQTLQPGPAVSLKCIASGNPTPDIGWTLDGFELPTNNRFVIGQFVSGHGDVI 62
P +T + QT G ++ + C ASGNP P I W D L ++ V+ D
Sbjct: 11 PTITGNLENQTTSIGESIEVSCTASGNPPPQIMWFKDNETLVEDSGIVL-------KDGN 63
Query: 63 SHVNISHVTVEDGGEYACVAENRAGTCEITPY 94
++ I V ED G Y C A + G ++ +
Sbjct: 64 RNLTIRRVRKEDEGLYTCQACSVLGCAKVEAF 95
Score = 28.9 bits (63), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 16/45 (35%), Positives = 21/45 (46%), Gaps = 6/45 (13%)
Query: 98 PYLIAWFKDGRQ------IPGRTSSTSLVINPVGREDRGIYQCIA 136
P I WFKD I + + +L I V +ED G+Y C A
Sbjct: 39 PPQIMWFKDNETLVEDSGIVLKDGNRNLTIRRVRKEDEGLYTCQA 83
>pdb|3V2A|R Chain R, Vegfr-2VEGF-A Complex Structure
Length = 772
Score = 41.2 bits (95), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 27/92 (29%), Positives = 41/92 (44%), Gaps = 7/92 (7%)
Query: 3 PILTYSFIEQTLQPGPAVSLKCIASGNPTPDIGWTLDGFELPTNNRFVIGQFVSGHGDVI 62
P +T + QT G ++ + C ASGNP P I W D L ++ V+ D
Sbjct: 667 PTITGNLENQTTSIGESIEVSCTASGNPPPQIMWFKDNETLVEDSGIVL-------KDGN 719
Query: 63 SHVNISHVTVEDGGEYACVAENRAGTCEITPY 94
++ I V ED G Y C A + G ++ +
Sbjct: 720 RNLTIRRVRKEDEGLYTCQACSVLGCAKVEAF 751
Score = 32.7 bits (73), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 44/189 (23%), Positives = 70/189 (37%), Gaps = 64/189 (33%)
Query: 11 EQTLQPG------PAVSLKCIASGNPTPDIGWTLDG--------FELPT---NN-----R 48
E TLQP +VSL C A + ++ W G ELPT N +
Sbjct: 552 EITLQPDMQPTEQESVSLWCTADRSTFENLTWYKLGPQPLPIHVGELPTPVCKNLDTLWK 611
Query: 49 FVIGQFVSGHGDVISHVNISHVTVEDGGEYACVAENRAG--------------------- 87
F + D++ + + + +++D G+Y C+A++R
Sbjct: 612 LNATMFSNSTNDILI-MELKNASLQDQGDYVCLAQDRKTKKRHCVVRQLTVLERVAPTIT 670
Query: 88 ------------TCEITPYDSG--PYLIAWFKDGRQ------IPGRTSSTSLVINPVGRE 127
+ E++ SG P I WFKD I + + +L I V +E
Sbjct: 671 GNLENQTTSIGESIEVSCTASGNPPPQIMWFKDNETLVEDSGIVLKDGNRNLTIRRVRKE 730
Query: 128 DRGIYQCIA 136
D G+Y C A
Sbjct: 731 DEGLYTCQA 739
Score = 32.0 bits (71), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 26/85 (30%), Positives = 40/85 (47%), Gaps = 5/85 (5%)
Query: 117 TSLVINPVGREDRGIYQCIARRSDGDVAQGSAELQLGGLPYVR----LIPKVTAIDGEGL 172
++L I+ V R D+G+Y C A S + S +++ P+V + V A GE +
Sbjct: 290 STLTIDGVTRSDQGLYTC-AASSGLMTKKNSTFVRVHEKPFVAFGSGMESLVEATVGERV 348
Query: 173 SIKCPVAGYPIEEVHWEKVPPKIES 197
I GYP E+ W K +ES
Sbjct: 349 RIPAKYLGYPPPEIKWYKNGIPLES 373
>pdb|3LCY|A Chain A, Titin Ig Tandem Domains A164-A165
pdb|3LCY|B Chain B, Titin Ig Tandem Domains A164-A165
pdb|3LCY|C Chain C, Titin Ig Tandem Domains A164-A165
pdb|3LCY|D Chain D, Titin Ig Tandem Domains A164-A165
Length = 197
Score = 40.0 bits (92), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 24/80 (30%), Positives = 33/80 (41%), Gaps = 5/80 (6%)
Query: 13 TLQPGPAVSLKCIASGNPTPDIGWTLDGFELPTNNRFVIGQFVSGHGDVISHVNISHVTV 72
T + G A L C G P PDI W G EL + ++ + H + +
Sbjct: 18 TTKLGEAAQLSCQIVGRPLPDIKWYRFGKELIQSRKYKMSSDGRTHT-----LTVMTEEQ 72
Query: 73 EDGGEYACVAENRAGTCEIT 92
ED G Y C+A N G E +
Sbjct: 73 EDEGVYTCIATNEVGEVETS 92
Score = 33.1 bits (74), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 26/102 (25%), Positives = 44/102 (43%), Gaps = 17/102 (16%)
Query: 101 IAWFKDGRQI----------PGRTSSTSLVINPVGREDRGIYQCIARRSDGDVAQGSAEL 150
I W++ G+++ GRT + +++ +ED G+Y CIA G+V + S++L
Sbjct: 39 IKWYRFGKELIQSRKYKMSSDGRTHTLTVMTEE--QEDEGVYTCIATNEVGEV-ETSSKL 95
Query: 151 QLGGLPYVR----LIPKVTAIDGEGLSIKCPVAGYPIEEVHW 188
L P L K G L + G P+ + W
Sbjct: 96 LLQATPQFHPGYPLKEKYYGAVGSTLRLHVMYIGRPVPAMTW 137
>pdb|1NUN|B Chain B, Crystal Structure Analysis Of The Fgf10-fgfr2b Complex
Length = 230
Score = 40.0 bits (92), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 27/85 (31%), Positives = 35/85 (41%), Gaps = 7/85 (8%)
Query: 11 EQTLQPGPA---VSLKCIASGNPTPDIGWTLDGFELPTNNRFVIGQFVSGHGDVISHVNI 67
E+ L PA V +C A GNP P W +G E +R + + H +I
Sbjct: 24 EKRLHAVPAANTVKFRCPAGGNPXPTXRWLKNGKEFKQEHRIGGYKVRNQHWSLIX---- 79
Query: 68 SHVTVEDGGEYACVAENRAGTCEIT 92
V D G Y CV EN G+ T
Sbjct: 80 ESVVPSDKGNYTCVVENEYGSINHT 104
Score = 29.3 bits (64), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 18/66 (27%), Positives = 23/66 (34%)
Query: 220 GDPPLTIRWLKDGKPLSPRFPXXXXXXXXXXXXXXXXXXXAAHSGEYTCVASNTAAQARY 279
G+P T RWLK+GK + G YTCV N +
Sbjct: 44 GNPXPTXRWLKNGKEFKQEHRIGGYKVRNQHWSLIXESVVPSDKGNYTCVVENEYGSINH 103
Query: 280 SSKLQV 285
+ L V
Sbjct: 104 TYHLDV 109
>pdb|2Y25|A Chain A, Crystal Structure Of The Myomesin Domains My11-My13
pdb|2Y25|B Chain B, Crystal Structure Of The Myomesin Domains My11-My13
pdb|2Y25|C Chain C, Crystal Structure Of The Myomesin Domains My11-My13
pdb|2Y25|D Chain D, Crystal Structure Of The Myomesin Domains My11-My13
Length = 317
Score = 40.0 bits (92), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 21/76 (27%), Positives = 42/76 (55%), Gaps = 4/76 (5%)
Query: 13 TLQPGPAVSLKCIASGNPTPDIGWTLDGFELPTNNRFVIGQFVSGHGDVISHVNISHVTV 72
T+Q G A++L C G+P P++ W + L +++ + +F +G ++ I+ V+
Sbjct: 233 TIQEGKALNLTCNVWGDPPPEVSWLKNEKALASDDHCNL-KFEAGR---TAYFTINGVST 288
Query: 73 EDGGEYACVAENRAGT 88
D G+Y V +N+ G+
Sbjct: 289 ADSGKYGLVVKNKYGS 304
Score = 37.7 bits (86), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 33/106 (31%), Positives = 46/106 (43%), Gaps = 12/106 (11%)
Query: 92 TPYDSGPYLIAWFKDGRQIPGRTSSTSLVINPVGREDRGIYQCIARRSDGDVAQGSAELQ 151
TP D G Y++ F DG+ +T S G+ Y R +A+ +
Sbjct: 172 TPNDKGKYVMELF-DGKTGHQKTVDLS------GQAYDEAYAEFQRLKQAAIAEKNRARV 224
Query: 152 LGGLPYVRLIPKVTAIDGEGLSIKCPVAGYPIEEVHWEKVPPKIES 197
LGGLP V VT +G+ L++ C V G P EV W K + S
Sbjct: 225 LGGLPDV-----VTIQEGKALNLTCNVWGDPPPEVSWLKNEKALAS 265
>pdb|1DJS|A Chain A, Ligand-binding Portion Of Fibroblast Growth Factor
Receptor 2 In Complex With Fgf1
Length = 216
Score = 39.7 bits (91), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 27/85 (31%), Positives = 35/85 (41%), Gaps = 7/85 (8%)
Query: 11 EQTLQPGPA---VSLKCIASGNPTPDIGWTLDGFELPTNNRFVIGQFVSGHGDVISHVNI 67
E+ L PA V +C A GNP P W +G E +R + + H +I
Sbjct: 17 EKRLHAVPAANTVKFRCPAGGNPXPTXRWLKNGKEFKQEHRIGGYKVRNQHWSLIX---- 72
Query: 68 SHVTVEDGGEYACVAENRAGTCEIT 92
V D G Y CV EN G+ T
Sbjct: 73 ESVVPSDKGNYTCVVENEYGSINHT 97
Score = 30.0 bits (66), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 18/66 (27%), Positives = 23/66 (34%)
Query: 220 GDPPLTIRWLKDGKPLSPRFPXXXXXXXXXXXXXXXXXXXAAHSGEYTCVASNTAAQARY 279
G+P T RWLK+GK + G YTCV N +
Sbjct: 37 GNPXPTXRWLKNGKEFKQEHRIGGYKVRNQHWSLIXESVVPSDKGNYTCVVENEYGSINH 96
Query: 280 SSKLQV 285
+ L V
Sbjct: 97 TYHLDV 102
Score = 28.1 bits (61), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 12/21 (57%), Positives = 14/21 (66%)
Query: 67 ISHVTVEDGGEYACVAENRAG 87
I +VT ED GEY C+A N G
Sbjct: 183 IRNVTFEDAGEYTCLAGNSIG 203
>pdb|2YD3|A Chain A, Crystal Structure Of The N-Terminal Ig1-2 Module Of Human
Receptor Protein Tyrosine Phosphatase Sigma
Length = 202
Score = 39.7 bits (91), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 25/68 (36%), Positives = 33/68 (48%), Gaps = 7/68 (10%)
Query: 21 SLKCIASGNPTPDIGWTLDGFEL-PTNNRFVIGQFVSGHGDVISHVNISHVTVEDGGEYA 79
++ C ASGNP P+I W D + P+ + I Q SG + I D G+Y
Sbjct: 127 TMLCAASGNPDPEITWFKDFLPVDPSASNGRIKQLRSG------ALQIESSEETDQGKYE 180
Query: 80 CVAENRAG 87
CVA N AG
Sbjct: 181 CVATNSAG 188
Score = 38.9 bits (89), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 48/188 (25%), Positives = 65/188 (34%), Gaps = 53/188 (28%)
Query: 2 PPILTYSFIEQTLQPGPAVSLKCIASGNPTPDIGWTLDGFELPTNNRFVIGQFVSGHGDV 61
PP +Q G S C A+G+P P + W G ++ + RF +F G V
Sbjct: 6 PPRFIKEPKDQIGVSGGVASFVCQATGDPKPRVTWNKKGKKV-NSQRFETIEFDESAGAV 64
Query: 62 ISHVNISHVTVEDGGEYACVAENRAGTCEITPY------------------DSGPYL--- 100
+ + T D Y CVA+N G EIT + D GP L
Sbjct: 65 LRIQPLR--TPRDENVYECVAQNSVG--EITVHAKLTVLREDQLPSGFPNIDMGPQLKVV 120
Query: 101 -------------------IAWFKDGRQIPGRTS--------STSLVINPVGREDRGIYQ 133
I WFKD + S S +L I D+G Y+
Sbjct: 121 ERTRTATMLCAASGNPDPEITWFKDFLPVDPSASNGRIKQLRSGALQIESSEETDQGKYE 180
Query: 134 CIARRSDG 141
C+A S G
Sbjct: 181 CVATNSAG 188
Score = 32.3 bits (72), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 41/197 (20%), Positives = 65/197 (32%), Gaps = 57/197 (28%)
Query: 101 IAWFKDGRQIPGRTSST---------SLVINPVGR-EDRGIYQCIARRSDGDVAQGSA-- 148
+ W K G+++ + T L I P+ D +Y+C+A+ S G++ +
Sbjct: 38 VTWNKKGKKVNSQRFETIEFDESAGAVLRIQPLRTPRDENVYECVAQNSVGEITVHAKLT 97
Query: 149 ---ELQL-GGLPYVRLIPKVTAIDGEGLSIKCPVAGYPIEEVHWEKVPPKIESFAFPFDG 204
E QL G P + + P++ +
Sbjct: 98 VLREDQLPSGFPNIDMGPQLKVV------------------------------------- 120
Query: 205 LPEGARTRVICGVTHGDPPLTIRWLKDGKPLSPRFPXXXXXXXXXXXXXXXXXXXAAHSG 264
E RT + G+P I W KD P+ P G
Sbjct: 121 --ERTRTATMLCAASGNPDPEITWFKDFLPVDPS-ASNGRIKQLRSGALQIESSEETDQG 177
Query: 265 EYTCVASNTAAQARYSS 281
+Y CVA+N+A RYSS
Sbjct: 178 KYECVATNSAG-VRYSS 193
>pdb|2YD2|A Chain A, Crystal Structure Of The N-Terminal Ig1-2 Module Of Human
Receptor Protein Tyrosine Phosphatase Sigma
Length = 214
Score = 39.7 bits (91), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 25/68 (36%), Positives = 33/68 (48%), Gaps = 7/68 (10%)
Query: 21 SLKCIASGNPTPDIGWTLDGFEL-PTNNRFVIGQFVSGHGDVISHVNISHVTVEDGGEYA 79
++ C ASGNP P+I W D + P+ + I Q SG + I D G+Y
Sbjct: 127 TMLCAASGNPDPEITWFKDFLPVDPSASNGRIKQLRSG------ALQIESSEETDQGKYE 180
Query: 80 CVAENRAG 87
CVA N AG
Sbjct: 181 CVATNSAG 188
Score = 38.9 bits (89), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 49/188 (26%), Positives = 66/188 (35%), Gaps = 53/188 (28%)
Query: 2 PPILTYSFIEQTLQPGPAVSLKCIASGNPTPDIGWTLDGFELPTNNRFVIGQFVSGHGDV 61
PP +Q G S C A+G+P P + W G ++ + RF +F G V
Sbjct: 6 PPRFIKEPKDQIGVSGGVASFVCQATGDPKPRVTWNKKGKKV-NSQRFETIEFDESAGAV 64
Query: 62 ISHVNISHVTVEDGGEYACVAENRAGTCEITPY------------------DSGPYL--- 100
+ + T D Y CVA+N G EIT + D GP L
Sbjct: 65 LRIQPLR--TPRDENVYECVAQNSVG--EITVHAKLTVLREDQLPSGFPNIDMGPQLKVV 120
Query: 101 -------------------IAWFKDGRQIP-----GRTS---STSLVINPVGREDRGIYQ 133
I WFKD + GR S +L I D+G Y+
Sbjct: 121 ERTRTATMLCAASGNPDPEITWFKDFLPVDPSASNGRIKQLRSGALQIESSEETDQGKYE 180
Query: 134 CIARRSDG 141
C+A S G
Sbjct: 181 CVATNSAG 188
Score = 32.0 bits (71), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 25/107 (23%), Positives = 48/107 (44%), Gaps = 17/107 (15%)
Query: 101 IAWFKDGRQIPGRTSST---------SLVINPVGR-EDRGIYQCIARRSDGDVAQGSA-- 148
+ W K G+++ + T L I P+ D +Y+C+A+ S G++ +
Sbjct: 38 VTWNKKGKKVNSQRFETIEFDESAGAVLRIQPLRTPRDENVYECVAQNSVGEITVHAKLT 97
Query: 149 ---ELQL-GGLPYVRLIPKVTAID-GEGLSIKCPVAGYPIEEVHWEK 190
E QL G P + + P++ ++ ++ C +G P E+ W K
Sbjct: 98 VLREDQLPSGFPNIDMGPQLKVVERTRTATMLCAASGNPDPEITWFK 144
>pdb|1EVT|C Chain C, Crystal Structure Of Fgf1 In Complex With The
Extracellular Ligand Binding Domain Of Fgf Receptor 1
(Fgfr1)
pdb|1EVT|D Chain D, Crystal Structure Of Fgf1 In Complex With The
Extracellular Ligand Binding Domain Of Fgf Receptor 1
(Fgfr1)
Length = 225
Score = 38.9 bits (89), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 26/86 (30%), Positives = 39/86 (45%), Gaps = 7/86 (8%)
Query: 10 IEQTLQPGPA---VSLKCIASGNPTPDIGWTLDGFELPTNNRFVIGQFVSGHGDVISHVN 66
+E+ L PA V KC +SG P P + W +G E ++R IG + + +
Sbjct: 21 MEKKLHAVPAAKTVKFKCPSSGTPNPTLRWLKNGKEFKPDHR--IGGYKVRYA--TWSII 76
Query: 67 ISHVTVEDGGEYACVAENRAGTCEIT 92
+ V D G Y C+ EN G+ T
Sbjct: 77 MDSVVPSDKGNYTCIVENEYGSINHT 102
Score = 33.1 bits (74), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 24/84 (28%), Positives = 37/84 (44%), Gaps = 8/84 (9%)
Query: 12 QTLQPGPAVSLKCIASGNPTPDIGW----TLDGFEL-PTNNRFVIGQFVSGHGDVISHVN 66
+T+ G V C +P P I W ++G ++ P N +V +G +
Sbjct: 125 KTVALGSNVEFMCKVYSDPQPHIQWLKHIEVNGSKIGPDNLPYVQILKTAGVNTTDKEME 184
Query: 67 ISH---VTVEDGGEYACVAENRAG 87
+ H V+ ED GEY C+A N G
Sbjct: 185 VLHLRNVSFEDAGEYTCLAGNSIG 208
Score = 32.7 bits (73), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 20/90 (22%), Positives = 30/90 (33%), Gaps = 1/90 (1%)
Query: 196 ESFAFPFDGLPEGARTRVICGVTHGDPPLTIRWLKDGKPLSPRFPXXXXXXXXXXXXXXX 255
E +P + C + G P T+RWLK+GK P
Sbjct: 19 EKMEKKLHAVPAAKTVKFKCP-SSGTPNPTLRWLKNGKEFKPDHRIGGYKVRYATWSIIM 77
Query: 256 XXXXAAHSGEYTCVASNTAAQARYSSKLQV 285
+ G YTC+ N ++ +L V
Sbjct: 78 DSVVPSDKGNYTCIVENEYGSINHTYQLDV 107
Score = 29.6 bits (65), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 42/204 (20%), Positives = 71/204 (34%), Gaps = 52/204 (25%)
Query: 101 IAWFKDGRQIPG---------RTSSTSLVINPVGREDRGIYQCIARRSDG--------DV 143
+ W K+G++ R ++ S++++ V D+G Y CI G DV
Sbjct: 48 LRWLKNGKEFKPDHRIGGYKVRYATWSIIMDSVVPSDKGNYTCIVENEYGSINHTYQLDV 107
Query: 144 AQGSAE--LQLGGLPYVRLIPKVTAIDGEGLSIKCPVAGYPIEEVHWEKVPPKIESFAFP 201
+ S + GLP + T G + C V P + W K ++
Sbjct: 108 VERSPHRPILQAGLPANK-----TVALGSNVEFMCKVYSDPQPHIQWLK-HIEVNGSKIG 161
Query: 202 FDGLPEGARTRVICGVTHGDPPLTIRWLKDGKPLSPRFPXXXXXXXXXXXXXXXXXXXAA 261
D LP + GV D + + L++
Sbjct: 162 PDNLPY-VQILKTAGVNTTDKEMEVLHLRN--------------------------VSFE 194
Query: 262 HSGEYTCVASNTAAQARYSSKLQV 285
+GEYTC+A N+ + +S+ L V
Sbjct: 195 DAGEYTCLAGNSIGLSHHSAWLTV 218
>pdb|2LQR|A Chain A, Nmr Structure Of Ig3 Domain Of Palladin
Length = 108
Score = 38.9 bits (89), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 24/93 (25%), Positives = 40/93 (43%), Gaps = 5/93 (5%)
Query: 1 TPPILTYSFIEQTLQPGPAVSLKCIASGNPTPDIGWTLDGFEL-PTNNRFVIGQFVSGHG 59
T P + G V+ C +GNP P I W DG ++ P ++ + I + + G
Sbjct: 6 TAPFFEMKLKHYKIFEGMPVTFTCRVAGNPKPKIYWFKDGKQISPKSDHYTIQRDLDG-- 63
Query: 60 DVISHVNISHVTVEDGGEYACVAENRAGTCEIT 92
++ + T++D G Y +A N G T
Sbjct: 64 --TCSLHTTASTLDDDGNYTIMAANPQGRVSCT 94
Score = 29.6 bits (65), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 15/37 (40%), Positives = 20/37 (54%), Gaps = 5/37 (13%)
Query: 202 FDGLPEGARTRVICGVTHGDPPLTIRWLKDGKPLSPR 238
F+G+P RV G+P I W KDGK +SP+
Sbjct: 20 FEGMPVTFTCRVA-----GNPKPKIYWFKDGKQISPK 51
>pdb|1YA5|A Chain A, Crystal Structure Of The Titin Domains Z1z2 In Complex
With Telethonin
pdb|1YA5|B Chain B, Crystal Structure Of The Titin Domains Z1z2 In Complex
With Telethonin
pdb|2F8V|A Chain A, Structure Of Full Length Telethonin In Complex With The
N-Terminus Of Titin
pdb|2F8V|B Chain B, Structure Of Full Length Telethonin In Complex With The
N-Terminus Of Titin
pdb|2F8V|C Chain C, Structure Of Full Length Telethonin In Complex With The
N-Terminus Of Titin
pdb|2F8V|D Chain D, Structure Of Full Length Telethonin In Complex With The
N-Terminus Of Titin
Length = 201
Score = 38.9 bits (89), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 27/86 (31%), Positives = 40/86 (46%), Gaps = 5/86 (5%)
Query: 2 PPILTYSFIEQTLQPGPAVSLKCIASGNPTPDIGWTLDGFELPTNNRFVIGQFVSGHGDV 61
PP T++ G V L+ +G PTP + + DG E+ ++ F I Q GD+
Sbjct: 103 PPNFVQRLQSMTVRQGSQVRLQVRVTGIPTPVVKFYRDGAEIQSSLDFQISQ----EGDL 158
Query: 62 ISHVNISHVTVEDGGEYACVAENRAG 87
S + I+ ED G Y+ A N G
Sbjct: 159 YSLL-IAEAYPEDSGTYSVNATNSVG 183
>pdb|2A38|A Chain A, Crystal Structure Of The N-Terminus Of Titin
pdb|2A38|B Chain B, Crystal Structure Of The N-Terminus Of Titin
pdb|2A38|C Chain C, Crystal Structure Of The N-Terminus Of Titin
Length = 194
Score = 38.9 bits (89), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 27/86 (31%), Positives = 40/86 (46%), Gaps = 5/86 (5%)
Query: 2 PPILTYSFIEQTLQPGPAVSLKCIASGNPTPDIGWTLDGFELPTNNRFVIGQFVSGHGDV 61
PP T++ G V L+ +G PTP + + DG E+ ++ F I Q GD+
Sbjct: 103 PPNFVQRLQSMTVRQGSQVRLQVRVTGIPTPVVKFYRDGAEIQSSLDFQISQ----EGDL 158
Query: 62 ISHVNISHVTVEDGGEYACVAENRAG 87
S + I+ ED G Y+ A N G
Sbjct: 159 YSLL-IAEAYPEDSGTYSVNATNSVG 183
>pdb|3OJV|C Chain C, Crystal Structure Of Fgf1 Complexed With The Ectodomain Of
Fgfr1c Exhibiting An Ordered Ligand
Specificity-Determining Betac'-Betae Loop
pdb|3OJV|D Chain D, Crystal Structure Of Fgf1 Complexed With The Ectodomain Of
Fgfr1c Exhibiting An Ordered Ligand
Specificity-Determining Betac'-Betae Loop
Length = 226
Score = 38.9 bits (89), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 26/86 (30%), Positives = 39/86 (45%), Gaps = 7/86 (8%)
Query: 10 IEQTLQPGPA---VSLKCIASGNPTPDIGWTLDGFELPTNNRFVIGQFVSGHGDVISHVN 66
+E+ L PA V KC +SG P P + W +G E ++R IG + + +
Sbjct: 22 MEKKLHAVPAAKTVKFKCPSSGTPQPTLRWLKNGKEFKPDHR--IGGYKVRYA--TWSII 77
Query: 67 ISHVTVEDGGEYACVAENRAGTCEIT 92
+ V D G Y C+ EN G+ T
Sbjct: 78 MDSVVPSDKGNYTCIVENEYGSINHT 103
Score = 33.1 bits (74), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 24/84 (28%), Positives = 37/84 (44%), Gaps = 8/84 (9%)
Query: 12 QTLQPGPAVSLKCIASGNPTPDIGW----TLDGFEL-PTNNRFVIGQFVSGHGDVISHVN 66
+T+ G V C +P P I W ++G ++ P N +V +G +
Sbjct: 126 KTVALGSNVEFMCKVYSDPQPHIQWLKHIEVNGSKIGPDNLPYVQILKTAGVNTTDKEME 185
Query: 67 ISH---VTVEDGGEYACVAENRAG 87
+ H V+ ED GEY C+A N G
Sbjct: 186 VLHLRNVSFEDAGEYTCLAGNSIG 209
Score = 32.7 bits (73), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 20/90 (22%), Positives = 30/90 (33%), Gaps = 1/90 (1%)
Query: 196 ESFAFPFDGLPEGARTRVICGVTHGDPPLTIRWLKDGKPLSPRFPXXXXXXXXXXXXXXX 255
E +P + C + G P T+RWLK+GK P
Sbjct: 20 EKMEKKLHAVPAAKTVKFKCP-SSGTPQPTLRWLKNGKEFKPDHRIGGYKVRYATWSIIM 78
Query: 256 XXXXAAHSGEYTCVASNTAAQARYSSKLQV 285
+ G YTC+ N ++ +L V
Sbjct: 79 DSVVPSDKGNYTCIVENEYGSINHTYQLDV 108
Score = 29.6 bits (65), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 42/204 (20%), Positives = 71/204 (34%), Gaps = 52/204 (25%)
Query: 101 IAWFKDGRQIPG---------RTSSTSLVINPVGREDRGIYQCIARRSDG--------DV 143
+ W K+G++ R ++ S++++ V D+G Y CI G DV
Sbjct: 49 LRWLKNGKEFKPDHRIGGYKVRYATWSIIMDSVVPSDKGNYTCIVENEYGSINHTYQLDV 108
Query: 144 AQGSAE--LQLGGLPYVRLIPKVTAIDGEGLSIKCPVAGYPIEEVHWEKVPPKIESFAFP 201
+ S + GLP + T G + C V P + W K ++
Sbjct: 109 VERSPHRPILQAGLPANK-----TVALGSNVEFMCKVYSDPQPHIQWLK-HIEVNGSKIG 162
Query: 202 FDGLPEGARTRVICGVTHGDPPLTIRWLKDGKPLSPRFPXXXXXXXXXXXXXXXXXXXAA 261
D LP + GV D + + L++
Sbjct: 163 PDNLPY-VQILKTAGVNTTDKEMEVLHLRN--------------------------VSFE 195
Query: 262 HSGEYTCVASNTAAQARYSSKLQV 285
+GEYTC+A N+ + +S+ L V
Sbjct: 196 DAGEYTCLAGNSIGLSHHSAWLTV 219
>pdb|1CVS|C Chain C, Crystal Structure Of A Dimeric Fgf2-Fgfr1 Complex
pdb|1CVS|D Chain D, Crystal Structure Of A Dimeric Fgf2-Fgfr1 Complex
pdb|1FQ9|C Chain C, Crystal Structure Of A Ternary Fgf2-Fgfr1-Heparin Complex
pdb|1FQ9|D Chain D, Crystal Structure Of A Ternary Fgf2-Fgfr1-Heparin Complex
Length = 225
Score = 38.9 bits (89), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 26/86 (30%), Positives = 39/86 (45%), Gaps = 7/86 (8%)
Query: 10 IEQTLQPGPA---VSLKCIASGNPTPDIGWTLDGFELPTNNRFVIGQFVSGHGDVISHVN 66
+E+ L PA V KC +SG P P + W +G E ++R IG + + +
Sbjct: 21 MEKKLHAVPAAKTVKFKCPSSGTPQPTLRWLKNGKEFKPDHR--IGGYKVRYA--TWSII 76
Query: 67 ISHVTVEDGGEYACVAENRAGTCEIT 92
+ V D G Y C+ EN G+ T
Sbjct: 77 MDSVVPSDKGNYTCIVENEYGSINHT 102
Score = 33.1 bits (74), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 24/84 (28%), Positives = 37/84 (44%), Gaps = 8/84 (9%)
Query: 12 QTLQPGPAVSLKCIASGNPTPDIGW----TLDGFEL-PTNNRFVIGQFVSGHGDVISHVN 66
+T+ G V C +P P I W ++G ++ P N +V +G +
Sbjct: 125 KTVALGSNVEFMCKVYSDPQPHIQWLKHIEVNGSKIGPDNLPYVQILKTAGVNTTDKEME 184
Query: 67 ISH---VTVEDGGEYACVAENRAG 87
+ H V+ ED GEY C+A N G
Sbjct: 185 VLHLRNVSFEDAGEYTCLAGNSIG 208
Score = 32.7 bits (73), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 20/90 (22%), Positives = 30/90 (33%), Gaps = 1/90 (1%)
Query: 196 ESFAFPFDGLPEGARTRVICGVTHGDPPLTIRWLKDGKPLSPRFPXXXXXXXXXXXXXXX 255
E +P + C + G P T+RWLK+GK P
Sbjct: 19 EKMEKKLHAVPAAKTVKFKCP-SSGTPQPTLRWLKNGKEFKPDHRIGGYKVRYATWSIIM 77
Query: 256 XXXXAAHSGEYTCVASNTAAQARYSSKLQV 285
+ G YTC+ N ++ +L V
Sbjct: 78 DSVVPSDKGNYTCIVENEYGSINHTYQLDV 107
Score = 29.6 bits (65), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 42/204 (20%), Positives = 71/204 (34%), Gaps = 52/204 (25%)
Query: 101 IAWFKDGRQIPG---------RTSSTSLVINPVGREDRGIYQCIARRSDG--------DV 143
+ W K+G++ R ++ S++++ V D+G Y CI G DV
Sbjct: 48 LRWLKNGKEFKPDHRIGGYKVRYATWSIIMDSVVPSDKGNYTCIVENEYGSINHTYQLDV 107
Query: 144 AQGSAE--LQLGGLPYVRLIPKVTAIDGEGLSIKCPVAGYPIEEVHWEKVPPKIESFAFP 201
+ S + GLP + T G + C V P + W K ++
Sbjct: 108 VERSPHRPILQAGLPANK-----TVALGSNVEFMCKVYSDPQPHIQWLK-HIEVNGSKIG 161
Query: 202 FDGLPEGARTRVICGVTHGDPPLTIRWLKDGKPLSPRFPXXXXXXXXXXXXXXXXXXXAA 261
D LP + GV D + + L++
Sbjct: 162 PDNLPY-VQILKTAGVNTTDKEMEVLHLRN--------------------------VSFE 194
Query: 262 HSGEYTCVASNTAAQARYSSKLQV 285
+GEYTC+A N+ + +S+ L V
Sbjct: 195 DAGEYTCLAGNSIGLSHHSAWLTV 218
>pdb|2RJM|A Chain A, 3ig Structure Of Titin Domains I67-I69 E-To-A Mutated
Variant
Length = 284
Score = 38.5 bits (88), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 54/237 (22%), Positives = 84/237 (35%), Gaps = 47/237 (19%)
Query: 2 PPILTYSFIEQTLQPGPAVSLKCIASGNPTPDIGWTLDGFELPTNNRFVIGQFVSGHGDV 61
PP + L G + + KC +G I W D E+ G + +
Sbjct: 5 PPFFDLKPVSVDLALGESGTFKCHVTGTAPIKITWAKDNREIRPG-----GNYKMTLVEN 59
Query: 62 ISHVNISHVTVEDGGEYACVAENRAG--TC-------------------------EITPY 94
+ + + VT D G+Y C A N AG +C E T Y
Sbjct: 60 TATLTVLKVTKGDAGQYTCYASNVAGKDSCSAQLGVQAPPRFIKKLEPSRIVKQDEHTRY 119
Query: 95 D-----SGPYLIAWFKDGRQIPGRT--------SSTSLVINPVGREDRGIYQCIARRSDG 141
+ S + W+KD +I + S L + + ED G Y C A +
Sbjct: 120 ECKIGGSPEIKVLWYKDETEIQESSKFRMSFVESVAVLEMYNLSVEDSGDYTCEAH-NAA 178
Query: 142 DVAQGSAELQLGGLPYVRLIPK-VTAIDGEGLSIKCPVAGYPIEEVHWEKVPPKIES 197
A S L++ P R P V + G + ++C + G P +V W K ++ S
Sbjct: 179 GSASSSTSLKVKEPPVFRKKPHPVETLKGADVHLECELQGTPPFQVSWHKDKRELRS 235
Score = 37.4 bits (85), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 23/77 (29%), Positives = 37/77 (48%), Gaps = 6/77 (7%)
Query: 12 QTLQPGPAVSLKCIASGNPTPDIGWTLDGFELPTNNRFVIGQFVSGHGDVISHVNISHVT 71
+TL+ G V L+C G P + W D EL + ++ I + ++ ++I +V
Sbjct: 203 ETLK-GADVHLECELQGTPPFQVSWHKDKRELRSGKKYKIMS-----ENFLTSIHILNVD 256
Query: 72 VEDGGEYACVAENRAGT 88
D GEY C A N G+
Sbjct: 257 SADIGEYQCKASNDVGS 273
Score = 37.0 bits (84), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 40/162 (24%), Positives = 64/162 (39%), Gaps = 52/162 (32%)
Query: 23 KCIASGNPTPDIGWTLDGFELPTNNRFVIGQFVSGHGDVISHVNISHVTVEDGGEYACVA 82
+C G+P + W D E+ +++F + FV + ++ + + +++VED G+Y C A
Sbjct: 120 ECKIGGSPEIKVLWYKDETEIQESSKFRMS-FV----ESVAVLEMYNLSVEDSGDYTCEA 174
Query: 83 ENRAGT---------------------------------CEI--TPYDSGPYLIAWFKDG 107
N AG+ CE+ TP P+ ++W KD
Sbjct: 175 HNAAGSASSSTSLKVKEPPVFRKKPHPVETLKGADVHLECELQGTP----PFQVSWHKDK 230
Query: 108 RQ--------IPGRTSSTSLVINPVGREDRGIYQCIARRSDG 141
R+ I TS+ I V D G YQC A G
Sbjct: 231 RELRSGKKYKIMSENFLTSIHILNVDSADIGEYQCKASNDVG 272
Score = 31.2 bits (69), Expect = 0.66, Method: Compositional matrix adjust.
Identities = 21/72 (29%), Positives = 30/72 (41%), Gaps = 2/72 (2%)
Query: 215 CGVTHGDPPLTIRWLKDGKPLSPRFPXXXXXXXXXXXXXXXXXXXAAHSGEYTCVASNTA 274
C VT G P+ I W KD + + P +G+YTC ASN A
Sbjct: 27 CHVT-GTAPIKITWAKDNREIRPG-GNYKMTLVENTATLTVLKVTKGDAGQYTCYASNVA 84
Query: 275 AQARYSSKLQVK 286
+ S++L V+
Sbjct: 85 GKDSCSAQLGVQ 96
>pdb|2RIK|A Chain A, I-Band Fragment I67-I69 From Titin
Length = 284
Score = 38.5 bits (88), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 54/237 (22%), Positives = 84/237 (35%), Gaps = 47/237 (19%)
Query: 2 PPILTYSFIEQTLQPGPAVSLKCIASGNPTPDIGWTLDGFELPTNNRFVIGQFVSGHGDV 61
PP + L G + + KC +G I W D E+ G + +
Sbjct: 5 PPFFDLKPVSVDLALGESGTFKCHVTGTAPIKITWAKDNREIRPG-----GNYKMTLVEN 59
Query: 62 ISHVNISHVTVEDGGEYACVAENRAG--TC-------------------------EITPY 94
+ + + VT D G+Y C A N AG +C E T Y
Sbjct: 60 TATLTVLKVTKGDAGQYTCYASNVAGKDSCSAQLGVQEPPRFIKKLEPSRIVKQDEHTRY 119
Query: 95 D-----SGPYLIAWFKDGRQIPGRT--------SSTSLVINPVGREDRGIYQCIARRSDG 141
+ S + W+KD +I + S L + + ED G Y C A +
Sbjct: 120 ECKIGGSPEIKVLWYKDETEIQESSKFRMSFVESVAVLEMYNLSVEDSGDYTCEAH-NAA 178
Query: 142 DVAQGSAELQLGGLPYVRLIPK-VTAIDGEGLSIKCPVAGYPIEEVHWEKVPPKIES 197
A S L++ P R P V + G + ++C + G P +V W K ++ S
Sbjct: 179 GSASSSTSLKVKEPPVFRKKPHPVETLKGADVHLECELQGTPPFQVSWHKDKRELRS 235
Score = 37.4 bits (85), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 23/77 (29%), Positives = 37/77 (48%), Gaps = 6/77 (7%)
Query: 12 QTLQPGPAVSLKCIASGNPTPDIGWTLDGFELPTNNRFVIGQFVSGHGDVISHVNISHVT 71
+TL+ G V L+C G P + W D EL + ++ I + ++ ++I +V
Sbjct: 203 ETLK-GADVHLECELQGTPPFQVSWHKDKRELRSGKKYKIMS-----ENFLTSIHILNVD 256
Query: 72 VEDGGEYACVAENRAGT 88
D GEY C A N G+
Sbjct: 257 SADIGEYQCKASNDVGS 273
Score = 37.0 bits (84), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 40/162 (24%), Positives = 64/162 (39%), Gaps = 52/162 (32%)
Query: 23 KCIASGNPTPDIGWTLDGFELPTNNRFVIGQFVSGHGDVISHVNISHVTVEDGGEYACVA 82
+C G+P + W D E+ +++F + FV + ++ + + +++VED G+Y C A
Sbjct: 120 ECKIGGSPEIKVLWYKDETEIQESSKFRMS-FV----ESVAVLEMYNLSVEDSGDYTCEA 174
Query: 83 ENRAGT---------------------------------CEI--TPYDSGPYLIAWFKDG 107
N AG+ CE+ TP P+ ++W KD
Sbjct: 175 HNAAGSASSSTSLKVKEPPVFRKKPHPVETLKGADVHLECELQGTP----PFQVSWHKDK 230
Query: 108 RQ--------IPGRTSSTSLVINPVGREDRGIYQCIARRSDG 141
R+ I TS+ I V D G YQC A G
Sbjct: 231 RELRSGKKYKIMSENFLTSIHILNVDSADIGEYQCKASNDVG 272
Score = 31.2 bits (69), Expect = 0.66, Method: Compositional matrix adjust.
Identities = 21/72 (29%), Positives = 30/72 (41%), Gaps = 2/72 (2%)
Query: 215 CGVTHGDPPLTIRWLKDGKPLSPRFPXXXXXXXXXXXXXXXXXXXAAHSGEYTCVASNTA 274
C VT G P+ I W KD + + P +G+YTC ASN A
Sbjct: 27 CHVT-GTAPIKITWAKDNREIRPG-GNYKMTLVENTATLTVLKVTKGDAGQYTCYASNVA 84
Query: 275 AQARYSSKLQVK 286
+ S++L V+
Sbjct: 85 GKDSCSAQLGVQ 96
>pdb|3RJD|A Chain A, Crystal Structure Of Fc Ri And Its Implication To High
Affinity Immunoglobulin G Binding
Length = 262
Score = 38.5 bits (88), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 18/52 (34%), Positives = 29/52 (55%)
Query: 101 IAWFKDGRQIPGRTSSTSLVINPVGREDRGIYQCIARRSDGDVAQGSAELQL 152
+++ + + GR +S+ I RED G+Y C A DG+V + S EL+L
Sbjct: 207 FSFYMGSKTLRGRNTSSEYQILTARREDSGLYWCEAATEDGNVLKRSPELEL 258
>pdb|2R15|A Chain A, Crystal Structure Of The Myomesin Domains 12 And 13
pdb|2R15|B Chain B, Crystal Structure Of The Myomesin Domains 12 And 13
Length = 212
Score = 38.1 bits (87), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 21/76 (27%), Positives = 40/76 (52%), Gaps = 4/76 (5%)
Query: 13 TLQPGPAVSLKCIASGNPTPDIGWTLDGFELPTNNRFVIGQFVSGHGDVISHVNISHVTV 72
T+Q G A++L C G+P P++ W + L + + +F +G ++ I+ V+
Sbjct: 128 TIQEGKALNLTCNVWGDPPPEVSWLKNEKALAQTDHCNL-KFEAGR---TAYFTINGVST 183
Query: 73 EDGGEYACVAENRAGT 88
D G+Y V +N+ G+
Sbjct: 184 ADSGKYGLVVKNKYGS 199
Score = 38.1 bits (87), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 41/137 (29%), Positives = 58/137 (42%), Gaps = 21/137 (15%)
Query: 90 EITPYDSGPYLIAWFKDGRQIPGRTSSTSLVINPVGREDRGIYQCIARRSDGDVAQGSAE 149
E TP D G Y++ F DG+ +T ++ G+ Y R +A+ +
Sbjct: 65 EPTPNDKGKYVMELF-DGKTGHQKT------VDLSGQAYDEAYAEFQRLKQAAIAEKNRA 117
Query: 150 LQLGGLPYVRLIPKVTAIDGEGLSIKCPVAGYPIEEVHW---EKVPPKIESFAFPFDGLP 206
LGGLP V VT +G+ L++ C V G P EV W EK + + F
Sbjct: 118 RVLGGLPDV-----VTIQEGKALNLTCNVWGDPPPEVSWLKNEKALAQTDHCNLKF---- 168
Query: 207 EGARTR--VICGVTHGD 221
E RT I GV+ D
Sbjct: 169 EAGRTAYFTINGVSTAD 185
>pdb|1BIH|A Chain A, Crystal Structure Of The Insect Immune Protein Hemolin: A
New Domain Arrangement With Implications For Homophilic
Adhesion
pdb|1BIH|B Chain B, Crystal Structure Of The Insect Immune Protein Hemolin: A
New Domain Arrangement With Implications For Homophilic
Adhesion
Length = 395
Score = 38.1 bits (87), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 26/98 (26%), Positives = 40/98 (40%), Gaps = 12/98 (12%)
Query: 103 WFKDGRQIPG----------RTSSTSLVINPVGREDRGIYQCIARRSDGDVAQGSAELQL 152
+FK+G+ + G RTS L+ ED G+Y C G + S +L +
Sbjct: 246 YFKNGKDVNGNPEDRITRHNRTSGKRLLFKTTLPEDEGVYTCEVDNGVGKPQKHSLKLTV 305
Query: 153 GGLPYVRLIPK--VTAIDGEGLSIKCPVAGYPIEEVHW 188
P P+ + G+ ++I C V G P V W
Sbjct: 306 VSAPKYEQKPEKVIVVKQGQDVTIPCKVTGLPAPNVVW 343
>pdb|2J8H|A Chain A, Structure Of The Immunoglobulin Tandem Repeat A168-A169 Of
Titin
pdb|2J8O|A Chain A, Structure Of The Immunoglobulin Tandem Repeat Of Titin
A168- A169
pdb|2J8O|B Chain B, Structure Of The Immunoglobulin Tandem Repeat Of Titin
A168- A169
Length = 197
Score = 38.1 bits (87), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 30/108 (27%), Positives = 51/108 (47%), Gaps = 19/108 (17%)
Query: 100 LIAWFKDGRQIPG----------RTSSTSLVINPVGREDRGIYQCIARRSDGDVAQGSAE 149
++ W++ G++I + L+I V +D +YQ A G V+ G+A
Sbjct: 35 IVKWYRQGKEIIADGLKYRIQEFKGGYHQLIIASVTDDDATVYQVRATNQGGSVS-GTAS 93
Query: 150 LQLGGLPYVRLIPK-------VTAIDGEGLSIKCPVAGYPIEEVHWEK 190
L++ +P +PK V A+ GE +SIK P +G P + W+K
Sbjct: 94 LEVE-VPAKIHLPKTLEGMGAVHALRGEVVSIKIPFSGKPDPVITWQK 140
Score = 33.1 bits (74), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 20/70 (28%), Positives = 35/70 (50%), Gaps = 5/70 (7%)
Query: 21 SLKCIASGNPTPDIGWTLDGFELPTNN-RFVIGQFVSGHGDVISHVNISHVTVEDGGEYA 79
+L C +G+P P + W G E+ + ++ I +F G+ +I I+ VT +D Y
Sbjct: 23 TLVCKVTGHPKPIVKWYRQGKEIIADGLKYRIQEFKGGYHQLI----IASVTDDDATVYQ 78
Query: 80 CVAENRAGTC 89
A N+ G+
Sbjct: 79 VRATNQGGSV 88
Score = 29.6 bits (65), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 29/82 (35%), Positives = 35/82 (42%), Gaps = 16/82 (19%)
Query: 17 GPAVSLKCIASGNPTPDIGWTLDGFELPTNNRFVIGQFVSGHGDVI------SHVNISHV 70
G VS+K SG P P I W G +L NN GH VI S V + V
Sbjct: 119 GEVVSIKIPFSGKPDPVITWQ-KGQDLIDNN---------GHYQVIVTRSFTSLVFPNGV 168
Query: 71 TVEDGGEYACVAENRAGTCEIT 92
+D G Y A+NR G + T
Sbjct: 169 ERKDAGFYVVCAKNRFGIDQKT 190
>pdb|2ILL|A Chain A, Anomalous Substructure Of Titin-A168169
Length = 195
Score = 37.7 bits (86), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 30/108 (27%), Positives = 51/108 (47%), Gaps = 19/108 (17%)
Query: 100 LIAWFKDGRQIPG----------RTSSTSLVINPVGREDRGIYQCIARRSDGDVAQGSAE 149
++ W++ G++I + L+I V +D +YQ A G V+ G+A
Sbjct: 33 IVKWYRQGKEIIADGLKYRIQEFKGGYHQLIIASVTDDDATVYQVRATNQGGSVS-GTAS 91
Query: 150 LQLGGLPYVRLIPK-------VTAIDGEGLSIKCPVAGYPIEEVHWEK 190
L++ +P +PK V A+ GE +SIK P +G P + W+K
Sbjct: 92 LEVE-VPAKIHLPKTLEGMGAVHALRGEVVSIKIPFSGKPDPVITWQK 138
Score = 33.1 bits (74), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 20/70 (28%), Positives = 35/70 (50%), Gaps = 5/70 (7%)
Query: 21 SLKCIASGNPTPDIGWTLDGFELPTNN-RFVIGQFVSGHGDVISHVNISHVTVEDGGEYA 79
+L C +G+P P + W G E+ + ++ I +F G+ +I I+ VT +D Y
Sbjct: 21 TLVCKVTGHPKPIVKWYRQGKEIIADGLKYRIQEFKGGYHQLI----IASVTDDDATVYQ 76
Query: 80 CVAENRAGTC 89
A N+ G+
Sbjct: 77 VRATNQGGSV 86
Score = 29.6 bits (65), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 29/82 (35%), Positives = 35/82 (42%), Gaps = 16/82 (19%)
Query: 17 GPAVSLKCIASGNPTPDIGWTLDGFELPTNNRFVIGQFVSGHGDVI------SHVNISHV 70
G VS+K SG P P I W G +L NN GH VI S V + V
Sbjct: 117 GEVVSIKIPFSGKPDPVITWQ-KGQDLIDNN---------GHYQVIVTRSFTSLVFPNGV 166
Query: 71 TVEDGGEYACVAENRAGTCEIT 92
+D G Y A+NR G + T
Sbjct: 167 ERKDAGFYVVCAKNRFGIDQKT 188
>pdb|2NZI|A Chain A, Crystal Structure Of Domains A168-A170 From Titin
pdb|2NZI|B Chain B, Crystal Structure Of Domains A168-A170 From Titin
Length = 305
Score = 37.7 bits (86), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 30/108 (27%), Positives = 51/108 (47%), Gaps = 19/108 (17%)
Query: 100 LIAWFKDGRQIPG----------RTSSTSLVINPVGREDRGIYQCIARRSDGDVAQGSAE 149
++ W++ G++I + L+I V +D +YQ A G V+ G+A
Sbjct: 35 IVKWYRQGKEIIADGLKYRIQEFKGGYHQLIIASVTDDDATVYQVRATNQGGSVS-GTAS 93
Query: 150 LQLGGLPYVRLIPK-------VTAIDGEGLSIKCPVAGYPIEEVHWEK 190
L++ +P +PK V A+ GE +SIK P +G P + W+K
Sbjct: 94 LEVE-VPAKIHLPKTLEGMGAVHALRGEVVSIKIPFSGKPDPVITWQK 140
Score = 33.5 bits (75), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 45/182 (24%), Positives = 70/182 (38%), Gaps = 51/182 (28%)
Query: 21 SLKCIASGNPTPDIGWTLDGFELPTNN-RFVIGQFVSGHGDVISHVNISHVTVEDGGEYA 79
+L C +G+P P + W G E+ + ++ I +F G+ +I I+ VT +D Y
Sbjct: 23 TLVCKVTGHPKPIVKWYRQGKEIIADGLKYRIQEFKGGYHQLI----IASVTDDDATVYQ 78
Query: 80 CVAENRAGTCEIT-----------------------------------PYDSGPY-LIAW 103
A N+ G+ T P+ P +I W
Sbjct: 79 VRATNQGGSVSGTASLEVEVPAKIHLPKTLEGMGAVHALRGEVVSIKIPFSGKPDPVITW 138
Query: 104 FK-------DGR-QIPGRTSSTSLVI-NPVGREDRGIYQCIARRSDGDVAQGSAELQLGG 154
K +G Q+ S TSLV N V R+D G Y A+ G + Q + EL +
Sbjct: 139 QKGQDLIDNNGHYQVIVTRSFTSLVFPNGVERKDAGFYVVCAKNRFG-IDQKTVELDVAD 197
Query: 155 LP 156
+P
Sbjct: 198 VP 199
Score = 29.6 bits (65), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 29/82 (35%), Positives = 35/82 (42%), Gaps = 16/82 (19%)
Query: 17 GPAVSLKCIASGNPTPDIGWTLDGFELPTNNRFVIGQFVSGHGDVI------SHVNISHV 70
G VS+K SG P P I W G +L NN GH VI S V + V
Sbjct: 119 GEVVSIKIPFSGKPDPVITWQ-KGQDLIDNN---------GHYQVIVTRSFTSLVFPNGV 168
Query: 71 TVEDGGEYACVAENRAGTCEIT 92
+D G Y A+NR G + T
Sbjct: 169 ERKDAGFYVVCAKNRFGIDQKT 190
>pdb|1FHG|A Chain A, High Resolution Refinement Of Telokin
Length = 154
Score = 37.0 bits (84), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 24/89 (26%), Positives = 36/89 (40%), Gaps = 6/89 (6%)
Query: 3 PILTYSFIEQTLQPGPAVSLKCIASGNPTPDIGWTLDGFELPTNNRFVIGQFVSGHGDVI 62
P T + ++ + G A C G P P++ W D + + F I G+
Sbjct: 42 PYFTKTILDMEVVEGSAARFDCKVEGYPDPEVMWFKDDNPVKESRHFQIDYDEEGN---- 97
Query: 63 SHVNISHVTVEDGGEYACVAENRAG--TC 89
+ IS V +D +Y C A N G TC
Sbjct: 98 CSLTISEVCGDDDAKYTCKAVNSLGEATC 126
Score = 32.0 bits (71), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 32/117 (27%), Positives = 47/117 (40%), Gaps = 15/117 (12%)
Query: 107 GRQIPGRTSSTSLVINPVGREDRGIYQCIARRSDGDVAQGSAELQLGGLPY-VRLIPKVT 165
GR+ G + ++ + N V ED + + VA+ ++ PY + I +
Sbjct: 6 GRKASGSSPTSPINANKVENEDAFLEE---------VAEEKPHVK----PYFTKTILDME 52
Query: 166 AIDGEGLSIKCPVAGYPIEEVHWEKVP-PKIESFAFPFDGLPEGARTRVICGVTHGD 221
++G C V GYP EV W K P ES F D EG + I V D
Sbjct: 53 VVEGSAARFDCKVEGYPDPEVMWFKDDNPVKESRHFQIDYDEEGNCSLTISEVCGDD 109
Score = 28.1 bits (61), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 26/106 (24%), Positives = 39/106 (36%), Gaps = 4/106 (3%)
Query: 183 IEEVHWEK--VPPKIESFAFPFDGLPEGARTRVICGVTHGDPPLTIRWLKDGKPLSPRFP 240
+EEV EK V P + + EG+ R C V G P + W KD P+
Sbjct: 30 LEEVAEEKPHVKPYFTKTILDME-VVEGSAARFDCKV-EGYPDPEVMWFKDDNPVKESRH 87
Query: 241 XXXXXXXXXXXXXXXXXXXAAHSGEYTCVASNTAAQARYSSKLQVK 286
+YTC A N+ +A +++L V+
Sbjct: 88 FQIDYDEEGNCSLTISEVCGDDDAKYTCKAVNSLGEATCTAELLVE 133
>pdb|2DM2|A Chain A, Solution Structure Of The First Ig Domain Of Human
Palladin
Length = 110
Score = 37.0 bits (84), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 23/91 (25%), Positives = 39/91 (42%), Gaps = 5/91 (5%)
Query: 3 PILTYSFIEQTLQPGPAVSLKCIASGNPTPDIGWTLDGFEL-PTNNRFVIGQFVSGHGDV 61
P + G V+ C +GNP P I W DG ++ P ++ + I + + G
Sbjct: 9 PFFEMKLKHYKIFEGMPVTFTCRVAGNPKPKIYWFKDGKQISPKSDHYTIQRDLDG---- 64
Query: 62 ISHVNISHVTVEDGGEYACVAENRAGTCEIT 92
++ + T++D G Y +A N G T
Sbjct: 65 TCSLHTTASTLDDDGNYTIMAANPQGRISCT 95
Score = 29.6 bits (65), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 15/37 (40%), Positives = 20/37 (54%), Gaps = 5/37 (13%)
Query: 202 FDGLPEGARTRVICGVTHGDPPLTIRWLKDGKPLSPR 238
F+G+P RV G+P I W KDGK +SP+
Sbjct: 21 FEGMPVTFTCRVA-----GNPKPKIYWFKDGKQISPK 52
>pdb|1TLK|A Chain A, X-Ray Structure Determination Of Telokin, The C-Terminal
Domain Of Myosin Light Chain Kinase, At 2.8 Angstroms
Resolution
Length = 154
Score = 37.0 bits (84), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 24/89 (26%), Positives = 36/89 (40%), Gaps = 6/89 (6%)
Query: 3 PILTYSFIEQTLQPGPAVSLKCIASGNPTPDIGWTLDGFELPTNNRFVIGQFVSGHGDVI 62
P T + ++ + G A C G P P++ W D + + F I G+
Sbjct: 42 PYFTKTILDMDVVEGSAARFDCKVEGYPDPEVMWFKDDNPVKESRHFQIDYDEEGN---- 97
Query: 63 SHVNISHVTVEDGGEYACVAENRAG--TC 89
+ IS V +D +Y C A N G TC
Sbjct: 98 CSLTISEVCGDDDAKYTCKAVNSLGEATC 126
Score = 32.0 bits (71), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 32/117 (27%), Positives = 47/117 (40%), Gaps = 15/117 (12%)
Query: 107 GRQIPGRTSSTSLVINPVGREDRGIYQCIARRSDGDVAQGSAELQLGGLPY-VRLIPKVT 165
GR+ G + ++ + N V ED + + VA+ ++ PY + I +
Sbjct: 6 GRKASGSSPTSPINANKVENEDAFLEE---------VAEEKPHVK----PYFTKTILDMD 52
Query: 166 AIDGEGLSIKCPVAGYPIEEVHWEKVP-PKIESFAFPFDGLPEGARTRVICGVTHGD 221
++G C V GYP EV W K P ES F D EG + I V D
Sbjct: 53 VVEGSAARFDCKVEGYPDPEVMWFKDDNPVKESRHFQIDYDEEGNCSLTISEVCGDD 109
Score = 30.0 bits (66), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 27/106 (25%), Positives = 39/106 (36%), Gaps = 4/106 (3%)
Query: 183 IEEVHWEK--VPPKIESFAFPFDGLPEGARTRVICGVTHGDPPLTIRWLKDGKPLSPRFP 240
+EEV EK V P D + EG+ R C V G P + W KD P+
Sbjct: 30 LEEVAEEKPHVKPYFTKTILDMD-VVEGSAARFDCKV-EGYPDPEVMWFKDDNPVKESRH 87
Query: 241 XXXXXXXXXXXXXXXXXXXAAHSGEYTCVASNTAAQARYSSKLQVK 286
+YTC A N+ +A +++L V+
Sbjct: 88 FQIDYDEEGNCSLTISEVCGDDDAKYTCKAVNSLGEATCTAELLVE 133
>pdb|1TNM|A Chain A, Tertiary Structure Of An Immunoglobulin-Like Domain From
The Muscle Protein Titin: A New Member Of The I Set
pdb|1TNN|A Chain A, Tertiary Structure Of An Immunoglobulin-Like Domain From
The Muscle Protein Titin: A New Member Of The I Set
Length = 100
Score = 35.8 bits (81), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 23/78 (29%), Positives = 29/78 (37%), Gaps = 5/78 (6%)
Query: 13 TLQPGPAVSLKCIASGNPTPDIGWTLDGFELPTNNRFVIGQFVSGHGDVISHVNISHVTV 72
T+ G + C G P P + W G L T+ R + S IS V
Sbjct: 19 TVYEGESARFSCDTDGEPVPTVTWLRKGQVLSTSARHQVTT-----TKYKSTFEISSVQA 73
Query: 73 EDGGEYACVAENRAGTCE 90
D G Y+ V EN G E
Sbjct: 74 SDEGNYSVVVENSEGKQE 91
>pdb|1NCT|A Chain A, Titin Module M5, N-Terminally Extended, Nmr
pdb|1NCU|A Chain A, Titin Module M5, N-Terminally Extended, Nmr
Length = 106
Score = 35.8 bits (81), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 23/78 (29%), Positives = 29/78 (37%), Gaps = 5/78 (6%)
Query: 13 TLQPGPAVSLKCIASGNPTPDIGWTLDGFELPTNNRFVIGQFVSGHGDVISHVNISHVTV 72
T+ G + C G P P + W G L T+ R + S IS V
Sbjct: 25 TVYEGESARFSCDTDGEPVPTVTWLRKGQVLSTSARHQVTT-----TKYKSTFEISSVQA 79
Query: 73 EDGGEYACVAENRAGTCE 90
D G Y+ V EN G E
Sbjct: 80 SDEGNYSVVVENSEGKQE 97
>pdb|2WP3|T Chain T, Crystal Structure Of The Titin M10-Obscurin Like 1 Ig
Complex
pdb|2WWK|T Chain T, Crystal Structure Of The Titin M10-Obscurin Like 1 Ig
F17r Mutant Complex
pdb|2WWM|D Chain D, Crystal Structure Of The Titin M10-Obscurin Like 1 Ig
Complex In Space Group P1
pdb|2WWM|T Chain T, Crystal Structure Of The Titin M10-Obscurin Like 1 Ig
Complex In Space Group P1
pdb|2Y9R|T Chain T, Crystal Structure Of The M10 Domain Of Titin
Length = 102
Score = 35.8 bits (81), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 19/76 (25%), Positives = 39/76 (51%), Gaps = 3/76 (3%)
Query: 13 TLQPGPAVSLKCIASGNPTPDIGWTLDGFELPTNNRFVIGQFVSGHGDVISHVNISHVTV 72
++ G +++ C +G PTP++ W+ G ++ + + G+F + D ++ + I V
Sbjct: 18 SIDEGKVLTVACAFTGEPTPEVTWSCGGRKIHSQEQ---GRFHIENTDDLTTLIIMDVQK 74
Query: 73 EDGGEYACVAENRAGT 88
+DGG Y N G+
Sbjct: 75 QDGGLYTLSLGNEFGS 90
>pdb|3ZYO|A Chain A, Crystal Structure Of The N-Terminal Leucine Rich Repeats
And Immunoglobulin Domain Of Netrin-G Ligand-3
Length = 411
Score = 35.8 bits (81), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 22/71 (30%), Positives = 33/71 (46%), Gaps = 5/71 (7%)
Query: 17 GPAVSLKCIASGNPTPDIGWTLDGFELPTNNRFVIGQFVSGHGDVISHVNISHVTVEDGG 76
G A LKC +G + W L T+ + + V G + N ++VTV+D G
Sbjct: 327 GMAAELKC-RTGTSMTSVNWLTPNGTLMTHGSYRVRISVLHDGTL----NFTNVTVQDTG 381
Query: 77 EYACVAENRAG 87
+Y C+ N AG
Sbjct: 382 QYTCMVTNSAG 392
>pdb|3KNB|A Chain A, Crystal Structure Of The Titin C-Terminus In Complex
With Obscurin- Like 1
pdb|3Q5O|A Chain A, Crystal Structure Of Human Titin Domain M10
pdb|3Q5O|B Chain B, Crystal Structure Of Human Titin Domain M10
Length = 100
Score = 35.8 bits (81), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 19/76 (25%), Positives = 39/76 (51%), Gaps = 3/76 (3%)
Query: 13 TLQPGPAVSLKCIASGNPTPDIGWTLDGFELPTNNRFVIGQFVSGHGDVISHVNISHVTV 72
++ G +++ C +G PTP++ W+ G ++ + + G+F + D ++ + I V
Sbjct: 16 SIDEGKVLTVACAFTGEPTPEVTWSCGGRKIHSQEQ---GRFHIENTDDLTTLIIMDVQK 72
Query: 73 EDGGEYACVAENRAGT 88
+DGG Y N G+
Sbjct: 73 QDGGLYTLSLGNEFGS 88
>pdb|3PUC|A Chain A, Atomic Resolution Structure Of Titin Domain M7
Length = 99
Score = 35.4 bits (80), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 21/96 (21%), Positives = 37/96 (38%), Gaps = 9/96 (9%)
Query: 1 TPPILTYSFIEQTLQPGPAVSLKCIASGNPTPDIGWTLDGFELPTNNRFVIGQFVSGHGD 60
+ P++ + T+ A+G P P WT DG + ++ + + G
Sbjct: 5 SKPVIVTGLQDTTVSSDSVAKFAVKATGEPRPTAIWTKDGKAITQGGKYKLSEDKGGF-- 62
Query: 61 VISHVNISHVTVEDGGEYACVAENRAG----TCEIT 92
+ I D G Y C +N AG +C++T
Sbjct: 63 ---FLEIHKTDTSDSGLYTCTVKNSAGSVSSSCKLT 95
>pdb|4HWU|A Chain A, Crystal Structure Of The Ig-C2 Type 1 Domain From Mouse
Fibroblast Growth Factor Receptor 2 (Fgfr2)
[nysgrc-005912]
pdb|4HWU|B Chain B, Crystal Structure Of The Ig-C2 Type 1 Domain From Mouse
Fibroblast Growth Factor Receptor 2 (Fgfr2)
[nysgrc-005912]
Length = 95
Score = 35.0 bits (79), Expect = 0.044, Method: Compositional matrix adjust.
Identities = 22/67 (32%), Positives = 30/67 (44%), Gaps = 11/67 (16%)
Query: 16 PGPAVSLKCIASGNPTPDIGWTLDGFELPTNNRFVIGQFVSGHGDVISHVNISHVTVEDG 75
PG ++ L+C+ I WT DG L NNR V+ + ++ I T D
Sbjct: 15 PGESLELQCMLKDAAV--ISWTKDGVHLGPNNRTVL---------IGEYLQIKGATPRDS 63
Query: 76 GEYACVA 82
G YAC A
Sbjct: 64 GLYACTA 70
>pdb|2V9Q|A Chain A, First And Second Ig Domains From Human Robo1
pdb|2V9R|A Chain A, First And Second Ig Domains From Human Robo1 (Form 2)
Length = 212
Score = 34.3 bits (77), Expect = 0.080, Method: Compositional matrix adjust.
Identities = 30/112 (26%), Positives = 43/112 (38%), Gaps = 4/112 (3%)
Query: 2 PPILTYSFIEQTLQPGPAVSLKCIASGNPTPDIGWTLDGFELPTNNRFVIGQFVSGHGDV 61
PP + + + G +L C A G PTP I W G + T+ +
Sbjct: 9 PPRIVEHPSDLIVSKGEPATLNCKAEGRPTPTIEWYKGGERVETDKDDPRSHRMLLPSGS 68
Query: 62 ISHVNISH--VTVEDGGEYACVAENRAGTCEITPYDSGPYLIAWFKDGRQIP 111
+ + I H + D G Y CVA N G E +D+ + D RQ P
Sbjct: 69 LFFLRIVHGRKSRPDEGVYVCVARNYLG--EAVSHDASLEVAILRDDFRQNP 118
Score = 29.6 bits (65), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 19/63 (30%), Positives = 27/63 (42%), Gaps = 8/63 (12%)
Query: 28 GNPTPDIGWTLDGFELPTNNRFVIGQFVSGHGDVISHVNISHVTVEDGGEYACVAENRAG 87
G+P P I W DG L + + + G +I++ S D G+Y CV N G
Sbjct: 138 GHPEPTISWKKDGSPLDDKDERIT---IRGGKLMITYTRKS-----DAGKYVCVGTNMVG 189
Query: 88 TCE 90
E
Sbjct: 190 ERE 192
Score = 29.3 bits (64), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 20/68 (29%), Positives = 32/68 (47%), Gaps = 3/68 (4%)
Query: 126 REDRGIYQCIARRSDGDVAQGSAELQLGGL--PYVRLIPKVTAIDGEGLSIKC-PVAGYP 182
R D G+Y C+AR G+ A L++ L + + V GE ++C P G+P
Sbjct: 81 RPDEGVYVCVARNYLGEAVSHDASLEVAILRDDFRQNPSDVMVAVGEPAVMECQPPRGHP 140
Query: 183 IEEVHWEK 190
+ W+K
Sbjct: 141 EPTISWKK 148
>pdb|3QQN|A Chain A, The Retinal Specific Cd147 Ig0 Domain: From Molecular
Structure To Biological Activity
pdb|3QQN|B Chain B, The Retinal Specific Cd147 Ig0 Domain: From Molecular
Structure To Biological Activity
Length = 137
Score = 34.3 bits (77), Expect = 0.086, Method: Compositional matrix adjust.
Identities = 24/83 (28%), Positives = 35/83 (42%), Gaps = 8/83 (9%)
Query: 10 IEQTLQPGPAVSLKCIASGNPTPDIGWTLDG-------FELPTNNRF-VIGQFVSGHGDV 61
+ Q G +V L C A G+P P+I W +G +L R + + H
Sbjct: 29 LSQQRWVGGSVELHCEAVGSPVPEIQWWFEGQGPNDIXSQLWDGARLDRVHIHATYHQHA 88
Query: 62 ISHVNISHVTVEDGGEYACVAEN 84
S ++I + ED G Y C A N
Sbjct: 89 ASTISIDTLVEEDTGTYECRASN 111
>pdb|3MTR|A Chain A, Crystal Structure Of The Ig5-Fn1 Tandem Of Human Ncam
pdb|3MTR|B Chain B, Crystal Structure Of The Ig5-Fn1 Tandem Of Human Ncam
Length = 215
Score = 33.9 bits (76), Expect = 0.093, Method: Compositional matrix adjust.
Identities = 19/59 (32%), Positives = 27/59 (45%), Gaps = 12/59 (20%)
Query: 88 TCEITPYDSGPYLIAWFKDGRQIPGRT----------SSTSLVINPVGREDRGIYQCIA 136
TCE+ Y S I+WF+DG+ +P S++ L + P D G Y C A
Sbjct: 39 TCEVFAYPSA--TISWFRDGQLLPSSNYSNIKIYNTPSASYLEVTPDSENDFGNYNCTA 95
Score = 33.9 bits (76), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 21/71 (29%), Positives = 33/71 (46%), Gaps = 3/71 (4%)
Query: 17 GPAVSLKCIASGNPTPDIGWTLDGFELPTNNRFVIGQFVSGHGDVISHVNISHVTVEDGG 76
G V++ C P+ I W DG LP++N I + + S++ ++ + D G
Sbjct: 33 GNQVNITCEVFAYPSATISWFRDGQLLPSSNYSNIKIYNTPSA---SYLEVTPDSENDFG 89
Query: 77 EYACVAENRAG 87
Y C A NR G
Sbjct: 90 NYNCTAVNRIG 100
>pdb|3QR2|A Chain A, Wild Type Cd147 Ig0 Domain
pdb|3QR2|B Chain B, Wild Type Cd147 Ig0 Domain
Length = 137
Score = 33.9 bits (76), Expect = 0.094, Method: Compositional matrix adjust.
Identities = 24/83 (28%), Positives = 35/83 (42%), Gaps = 8/83 (9%)
Query: 10 IEQTLQPGPAVSLKCIASGNPTPDIGWTLDG-------FELPTNNRF-VIGQFVSGHGDV 61
+ Q G +V L C A G+P P+I W +G +L R + + H
Sbjct: 29 LSQQRWVGGSVELHCEAVGSPVPEIQWWFEGQGPNDICSQLWDGARLDRVHIHATYHQHA 88
Query: 62 ISHVNISHVTVEDGGEYACVAEN 84
S ++I + ED G Y C A N
Sbjct: 89 ASTISIDTLVEEDTGTYECRASN 111
>pdb|1NBQ|A Chain A, Crystal Structure Of Human Junctional Adhesion Molecule
Type 1
pdb|1NBQ|B Chain B, Crystal Structure Of Human Junctional Adhesion Molecule
Type 1
Length = 209
Score = 33.5 bits (75), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 41/178 (23%), Positives = 54/178 (30%), Gaps = 60/178 (33%)
Query: 20 VSLKCIASGNPTPDIGWTLDGFELPTNNRFVI--GQFVSGHGDVISH----VNISHVTVE 73
V L C SG +P + W D + R V + + + D ++ + VT E
Sbjct: 22 VKLSCAYSGFSSPRVEWKFDQGD---TTRLVCYNNKITASYEDRVTFLPTGITFKSVTRE 78
Query: 74 DGGEYACVAENRAG-----------------------------------TCEITPYDSGP 98
D G Y C+ G TC S P
Sbjct: 79 DTGTYTCMVSEEGGNSYGEVKVKLIVLVPPSKPTVNIPSSATIGNRAVLTCSEQD-GSPP 137
Query: 99 YLIAWFKDGRQIPGRTSST---------------SLVINPVGREDRGIYQCIARRSDG 141
WFKDG +P ST LV +P+ D G Y C AR G
Sbjct: 138 SEYTWFKDGIVMPTNPKSTRAFSNSSYVLNPTTGELVFDPLSASDTGEYSCEARNGYG 195
Score = 32.0 bits (71), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 36/162 (22%), Positives = 50/162 (30%), Gaps = 43/162 (26%)
Query: 117 TSLVINPVGREDRGIYQCIARRSDGDVAQGSAELQLGGLPYVRLIPKVTAIDGEGLSIKC 176
T + V RED G Y C+ G+ + G +++L L
Sbjct: 68 TGITFKSVTREDTGTYTCMVSEEGGN-SYGEVKVKLIVL--------------------- 105
Query: 177 PVAGYPIEEVHWEKVPPKIESFAFPFDGLPEGARTRVICGVTHGDPPLTIRWLKDG--KP 234
VPP + P G R + C G PP W KDG P
Sbjct: 106 --------------VPPSKPTVNIPSSATI-GNRAVLTCSEQDGSPPSEYTWFKDGIVMP 150
Query: 235 LSPR----FPXXXXXXXXXXXXXXXXXXXAAHSGEYTCVASN 272
+P+ F A+ +GEY+C A N
Sbjct: 151 TNPKSTRAFSNSSYVLNPTTGELVFDPLSASDTGEYSCEARN 192
Score = 28.5 bits (62), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 18/63 (28%), Positives = 27/63 (42%), Gaps = 2/63 (3%)
Query: 28 GNPTPDIGWTLDGFELPTNNRFVIGQFVSGH--GDVISHVNISHVTVEDGGEYACVAENR 85
G+P + W DG +PTN + S + + ++ D GEY+C A N
Sbjct: 134 GSPPSEYTWFKDGIVMPTNPKSTRAFSNSSYVLNPTTGELVFDPLSASDTGEYSCEARNG 193
Query: 86 AGT 88
GT
Sbjct: 194 YGT 196
>pdb|1DR9|A Chain A, Crystal Structure Of A Soluble Form Of B7-1 (Cd80)
Length = 201
Score = 33.5 bits (75), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 31/130 (23%), Positives = 52/130 (40%), Gaps = 35/130 (26%)
Query: 107 GRQIPGRTSSTSLVINPVGREDRGIYQCIARRSDGDVAQGSAELQLGGLPYVRLIPKVTA 166
R I T++ S+VI + D G Y+C+ + + D + + +VT
Sbjct: 55 NRTIFDITNNLSIVILALRPSDEGTYECVVLKYEKDAFKREH------------LAEVT- 101
Query: 167 IDGEGLSIKCPVAGYPIEEVHWEKVPPKIESFAFPFDGLPEGARTRVICGVTHGDPPLTI 226
LS+K A +P P I F P + R+IC + G P +
Sbjct: 102 -----LSVK---ADFP---------TPSISDFEIPTSNIR-----RIICSTSGGFPEPHL 139
Query: 227 RWLKDGKPLS 236
WL++G+ L+
Sbjct: 140 SWLENGEELN 149
>pdb|1I8L|A Chain A, Human B7-1CTLA-4 Co-Stimulatory Complex
pdb|1I8L|B Chain B, Human B7-1CTLA-4 Co-Stimulatory Complex
Length = 208
Score = 33.5 bits (75), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 31/130 (23%), Positives = 52/130 (40%), Gaps = 35/130 (26%)
Query: 107 GRQIPGRTSSTSLVINPVGREDRGIYQCIARRSDGDVAQGSAELQLGGLPYVRLIPKVTA 166
R I T++ S+VI + D G Y+C+ + + D + + +VT
Sbjct: 55 NRTIFDITNNLSIVILALRPSDEGTYECVVLKYEKDAFKREH------------LAEVT- 101
Query: 167 IDGEGLSIKCPVAGYPIEEVHWEKVPPKIESFAFPFDGLPEGARTRVICGVTHGDPPLTI 226
LS+K A +P P I F P + R+IC + G P +
Sbjct: 102 -----LSVK---ADFP---------TPSISDFEIPTSNIR-----RIICSTSGGFPEPHL 139
Query: 227 RWLKDGKPLS 236
WL++G+ L+
Sbjct: 140 SWLENGEELN 149
>pdb|1E07|A Chain A, Model Of Human Carcinoembryonic Antigen By Homology
Modelling And Curve-Fitting To Experimental Solution
Scattering Data
Length = 642
Score = 33.1 bits (74), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 21/73 (28%), Positives = 31/73 (42%), Gaps = 16/73 (21%)
Query: 15 QPGPAVSLKCIASGNPTPDIGWTLDGFELPTNNRFVIGQFVSGHGDVISHVNISHVTVED 74
+PG +SL C A+ NP W +DG + H + IS++T ++
Sbjct: 394 RPGVNLSLSCHAASNPPAQYSWLIDG-------------NIQQH---TQELFISNITEKN 437
Query: 75 GGEYACVAENRAG 87
G Y C A N A
Sbjct: 438 SGLYTCQANNSAS 450
Score = 32.3 bits (72), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 36/135 (26%), Positives = 48/135 (35%), Gaps = 36/135 (26%)
Query: 6 TYSFIEQTLQPGPAVSLKCIASGNPTPDIGWTLDGFELPTNNRFVIGQFVSGHGDVISHV 65
T S + + + G ++L C A+ NP W FV G F ++
Sbjct: 207 TISPLNTSYRSGENLNLSCHAASNPPAQYSW------------FVNGTFQQSTQELF--- 251
Query: 66 NISHVTVEDGGEYACVAE------NRAGTCEITPYDSGPYLIAWFKDGRQIPGRTSSTSL 119
I ++TV + G Y C A NR IT Y P P TS+ S
Sbjct: 252 -IPNITVNNSGSYTCQAHNSDTGLNRTTVTTITVYAEPPK-----------PFITSNNS- 298
Query: 120 VINPVGREDRGIYQC 134
NPV ED C
Sbjct: 299 --NPVEDEDAVALTC 311
Score = 30.8 bits (68), Expect = 0.80, Method: Compositional matrix adjust.
Identities = 18/70 (25%), Positives = 29/70 (41%), Gaps = 16/70 (22%)
Query: 17 GPAVSLKCIASGNPTPDIGWTLDGFELPTNNRFVIGQFVSGHGDVISHVNISHVTVEDGG 76
G ++L C ++ NP+P W ++G H V+ I+ +T + G
Sbjct: 574 GANLNLSCHSASNPSPQYSWRINGIP-------------QQHTQVLF---IAKITPNNNG 617
Query: 77 EYACVAENRA 86
YAC N A
Sbjct: 618 TYACFVSNLA 627
>pdb|1RHF|A Chain A, Crystal Structure Of Human Tyro3-D1d2
pdb|1RHF|B Chain B, Crystal Structure Of Human Tyro3-D1d2
Length = 182
Score = 33.1 bits (74), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 42/175 (24%), Positives = 62/175 (35%), Gaps = 35/175 (20%)
Query: 10 IEQTLQPGPAVSLKCIASGNPTPDIGWTLDG--------FELPTNNRFVIGQFVSGHGDV 61
++ T+ G V L C G PDI W DG +P + + IG F+S
Sbjct: 10 VKLTVSQGQPVKLNCSVEGXEEPDIQWVKDGAVVQNLDQLYIPVSEQHWIG-FLSLKSVE 68
Query: 62 ISHVNISHVTVEDGGEYACVAENRAGTCEITPYDS------------------------G 97
S VEDGGE +++ T E P+ +
Sbjct: 69 RSDAGRYWCQVEDGGETE-ISQPVWLTVEGVPFFTVEPKDLAVPPNAPFQLSCEAVGPPE 127
Query: 98 PYLIAWFKDGRQIPGRTSSTSLVINPVGREDRGIYQCIARRSDGDVAQGSAELQL 152
P I W++ +I G S S V+N G + C A G + +A + L
Sbjct: 128 PVTIVWWRGTTKIGGPAPSPS-VLNVTGVTQSTXFSCEAHNLKGLASSRTATVHL 181
>pdb|1U2H|A Chain A, X-Ray Structure Of The N-Terminally Truncated Human
Apep-1
Length = 99
Score = 32.7 bits (73), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 22/92 (23%), Positives = 35/92 (38%), Gaps = 6/92 (6%)
Query: 1 TPPILTYSFIEQTLQPGPAVSLKCIASGNPTPDIGWTLDGFELPTNNRFVIGQFVSGHGD 60
PP S ++Q+++ G V + G P P + W + + + R +F
Sbjct: 4 APPTFKVSLMDQSVREGQDVIMSIRVQGEPKPVVSWLRNRQPVRPDQR----RFAEEAEG 59
Query: 61 VISHVNISHVTVEDGGEYACVAENRAGT--CE 90
+ + I D G Y C A N G CE
Sbjct: 60 GLCRLRILAAERGDAGFYTCKAVNEYGARQCE 91
>pdb|2YR3|A Chain A, Solution Structure Of The Fourth Ig-Like Domain From
Myosin Light Chain Kinase, Smooth Muscle
Length = 99
Score = 32.7 bits (73), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 20/66 (30%), Positives = 31/66 (46%), Gaps = 8/66 (12%)
Query: 22 LKCIASGNPTPDIGWTLDGFELPTNNRFVIGQFVSGHGDVISHVNISHVTVEDGGEYACV 81
L+C G P P I W L+G + ++ +G ++ ++I ED G Y C+
Sbjct: 31 LQCSVRGTPVPRITWLLNGQPI----QYARSTCEAG----VAELHIQDALPEDHGTYTCL 82
Query: 82 AENRAG 87
AEN G
Sbjct: 83 AENALG 88
>pdb|4DKD|C Chain C, Crystal Structure Of Human Interleukin-34 Bound To Human
Csf-1r
Length = 292
Score = 32.7 bits (73), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 26/89 (29%), Positives = 33/89 (37%), Gaps = 8/89 (8%)
Query: 2 PPILTYSFIEQTLQPGPAVSLKCIASGNPTPDIGWTLDGFELPTNNRFVIGQFVSGHGDV 61
PP LT E G A + C AS + D F N + I Q H +
Sbjct: 186 PPALTLVPAELVRIRGEAAQIVCSASS-----VDVNFDVFLQHNNTKLAIPQQSDFHNNR 240
Query: 62 ISHV---NISHVTVEDGGEYACVAENRAG 87
V N+ V + G Y+CVA N G
Sbjct: 241 YQKVLTLNLDQVDFQHAGNYSCVASNVQG 269
>pdb|3ZYJ|A Chain A, Netring1 In Complex With Ngl1
pdb|3ZYJ|C Chain C, Netring1 In Complex With Ngl1
Length = 440
Score = 32.7 bits (73), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 22/72 (30%), Positives = 33/72 (45%), Gaps = 5/72 (6%)
Query: 17 GPAVSLKCIASGNPTPDIGWTLDGFELPTNNRFVIGQFVSGHGDVISHVNISHVTVEDGG 76
G A LKC AS + T + W + T+ + + V G + N ++VTV+D G
Sbjct: 356 GMAAELKCRASTSLT-SVSWITPNGTVMTHGAYKVRIAVLSDGTL----NFTNVTVQDTG 410
Query: 77 EYACVAENRAGT 88
Y C+ N G
Sbjct: 411 MYTCMVSNSVGN 422
>pdb|3RBG|A Chain A, Crystal Structure Analysis Of Class-I Mhc Restricted
T-Cell Associated Molecule
pdb|3RBG|B Chain B, Crystal Structure Analysis Of Class-I Mhc Restricted
T-Cell Associated Molecule
pdb|3RBG|C Chain C, Crystal Structure Analysis Of Class-I Mhc Restricted
T-Cell Associated Molecule
pdb|3RBG|D Chain D, Crystal Structure Analysis Of Class-I Mhc Restricted
T-Cell Associated Molecule
Length = 124
Score = 32.3 bits (72), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 20/74 (27%), Positives = 37/74 (50%), Gaps = 6/74 (8%)
Query: 13 TLQPGPAVSLKCIASGNPTPDIGW-TLDGFELPTNNRFVIG----QFVSGHGDVISHVNI 67
T++ G ++LKC+ S + W T GF + N V+ Q + + +S + +
Sbjct: 12 TVEEGQTLTLKCVTSLRKNSSLQWLTPSGFTIFLNEYPVLKNSKYQLLHHSANQLS-ITV 70
Query: 68 SHVTVEDGGEYACV 81
+VT++D G Y C+
Sbjct: 71 PNVTLQDEGVYKCL 84
>pdb|3V6B|R Chain R, Vegfr-2VEGF-E Complex Structure
Length = 424
Score = 32.3 bits (72), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 24/78 (30%), Positives = 37/78 (47%), Gaps = 5/78 (6%)
Query: 117 TSLVINPVGREDRGIYQCIARRSDGDVAQGSAELQLGGLPYVR----LIPKVTAIDGEGL 172
++L I+ V R D+G+Y C A S + S +++ P+V + V A GE +
Sbjct: 160 STLTIDGVTRSDQGLYTC-AASSGLMTKKNSTFVRVHEKPFVAFGSGMESLVEATVGERV 218
Query: 173 SIKCPVAGYPIEEVHWEK 190
I GYP E+ W K
Sbjct: 219 RIPAKYLGYPPPEIKWYK 236
>pdb|3BIK|A Chain A, Crystal Structure Of The Pd-1PD-L1 Complex
pdb|3BIS|A Chain A, Crystal Structure Of The Pd-L1
pdb|3BIS|B Chain B, Crystal Structure Of The Pd-L1
Length = 222
Score = 32.3 bits (72), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 18/75 (24%), Positives = 34/75 (45%), Gaps = 5/75 (6%)
Query: 116 STSLVINPVGREDRGIYQCIARRSDGDVAQGSAELQLGGLPYVRLIPKVTAID--GEGLS 173
+ +L I V +D G+Y+C+ D + + ++ PY ++ ++ +D
Sbjct: 79 NAALQITDVKLQDAGVYRCMISYGGADYKRITVKV---NAPYNKINQRILVVDPVTSEHE 135
Query: 174 IKCPVAGYPIEEVHW 188
+ C GYP EV W
Sbjct: 136 LTCQAEGYPKAEVIW 150
>pdb|3SBW|C Chain C, Crystal Structure Of The Complex Between The Extracellular
Domains Of Mouse Pd-1 Mutant And Human Pd-L1
Length = 222
Score = 32.3 bits (72), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 18/75 (24%), Positives = 34/75 (45%), Gaps = 5/75 (6%)
Query: 116 STSLVINPVGREDRGIYQCIARRSDGDVAQGSAELQLGGLPYVRLIPKVTAID--GEGLS 173
+ +L I V +D G+Y+C+ D + + ++ PY ++ ++ +D
Sbjct: 79 NAALQITDVKLQDAGVYRCMISYGGADYKRITVKV---NAPYNKINQRILVVDPVTSEHE 135
Query: 174 IKCPVAGYPIEEVHW 188
+ C GYP EV W
Sbjct: 136 LTCQAEGYPKAEVIW 150
>pdb|3FN3|A Chain A, Dimeric Structure Of Pd-L1
pdb|3FN3|B Chain B, Dimeric Structure Of Pd-L1
Length = 221
Score = 32.3 bits (72), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 18/75 (24%), Positives = 34/75 (45%), Gaps = 5/75 (6%)
Query: 116 STSLVINPVGREDRGIYQCIARRSDGDVAQGSAELQLGGLPYVRLIPKVTAID--GEGLS 173
+ +L I V +D G+Y+C+ D + + ++ PY ++ ++ +D
Sbjct: 79 NAALQITDVKLQDAGVYRCMISYGGADYKRITVKV---NAPYNKINQRILVVDPVTSEHE 135
Query: 174 IKCPVAGYPIEEVHW 188
+ C GYP EV W
Sbjct: 136 LTCQAEGYPKAEVIW 150
>pdb|2WWK|O Chain O, Crystal Structure Of The Titin M10-Obscurin Like 1 Ig
F17r Mutant Complex
Length = 109
Score = 32.3 bits (72), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 19/68 (27%), Positives = 28/68 (41%), Gaps = 5/68 (7%)
Query: 17 GPAVSLKCIASGNPTPDIGWTLDGFELPTNNRFVIGQFVSGHGDVISHVNISHVTVEDGG 76
G LKC+ G P P + W G +L + R + HG +++ + D G
Sbjct: 29 GAEAELKCVVLGEPPPVVVWEKGGQQLAASERLSFPADGAEHGLLLTAALPT-----DAG 83
Query: 77 EYACVAEN 84
Y C A N
Sbjct: 84 VYVCRARN 91
Score = 27.7 bits (60), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 18/55 (32%), Positives = 25/55 (45%), Gaps = 3/55 (5%)
Query: 157 YVRLIPKVTAIDGEGLSIKCPVAGYPIEEVHWEKVPPKI---ESFAFPFDGLPEG 208
++R V + G +KC V G P V WEK ++ E +FP DG G
Sbjct: 17 FLRRPRPVRVVSGAEAELKCVVLGEPPPVVVWEKGGQQLAASERLSFPADGAEHG 71
>pdb|3KNB|B Chain B, Crystal Structure Of The Titin C-Terminus In Complex
With Obscurin- Like 1
Length = 107
Score = 32.3 bits (72), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 19/68 (27%), Positives = 28/68 (41%), Gaps = 5/68 (7%)
Query: 17 GPAVSLKCIASGNPTPDIGWTLDGFELPTNNRFVIGQFVSGHGDVISHVNISHVTVEDGG 76
G LKC+ G P P + W G +L + R + HG +++ + D G
Sbjct: 28 GAEAELKCVVLGEPPPVVVWEKGGQQLAASERLSFPADGAEHGLLLTAALPT-----DAG 82
Query: 77 EYACVAEN 84
Y C A N
Sbjct: 83 VYVCRARN 90
Score = 28.1 bits (61), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 18/55 (32%), Positives = 25/55 (45%), Gaps = 3/55 (5%)
Query: 157 YVRLIPKVTAIDGEGLSIKCPVAGYPIEEVHWEKVPPKI---ESFAFPFDGLPEG 208
++R V + G +KC V G P V WEK ++ E +FP DG G
Sbjct: 16 FLRFPRPVRVVSGAEAELKCVVLGEPPPVVVWEKGGQQLAASERLSFPADGAEHG 70
>pdb|2WP3|O Chain O, Crystal Structure Of The Titin M10-Obscurin Like 1 Ig
Complex
pdb|2WWM|C Chain C, Crystal Structure Of The Titin M10-Obscurin Like 1 Ig
Complex In Space Group P1
pdb|2WWM|O Chain O, Crystal Structure Of The Titin M10-Obscurin Like 1 Ig
Complex In Space Group P1
Length = 109
Score = 32.0 bits (71), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 19/68 (27%), Positives = 28/68 (41%), Gaps = 5/68 (7%)
Query: 17 GPAVSLKCIASGNPTPDIGWTLDGFELPTNNRFVIGQFVSGHGDVISHVNISHVTVEDGG 76
G LKC+ G P P + W G +L + R + HG +++ + D G
Sbjct: 29 GAEAELKCVVLGEPPPVVVWEKGGQQLAASERLSFPADGAEHGLLLTAALPT-----DAG 83
Query: 77 EYACVAEN 84
Y C A N
Sbjct: 84 VYVCRARN 91
Score = 28.5 bits (62), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 18/55 (32%), Positives = 25/55 (45%), Gaps = 3/55 (5%)
Query: 157 YVRLIPKVTAIDGEGLSIKCPVAGYPIEEVHWEKVPPKI---ESFAFPFDGLPEG 208
++R V + G +KC V G P V WEK ++ E +FP DG G
Sbjct: 17 FLRFPRPVRVVSGAEAELKCVVLGEPPPVVVWEKGGQQLAASERLSFPADGAEHG 71
>pdb|3K0W|A Chain A, Crystal Structure Of The Tandem Ig-Like C2-Type 2 Domains
Of The Human Mucosa-Associated Lymphoid Tissue Lymphoma
Translocation Protein 1
Length = 218
Score = 32.0 bits (71), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 25/104 (24%), Positives = 41/104 (39%), Gaps = 17/104 (16%)
Query: 103 WFKDGRQIPGRTSSTSLVINPVGREDRGIYQCIARRSDGDVAQGSAELQLGGLP--YVRL 160
WFK ++IP +S L+ N V +D G Y C + ++L + +P + R
Sbjct: 52 WFKMNKEIPNGNTS-ELIFNAVHVKDAGFYVCRVNNNFTFEFSQWSQLDVCDIPESFQRS 110
Query: 161 IPKVTA--------------IDGEGLSIKCPVAGYPIEEVHWEK 190
+ V+ + G L ++C G PI W K
Sbjct: 111 VDGVSESKLQICVEPTSQKLMPGSTLVLQCVAVGSPIPHYQWFK 154
Score = 30.4 bits (67), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 14/33 (42%), Positives = 19/33 (57%), Gaps = 2/33 (6%)
Query: 12 QTLQPGPAVSLKCIASGNPTPDIGWTLDGFELP 44
Q L PG + L+C+A G+P P W + ELP
Sbjct: 128 QKLMPGSTLVLQCVAVGSPIPHYQWFKN--ELP 158
>pdb|2KKQ|A Chain A, Solution Nmr Structure Of The Ig-Like C2-Type 2 Domain Of
Human Myotilin. Northeast Structural Genomics Target
Hr3158
Length = 116
Score = 32.0 bits (71), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 25/91 (27%), Positives = 39/91 (42%), Gaps = 7/91 (7%)
Query: 3 PILTYSFIEQTLQPGPAVSLKCIASGNPTPDIGWTLDGFELPTN-NRFVIGQFVSGHGDV 61
P+ Y + + G +V L+C S P P + W + + N +R + Q +G +
Sbjct: 16 PMFIYKPQSKKVLEGDSVKLECQISAIPPPKLFWKRNNEMVQFNTDRISLYQDNTGRVTL 75
Query: 62 ISHVNISHVTVEDGGEYACVAENRAG--TCE 90
+ I V +D G Y A N AG TC
Sbjct: 76 L----IKDVNKKDAGWYTVSAVNEAGVTTCN 102
>pdb|2V9T|A Chain A, Complex Between The Second Lrr Domain Of Slit2 And The
First Ig Domain From Robo1
Length = 117
Score = 31.6 bits (70), Expect = 0.58, Method: Compositional matrix adjust.
Identities = 24/88 (27%), Positives = 34/88 (38%), Gaps = 2/88 (2%)
Query: 2 PPILTYSFIEQTLQPGPAVSLKCIASGNPTPDIGWTLDGFELPTNNRFVIGQFVSGHGDV 61
PP + + + G +L C A G PTP I W G + T+ +
Sbjct: 9 PPRIVEHPSDLIVSKGEPATLNCKAEGRPTPTIEWYKGGERVETDKDDPRSHRMLLPSGS 68
Query: 62 ISHVNISH--VTVEDGGEYACVAENRAG 87
+ + I H + D G Y CVA N G
Sbjct: 69 LFFLRIVHGRKSRPDEGVYVCVARNYLG 96
>pdb|4HWN|A Chain A, Crystal Structure Of The Second Ig-C2 Domain Of Human
Fc-Receptor Like A (Fcrla), Isoform 9 [nysgrc-005836]
Length = 108
Score = 31.6 bits (70), Expect = 0.59, Method: Compositional matrix adjust.
Identities = 16/53 (30%), Positives = 26/53 (49%)
Query: 100 LIAWFKDGRQIPGRTSSTSLVINPVGREDRGIYQCIARRSDGDVAQGSAELQL 152
L +++KDGR + R S+ I + G Y C A D V + S +L++
Sbjct: 43 LFSFYKDGRIVQSRGLSSEFQIPTASEDHSGSYWCEAATEDNQVWKQSPQLEI 95
>pdb|3BFO|A Chain A, Crystal Structure Of Ig-Like C2-Type 2 Domain Of The
Human Mucosa-Associated Lymphoid Tissue Lymphoma
Translocation Protein 1
pdb|3BFO|B Chain B, Crystal Structure Of Ig-Like C2-Type 2 Domain Of The
Human Mucosa-Associated Lymphoid Tissue Lymphoma
Translocation Protein 1
pdb|3BFO|C Chain C, Crystal Structure Of Ig-Like C2-Type 2 Domain Of The
Human Mucosa-Associated Lymphoid Tissue Lymphoma
Translocation Protein 1
pdb|3BFO|D Chain D, Crystal Structure Of Ig-Like C2-Type 2 Domain Of The
Human Mucosa-Associated Lymphoid Tissue Lymphoma
Translocation Protein 1
Length = 91
Score = 31.2 bits (69), Expect = 0.66, Method: Composition-based stats.
Identities = 14/33 (42%), Positives = 19/33 (57%), Gaps = 2/33 (6%)
Query: 12 QTLQPGPAVSLKCIASGNPTPDIGWTLDGFELP 44
Q L PG + L+C+A G+P P W + ELP
Sbjct: 13 QKLMPGSTLVLQCVAVGSPIPHYQWFKN--ELP 43
>pdb|2DL9|A Chain A, Solution Structure Of The Ig-Like Domain Of Human Leucine-
Rich Repeat-Containing Protein 4
Length = 103
Score = 31.2 bits (69), Expect = 0.75, Method: Compositional matrix adjust.
Identities = 15/37 (40%), Positives = 19/37 (51%), Gaps = 3/37 (8%)
Query: 65 VNISHVTVEDGGEYACVAENRAGTCEITPY---DSGP 98
+N SHV + D G Y C+ N AG + Y SGP
Sbjct: 64 LNFSHVLLSDTGVYTCMVTNVAGNSNASAYLNVSSGP 100
>pdb|2C0K|A Chain A, The Structure Of Hemoglobin From The Botfly Gasterophilus
Intestinalis
pdb|2C0K|B Chain B, The Structure Of Hemoglobin From The Botfly Gasterophilus
Intestinalis
Length = 151
Score = 30.8 bits (68), Expect = 0.79, Method: Compositional matrix adjust.
Identities = 20/66 (30%), Positives = 32/66 (48%), Gaps = 9/66 (13%)
Query: 170 EGLSIKCPVAGYPIEEVHWEKVPPKIESF----AFPFDGLPEGAR-----TRVICGVTHG 220
E ++ K AG + + +++K P + F PFD LPE AR TR++ V G
Sbjct: 14 EVVAAKMTEAGVEMLKRYFKKYPHNLNHFPWFKEIPFDDLPENARFKTHGTRILRQVDEG 73
Query: 221 DPPLTI 226
L++
Sbjct: 74 VKALSV 79
>pdb|1IRA|Y Chain Y, Complex Of The Interleukin-1 Receptor With The
Interleukin-1 Receptor Antagonist (il1ra)
pdb|4GAF|B Chain B, Crystal Structure Of Ebi-005, A Chimera Of Human Il-1beta
And Il-1ra, Bound To Human Interleukin-1 Receptor Type 1
Length = 319
Score = 30.8 bits (68), Expect = 0.96, Method: Compositional matrix adjust.
Identities = 46/188 (24%), Positives = 59/188 (31%), Gaps = 44/188 (23%)
Query: 101 IAWFKDGRQIPGRTSSTS--------LVINPVGREDRGIYQCIARRSDGDVAQGSAELQL 152
I W+KD + P T S L P ED G Y C+ R S S L++
Sbjct: 38 ITWYKDDSKTPVSTEQASRIHQHKEKLWFVPAKVEDSGHYYCVVRNS-------SYCLRI 90
Query: 153 G-GLPYVRLIPKVTAIDGEGLSIKCPVAGYPIEEVHWEKVPPKIESFAFPFDGLPEGART 211
+V P + K PVAG V P +E F + LP+
Sbjct: 91 KISAKFVENEPNLCYNAQAIFKQKLPVAG------DGGLVCPYMEFFKNENNELPK---- 140
Query: 212 RVICGVTHGDPPLTIRWLKDGKPLSPRFPXXXXXXXXXXXXXXXXXXXAAHSGEYTCVAS 271
++W KD KPL H G YTC AS
Sbjct: 141 --------------LQWYKDCKPLL----LDNIHFSGVKDRLIVMNVAEKHRGNYTCHAS 182
Query: 272 NTAAQARY 279
T +Y
Sbjct: 183 YTYLGKQY 190
>pdb|2CPC|A Chain A, Solution Structure Of Rsgi Ruh-030, An Ig Like Domain
From Human Cdna
Length = 113
Score = 30.8 bits (68), Expect = 1.00, Method: Compositional matrix adjust.
Identities = 15/64 (23%), Positives = 31/64 (48%), Gaps = 5/64 (7%)
Query: 29 NPTPDIGWTLDGFELPTNNRFVIGQFVSGHGDVISHVNISHVTVEDGGEYACVAENRAGT 88
P ++ WT DG E+ + ++ + D + + + V +ED GEY C ++ + +
Sbjct: 39 RPWAEVRWTKDGEEVVESPALLLQK-----EDTVRRLVLPAVQLEDSGEYLCEIDDESAS 93
Query: 89 CEIT 92
+T
Sbjct: 94 FTVT 97
>pdb|2BUP|A Chain A, T13g Mutant Of The Atpase Fragment Of Bovine Hsc70
Length = 381
Score = 30.4 bits (67), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 24/80 (30%), Positives = 35/80 (43%), Gaps = 6/80 (7%)
Query: 70 VTVEDGGEYACVAENRAGTCEITPYDSG----PYLIAWFKDGRQIPGRTSSTSLVINPVG 125
V ++ GG Y+CV + G EI D G P +A F D ++ G + + +NP
Sbjct: 7 VGIDLGGTYSCVGVFQHGKVEIIANDQGNRTTPSYVA-FTDTERLIGDAAKNQVAMNPTN 65
Query: 126 REDRGIYQCIARRSDGDVAQ 145
+ I RR D V Q
Sbjct: 66 TV-FDAKRLIGRRFDDAVVQ 84
>pdb|1G0Y|R Chain R, Il-1 Receptor Type 1 Complexed With Antagonist Peptide
Af10847
Length = 312
Score = 30.4 bits (67), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 46/188 (24%), Positives = 59/188 (31%), Gaps = 44/188 (23%)
Query: 101 IAWFKDGRQIPGRTSSTS--------LVINPVGREDRGIYQCIARRSDGDVAQGSAELQL 152
I W+KD + P T S L P ED G Y C+ R S S L++
Sbjct: 35 ITWYKDDSKTPVSTEQASRIHQHKEKLWFVPAKVEDSGHYYCVVRNS-------SYCLRI 87
Query: 153 G-GLPYVRLIPKVTAIDGEGLSIKCPVAGYPIEEVHWEKVPPKIESFAFPFDGLPEGART 211
+V P + K PVAG V P +E F + LP+
Sbjct: 88 KISAKFVENEPNLCYNAQAIFKQKLPVAG------DGGLVCPYMEFFKNENNELPK---- 137
Query: 212 RVICGVTHGDPPLTIRWLKDGKPLSPRFPXXXXXXXXXXXXXXXXXXXAAHSGEYTCVAS 271
++W KD KPL H G YTC AS
Sbjct: 138 --------------LQWYKDCKPLL----LDNIHFSGVKDRLIVMNVAEKHRGNYTCHAS 179
Query: 272 NTAAQARY 279
T +Y
Sbjct: 180 YTYLGKQY 187
>pdb|4DEP|B Chain B, Structure Of The Il-1b Signaling Complex
pdb|4DEP|E Chain E, Structure Of The Il-1b Signaling Complex
Length = 321
Score = 30.4 bits (67), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 46/188 (24%), Positives = 59/188 (31%), Gaps = 44/188 (23%)
Query: 101 IAWFKDGRQIPGRTSSTS--------LVINPVGREDRGIYQCIARRSDGDVAQGSAELQL 152
I W+KD + P T S L P ED G Y C+ R S S L++
Sbjct: 40 ITWYKDDSKTPVSTEQASRIHQHKEKLWFVPAKVEDSGHYYCVVRNS-------SYCLRI 92
Query: 153 G-GLPYVRLIPKVTAIDGEGLSIKCPVAGYPIEEVHWEKVPPKIESFAFPFDGLPEGART 211
+V P + K PVAG V P +E F + LP+
Sbjct: 93 KISAKFVENEPNLCYNAQAIFKQKLPVAG------DGGLVCPYMEFFKNENNELPK---- 142
Query: 212 RVICGVTHGDPPLTIRWLKDGKPLSPRFPXXXXXXXXXXXXXXXXXXXAAHSGEYTCVAS 271
++W KD KPL H G YTC AS
Sbjct: 143 --------------LQWYKDCKPLL----LDNIHFSGVKDRLIVMNVAEKHRGNYTCHAS 184
Query: 272 NTAAQARY 279
T +Y
Sbjct: 185 YTYLGKQY 192
>pdb|1ITB|B Chain B, Type-1 Interleukin-1 Receptor Complexed With Interleukin-1
Beta
Length = 315
Score = 30.4 bits (67), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 46/188 (24%), Positives = 59/188 (31%), Gaps = 44/188 (23%)
Query: 101 IAWFKDGRQIPGRTSSTS--------LVINPVGREDRGIYQCIARRSDGDVAQGSAELQL 152
I W+KD + P T S L P ED G Y C+ R S S L++
Sbjct: 38 ITWYKDDSKTPVSTEQASRIHQHKEKLWFVPAKVEDSGHYYCVVRNS-------SYCLRI 90
Query: 153 G-GLPYVRLIPKVTAIDGEGLSIKCPVAGYPIEEVHWEKVPPKIESFAFPFDGLPEGART 211
+V P + K PVAG V P +E F + LP+
Sbjct: 91 KISAKFVENEPNLCYNAQAIFKQKLPVAG------DGGLVCPYMEFFKNENNELPK---- 140
Query: 212 RVICGVTHGDPPLTIRWLKDGKPLSPRFPXXXXXXXXXXXXXXXXXXXAAHSGEYTCVAS 271
++W KD KPL H G YTC AS
Sbjct: 141 --------------LQWYKDCKPLL----LDNIHFSGVKDRLIVMNVAEKHRGNYTCHAS 182
Query: 272 NTAAQARY 279
T +Y
Sbjct: 183 YTYLGKQY 190
>pdb|3ZYI|A Chain A, Netring2 In Complex With Ngl2
Length = 452
Score = 30.4 bits (67), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 12/30 (40%), Positives = 16/30 (53%)
Query: 65 VNISHVTVEDGGEYACVAENRAGTCEITPY 94
+N SHV + D G Y C+ N AG + Y
Sbjct: 409 LNFSHVLLSDTGVYTCMVTNVAGNSNASAY 438
>pdb|1SBS|H Chain H, Crystal Structure Of An Anti-Hcg Fab
Length = 222
Score = 30.4 bits (67), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 24/88 (27%), Positives = 38/88 (43%), Gaps = 22/88 (25%)
Query: 14 LQPGPAVSLKCIASG-------------NPTPDIGWTLDGFELPTNN------RFVIGQF 54
+QPG ++ L C+ASG +P + W D L +NN V G+F
Sbjct: 12 VQPGGSMKLSCVASGFTFSNYWMNWVRQSPEKGLEWVAD-IRLKSNNYATLYAESVKGRF 70
Query: 55 VSGHGDVIS--HVNISHVTVEDGGEYAC 80
D S ++ ++++ ED G Y C
Sbjct: 71 TISRDDSKSSVYLQMNNLRAEDTGIYYC 98
>pdb|3RNQ|B Chain B, Crystal Structure Of The Complex Between The Extracellular
Domains Of Mouse Pd-1 Mutant And Pd-L2
Length = 201
Score = 30.4 bits (67), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 12/36 (33%), Positives = 21/36 (58%), Gaps = 1/36 (2%)
Query: 157 YVRLIPKVTAIDGEG-LSIKCPVAGYPIEEVHWEKV 191
Y+R+ ++ + G G + + C GYP+ EV W+ V
Sbjct: 104 YMRIDTRILEVPGTGEVQLTCQARGYPLAEVSWQNV 139
>pdb|3BP5|B Chain B, Crystal Structure Of The Mouse Pd-1 And Pd-L2 Complex
pdb|3BP6|B Chain B, Crystal Structure Of The Mouse Pd-1 Mutant And Pd-L2
Complex
Length = 202
Score = 30.4 bits (67), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 12/36 (33%), Positives = 21/36 (58%), Gaps = 1/36 (2%)
Query: 157 YVRLIPKVTAIDGEG-LSIKCPVAGYPIEEVHWEKV 191
Y+R+ ++ + G G + + C GYP+ EV W+ V
Sbjct: 105 YMRIDTRILEVPGTGEVQLTCQARGYPLAEVSWQNV 140
>pdb|2WV3|A Chain A, Neuroplastin-55 Binds To And Signals Through The
Fibroblast Growth Factor Receptor
Length = 190
Score = 30.4 bits (67), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 22/85 (25%), Positives = 39/85 (45%), Gaps = 7/85 (8%)
Query: 12 QTLQPGPAVSLKCIASGNPTPDIGWTLDG---FELPTNNRFVIGQFVSGHGDVISHVNIS 68
+ G + C + G P P+ W FE +N+ G+F + + + +NI
Sbjct: 102 ENKNEGQDAMMYCKSVGYPHPEWMWRKKENGVFEEISNSS---GRFFIINKENYTELNIV 158
Query: 69 HVTV-EDGGEYACVAENRAGTCEIT 92
++ + ED GEY C A N G+ ++
Sbjct: 159 NLQITEDPGEYECNATNSIGSASVS 183
Score = 28.9 bits (63), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 26/112 (23%), Positives = 38/112 (33%), Gaps = 18/112 (16%)
Query: 89 CEITPYDSGPYLIAWFKDGRQIPG---RTSSTSLVINPVGREDRGIYQCIARRSDGDVAQ 145
C +T W K+G ++ S+ IN ED G Y C+ A
Sbjct: 25 CNLTSSSHTLMYSYWTKNGVELTATRKNASNMEYRINKPRAEDSGEYHCVYHFVSAPKAN 84
Query: 146 GSAELQLGGLPYVRLIPKVT-------AIDGEGLSIKCPVAGYPIEEVHWEK 190
+ E V+ P +T +G+ + C GYP E W K
Sbjct: 85 ATIE--------VKAAPDITGHKRSENKNEGQDAMMYCKSVGYPHPEWMWRK 128
>pdb|2XY2|A Chain A, Crystal Structure Of Ncam2 Ig1-2
Length = 189
Score = 30.4 bits (67), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 19/73 (26%), Positives = 31/73 (42%), Gaps = 1/73 (1%)
Query: 117 TSLVINPVGREDRGIYQCIARRSDGDVAQGSAELQL-GGLPYVRLIPKVTAIDGEGLSIK 175
+ L I ED GIY+C A + G + + L++ L + ++ GE +
Sbjct: 58 SRLTIYNANIEDAGIYRCQATDAKGQTQEATVVLEIYQKLTFREVVSPQEFKQGEDAEVV 117
Query: 176 CPVAGYPIEEVHW 188
C V+ P V W
Sbjct: 118 CRVSSSPAPAVSW 130
Score = 27.3 bits (59), Expect = 9.0, Method: Compositional matrix adjust.
Identities = 21/83 (25%), Positives = 34/83 (40%), Gaps = 5/83 (6%)
Query: 5 LTYSFIEQTLQPGPAVSLKCIASGNPTPDIGWTLDGFELPTNNRFVIGQFVSGHGDVISH 64
+T S + L G + C A G P + G ++ + R V+ + V S
Sbjct: 5 VTISLSKVELSVGESKFFTCTAIGEPESIDWYNPQGEKIISTQRVVVQK-----EGVRSR 59
Query: 65 VNISHVTVEDGGEYACVAENRAG 87
+ I + +ED G Y C A + G
Sbjct: 60 LTIYNANIEDAGIYRCQATDAKG 82
>pdb|1H3T|A Chain A, Crystal Structure Of The Human Igg1 Fc-Fragment,Glycoform
(Mn2f)2
pdb|1H3T|B Chain B, Crystal Structure Of The Human Igg1 Fc-Fragment,Glycoform
(Mn2f)2
pdb|1H3U|A Chain A, Crystal Structure Of The Human Igg1 Fc-Fragment,Glycoform
(M3n2f)2
pdb|1H3U|B Chain B, Crystal Structure Of The Human Igg1 Fc-Fragment,Glycoform
(M3n2f)2
pdb|1H3V|A Chain A, Crystal Structure Of The Human Igg1 Fc-Fragment,Glycoform
(G2f)2,Sg P212121
pdb|1H3V|B Chain B, Crystal Structure Of The Human Igg1 Fc-Fragment,Glycoform
(G2f)2,Sg P212121
pdb|1H3W|M Chain M, Crystal Structure Of The Human Igg1 Fc-Fragment,Glycoform
(G2f)2, Sg C2221
pdb|1H3Y|A Chain A, Crystal Structure Of A Human Igg1 Fc-Fragment,High Salt
Condition
pdb|1H3Y|B Chain B, Crystal Structure Of A Human Igg1 Fc-Fragment,High Salt
Condition
pdb|1H3X|A Chain A, Crystal Structure Of The Human Igg1 Fc-Fragment,Glycoform
(G0f)2
pdb|1H3X|B Chain B, Crystal Structure Of The Human Igg1 Fc-Fragment,Glycoform
(G0f)2
Length = 223
Score = 30.0 bits (66), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 15/62 (24%), Positives = 26/62 (41%)
Query: 25 IASGNPTPDIGWTLDGFELPTNNRFVIGQFVSGHGDVISHVNISHVTVEDGGEYACVAEN 84
++ +P W +DG ++ Q + V+S + + H DG EY C N
Sbjct: 42 VSHEDPQVKFNWYVDGVQVHNAKTKPREQQYNSTYRVVSVLTVLHQNWLDGKEYKCKVSN 101
Query: 85 RA 86
+A
Sbjct: 102 KA 103
>pdb|1E4K|A Chain A, Crystal Structure Of Soluble Human Igg1 Fc
Fragment-Fc-Gamma Receptor Iii Complex
pdb|1E4K|B Chain B, Crystal Structure Of Soluble Human Igg1 Fc
Fragment-Fc-Gamma Receptor Iii Complex
Length = 225
Score = 30.0 bits (66), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 15/62 (24%), Positives = 26/62 (41%)
Query: 25 IASGNPTPDIGWTLDGFELPTNNRFVIGQFVSGHGDVISHVNISHVTVEDGGEYACVAEN 84
++ +P W +DG ++ Q + V+S + + H DG EY C N
Sbjct: 44 VSHEDPQVKFNWYVDGVQVHNAKTKPREQQYNSTYRVVSVLTVLHQNWLDGKEYKCKVSN 103
Query: 85 RA 86
+A
Sbjct: 104 KA 105
>pdb|4F9P|D Chain D, Crystal Structure Of The Human Btn3a1 Ectodomain In
Complex With The 103.2 Single Chain Antibody
pdb|4F9P|C Chain C, Crystal Structure Of The Human Btn3a1 Ectodomain In
Complex With The 103.2 Single Chain Antibody
Length = 254
Score = 30.0 bits (66), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 25/90 (27%), Positives = 40/90 (44%), Gaps = 9/90 (10%)
Query: 4 ILTYSFIEQTLQPGPAVSLKCIASGNPTPDIGWTLDG--------FELPTNNRFVIGQFV 55
+LT S + ++ PG +VSL C AS + + ++ W + + + F I
Sbjct: 139 VLTQSPVTLSVTPGDSVSLSCRASQSISNNLHWYRQKSHESPRLLIKYASQSIFGIPSRF 198
Query: 56 SGHGDVISH-VNISHVTVEDGGEYACVAEN 84
SG G ++I+ V ED G Y C N
Sbjct: 199 SGSGSGTEFTLSINSVETEDFGIYFCQQSN 228
>pdb|1FC1|A Chain A, Crystallographic Refinement And Atomic Models Of A Human
Fc Fragment And Its Complex With Fragment B Of Protein A
From Staphylococcus Aureus At 2.9-And 2.8-Angstroms
Resolution
pdb|1FC1|B Chain B, Crystallographic Refinement And Atomic Models Of A Human
Fc Fragment And Its Complex With Fragment B Of Protein A
From Staphylococcus Aureus At 2.9-And 2.8-Angstroms
Resolution
pdb|1FC2|D Chain D, Crystallographic Refinement And Atomic Models Of A Human
Fc Fragment And Its Complex With Fragment B Of Protein A
From Staphylococcus Aureus At 2.9-and 2.8-angstroms
Resolution
Length = 224
Score = 30.0 bits (66), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 15/62 (24%), Positives = 26/62 (41%)
Query: 25 IASGNPTPDIGWTLDGFELPTNNRFVIGQFVSGHGDVISHVNISHVTVEDGGEYACVAEN 84
++ +P W +DG ++ Q + V+S + + H DG EY C N
Sbjct: 44 VSHEDPQVKFNWYVDGVQVHNAKTKPREQQYNSTYRVVSVLTVLHQNWLDGKEYKCKVSN 103
Query: 85 RA 86
+A
Sbjct: 104 KA 105
>pdb|1FCC|A Chain A, Crystal Structure Of The C2 Fragment Of Streptococcal
Protein G In Complex With The Fc Domain Of Human Igg
pdb|1FCC|B Chain B, Crystal Structure Of The C2 Fragment Of Streptococcal
Protein G In Complex With The Fc Domain Of Human Igg
Length = 206
Score = 30.0 bits (66), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 15/62 (24%), Positives = 26/62 (41%)
Query: 25 IASGNPTPDIGWTLDGFELPTNNRFVIGQFVSGHGDVISHVNISHVTVEDGGEYACVAEN 84
++ +P W +DG ++ Q + V+S + + H DG EY C N
Sbjct: 29 VSHEDPQVKFNWYVDGVQVHNAKTKPREQQYNSTYRVVSVLTVLHQNWLDGKEYKCKVSN 88
Query: 85 RA 86
+A
Sbjct: 89 KA 90
>pdb|1F97|A Chain A, Soluble Part Of The Junction Adhesion Molecule From Mouse
Length = 212
Score = 30.0 bits (66), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 45/200 (22%), Positives = 66/200 (33%), Gaps = 69/200 (34%)
Query: 19 AVSLKCIASGNPTPDIGWTLDGFELPTNNRFVI--GQFVSGHGDVI----SHVNISHVTV 72
++ L C SG +P + W F + V Q + + D + S + S VT
Sbjct: 18 SIKLTCTYSGFSSPRVEWK---FVQGSTTALVCYNSQITAPYADRVTFSSSGITFSSVTR 74
Query: 73 EDGGEYACVAENRAG-----------------------------------TCEITPYD-S 96
+D GEY C+ G TC + +D S
Sbjct: 75 KDNGEYTCMVSEEGGQNYGEVSIHLTVLVPPSKPTISVPSSVTIGNRAVLTC--SEHDGS 132
Query: 97 GPYLIAWFKDGRQIPGRTS----------------STSLVINPVGREDRGIYQCIARRSD 140
P +WFKDG + + S L+ +PV D G Y C A+
Sbjct: 133 PPSEYSWFKDGISMLTADAKKTRAFMNSSFTIDPKSGDLIFDPVTAFDSGEYYCQAQNGY 192
Query: 141 GDVAQGSA------ELQLGG 154
G + A EL +GG
Sbjct: 193 GTAMRSEAAHMDAVELNVGG 212
Score = 27.7 bits (60), Expect = 6.8, Method: Compositional matrix adjust.
Identities = 26/118 (22%), Positives = 39/118 (33%), Gaps = 37/118 (31%)
Query: 115 SSTSLVINPVGREDRGIYQCIARRSDGDVAQGSAELQLGGLPYVRLIPKVTAIDGEGLSI 174
SS+ + + V R+D G Y C+ + GG Y + +T +
Sbjct: 63 SSSGITFSSVTRKDNGEYTCMVS-------------EEGGQNYGEVSIHLTVL------- 102
Query: 175 KCPVAGYPIEEVHWEKVPPKIESFAFPFDGLPEGARTRVICGVTHGDPPLTIRWLKDG 232
VPP + + P + G R + C G PP W KDG
Sbjct: 103 ----------------VPPSKPTISVP-SSVTIGNRAVLTCSEHDGSPPSEYSWFKDG 143
>pdb|1FRT|C Chain C, Crystal Structure Of The Complex Of Rat Neonatal Fc
Receptor With Fc
Length = 205
Score = 30.0 bits (66), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 15/62 (24%), Positives = 26/62 (41%)
Query: 25 IASGNPTPDIGWTLDGFELPTNNRFVIGQFVSGHGDVISHVNISHVTVEDGGEYACVAEN 84
++ +P W +DG ++ Q + V+S + + H DG EY C N
Sbjct: 28 VSHEDPQVKFNWYVDGVQVHNAKTKPREQQYNSTYRVVSVLTVLHQNWLDGKEYKCKVSN 87
Query: 85 RA 86
+A
Sbjct: 88 KA 89
>pdb|3RY6|A Chain A, Complex Of Fcgammariia (Cd32) And The Fc Of Human Igg1
pdb|3RY6|B Chain B, Complex Of Fcgammariia (Cd32) And The Fc Of Human Igg1
Length = 214
Score = 30.0 bits (66), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 15/62 (24%), Positives = 26/62 (41%)
Query: 25 IASGNPTPDIGWTLDGFELPTNNRFVIGQFVSGHGDVISHVNISHVTVEDGGEYACVAEN 84
++ +P W +DG ++ Q + V+S + + H DG EY C N
Sbjct: 36 VSHEDPQVKFNWYVDGVQVHNAKTKPREQQYNSTYRVVSVLTVLHQNWLDGKEYKCKVSN 95
Query: 85 RA 86
+A
Sbjct: 96 KA 97
>pdb|1XFP|A Chain A, Crystal Structure Of The Cdr2 Germline Reversion Mutant Of
Cab-lys3 In Complex With Hen Egg White Lysozyme
Length = 142
Score = 29.6 bits (65), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 14/38 (36%), Positives = 18/38 (47%), Gaps = 3/38 (7%)
Query: 88 TCEITPYDSGPYLIAWFKDGRQIPGRTSSTSLVINPVG 125
+C + Y GPY + WF RQ PG+ IN G
Sbjct: 21 SCAASGYTIGPYCMGWF---RQAPGKEREGVAAINSGG 55
>pdb|2EDF|A Chain A, Solution Structure Of The Second Ig-Like
Domain(2826-2915) From Human Obscurin
Length = 103
Score = 29.6 bits (65), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 21/90 (23%), Positives = 38/90 (42%), Gaps = 6/90 (6%)
Query: 2 PPILTYSFIEQTLQPGPAVSLKCIASGNPTPDIGWTLDGFELPTNNRFVIGQFVSGHGDV 61
P + +Q + PG V L+C S TP + W D + + ++ + G
Sbjct: 8 PAAIIKPLEDQWVAPGEDVELRCELSRAGTP-VHWLKDRKAIRKSQKYDV--VCEG---T 61
Query: 62 ISHVNISHVTVEDGGEYACVAENRAGTCEI 91
++ + I +++D GEY C E T +
Sbjct: 62 MAMLVIRGASLKDAGEYTCEVEASKSTASL 91
>pdb|1RIH|L Chain L, Crystal Structure Of Fab 14f7, A Unique Anti-Tumor
Antibody Specific For N-Glycolyl Gm3
Length = 214
Score = 29.6 bits (65), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 34/115 (29%), Positives = 51/115 (44%), Gaps = 24/115 (20%)
Query: 4 ILTYSFIEQTLQPGPAVSLKCIASGNPTPDIGWTLDGFELPTNN--RFVI---GQFVSGH 58
+LT S ++ PG +VS C AS + + ++ W ++ T+ R +I Q +SG
Sbjct: 3 VLTQSPATLSVTPGDSVSFSCRASQSISNNLHW----YQQRTHESPRLLIKYASQSISGI 58
Query: 59 GDVIS--------HVNISHVTVEDGGEYACVAENR------AGT-CEITPYDSGP 98
S ++IS V ED G Y C NR AGT E+ D+ P
Sbjct: 59 PSRFSGSGSGTDFTLSISSVETEDFGMYFCQQSNRWPLTFGAGTKLELKRADAAP 113
>pdb|1KOA|A Chain A, Twitchin Kinase Fragment (C.Elegans), Autoregulated
Protein Kinase And Immunoglobulin Domains
Length = 491
Score = 29.6 bits (65), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 19/74 (25%), Positives = 33/74 (44%), Gaps = 5/74 (6%)
Query: 17 GPAVSLKCIASGNPTPDIGWTLDGFELPTNNRFVIGQFVSGHGDVISHVNISHVTVEDGG 76
G + + C + P + W D EL + +++ + +G + I+ V +D G
Sbjct: 391 GQSANFYCRVIASSPPVVTWHKDDRELKQSVKYMKRYNGNDYG-----LTINRVKGDDKG 445
Query: 77 EYACVAENRAGTCE 90
EY A+N GT E
Sbjct: 446 EYTVRAKNSYGTKE 459
>pdb|1WWC|A Chain A, Nt3 Binding Domain Of Human Trkc Receptor
Length = 118
Score = 29.6 bits (65), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 13/30 (43%), Positives = 17/30 (56%)
Query: 206 PEGARTRVICGVTHGDPPLTIRWLKDGKPL 235
PE I V G+PP T+ WL +G+PL
Sbjct: 17 PELRLEHCIEFVVRGNPPPTLHWLHNGQPL 46
>pdb|1HCF|X Chain X, Crystal Structure Of Trkb-D5 Bound To Neurotrophin-45
pdb|1HCF|Y Chain Y, Crystal Structure Of Trkb-D5 Bound To Neurotrophin-45
Length = 101
Score = 29.6 bits (65), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 16/63 (25%), Positives = 28/63 (44%)
Query: 28 GNPTPDIGWTLDGFELPTNNRFVIGQFVSGHGDVISHVNISHVTVEDGGEYACVAENRAG 87
GNP P + W +G L + V+ H + + + + T + G+Y +A+N G
Sbjct: 27 GNPKPALQWFYNGAILNESKYICTKIHVTNHTEYHGCLQLDNPTHMNNGDYTLIAKNEYG 86
Query: 88 TCE 90
E
Sbjct: 87 KDE 89
>pdb|3V0V|H Chain H, Fab Wn1 222-5 Unliganded
pdb|3V0V|A Chain A, Fab Wn1 222-5 Unliganded
Length = 220
Score = 29.6 bits (65), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 26/97 (26%), Positives = 38/97 (39%), Gaps = 20/97 (20%)
Query: 14 LQPGPAVSLKCIASGNPTPD--IGWTLDG-------FELPTNNR---------FVIGQFV 55
+QPG ++SL C ASG D + W L N R V G+F
Sbjct: 12 VQPGGSLSLSCAASGFTFSDYYMTWVRQAPGKAPEWLALIRNKRNGDTAEYSASVKGRFT 71
Query: 56 --SGHGDVISHVNISHVTVEDGGEYACVAENRAGTCE 90
+ I H+ ++ + ED Y CV + R T +
Sbjct: 72 ISRDYSRSILHLQMNALRTEDSATYYCVRQGRGYTLD 108
>pdb|2ID5|A Chain A, Crystal Structure Of The Lingo-1 Ectodomain
pdb|2ID5|B Chain B, Crystal Structure Of The Lingo-1 Ectodomain
pdb|2ID5|C Chain C, Crystal Structure Of The Lingo-1 Ectodomain
pdb|2ID5|D Chain D, Crystal Structure Of The Lingo-1 Ectodomain
Length = 477
Score = 29.6 bits (65), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 23/75 (30%), Positives = 30/75 (40%), Gaps = 11/75 (14%)
Query: 17 GPAVSLKCIASGNPTPDIGWTLDGFEL---PTNNRFVIGQFVSGHGDVISHVNISHVTVE 73
G V C A G+P P I W L +N R + F G +V + V+
Sbjct: 400 GHTVQFVCRADGDPPPAILWLSPRKHLVSAKSNGRLTV--FPDGTLEV------RYAQVQ 451
Query: 74 DGGEYACVAENRAGT 88
D G Y C+A N G
Sbjct: 452 DNGTYLCIAANAGGN 466
>pdb|3V0W|H Chain H, Crystal Structure Of Fab Wn1 222-5 In Complex With Lps
Length = 219
Score = 29.6 bits (65), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 26/97 (26%), Positives = 38/97 (39%), Gaps = 20/97 (20%)
Query: 14 LQPGPAVSLKCIASGNPTPD--IGWTLDG-------FELPTNNR---------FVIGQFV 55
+QPG ++SL C ASG D + W L N R V G+F
Sbjct: 12 VQPGGSLSLSCAASGFTFSDYYMTWVRQAPGKAPEWLALIRNKRNGDTAEYSASVKGRFT 71
Query: 56 --SGHGDVISHVNISHVTVEDGGEYACVAENRAGTCE 90
+ I H+ ++ + ED Y CV + R T +
Sbjct: 72 ISRDYSRSILHLQMNALRTEDSATYYCVRQGRGYTLD 108
>pdb|1WWB|X Chain X, Ligand Binding Domain Of Human Trkb Receptor
Length = 103
Score = 29.6 bits (65), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 16/65 (24%), Positives = 28/65 (43%)
Query: 26 ASGNPTPDIGWTLDGFELPTNNRFVIGQFVSGHGDVISHVNISHVTVEDGGEYACVAENR 85
GNP P + W +G L + V+ H + + + + T + G+Y +A+N
Sbjct: 25 VKGNPKPALQWFYNGAILNESKYICTKIHVTNHTEYHGCLQLDNPTHMNNGDYTLIAKNE 84
Query: 86 AGTCE 90
G E
Sbjct: 85 YGKDE 89
>pdb|3UTO|A Chain A, Twitchin Kinase Region From C.Elegans
(Fn31-Nl-Kin-Crd-Ig26)
pdb|3UTO|B Chain B, Twitchin Kinase Region From C.Elegans
(Fn31-Nl-Kin-Crd-Ig26)
Length = 573
Score = 29.6 bits (65), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 19/74 (25%), Positives = 33/74 (44%), Gaps = 5/74 (6%)
Query: 17 GPAVSLKCIASGNPTPDIGWTLDGFELPTNNRFVIGQFVSGHGDVISHVNISHVTVEDGG 76
G + + C + P + W D EL + +++ + +G + I+ V +D G
Sbjct: 497 GQSANFYCRVIASSPPVVTWHKDDRELKQSVKYMKRYNGNDYG-----LTINRVKGDDKG 551
Query: 77 EYACVAENRAGTCE 90
EY A+N GT E
Sbjct: 552 EYTVRAKNSYGTKE 565
>pdb|2RCJ|C Chain C, Solution Structure Of Human Immunoglobulin M
pdb|2RCJ|D Chain D, Solution Structure Of Human Immunoglobulin M
pdb|2RCJ|G Chain G, Solution Structure Of Human Immunoglobulin M
pdb|2RCJ|H Chain H, Solution Structure Of Human Immunoglobulin M
pdb|2RCJ|K Chain K, Solution Structure Of Human Immunoglobulin M
pdb|2RCJ|L Chain L, Solution Structure Of Human Immunoglobulin M
pdb|2RCJ|O Chain O, Solution Structure Of Human Immunoglobulin M
pdb|2RCJ|P Chain P, Solution Structure Of Human Immunoglobulin M
pdb|2RCJ|S Chain S, Solution Structure Of Human Immunoglobulin M
pdb|2RCJ|T Chain T, Solution Structure Of Human Immunoglobulin M
Length = 523
Score = 29.3 bits (64), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 15/62 (24%), Positives = 26/62 (41%)
Query: 25 IASGNPTPDIGWTLDGFELPTNNRFVIGQFVSGHGDVISHVNISHVTVEDGGEYACVAEN 84
++ +P W +DG ++ Q + V+S + + H DG EY C N
Sbjct: 346 VSHEDPQVKFNWYVDGVQVHNAKTKPREQQYNSTYRVVSVLTVLHQNWLDGKEYKCKVSN 405
Query: 85 RA 86
+A
Sbjct: 406 KA 407
>pdb|1MCO|H Chain H, Three-Dimensional Structure Of A Human Immunoglobulin With
A Hinge Deletion
Length = 428
Score = 29.3 bits (64), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 15/62 (24%), Positives = 26/62 (41%)
Query: 25 IASGNPTPDIGWTLDGFELPTNNRFVIGQFVSGHGDVISHVNISHVTVEDGGEYACVAEN 84
++ +P W +DG ++ Q + V+S + + H DG EY C N
Sbjct: 251 VSHEDPQVKFNWYVDGVQVHNAKTKPREQQYNSTYRVVSVLTVLHQNWLDGKEYKCKVSN 310
Query: 85 RA 86
+A
Sbjct: 311 KA 312
>pdb|3LDL|A Chain A, Crystal Structure Of Human Grp78 (70kda Heat Shock Protein
5 BIP) Atpase Domain In Complex With Atp
pdb|3LDL|B Chain B, Crystal Structure Of Human Grp78 (70kda Heat Shock Protein
5 BIP) Atpase Domain In Complex With Atp
pdb|3LDN|A Chain A, Crystal Structure Of Human Grp78 (70kda Heat Shock Protein
5 BIP) Atpase Domain In Apo Form
pdb|3LDN|B Chain B, Crystal Structure Of Human Grp78 (70kda Heat Shock Protein
5 BIP) Atpase Domain In Apo Form
pdb|3LDO|A Chain A, Crystal Structure Of Human Grp78 (70kda Heat Shock Protein
5 / Bip) Atpase Domain In Complex With Amppnp
pdb|3LDO|B Chain B, Crystal Structure Of Human Grp78 (70kda Heat Shock Protein
5 / Bip) Atpase Domain In Complex With Amppnp
pdb|3LDP|A Chain A, Crystal Structure Of Human Grp78 (70kda Heat Shock Protein
5 BIP) Atpase Domain In Complex With Small Molecule
Inhibitor
pdb|3LDP|B Chain B, Crystal Structure Of Human Grp78 (70kda Heat Shock Protein
5 BIP) Atpase Domain In Complex With Small Molecule
Inhibitor
Length = 384
Score = 29.3 bits (64), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 17/58 (29%), Positives = 27/58 (46%), Gaps = 4/58 (6%)
Query: 70 VTVEDGGEYACVAENRAGTCEITPYDSG----PYLIAWFKDGRQIPGRTSSTSLVINP 123
V ++ G Y+CV + G EI D G P +A+ +G ++ G + L NP
Sbjct: 8 VGIDLGTTYSCVGVFKNGRVEIIANDQGNRITPSYVAFTPEGERLIGDAAKNQLTSNP 65
>pdb|3IUC|A Chain A, Crystal Structure Of The Human 70kda Heat Shock Protein 5
(BipGRP78) ATPASE DOMAIN IN COMPLEX WITH ADP
pdb|3IUC|C Chain C, Crystal Structure Of The Human 70kda Heat Shock Protein 5
(BipGRP78) ATPASE DOMAIN IN COMPLEX WITH ADP
Length = 408
Score = 29.3 bits (64), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 17/58 (29%), Positives = 27/58 (46%), Gaps = 4/58 (6%)
Query: 70 VTVEDGGEYACVAENRAGTCEITPYDSG----PYLIAWFKDGRQIPGRTSSTSLVINP 123
V ++ G Y+CV + G EI D G P +A+ +G ++ G + L NP
Sbjct: 29 VGIDLGTTYSCVGVFKNGRVEIIANDQGNRITPSYVAFTPEGERLIGDAAKNQLTSNP 86
>pdb|1JTT|A Chain A, Degenerate Interfaces In Antigen-Antibody Complexes
Length = 133
Score = 29.3 bits (64), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 14/38 (36%), Positives = 18/38 (47%), Gaps = 3/38 (7%)
Query: 88 TCEITPYDSGPYLIAWFKDGRQIPGRTSSTSLVINPVG 125
+C + Y GPY + WF RQ PG+ IN G
Sbjct: 21 SCAASGYTIGPYCMGWF---RQAPGKEREGVAAINMGG 55
>pdb|2IG2|H Chain H, Dir Primaerstruktur Des Kristallisierbaren Monoklonalen
Immunoglobulins Igg1 Kol. Ii. Aminosaeuresequenz Der L-
Kette, Lambda-Typ, Subgruppe I (German)
Length = 455
Score = 29.3 bits (64), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 15/62 (24%), Positives = 26/62 (41%)
Query: 25 IASGNPTPDIGWTLDGFELPTNNRFVIGQFVSGHGDVISHVNISHVTVEDGGEYACVAEN 84
++ +P W +DG ++ Q + V+S + + H DG EY C N
Sbjct: 275 VSHEDPQVKFNWYVDGVQVHNAKTKPREQQYNSTYRVVSVLTVLHQNWLDGKEYKCKVSN 334
Query: 85 RA 86
+A
Sbjct: 335 KA 336
>pdb|1MEL|A Chain A, Crystal Structure Of A Camel Single-Domain Vh Antibody
Fragment In Complex With Lysozyme
pdb|1MEL|B Chain B, Crystal Structure Of A Camel Single-Domain Vh Antibody
Fragment In Complex With Lysozyme
pdb|1JTO|A Chain A, Degenerate Interfaces In Antigen-Antibody Complexes
pdb|1JTO|B Chain B, Degenerate Interfaces In Antigen-Antibody Complexes
Length = 148
Score = 28.9 bits (63), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 14/38 (36%), Positives = 18/38 (47%), Gaps = 3/38 (7%)
Query: 88 TCEITPYDSGPYLIAWFKDGRQIPGRTSSTSLVINPVG 125
+C + Y GPY + WF RQ PG+ IN G
Sbjct: 21 SCAASGYTIGPYCMGWF---RQAPGKEREGVAAINMGG 55
>pdb|1KAX|A Chain A, 70kd Heat Shock Cognate Protein Atpase Domain, K71m Mutant
Length = 381
Score = 28.9 bits (63), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 23/80 (28%), Positives = 35/80 (43%), Gaps = 6/80 (7%)
Query: 70 VTVEDGGEYACVAENRAGTCEITPYDSG----PYLIAWFKDGRQIPGRTSSTSLVINPVG 125
V ++ G Y+CV + G EI D G P +A F D ++ G + + +NP
Sbjct: 7 VGIDLGTTYSCVGVFQHGKVEIIANDQGNRTTPSYVA-FTDTERLIGDAAKNQVAMNPTN 65
Query: 126 REDRGIYQCIARRSDGDVAQ 145
+ + I RR D V Q
Sbjct: 66 TVFDAM-RLIGRRFDDAVVQ 84
>pdb|1JTP|A Chain A, Degenerate Interfaces In Antigen-Antibody Complexes
pdb|1JTP|B Chain B, Degenerate Interfaces In Antigen-Antibody Complexes
Length = 148
Score = 28.9 bits (63), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 14/38 (36%), Positives = 18/38 (47%), Gaps = 3/38 (7%)
Query: 88 TCEITPYDSGPYLIAWFKDGRQIPGRTSSTSLVINPVG 125
+C + Y GPY + WF RQ PG+ IN G
Sbjct: 21 SCAASGYTIGPYCMGWF---RQAPGKEREGVAAINMGG 55
>pdb|3IY5|B Chain B, Variable Domains Of The Mouse Fab (1aif) Fitted Into The
Cryoem Reconstruction Of The Virus-Fab 16 Complex
Length = 122
Score = 28.9 bits (63), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 23/89 (25%), Positives = 39/89 (43%), Gaps = 22/89 (24%)
Query: 14 LQPGPAVSLKCIASG-------------NPTPDIGWTLDGFELPTNN------RFVIGQF 54
+QPG ++ L C+ASG +P + W + L ++N V G+F
Sbjct: 12 VQPGGSMKLSCVASGFTFNNYWMSWVRQSPEKGLEWVAE-IRLNSDNFATHYAESVKGKF 70
Query: 55 VSGHGDVIS--HVNISHVTVEDGGEYACV 81
+ D S ++ ++ + ED G Y CV
Sbjct: 71 IISRDDSKSRLYLQMNSLRAEDTGIYYCV 99
>pdb|2CR3|A Chain A, Solution Structure Of The First Ig-Like Domain Of Human
Fibroblast Growth Factor Receptor 1
Length = 99
Score = 28.9 bits (63), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 21/75 (28%), Positives = 32/75 (42%), Gaps = 10/75 (13%)
Query: 14 LQPGPAVSLKCIASGNPTPDIGWTLDGFELPTNNRFVIGQFVSGHGDVISHVNISHVTVE 73
+ PG + L+C + I W DG +L +NR I +G V +
Sbjct: 15 VHPGDLLQLRCRLR-DDVQSINWLRDGVQLAESNRTRI----TGE-----EVEVQDSVPA 64
Query: 74 DGGEYACVAENRAGT 88
D G YACV + +G+
Sbjct: 65 DSGLYACVTSSPSGS 79
>pdb|2OCW|A Chain A, Solution Structure Of Human Secretory Component
pdb|3CHN|S Chain S, Solution Structure Of Human Secretory Iga1
pdb|3CM9|S Chain S, Solution Structure Of Human Siga2
Length = 585
Score = 28.9 bits (63), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 33/121 (27%), Positives = 64/121 (52%), Gaps = 16/121 (13%)
Query: 77 EYACVAEN-RAGTCEITPYDSGPYLIAWFKDGR----QIPGRTSSTSLVINPVGREDRGI 131
+Y C+ E + G C + DS ++ A + +GR + PG + T +++N + D G
Sbjct: 364 KYWCLWEGAQNGRCPLL-VDSEGWVKAQY-EGRLSLLEEPGNGTFT-VILNQLTSRDAGF 420
Query: 132 YQCIARRSDGD-VAQGSAELQL-GGLPYVRLIPKVTAIDGEGLSIKCPVAGYPIEEVHWE 189
Y C+ ++GD + + + E+++ G P +++ VTA+ GE L + C +P + +E
Sbjct: 421 YWCL---TNGDTLWRTTVEIKIIEGEPNLKVPGNVTAVLGETLKVPCH---FPCKFSSYE 474
Query: 190 K 190
K
Sbjct: 475 K 475
>pdb|2R4R|H Chain H, Crystal Structure Of The Human Beta2 Adrenoceptor
pdb|2R4S|H Chain H, Crystal Structure Of The Human Beta2 Adrenoceptor
pdb|3KJ6|H Chain H, Crystal Structure Of A Methylated Beta2 Adrenergic
Receptor- Fab Complex
Length = 217
Score = 28.5 bits (62), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 25/85 (29%), Positives = 34/85 (40%), Gaps = 18/85 (21%)
Query: 15 QPGPAVSLKCIASGNPTPD--IGW----TLDGFE-----------LPTNNRFV-IGQFVS 56
+PG +V L C ASG D I W T GFE + N RF +
Sbjct: 13 RPGASVKLSCKASGYIFTDYYINWVRQRTGQGFEWIGEIYPGSGNIDYNERFKDKATLTA 72
Query: 57 GHGDVISHVNISHVTVEDGGEYACV 81
+++ +S +T ED Y CV
Sbjct: 73 DKSSSTAYMQLSSLTSEDSAVYFCV 97
>pdb|3EJJ|X Chain X, Structure Of M-Csf Bound To The First Three Domains Of Fms
Length = 289
Score = 28.5 bits (62), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 14/48 (29%), Positives = 24/48 (50%), Gaps = 5/48 (10%)
Query: 41 FELPTNNRFVIGQFVSGHGDVISHVNISHVTVEDGGEYACVAENRAGT 88
E+P N+ F + + ++++ V +D G Y+CVA N GT
Sbjct: 228 LEIPLNS-----DFQDNYYKKVRALSLNAVDFQDAGIYSCVASNDVGT 270
>pdb|1KCU|L Chain L, Crystal Structure Of Antibody Pc287
pdb|1KC5|L Chain L, Crystal Structure Of Antibody Pc287 In Complex With Ps1
Peptide
Length = 214
Score = 28.5 bits (62), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 24/86 (27%), Positives = 35/86 (40%), Gaps = 9/86 (10%)
Query: 4 ILTYSFIEQTLQPGPAVSLKCIASGNPTPDIGWTLDGFELP-------TNNRFV-IGQFV 55
+LT S ++ G V+L C AS N + W E P +NR+ +
Sbjct: 3 VLTQSPKSMSMSVGEKVTLSCKASENVDTYVSWYQQRPEQPPALLIYGASNRYTGVPDRF 62
Query: 56 SGHGDVISH-VNISHVTVEDGGEYAC 80
+G G + IS V ED +Y C
Sbjct: 63 TGSGSATDFTLTISSVQAEDLADYHC 88
>pdb|3DBX|A Chain A, Structure Of Chicken Cd1-2 With Bound Fatty Acid
Length = 289
Score = 28.5 bits (62), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 8/23 (34%), Positives = 14/23 (60%)
Query: 89 CEITPYDSGPYLIAWFKDGRQIP 111
C +T + P + W +DGR++P
Sbjct: 209 CRVTSFYPRPIAVTWLRDGREVP 231
>pdb|4EXP|X Chain X, Structure Of Mouse Interleukin-34 In Complex With Mouse
Fms
Length = 283
Score = 28.5 bits (62), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 14/48 (29%), Positives = 24/48 (50%), Gaps = 5/48 (10%)
Query: 41 FELPTNNRFVIGQFVSGHGDVISHVNISHVTVEDGGEYACVAENRAGT 88
E+P N+ F + + ++++ V +D G Y+CVA N GT
Sbjct: 228 LEIPLNS-----DFQDNYYKKVRALSLNAVDFQDAGIYSCVASNDVGT 270
>pdb|3EOY|G Chain G, Structure Of Reovirus Sigma1 In Complex With Its
Receptor Junctional Adhesion Molecule-A
pdb|3EOY|H Chain H, Structure Of Reovirus Sigma1 In Complex With Its
Receptor Junctional Adhesion Molecule-A
pdb|3EOY|I Chain I, Structure Of Reovirus Sigma1 In Complex With Its
Receptor Junctional Adhesion Molecule-A
pdb|3EOY|J Chain J, Structure Of Reovirus Sigma1 In Complex With Its
Receptor Junctional Adhesion Molecule-A
pdb|3EOY|K Chain K, Structure Of Reovirus Sigma1 In Complex With Its
Receptor Junctional Adhesion Molecule-A
pdb|3EOY|L Chain L, Structure Of Reovirus Sigma1 In Complex With Its
Receptor Junctional Adhesion Molecule-A
Length = 104
Score = 28.5 bits (62), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 19/74 (25%), Positives = 29/74 (39%), Gaps = 9/74 (12%)
Query: 20 VSLKCIASGNPTPDIGWTLDGFELPTNNRFVI--GQFVSGHGDVISH----VNISHVTVE 73
V L C SG +P + W D + R V + + + D ++ + VT E
Sbjct: 21 VKLSCAYSGFSSPRVEWKFDQGD---TTRLVCYNNKITASYEDRVTFLPTGITFKSVTRE 77
Query: 74 DGGEYACVAENRAG 87
D G Y C+ G
Sbjct: 78 DTGTYTCMVSEEGG 91
>pdb|1M71|B Chain B, Crystal Structure Of A Monoclonal Fab Specific For
Shigella Flexneri Y Lipopolysaccharide
pdb|1M7D|B Chain B, Crystal Structure Of A Monoclonal Fab Specific For
Shigella Flexneri Y Lipopolysaccharide Complexed With A
Trisaccharide
pdb|1M7I|B Chain B, Crystal Structure Of A Monoclonal Fab Specific For
Shigella Flexneri Y Lipopolysaccharide Complexed With A
Pentasaccharide
Length = 220
Score = 28.5 bits (62), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 23/88 (26%), Positives = 38/88 (43%), Gaps = 22/88 (25%)
Query: 14 LQPGPAVSLKCIASG-------------NPTPDIGWTLDGFELPTNN------RFVIGQF 54
+QPG ++ L C+ASG +P + W + L +NN V G+F
Sbjct: 12 VQPGGSMKLSCVASGFTFSNYWMEWVRQSPEKGLEWVAE-IRLKSNNYATHYAESVKGRF 70
Query: 55 VSGHGDVIS--HVNISHVTVEDGGEYAC 80
D S ++ ++++ ED G Y C
Sbjct: 71 TISRDDSKSSVYLQMNNLRAEDTGIYYC 98
>pdb|4FOM|A Chain A, Crystal Structure Of Human Nectin-3 Full Ectodomain
(D1-D3)
Length = 308
Score = 28.1 bits (61), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 13/34 (38%), Positives = 21/34 (61%), Gaps = 1/34 (2%)
Query: 162 PKVTAIDGEGLSIKCPV-AGYPIEEVHWEKVPPK 194
P VTA+ G+ +S+KC + I ++ WEK+ K
Sbjct: 7 PHVTAVWGKNVSLKCLIEVNETITQISWEKIHGK 40
>pdb|1X9Q|A Chain A, 4m5.3 Anti-Fluorescein Single Chain Antibody Fragment
(Scfv)
Length = 268
Score = 28.1 bits (61), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 23/89 (25%), Positives = 36/89 (40%), Gaps = 20/89 (22%)
Query: 14 LQPGPAVSLKCIASG-------------NPTPDIGWTLDGFELPTN-----NRFVIGQFV 55
+QPG A+ L C+ SG +P + W P N + V G+F
Sbjct: 163 VQPGGAMKLSCVTSGFTFGHYWMNWVRQSPEKGLEWVAQFRNKPYNYETYYSDSVKGRFT 222
Query: 56 SGHGDVIS--HVNISHVTVEDGGEYACVA 82
D S ++ ++++ VED G Y C
Sbjct: 223 ISRDDSKSSVYLQMNNLRVEDTGIYYCTG 251
>pdb|1PZ5|B Chain B, Structural Basis Of Peptide-Carbohydrate Mimicry In An
Antibody Combining Site
Length = 220
Score = 28.1 bits (61), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 23/88 (26%), Positives = 38/88 (43%), Gaps = 22/88 (25%)
Query: 14 LQPGPAVSLKCIASG-------------NPTPDIGWTLDGFELPTNN------RFVIGQF 54
+QPG ++ L C+ASG +P + W + L +NN V G+F
Sbjct: 12 VQPGGSMKLSCVASGFTFSNYWMEWVRQSPEKGLEWVAE-IRLKSNNYATHYAESVKGRF 70
Query: 55 VSGHGDVIS--HVNISHVTVEDGGEYAC 80
D S ++ ++++ ED G Y C
Sbjct: 71 TISRDDSKSSVYLQMNNLRAEDTGIYYC 98
>pdb|1I3V|A Chain A, Three-Dimensional Structure Of A Lama Vhh Domain
Unliganded
pdb|1I3V|B Chain B, Three-Dimensional Structure Of A Lama Vhh Domain
Unliganded
Length = 129
Score = 28.1 bits (61), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 27/104 (25%), Positives = 42/104 (40%), Gaps = 20/104 (19%)
Query: 73 EDGGEYACVAENRAGTCEITPYDSGPYLIAWFKDGRQIPGRTSSTSLVINPVGREDRGIY 132
E GG ++ +CE + G Y+I WF RQ PG+ + + +GR G
Sbjct: 6 ESGGGLVQAGDSLKLSCEASGDSIGTYVIGWF---RQAPGK---ERIYLATIGRNLVGPS 59
Query: 133 QCIARRSDG---------DVAQGSAELQLGGLPYVRLIPKVTAI 167
R +D D A+ + LQ+ L P+ TA+
Sbjct: 60 DFYTRYADSVKGRFAVSRDNAKNTVNLQMNSLK-----PEDTAV 98
>pdb|1BUP|A Chain A, T13s Mutant Of Bovine 70 Kilodalton Heat Shock Protein
Length = 386
Score = 28.1 bits (61), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 23/80 (28%), Positives = 34/80 (42%), Gaps = 6/80 (7%)
Query: 70 VTVEDGGEYACVAENRAGTCEITPYDSG----PYLIAWFKDGRQIPGRTSSTSLVINPVG 125
V ++ G Y+CV + G EI D G P +A F D ++ G + + +NP
Sbjct: 7 VGIDLGSTYSCVGVFQHGKVEIIANDQGNRTTPSYVA-FTDTERLIGDAAKNQVAMNPTN 65
Query: 126 REDRGIYQCIARRSDGDVAQ 145
+ I RR D V Q
Sbjct: 66 TV-FDAKRLIGRRFDDAVVQ 84
>pdb|1SM3|H Chain H, Crystal Structure Of The Tumor Specific Antibody Sm3
Complex With Its Peptide Epitope
Length = 218
Score = 28.1 bits (61), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 23/88 (26%), Positives = 38/88 (43%), Gaps = 22/88 (25%)
Query: 14 LQPGPAVSLKCIASG-------------NPTPDIGWTLDGFELPTNN------RFVIGQF 54
+QPG ++ L C+ASG +P + W + L +NN V G+F
Sbjct: 12 VQPGGSMKLSCVASGFTFSNYWMNWVRQSPEKGLEWVAE-IRLKSNNYATHYAESVKGRF 70
Query: 55 VSGHGDVIS--HVNISHVTVEDGGEYAC 80
D S ++ ++++ ED G Y C
Sbjct: 71 TISRDDSKSSVYLQMNNLRAEDTGIYYC 98
>pdb|3O4O|C Chain C, Crystal Structure Of An Interleukin-1 Receptor Complex
Length = 339
Score = 28.1 bits (61), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 29/118 (24%), Positives = 48/118 (40%), Gaps = 12/118 (10%)
Query: 105 KDGRQIPGRTSSTSLVINPVGREDRGIYQCI---ARRSDGDVAQGSAELQLGG-----LP 156
KD + +T L+++ V ED G Y+C+ A S EL++ +P
Sbjct: 168 KDNEKFLSVRGTTHLLVHDVALEDAGYYRCVLTFAHEGQQYNITRSIELRIKKKKEETIP 227
Query: 157 Y-VRLIPKVTAIDGEGLSIKCPV---AGYPIEEVHWEKVPPKIESFAFPFDGLPEGAR 210
+ + ++A G L+I C V G P+ + W A+P + EG R
Sbjct: 228 VIISPLKTISASLGSRLTIPCKVFLGTGTPLTTMLWWTANDTHIESAYPGGRVTEGPR 285
>pdb|1I3U|A Chain A, Three-Dimensional Structure Of A Llama Vhh Domain
Complexed With The Dye Rr1
Length = 127
Score = 28.1 bits (61), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 27/104 (25%), Positives = 42/104 (40%), Gaps = 20/104 (19%)
Query: 73 EDGGEYACVAENRAGTCEITPYDSGPYLIAWFKDGRQIPGRTSSTSLVINPVGREDRGIY 132
E GG ++ +CE + G Y+I WF RQ PG+ + + +GR G
Sbjct: 6 ESGGGLVQAGDSLKLSCEASGDSIGTYVIGWF---RQAPGK---ERIYLATIGRNLVGPS 59
Query: 133 QCIARRSDG---------DVAQGSAELQLGGLPYVRLIPKVTAI 167
R +D D A+ + LQ+ L P+ TA+
Sbjct: 60 DFYTRYADSVKGRFAVSRDNAKNTVNLQMNSLK-----PEDTAV 98
>pdb|3JVG|A Chain A, Crystal Structure Of Chicken Cd1-1
pdb|3JVG|B Chain B, Crystal Structure Of Chicken Cd1-1
Length = 281
Score = 28.1 bits (61), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 8/23 (34%), Positives = 14/23 (60%)
Query: 89 CEITPYDSGPYLIAWFKDGRQIP 111
C +T + P + W +DGR++P
Sbjct: 201 CRVTSFYPRPIAVTWLRDGREVP 223
>pdb|1IAI|I Chain I, Idiotype-Anti-Idiotype Fab Complex
pdb|1AIF|H Chain H, Anti-Idiotypic Fab 409.5.3 (Igg2a) Fab From Mouse
pdb|1AIF|B Chain B, Anti-Idiotypic Fab 409.5.3 (Igg2a) Fab From Mouse
Length = 218
Score = 28.1 bits (61), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 23/89 (25%), Positives = 39/89 (43%), Gaps = 22/89 (24%)
Query: 14 LQPGPAVSLKCIASG-------------NPTPDIGWTLDGFELPTNN------RFVIGQF 54
+QPG ++ L C+ASG +P + W + L ++N V G+F
Sbjct: 12 VQPGGSMKLSCVASGFTFNNYWMSWVRQSPEKGLEWVAE-IRLNSDNFATHYAESVKGKF 70
Query: 55 VSGHGDVIS--HVNISHVTVEDGGEYACV 81
+ D S ++ ++ + ED G Y CV
Sbjct: 71 IISRDDSKSRLYLQMNSLRAEDTGIYYCV 99
>pdb|2C5D|C Chain C, Structure Of A Minimal Gas6-Axl Complex
pdb|2C5D|D Chain D, Structure Of A Minimal Gas6-Axl Complex
Length = 195
Score = 28.1 bits (61), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 19/67 (28%), Positives = 33/67 (49%), Gaps = 7/67 (10%)
Query: 21 SLKCI--ASGNPTPDIGWTLDG--FELP--TNNRFVIGQFVSGHGDVISHVNISHVTVED 74
+L+C G P P++ W DG EL T + +G+ V+S + I+ + + D
Sbjct: 21 TLRCQLQVQGEP-PEVHWLRDGQILELADSTQTQVPLGEDEQDDWIVVSQLRITSLQLSD 79
Query: 75 GGEYACV 81
G+Y C+
Sbjct: 80 TGQYQCL 86
>pdb|1FH5|L Chain L, Crystal Structure Of The Fab Fragment Of The Monoclonal
Antibody Mak33
Length = 213
Score = 28.1 bits (61), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 28/93 (30%), Positives = 41/93 (44%), Gaps = 15/93 (16%)
Query: 4 ILTYSFIEQTLQPGPAVSLKCIASGNPTPDIGW-TLDGFELPTNNRFVI---GQFVSGHG 59
+LT S ++ PG +VSL C AS + + ++ W E P R +I Q +SG
Sbjct: 3 VLTQSPATLSVTPGESVSLSCRASQSISNNLHWYQQKSHESP---RLLIKYASQSISGIP 59
Query: 60 DVIS--------HVNISHVTVEDGGEYACVAEN 84
S ++I+ V ED G Y C N
Sbjct: 60 SRFSGSGSGTDFTLSINSVETEDFGMYYCQQSN 92
>pdb|1ZMY|A Chain A, Cabbcii-10 Vhh Framework With Cdr Loops Of Cablys3 Grafted
On It And In Complex With Hen Egg White Lysozyme
Length = 142
Score = 28.1 bits (61), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 18/54 (33%), Positives = 22/54 (40%), Gaps = 3/54 (5%)
Query: 72 VEDGGEYACVAENRAGTCEITPYDSGPYLIAWFKDGRQIPGRTSSTSLVINPVG 125
VE GG + +C + Y GPY + WF RQ PG IN G
Sbjct: 5 VESGGGSVQAGGSLRLSCTASGYTIGPYCMGWF---RQAPGGEREAVAAINMGG 55
>pdb|2NCM|A Chain A, Neural Cell Adhesion Molecule, Nmr, 20 Structures
Length = 99
Score = 28.1 bits (61), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 18/83 (21%), Positives = 38/83 (45%), Gaps = 12/83 (14%)
Query: 81 VAENRAGTCEITPYDSGPYLIAWFK-DGRQIP----------GRTSSTSLVINPVGREDR 129
V E++ C++ D+ I+WF +G ++ S++L I +D
Sbjct: 16 VGESKFFLCQVAG-DAKDKDISWFSPNGEKLSPNQQRISVVWNDDDSSTLTIYNANIDDA 74
Query: 130 GIYQCIARRSDGDVAQGSAELQL 152
GIY+C+ DG ++ + +++
Sbjct: 75 GIYKCVVTAEDGTQSEATVNVKI 97
>pdb|1MOE|A Chain A, The Three-Dimensional Structure Of An Engineered Scfv
T84.66 Dimer Or Diabody In Vl To Vh Linkage.
pdb|1MOE|B Chain B, The Three-Dimensional Structure Of An Engineered Scfv
T84.66 Dimer Or Diabody In Vl To Vh Linkage
Length = 240
Score = 28.1 bits (61), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 24/92 (26%), Positives = 41/92 (44%), Gaps = 9/92 (9%)
Query: 112 GRTSSTSLVINPVGREDRGIYQCIARRSDGDVAQGSAELQLGGLPY-----VRLIPKVTA 166
G + +L+I+PV +D Y C D G +L++ G V+L
Sbjct: 70 GSRTDFTLIIDPVEADDVATYYCQQTNEDPYTFGGGTKLEIKGGGSGGGGEVQLQQSGAE 129
Query: 167 IDGEGLSIK--CPVAGYPIEE--VHWEKVPPK 194
+ G S+K C +G+ I++ +HW K P+
Sbjct: 130 LVEPGASVKLSCTASGFNIKDTYMHWVKQRPE 161
>pdb|2X24|A Chain A, Bovine Acc2 Ct Domain In Complex With Inhibitor
pdb|2X24|B Chain B, Bovine Acc2 Ct Domain In Complex With Inhibitor
Length = 793
Score = 28.1 bits (61), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 33/116 (28%), Positives = 44/116 (37%), Gaps = 27/116 (23%)
Query: 61 VISHVNISHVTVEDGGEYACV---------AENRAGTCEITPYD-----------SGPYL 100
++ H +SHVTV D E C +NR+ +TP D GPY
Sbjct: 320 IMHHNGVSHVTVPDDFEGVCTILEWLSYMPKDNRSPVPVVTPKDPIDREIEFQPSRGPYD 379
Query: 101 IAWFKDGRQIPGRTSSTSLVINPVGREDRGIYQCIARRSDGDVAQGSAELQLGGLP 156
W GR P S G D+G ++ I V G A +LGG+P
Sbjct: 380 PRWLLAGRPHPTLKGSWQ-----SGFFDQGSFKEIMVPWAQTVVTGRA--RLGGIP 428
>pdb|1EPF|A Chain A, Crystal Structure Of The Two N-Terminal Immunoglobulin
Domains Of The Neural Cell Adhesion Molecule (Ncam)
pdb|1EPF|B Chain B, Crystal Structure Of The Two N-Terminal Immunoglobulin
Domains Of The Neural Cell Adhesion Molecule (Ncam)
pdb|1EPF|C Chain C, Crystal Structure Of The Two N-Terminal Immunoglobulin
Domains Of The Neural Cell Adhesion Molecule (Ncam)
pdb|1EPF|D Chain D, Crystal Structure Of The Two N-Terminal Immunoglobulin
Domains Of The Neural Cell Adhesion Molecule (Ncam)
Length = 191
Score = 27.7 bits (60), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 18/83 (21%), Positives = 38/83 (45%), Gaps = 12/83 (14%)
Query: 81 VAENRAGTCEITPYDSGPYLIAWFK-DGRQIP----------GRTSSTSLVINPVGREDR 129
V E++ C++ D+ I+WF +G ++ S++L I +D
Sbjct: 16 VGESKFFLCQVAG-DAKDKDISWFSPNGEKLSPNQQRISVVWNDDDSSTLTIYNANIDDA 74
Query: 130 GIYQCIARRSDGDVAQGSAELQL 152
GIY+C+ DG ++ + +++
Sbjct: 75 GIYKCVVTAEDGTQSEATVNVKI 97
>pdb|1RI8|A Chain A, Crystal Structure Of The Camelid Single Domain Antibody
1d2l19 In Complex With Hen Egg White Lysozyme
Length = 134
Score = 27.7 bits (60), Expect = 7.3, Method: Compositional matrix adjust.
Identities = 26/90 (28%), Positives = 39/90 (43%), Gaps = 13/90 (14%)
Query: 72 VEDGGEYACVAENRAGTCEITPYDSGPYLIAWFKDGRQIPGRTSSTSLVINPVGRED--- 128
VE GG + +C ++ Y Y + WF R+ PG+ VI+ GR
Sbjct: 5 VESGGGSVQAGGSLRLSCAVSGYKDRNYCMGWF---RRAPGKEREGVAVIDSSGRTAYAD 61
Query: 129 --RGIYQCIARRSDGDVAQGSAELQLGGLP 156
+G + I+R DVA +A LQ+ L
Sbjct: 62 SVKGRFT-ISR----DVALDTAYLQMNSLK 86
>pdb|1DQJ|A Chain A, Crystal Structure Of The Anti-Lysozyme Antibody Hyhel-63
Complexed With Hen Egg White Lysozyme
pdb|1DQM|L Chain L, Crystal Structure Of Anti-Lysozyme Antibody
pdb|1DQQ|A Chain A, Crystal Structure Of Anti-Lysozyme Antibody Hyhel-63
pdb|1DQQ|C Chain C, Crystal Structure Of Anti-Lysozyme Antibody Hyhel-63
pdb|1NBY|A Chain A, Crystal Structure Of Hyhel-63 Complexed With Hel Mutant
K96a
pdb|1NBZ|A Chain A, Crystal Structure Of Hyhel-63 Complexed With Hel Mutant
K97a
pdb|1NDG|A Chain A, Crystal Structure Of Fab Fragment Of Antibody Hyhel-8
Complexed With Its Antigen Lysozyme
pdb|1NDM|A Chain A, Crystal Structure Of Fab Fragment Of Antibody Hyhel-26
Complexed With Lysozyme
pdb|1XGU|A Chain A, Structure For Antibody Hyhel-63 Y33f Mutant Complexed
With Hen Egg Lysozyme
Length = 214
Score = 27.7 bits (60), Expect = 7.6, Method: Compositional matrix adjust.
Identities = 28/93 (30%), Positives = 41/93 (44%), Gaps = 15/93 (16%)
Query: 4 ILTYSFIEQTLQPGPAVSLKCIASGNPTPDIGW-TLDGFELPTNNRFVI---GQFVSGHG 59
+LT S ++ PG +VSL C AS + + ++ W E P R +I Q +SG
Sbjct: 3 VLTQSPATLSVTPGDSVSLSCRASQSISNNLHWYQQKSHESP---RLLIKYASQSISGIP 59
Query: 60 DVIS--------HVNISHVTVEDGGEYACVAEN 84
S ++I+ V ED G Y C N
Sbjct: 60 SRFSGSGSGTDFTLSINSVETEDFGMYFCQQSN 92
>pdb|1XGP|A Chain A, Structure For Antibody Hyhel-63 Y33a Mutant Complexed
With Hen Egg Lysozyme
pdb|1XGQ|A Chain A, Structure For Antibody Hyhel-63 Y33v Mutant Complexed
With Hen Egg Lysozyme
pdb|1XGR|A Chain A, Structure For Antibody Hyhel-63 Y33i Mutant Complexed
With Hen Egg Lysozyme
pdb|1XGT|A Chain A, Structure For Antibody Hyhel-63 Y33l Mutant Complexed
With Hen Egg Lysozyme
Length = 215
Score = 27.7 bits (60), Expect = 7.8, Method: Compositional matrix adjust.
Identities = 28/93 (30%), Positives = 41/93 (44%), Gaps = 15/93 (16%)
Query: 4 ILTYSFIEQTLQPGPAVSLKCIASGNPTPDIGW-TLDGFELPTNNRFVI---GQFVSGHG 59
+LT S ++ PG +VSL C AS + + ++ W E P R +I Q +SG
Sbjct: 4 VLTQSPATLSVTPGDSVSLSCRASQSISNNLHWYQQKSHESP---RLLIKYASQSISGIP 60
Query: 60 DVIS--------HVNISHVTVEDGGEYACVAEN 84
S ++I+ V ED G Y C N
Sbjct: 61 SRFSGSGSGTDFTLSINSVETEDFGMYFCQQSN 93
>pdb|2PCD|A Chain A, Structure Of Protocatechuate 3,4-Dioxygenase From
Pseudomonas Aeruginosa At 2.15 Angstroms Resolution
pdb|2PCD|B Chain B, Structure Of Protocatechuate 3,4-Dioxygenase From
Pseudomonas Aeruginosa At 2.15 Angstroms Resolution
pdb|2PCD|C Chain C, Structure Of Protocatechuate 3,4-Dioxygenase From
Pseudomonas Aeruginosa At 2.15 Angstroms Resolution
pdb|2PCD|D Chain D, Structure Of Protocatechuate 3,4-Dioxygenase From
Pseudomonas Aeruginosa At 2.15 Angstroms Resolution
pdb|2PCD|E Chain E, Structure Of Protocatechuate 3,4-Dioxygenase From
Pseudomonas Aeruginosa At 2.15 Angstroms Resolution
pdb|2PCD|F Chain F, Structure Of Protocatechuate 3,4-Dioxygenase From
Pseudomonas Aeruginosa At 2.15 Angstroms Resolution
pdb|3PCF|A Chain A, Structure Of Protocatechuate 3,4-Dioxygenase Complexed
With 3-Fluro-4- Hydroxybenzoate
pdb|3PCF|B Chain B, Structure Of Protocatechuate 3,4-Dioxygenase Complexed
With 3-Fluro-4- Hydroxybenzoate
pdb|3PCF|C Chain C, Structure Of Protocatechuate 3,4-Dioxygenase Complexed
With 3-Fluro-4- Hydroxybenzoate
pdb|3PCF|D Chain D, Structure Of Protocatechuate 3,4-Dioxygenase Complexed
With 3-Fluro-4- Hydroxybenzoate
pdb|3PCF|E Chain E, Structure Of Protocatechuate 3,4-Dioxygenase Complexed
With 3-Fluro-4- Hydroxybenzoate
pdb|3PCF|F Chain F, Structure Of Protocatechuate 3,4-Dioxygenase Complexed
With 3-Fluro-4- Hydroxybenzoate
pdb|3PCH|A Chain A, Structure Of Protocatechuate 3,4-Dioxygenase Complexed
With 3-Chloro- 4-Hydroxybenzoate
pdb|3PCH|B Chain B, Structure Of Protocatechuate 3,4-Dioxygenase Complexed
With 3-Chloro- 4-Hydroxybenzoate
pdb|3PCH|C Chain C, Structure Of Protocatechuate 3,4-Dioxygenase Complexed
With 3-Chloro- 4-Hydroxybenzoate
pdb|3PCH|D Chain D, Structure Of Protocatechuate 3,4-Dioxygenase Complexed
With 3-Chloro- 4-Hydroxybenzoate
pdb|3PCH|E Chain E, Structure Of Protocatechuate 3,4-Dioxygenase Complexed
With 3-Chloro- 4-Hydroxybenzoate
pdb|3PCH|F Chain F, Structure Of Protocatechuate 3,4-Dioxygenase Complexed
With 3-Chloro- 4-Hydroxybenzoate
pdb|3PCL|A Chain A, Structure Of Protocatechuate 3,4-Dioxygenase Complexed
With 2- Hydroxyisonicotinic Acid N-Oxide And Cyanide
pdb|3PCL|B Chain B, Structure Of Protocatechuate 3,4-Dioxygenase Complexed
With 2- Hydroxyisonicotinic Acid N-Oxide And Cyanide
pdb|3PCL|C Chain C, Structure Of Protocatechuate 3,4-Dioxygenase Complexed
With 2- Hydroxyisonicotinic Acid N-Oxide And Cyanide
pdb|3PCL|D Chain D, Structure Of Protocatechuate 3,4-Dioxygenase Complexed
With 2- Hydroxyisonicotinic Acid N-Oxide And Cyanide
pdb|3PCL|E Chain E, Structure Of Protocatechuate 3,4-Dioxygenase Complexed
With 2- Hydroxyisonicotinic Acid N-Oxide And Cyanide
pdb|3PCL|F Chain F, Structure Of Protocatechuate 3,4-Dioxygenase Complexed
With 2- Hydroxyisonicotinic Acid N-Oxide And Cyanide
pdb|3PCM|A Chain A, Structure Of Protocatechuate 3,4-dioxygenase Complexed
With 6- Hydroxynicotinic Acid N-oxide And Cyanide
pdb|3PCM|B Chain B, Structure Of Protocatechuate 3,4-dioxygenase Complexed
With 6- Hydroxynicotinic Acid N-oxide And Cyanide
pdb|3PCM|C Chain C, Structure Of Protocatechuate 3,4-dioxygenase Complexed
With 6- Hydroxynicotinic Acid N-oxide And Cyanide
pdb|3PCM|D Chain D, Structure Of Protocatechuate 3,4-dioxygenase Complexed
With 6- Hydroxynicotinic Acid N-oxide And Cyanide
pdb|3PCM|E Chain E, Structure Of Protocatechuate 3,4-dioxygenase Complexed
With 6- Hydroxynicotinic Acid N-oxide And Cyanide
pdb|3PCM|F Chain F, Structure Of Protocatechuate 3,4-dioxygenase Complexed
With 6- Hydroxynicotinic Acid N-oxide And Cyanide
pdb|3PCA|A Chain A, Structure Of Protocatechuate 3,4-Dioxygenase Complexed
With 3,4- Dihydroxybenzoate
pdb|3PCA|B Chain B, Structure Of Protocatechuate 3,4-Dioxygenase Complexed
With 3,4- Dihydroxybenzoate
pdb|3PCA|C Chain C, Structure Of Protocatechuate 3,4-Dioxygenase Complexed
With 3,4- Dihydroxybenzoate
pdb|3PCA|D Chain D, Structure Of Protocatechuate 3,4-Dioxygenase Complexed
With 3,4- Dihydroxybenzoate
pdb|3PCA|E Chain E, Structure Of Protocatechuate 3,4-Dioxygenase Complexed
With 3,4- Dihydroxybenzoate
pdb|3PCA|F Chain F, Structure Of Protocatechuate 3,4-Dioxygenase Complexed
With 3,4- Dihydroxybenzoate
pdb|3PCI|A Chain A, Structure Of Protocatechuate 3,4-Dioxygenase Complexed
With 3-Iodo-4- Hydroxybenzoate
pdb|3PCI|B Chain B, Structure Of Protocatechuate 3,4-Dioxygenase Complexed
With 3-Iodo-4- Hydroxybenzoate
pdb|3PCI|C Chain C, Structure Of Protocatechuate 3,4-Dioxygenase Complexed
With 3-Iodo-4- Hydroxybenzoate
pdb|3PCI|D Chain D, Structure Of Protocatechuate 3,4-Dioxygenase Complexed
With 3-Iodo-4- Hydroxybenzoate
pdb|3PCI|E Chain E, Structure Of Protocatechuate 3,4-Dioxygenase Complexed
With 3-Iodo-4- Hydroxybenzoate
pdb|3PCI|F Chain F, Structure Of Protocatechuate 3,4-Dioxygenase Complexed
With 3-Iodo-4- Hydroxybenzoate
pdb|3PCJ|A Chain A, Structure Of Protocatechuate 3,4-Dioxygenase Complexed
With 2- Hydroxyisonicotinic Acid N-Oxide
pdb|3PCJ|B Chain B, Structure Of Protocatechuate 3,4-Dioxygenase Complexed
With 2- Hydroxyisonicotinic Acid N-Oxide
pdb|3PCJ|C Chain C, Structure Of Protocatechuate 3,4-Dioxygenase Complexed
With 2- Hydroxyisonicotinic Acid N-Oxide
pdb|3PCJ|D Chain D, Structure Of Protocatechuate 3,4-Dioxygenase Complexed
With 2- Hydroxyisonicotinic Acid N-Oxide
pdb|3PCJ|E Chain E, Structure Of Protocatechuate 3,4-Dioxygenase Complexed
With 2- Hydroxyisonicotinic Acid N-Oxide
pdb|3PCJ|F Chain F, Structure Of Protocatechuate 3,4-Dioxygenase Complexed
With 2- Hydroxyisonicotinic Acid N-Oxide
pdb|3PCK|A Chain A, Structure Of Protocatechuate 3,4-Dioxygenase Complexed
With 6- Hydroxynicotinic Acid N-Oxide
pdb|3PCK|B Chain B, Structure Of Protocatechuate 3,4-Dioxygenase Complexed
With 6- Hydroxynicotinic Acid N-Oxide
pdb|3PCK|C Chain C, Structure Of Protocatechuate 3,4-Dioxygenase Complexed
With 6- Hydroxynicotinic Acid N-Oxide
pdb|3PCK|D Chain D, Structure Of Protocatechuate 3,4-Dioxygenase Complexed
With 6- Hydroxynicotinic Acid N-Oxide
pdb|3PCK|E Chain E, Structure Of Protocatechuate 3,4-Dioxygenase Complexed
With 6- Hydroxynicotinic Acid N-Oxide
pdb|3PCK|F Chain F, Structure Of Protocatechuate 3,4-Dioxygenase Complexed
With 6- Hydroxynicotinic Acid N-Oxide
pdb|3PCN|A Chain A, Structure Of Protocatechuate 3,4-Dioxygenase Complexed
With 3,4- Dihydroxyphenylacetate
pdb|3PCN|B Chain B, Structure Of Protocatechuate 3,4-Dioxygenase Complexed
With 3,4- Dihydroxyphenylacetate
pdb|3PCN|C Chain C, Structure Of Protocatechuate 3,4-Dioxygenase Complexed
With 3,4- Dihydroxyphenylacetate
pdb|3PCN|D Chain D, Structure Of Protocatechuate 3,4-Dioxygenase Complexed
With 3,4- Dihydroxyphenylacetate
pdb|3PCN|E Chain E, Structure Of Protocatechuate 3,4-Dioxygenase Complexed
With 3,4- Dihydroxyphenylacetate
pdb|3PCN|F Chain F, Structure Of Protocatechuate 3,4-Dioxygenase Complexed
With 3,4- Dihydroxyphenylacetate
pdb|3PCB|A Chain A, Structure Of Protocatechuate 3,4-Dioxygenase Complexed
With 3- Hydroxybenzoate
pdb|3PCB|B Chain B, Structure Of Protocatechuate 3,4-Dioxygenase Complexed
With 3- Hydroxybenzoate
pdb|3PCB|C Chain C, Structure Of Protocatechuate 3,4-Dioxygenase Complexed
With 3- Hydroxybenzoate
pdb|3PCB|D Chain D, Structure Of Protocatechuate 3,4-Dioxygenase Complexed
With 3- Hydroxybenzoate
pdb|3PCB|E Chain E, Structure Of Protocatechuate 3,4-Dioxygenase Complexed
With 3- Hydroxybenzoate
pdb|3PCB|F Chain F, Structure Of Protocatechuate 3,4-Dioxygenase Complexed
With 3- Hydroxybenzoate
pdb|3PCC|A Chain A, Structure Of Protocatechuate 3,4-Dioxygenase Complexed
With 4- Hydroxybenzoate
pdb|3PCC|B Chain B, Structure Of Protocatechuate 3,4-Dioxygenase Complexed
With 4- Hydroxybenzoate
pdb|3PCC|C Chain C, Structure Of Protocatechuate 3,4-Dioxygenase Complexed
With 4- Hydroxybenzoate
pdb|3PCC|D Chain D, Structure Of Protocatechuate 3,4-Dioxygenase Complexed
With 4- Hydroxybenzoate
pdb|3PCC|E Chain E, Structure Of Protocatechuate 3,4-Dioxygenase Complexed
With 4- Hydroxybenzoate
pdb|3PCC|F Chain F, Structure Of Protocatechuate 3,4-Dioxygenase Complexed
With 4- Hydroxybenzoate
pdb|3PCD|A Chain A, Protocatechuate 3,4-Dioxygenase Y447h Mutant
pdb|3PCD|B Chain B, Protocatechuate 3,4-Dioxygenase Y447h Mutant
pdb|3PCD|C Chain C, Protocatechuate 3,4-Dioxygenase Y447h Mutant
pdb|3PCD|D Chain D, Protocatechuate 3,4-Dioxygenase Y447h Mutant
pdb|3PCD|E Chain E, Protocatechuate 3,4-Dioxygenase Y447h Mutant
pdb|3PCD|F Chain F, Protocatechuate 3,4-Dioxygenase Y447h Mutant
pdb|3PCE|A Chain A, Structure Of Protocatechuate 3,4-Dioxygenase Complexed
With 3- Hydroxyphenylacetate
pdb|3PCE|B Chain B, Structure Of Protocatechuate 3,4-Dioxygenase Complexed
With 3- Hydroxyphenylacetate
pdb|3PCE|C Chain C, Structure Of Protocatechuate 3,4-Dioxygenase Complexed
With 3- Hydroxyphenylacetate
pdb|3PCE|D Chain D, Structure Of Protocatechuate 3,4-Dioxygenase Complexed
With 3- Hydroxyphenylacetate
pdb|3PCE|E Chain E, Structure Of Protocatechuate 3,4-Dioxygenase Complexed
With 3- Hydroxyphenylacetate
pdb|3PCE|F Chain F, Structure Of Protocatechuate 3,4-Dioxygenase Complexed
With 3- Hydroxyphenylacetate
pdb|3PCG|A Chain A, Structure Of Protocatechuate 3,4-Dioxygenase Complexed
With The Inhibitor 4-Hydroxyphenylacetate
pdb|3PCG|B Chain B, Structure Of Protocatechuate 3,4-Dioxygenase Complexed
With The Inhibitor 4-Hydroxyphenylacetate
pdb|3PCG|C Chain C, Structure Of Protocatechuate 3,4-Dioxygenase Complexed
With The Inhibitor 4-Hydroxyphenylacetate
pdb|3PCG|D Chain D, Structure Of Protocatechuate 3,4-Dioxygenase Complexed
With The Inhibitor 4-Hydroxyphenylacetate
pdb|3PCG|E Chain E, Structure Of Protocatechuate 3,4-Dioxygenase Complexed
With The Inhibitor 4-Hydroxyphenylacetate
pdb|3PCG|F Chain F, Structure Of Protocatechuate 3,4-Dioxygenase Complexed
With The Inhibitor 4-Hydroxyphenylacetate
pdb|1YKK|A Chain A, Protocatechuate 3,4-dioxygenase Y408c Mutant
pdb|1YKK|C Chain C, Protocatechuate 3,4-dioxygenase Y408c Mutant
pdb|1YKK|E Chain E, Protocatechuate 3,4-dioxygenase Y408c Mutant
pdb|1YKK|G Chain G, Protocatechuate 3,4-dioxygenase Y408c Mutant
pdb|1YKK|I Chain I, Protocatechuate 3,4-dioxygenase Y408c Mutant
pdb|1YKK|K Chain K, Protocatechuate 3,4-dioxygenase Y408c Mutant
pdb|1YKL|A Chain A, Protocatechuate 3,4-Dioxygenase Y408c Mutant Bound To Dhb
pdb|1YKL|C Chain C, Protocatechuate 3,4-Dioxygenase Y408c Mutant Bound To Dhb
pdb|1YKL|E Chain E, Protocatechuate 3,4-Dioxygenase Y408c Mutant Bound To Dhb
pdb|1YKL|G Chain G, Protocatechuate 3,4-Dioxygenase Y408c Mutant Bound To Dhb
pdb|1YKL|I Chain I, Protocatechuate 3,4-Dioxygenase Y408c Mutant Bound To Dhb
pdb|1YKL|K Chain K, Protocatechuate 3,4-Dioxygenase Y408c Mutant Bound To Dhb
pdb|1YKM|A Chain A, Protocatechuate 3,4-dioxygenase Y408e Mutant
pdb|1YKM|C Chain C, Protocatechuate 3,4-dioxygenase Y408e Mutant
pdb|1YKM|E Chain E, Protocatechuate 3,4-dioxygenase Y408e Mutant
pdb|1YKM|G Chain G, Protocatechuate 3,4-dioxygenase Y408e Mutant
pdb|1YKM|I Chain I, Protocatechuate 3,4-dioxygenase Y408e Mutant
pdb|1YKM|K Chain K, Protocatechuate 3,4-dioxygenase Y408e Mutant
pdb|1YKN|A Chain A, Protocatechuate 3,4-Dioxygenase Y408e Mutant Bound To Dhb
pdb|1YKN|C Chain C, Protocatechuate 3,4-Dioxygenase Y408e Mutant Bound To Dhb
pdb|1YKN|E Chain E, Protocatechuate 3,4-Dioxygenase Y408e Mutant Bound To Dhb
pdb|1YKN|G Chain G, Protocatechuate 3,4-Dioxygenase Y408e Mutant Bound To Dhb
pdb|1YKN|I Chain I, Protocatechuate 3,4-Dioxygenase Y408e Mutant Bound To Dhb
pdb|1YKN|K Chain K, Protocatechuate 3,4-Dioxygenase Y408e Mutant Bound To Dhb
pdb|1YKO|A Chain A, Protocatechuate 3,4-Dioxygenase Y408h Mutant
pdb|1YKO|C Chain C, Protocatechuate 3,4-Dioxygenase Y408h Mutant
pdb|1YKO|E Chain E, Protocatechuate 3,4-Dioxygenase Y408h Mutant
pdb|1YKO|G Chain G, Protocatechuate 3,4-Dioxygenase Y408h Mutant
pdb|1YKO|I Chain I, Protocatechuate 3,4-Dioxygenase Y408h Mutant
pdb|1YKO|K Chain K, Protocatechuate 3,4-Dioxygenase Y408h Mutant
pdb|1YKP|A Chain A, Protocatechuate 3,4-Dioxygenase Y408h Mutant Bound To Dhb
pdb|1YKP|C Chain C, Protocatechuate 3,4-Dioxygenase Y408h Mutant Bound To Dhb
pdb|1YKP|E Chain E, Protocatechuate 3,4-Dioxygenase Y408h Mutant Bound To Dhb
pdb|1YKP|G Chain G, Protocatechuate 3,4-Dioxygenase Y408h Mutant Bound To Dhb
pdb|1YKP|I Chain I, Protocatechuate 3,4-Dioxygenase Y408h Mutant Bound To Dhb
pdb|1YKP|K Chain K, Protocatechuate 3,4-Dioxygenase Y408h Mutant Bound To Dhb
pdb|3LMX|A Chain A, Tyrosine 447 Of Protocatechuate 34,-Dioxygenase Controls
Efficient Progress Through Catalysis
pdb|3LMX|B Chain B, Tyrosine 447 Of Protocatechuate 34,-Dioxygenase Controls
Efficient Progress Through Catalysis
pdb|3LMX|C Chain C, Tyrosine 447 Of Protocatechuate 34,-Dioxygenase Controls
Efficient Progress Through Catalysis
pdb|3LKT|A Chain A, Tyrosine 447 Of Protocatechuate 3,4-Dioxygenase Controls
Efficient Progress Through Catalysis
pdb|3LKT|B Chain B, Tyrosine 447 Of Protocatechuate 3,4-Dioxygenase Controls
Efficient Progress Through Catalysis
pdb|3LKT|C Chain C, Tyrosine 447 Of Protocatechuate 3,4-Dioxygenase Controls
Efficient Progress Through Catalysis
pdb|3LKT|D Chain D, Tyrosine 447 Of Protocatechuate 3,4-Dioxygenase Controls
Efficient Progress Through Catalysis
pdb|3LKT|E Chain E, Tyrosine 447 Of Protocatechuate 3,4-Dioxygenase Controls
Efficient Progress Through Catalysis
pdb|3LKT|F Chain F, Tyrosine 447 Of Protocatechuate 3,4-Dioxygenase Controls
Efficient Progress Through Catalysis
pdb|3LXV|A Chain A, Tyrosine 447 Of Protocatechuate 3,4-Dioxygenase Controls
Efficient Progress Through Catalysis
pdb|3LXV|B Chain B, Tyrosine 447 Of Protocatechuate 3,4-Dioxygenase Controls
Efficient Progress Through Catalysis
pdb|3LXV|C Chain C, Tyrosine 447 Of Protocatechuate 3,4-Dioxygenase Controls
Efficient Progress Through Catalysis
pdb|3MFL|A Chain A, Axial Ligand Swapping In Double Mutant Maintains
Intradiol-Cleavage Chemistry In Protocatechuate
3,4-Dioxygenase
pdb|3MFL|B Chain B, Axial Ligand Swapping In Double Mutant Maintains
Intradiol-Cleavage Chemistry In Protocatechuate
3,4-Dioxygenase
pdb|3MFL|C Chain C, Axial Ligand Swapping In Double Mutant Maintains
Intradiol-Cleavage Chemistry In Protocatechuate
3,4-Dioxygenase
pdb|3MI1|A Chain A, Axial Ligand Swapping In Double Mutant Maintains
Intradiol-Cleavage Chemistry In Protocatechuate
3,4-Dioxygenase
pdb|3MI1|B Chain B, Axial Ligand Swapping In Double Mutant Maintains
Intradiol-Cleavage Chemistry In Protocatechuate
3,4-Dioxygenase
pdb|3MI1|C Chain C, Axial Ligand Swapping In Double Mutant Maintains
Intradiol-Cleavage Chemistry In Protocatechuate
3,4-Dioxygenase
pdb|3MI5|A Chain A, Axial Ligand Swapping In Double Mutant Maintains
Intradiol-Cleavage Chemistry In Protocatechuate
3,4-Dioxygenase
pdb|3MI5|B Chain B, Axial Ligand Swapping In Double Mutant Maintains
Intradiol-Cleavage Chemistry In Protocatechuate
3,4-Dioxygenase
pdb|3MI5|C Chain C, Axial Ligand Swapping In Double Mutant Maintains
Intradiol-Cleavage Chemistry In Protocatechuate
3,4-Dioxygenase
pdb|3MI5|D Chain D, Axial Ligand Swapping In Double Mutant Maintains
Intradiol-Cleavage Chemistry In Protocatechuate
3,4-Dioxygenase
pdb|3MI5|E Chain E, Axial Ligand Swapping In Double Mutant Maintains
Intradiol-Cleavage Chemistry In Protocatechuate
3,4-Dioxygenase
pdb|3MI5|F Chain F, Axial Ligand Swapping In Double Mutant Maintains
Intradiol-Cleavage Chemistry In Protocatechuate
3,4-Dioxygenase
pdb|3MV4|A Chain A, Axial Ligand Swapping In Double Mutant Maintains
Intradiol-Cleavage Chemistry In Protocatechuate
3,4-Dioxygenase
pdb|3MV4|B Chain B, Axial Ligand Swapping In Double Mutant Maintains
Intradiol-Cleavage Chemistry In Protocatechuate
3,4-Dioxygenase
pdb|3MV4|C Chain C, Axial Ligand Swapping In Double Mutant Maintains
Intradiol-Cleavage Chemistry In Protocatechuate
3,4-Dioxygenase
pdb|3MV6|A Chain A, Axial Ligand Swapping In Double Mutant Maintains
Intradiol-Cleavage Chemistry In Protocatechuate
3,4-Dioxygenase
pdb|3MV6|B Chain B, Axial Ligand Swapping In Double Mutant Maintains
Intradiol-Cleavage Chemistry In Protocatechuate
3,4-Dioxygenase
pdb|3MV6|C Chain C, Axial Ligand Swapping In Double Mutant Maintains
Intradiol-Cleavage Chemistry In Protocatechuate
3,4-Dioxygenase
pdb|3T63|A Chain A, Axial Ligand Swapping In Double Mutant Maintains
Intradiol-Cleavage Chemistry In Protocatechuate
3,4-Dioxygenase
pdb|3T63|B Chain B, Axial Ligand Swapping In Double Mutant Maintains
Intradiol-Cleavage Chemistry In Protocatechuate
3,4-Dioxygenase
pdb|3T63|C Chain C, Axial Ligand Swapping In Double Mutant Maintains
Intradiol-Cleavage Chemistry In Protocatechuate
3,4-Dioxygenase
pdb|3T67|A Chain A, Axial Ligand Swapping In Double Mutant Maintains
Intradiol-Cleavage Chemistry In Protocatechuate
3,4-Dioxygenase
pdb|3T67|B Chain B, Axial Ligand Swapping In Double Mutant Maintains
Intradiol-Cleavage Chemistry In Protocatechuate
3,4-Dioxygenase
pdb|3T67|C Chain C, Axial Ligand Swapping In Double Mutant Maintains
Intradiol-Cleavage Chemistry In Protocatechuate
3,4-Dioxygenase
Length = 200
Score = 27.7 bits (60), Expect = 8.1, Method: Compositional matrix adjust.
Identities = 28/102 (27%), Positives = 44/102 (43%), Gaps = 6/102 (5%)
Query: 12 QTLQPGPAVSLKCIASGNPTPD--IGWTLDGFELPTNNRFVIGQFVSGHGDVISHVNISH 69
QT P + L A+GNPT D I L + P + ++GQ G+G ++ +
Sbjct: 11 QTAGPYVHIGLALEAAGNPTRDQEIWNRLAKPDAPGEHILLLGQVYDGNGHLVRDSFLEV 70
Query: 70 VTVEDGGEY--ACVAENRAGTC--EITPYDSGPYLIAWFKDG 107
+ GEY A EN + T +D+G + + K G
Sbjct: 71 WQADANGEYQDAYNLENAFNSFGRTATTFDAGEWTLHTVKPG 112
>pdb|1Q25|A Chain A, Crystal Structure Of N-terminal 3 Domains Of Ci-mpr
pdb|1SYO|A Chain A, N-Terminal 3 Domains Of Ci-Mpr Bound To Mannose
6-Phosphate
pdb|1SYO|B Chain B, N-Terminal 3 Domains Of Ci-Mpr Bound To Mannose
6-Phosphate
pdb|1SZ0|A Chain A, N-Terminal 3 Domains Of Ci-Mpr Bound To Mannose
6-Phosphate
pdb|1SZ0|B Chain B, N-Terminal 3 Domains Of Ci-Mpr Bound To Mannose
6-Phosphate
Length = 432
Score = 27.7 bits (60), Expect = 8.4, Method: Compositional matrix adjust.
Identities = 23/96 (23%), Positives = 40/96 (41%), Gaps = 22/96 (22%)
Query: 18 PAVSLKCIASGNPTPDIGWTLDGFELPTNNRFVI-------GQ--FVSGHGDVISHVNIS 68
P + C+ G+ D+G +G +L +N+R V+ GQ F GH ++
Sbjct: 191 PTGAAACLVRGDRAFDVGRPQEGLKLVSNDRLVLSYVKEGAGQPDFCDGHSPAVTIT--- 247
Query: 69 HVTVEDGGEYACVAENRAGTC-EITPYDSGPYLIAW 103
+ C +E R GT ++T + + I W
Sbjct: 248 ---------FVCPSERREGTIPKLTAKSNCRFEIEW 274
>pdb|1OPG|L Chain L, Opg2 Fab Fragment
pdb|1BM3|L Chain L, Immunoglobulin Opg2 Fab-Peptide Complex
Length = 214
Score = 27.3 bits (59), Expect = 9.0, Method: Compositional matrix adjust.
Identities = 28/93 (30%), Positives = 41/93 (44%), Gaps = 15/93 (16%)
Query: 4 ILTYSFIEQTLQPGPAVSLKCIASGNPTPDIGW-TLDGFELPTNNRFVI---GQFVSGHG 59
+LT S ++ PG +VSL C AS + + ++ W E P R +I Q +SG
Sbjct: 3 LLTQSPATLSVTPGDSVSLSCRASQSISNNLHWYQQKSHESP---RLLIKYASQSISGIP 59
Query: 60 DVIS--------HVNISHVTVEDGGEYACVAEN 84
S ++I+ V ED G Y C N
Sbjct: 60 SRFSGSGSGTDFTLSINSVETEDFGMYFCQQSN 92
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.318 0.138 0.434
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,333,416
Number of Sequences: 62578
Number of extensions: 426858
Number of successful extensions: 2700
Number of sequences better than 100.0: 199
Number of HSP's better than 100.0 without gapping: 88
Number of HSP's successfully gapped in prelim test: 111
Number of HSP's that attempted gapping in prelim test: 1995
Number of HSP's gapped (non-prelim): 674
length of query: 286
length of database: 14,973,337
effective HSP length: 98
effective length of query: 188
effective length of database: 8,840,693
effective search space: 1662050284
effective search space used: 1662050284
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 51 (24.3 bits)