Query psy15667
Match_columns 286
No_of_seqs 137 out of 1268
Neff 10.2
Searched_HMMs 46136
Date Fri Aug 16 18:29:55 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy15667.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/15667hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG3513|consensus 100.0 1.3E-34 2.8E-39 265.2 28.1 276 1-286 239-612 (1051)
2 KOG3513|consensus 100.0 4.6E-34 1E-38 261.6 28.1 271 3-286 40-514 (1051)
3 KOG4222|consensus 100.0 8E-28 1.7E-32 219.2 19.4 276 1-285 30-410 (1281)
4 PHA02785 IL-beta-binding prote 100.0 1.7E-26 3.7E-31 196.1 25.3 221 10-279 34-320 (326)
5 KOG4222|consensus 99.9 1E-26 2.2E-31 212.1 15.7 269 5-286 134-509 (1281)
6 KOG4194|consensus 99.9 1.6E-25 3.4E-30 193.1 19.3 238 3-284 504-794 (873)
7 KOG4221|consensus 99.9 1.7E-25 3.6E-30 205.3 17.9 231 2-285 140-415 (1381)
8 KOG4221|consensus 99.9 1.7E-21 3.8E-26 179.2 21.3 236 4-285 43-325 (1381)
9 PHA02826 IL-1 receptor-like pr 99.8 2.4E-19 5.2E-24 143.8 18.4 110 117-274 98-211 (227)
10 KOG4194|consensus 99.8 1.1E-17 2.4E-22 145.1 15.0 147 96-285 532-703 (873)
11 cd05851 Ig3_Contactin-1 Third 99.7 1E-17 2.2E-22 114.9 9.3 81 2-91 1-81 (88)
12 cd05762 Ig8_MLCK Eighth immuno 99.7 1E-16 2.2E-21 112.1 10.1 84 3-91 1-84 (98)
13 cd05892 Ig_Myotilin_C C-termin 99.7 9.9E-17 2.1E-21 106.1 9.5 73 212-285 2-75 (75)
14 cd05747 Ig5_Titin_like M5, fif 99.7 2.2E-16 4.9E-21 109.4 10.5 85 2-91 3-87 (92)
15 cd05745 Ig3_Peroxidasin Third 99.7 1.8E-16 4E-21 105.1 8.7 74 207-285 1-74 (74)
16 cd05852 Ig5_Contactin-1 Fifth 99.7 1.9E-16 4.2E-21 104.3 8.7 73 208-285 1-73 (73)
17 cd04975 Ig4_SCFR_like Fourth i 99.7 2.3E-16 4.9E-21 110.5 9.1 82 205-286 15-100 (101)
18 cd05893 Ig_Palladin_C C-termin 99.7 3.7E-16 7.9E-21 103.5 9.0 73 212-285 2-75 (75)
19 cd05737 Ig_Myomesin_like_C C-t 99.7 9.7E-16 2.1E-20 106.1 10.3 80 205-285 13-92 (92)
20 cd05894 Ig_C5_MyBP-C C5 immuno 99.7 1.3E-15 2.8E-20 103.8 10.7 79 205-285 7-86 (86)
21 cd05737 Ig_Myomesin_like_C C-t 99.7 8.6E-16 1.9E-20 106.4 10.0 79 9-91 8-86 (92)
22 cd05762 Ig8_MLCK Eighth immuno 99.7 1.1E-15 2.4E-20 106.9 10.1 80 205-286 12-91 (98)
23 PF07679 I-set: Immunoglobulin 99.7 1.4E-15 3.1E-20 104.9 10.1 84 3-91 1-84 (90)
24 cd05744 Ig_Myotilin_C_like Imm 99.6 2E-15 4.3E-20 100.2 10.0 73 212-285 2-75 (75)
25 cd04975 Ig4_SCFR_like Fourth i 99.6 1.5E-15 3.3E-20 106.3 9.7 82 11-92 12-94 (101)
26 cd05851 Ig3_Contactin-1 Third 99.6 1.4E-15 3E-20 104.3 9.1 76 205-286 13-88 (88)
27 cd05869 Ig5_NCAM-1 Fifth immun 99.6 2.3E-15 5.1E-20 105.3 10.3 84 2-90 2-90 (97)
28 cd05723 Ig4_Neogenin Fourth im 99.6 2.2E-15 4.7E-20 99.0 9.4 70 211-285 2-71 (71)
29 cd04968 Ig3_Contactin_like Thi 99.6 2.1E-15 4.6E-20 103.6 9.7 81 2-91 1-81 (88)
30 PHA02785 IL-beta-binding prote 99.6 1E-14 2.2E-19 124.2 15.3 137 98-279 60-205 (326)
31 cd05865 Ig1_NCAM-1 First immun 99.6 4.5E-15 9.7E-20 103.1 10.5 81 204-285 11-95 (96)
32 cd05859 Ig4_PDGFR-alpha Fourth 99.6 1.9E-15 4.2E-20 106.0 8.7 81 205-286 15-100 (101)
33 cd05728 Ig4_Contactin-2-like F 99.6 2.8E-15 6.1E-20 102.2 9.2 78 5-91 2-79 (85)
34 cd05857 Ig2_FGFR Second immuno 99.6 6.2E-15 1.3E-19 100.6 10.8 81 204-285 5-85 (85)
35 cd05867 Ig4_L1-CAM_like Fourth 99.6 4.9E-15 1.1E-19 98.8 9.9 74 208-285 1-75 (76)
36 cd05732 Ig5_NCAM-1_like Fifth 99.6 4.1E-15 8.8E-20 104.0 9.9 84 2-91 2-90 (96)
37 cd04969 Ig5_Contactin_like Fif 99.6 3.4E-15 7.4E-20 98.7 8.9 73 208-285 1-73 (73)
38 cd05735 Ig8_DSCAM Eight immuno 99.6 7.7E-15 1.7E-19 100.5 10.9 78 208-286 1-82 (88)
39 cd05863 Ig2_VEGFR-3 Second imm 99.6 3.1E-15 6.7E-20 96.3 8.2 64 212-285 2-65 (67)
40 cd05745 Ig3_Peroxidasin Third 99.6 2.9E-15 6.2E-20 99.3 8.2 69 16-92 1-69 (74)
41 cd05865 Ig1_NCAM-1 First immun 99.6 6E-15 1.3E-19 102.5 10.1 82 5-90 3-88 (96)
42 cd05892 Ig_Myotilin_C C-termin 99.6 5.4E-15 1.2E-19 97.8 9.3 69 20-92 1-70 (75)
43 cd05894 Ig_C5_MyBP-C C5 immuno 99.6 7.9E-15 1.7E-19 100.0 10.1 76 11-91 4-80 (86)
44 cd05748 Ig_Titin_like Immunogl 99.6 8.8E-15 1.9E-19 97.0 10.1 73 211-285 2-74 (74)
45 cd05870 Ig5_NCAM-2 Fifth immun 99.6 6.1E-15 1.3E-19 103.4 9.5 83 2-90 2-91 (98)
46 cd05868 Ig4_NrCAM Fourth immun 99.6 7.6E-15 1.6E-19 97.7 9.3 75 208-285 1-75 (76)
47 cd05852 Ig5_Contactin-1 Fifth 99.6 4.9E-15 1.1E-19 97.6 8.1 67 17-91 1-67 (73)
48 cd07693 Ig1_Robo First immunog 99.6 8E-15 1.7E-19 103.2 9.7 86 2-89 1-90 (100)
49 cd05853 Ig6_Contactin-4 Sixth 99.6 8.2E-15 1.8E-19 98.8 9.0 77 210-286 2-82 (85)
50 cd05746 Ig4_Peroxidasin Fourth 99.6 5.1E-15 1.1E-19 96.7 7.6 68 212-284 2-69 (69)
51 cd05893 Ig_Palladin_C C-termin 99.6 1.1E-14 2.3E-19 96.5 9.1 69 20-92 1-70 (75)
52 cd05728 Ig4_Contactin-2-like F 99.6 8.8E-15 1.9E-19 99.7 9.0 77 203-285 9-85 (85)
53 cd05848 Ig1_Contactin-5 First 99.6 1.7E-14 3.7E-19 100.1 10.3 82 2-90 1-86 (94)
54 cd05730 Ig3_NCAM-1_like Third 99.6 1.2E-14 2.7E-19 101.3 9.6 83 2-91 1-86 (95)
55 cd05891 Ig_M-protein_C C-termi 99.6 2E-14 4.4E-19 99.3 10.5 80 205-285 13-92 (92)
56 cd05849 Ig1_Contactin-1 First 99.6 1.5E-14 3.2E-19 100.1 9.6 81 2-91 1-86 (93)
57 cd05855 Ig_TrkB_d5 Fifth domai 99.6 1.4E-14 2.9E-19 96.3 8.9 69 22-90 3-71 (79)
58 cd05876 Ig3_L1-CAM Third immun 99.6 1E-14 2.2E-19 95.8 8.2 70 212-286 2-71 (71)
59 cd04972 Ig_TrkABC_d4 Fourth do 99.6 2.7E-14 5.9E-19 98.4 10.4 81 6-91 4-84 (90)
60 cd05743 Ig_Perlecan_D2_like Im 99.6 2E-14 4.2E-19 96.3 9.3 71 17-92 1-71 (78)
61 cd05758 Ig5_KIRREL3-like Fifth 99.6 2.8E-14 6.1E-19 100.0 10.5 87 2-90 2-92 (98)
62 cd05859 Ig4_PDGFR-alpha Fourth 99.6 2.1E-14 4.5E-19 100.7 9.8 82 11-92 12-94 (101)
63 cd05763 Ig_1 Subgroup of the i 99.6 1.6E-14 3.5E-19 96.0 8.8 72 212-285 2-74 (75)
64 cd05850 Ig1_Contactin-2 First 99.6 2.6E-14 5.7E-19 99.2 10.2 81 2-91 1-87 (94)
65 cd04978 Ig4_L1-NrCAM_like Four 99.6 2.3E-14 4.9E-19 95.6 9.4 76 208-286 1-76 (76)
66 cd04972 Ig_TrkABC_d4 Fourth do 99.6 3.5E-14 7.7E-19 97.9 10.5 79 205-285 12-90 (90)
67 cd05854 Ig6_Contactin-2 Sixth 99.6 3.5E-14 7.6E-19 96.5 10.2 76 210-286 2-82 (85)
68 cd05891 Ig_M-protein_C C-termi 99.6 2.9E-14 6.3E-19 98.6 9.8 82 7-92 6-87 (92)
69 cd05866 Ig1_NCAM-2 First immun 99.6 2.5E-14 5.3E-19 98.5 9.4 80 5-90 3-83 (92)
70 cd05739 Ig3_RPTP_IIa_LAR_like 99.6 3.1E-14 6.7E-19 92.7 9.2 65 17-92 1-65 (69)
71 cd05855 Ig_TrkB_d5 Fifth domai 99.6 2.6E-14 5.7E-19 94.9 8.8 71 213-284 3-77 (79)
72 cd05867 Ig4_L1-CAM_like Fourth 99.6 3.3E-14 7.1E-19 94.7 9.0 66 17-91 1-69 (76)
73 cd04971 Ig_TrKABC_d5 Fifth dom 99.6 3.9E-14 8.4E-19 95.2 9.4 72 213-285 3-80 (81)
74 cd04976 Ig2_VEGFR Second immun 99.6 2.5E-14 5.3E-19 93.9 7.9 68 212-285 2-69 (71)
75 cd05748 Ig_Titin_like Immunogl 99.5 6.4E-14 1.4E-18 92.8 9.9 68 19-91 1-68 (74)
76 cd05732 Ig5_NCAM-1_like Fifth 99.5 1.3E-13 2.7E-18 96.4 11.9 36 250-285 61-96 (96)
77 cd05744 Ig_Myotilin_C_like Imm 99.5 5.4E-14 1.2E-18 93.3 9.5 69 20-92 1-70 (75)
78 cd05723 Ig4_Neogenin Fourth im 99.5 6.2E-14 1.3E-18 92.0 9.6 66 19-92 1-66 (71)
79 cd05743 Ig_Perlecan_D2_like Im 99.5 5.6E-14 1.2E-18 94.1 9.6 76 208-285 1-76 (78)
80 cd05864 Ig2_VEGFR-2 Second imm 99.5 2.4E-14 5.2E-19 93.3 7.5 66 212-284 2-67 (70)
81 cd04968 Ig3_Contactin_like Thi 99.5 5.7E-14 1.2E-18 96.4 9.6 76 205-286 13-88 (88)
82 cd05735 Ig8_DSCAM Eight immuno 99.5 7.8E-14 1.7E-18 95.5 10.3 73 17-90 1-74 (88)
83 cd04973 Ig1_FGFR First immunog 99.5 4.2E-14 9.1E-19 94.9 8.7 75 204-285 5-79 (79)
84 cd05749 Ig2_Tyro3_like Second 99.5 3.5E-14 7.7E-19 95.2 8.2 73 5-90 1-74 (81)
85 PF07679 I-set: Immunoglobulin 99.5 5.8E-14 1.3E-18 96.8 9.6 79 205-285 12-90 (90)
86 cd05747 Ig5_Titin_like M5, fif 99.5 7.9E-14 1.7E-18 96.5 10.2 78 205-284 15-92 (92)
87 cd05730 Ig3_NCAM-1_like Third 99.5 5E-14 1.1E-18 98.2 9.1 77 205-285 15-92 (95)
88 cd04969 Ig5_Contactin_like Fif 99.5 5.1E-14 1.1E-18 93.1 8.6 68 17-92 1-68 (73)
89 cd05760 Ig2_PTK7 Second immuno 99.5 5.5E-14 1.2E-18 93.8 8.8 70 212-285 2-72 (77)
90 cd04974 Ig3_FGFR Third immunog 99.5 6.3E-14 1.4E-18 96.5 9.0 36 251-286 55-90 (90)
91 cd05738 Ig2_RPTP_IIa_LAR_like 99.5 6.8E-14 1.5E-18 92.7 8.8 72 212-286 2-74 (74)
92 cd05725 Ig3_Robo Third immunog 99.5 5.6E-14 1.2E-18 91.8 8.3 68 212-285 2-69 (69)
93 cd05764 Ig_2 Subgroup of the i 99.5 8.6E-14 1.9E-18 92.2 9.2 73 208-285 1-74 (74)
94 cd05857 Ig2_FGFR Second immuno 99.5 9.3E-14 2E-18 94.7 9.6 76 12-91 4-79 (85)
95 cd04973 Ig1_FGFR First immunog 99.5 5.1E-14 1.1E-18 94.5 8.1 71 10-90 2-72 (79)
96 cd05868 Ig4_NrCAM Fourth immun 99.5 8.3E-14 1.8E-18 92.7 8.9 70 17-92 1-70 (76)
97 cd05736 Ig2_Follistatin_like S 99.5 9.5E-14 2.1E-18 92.5 9.2 73 212-286 2-74 (76)
98 cd05739 Ig3_RPTP_IIa_LAR_like 99.5 9.9E-14 2.1E-18 90.3 9.1 69 208-284 1-69 (69)
99 cd05863 Ig2_VEGFR-3 Second imm 99.5 3.2E-14 7E-19 91.6 6.5 57 20-89 1-57 (67)
100 cd05870 Ig5_NCAM-2 Fifth immun 99.5 2E-13 4.3E-18 95.6 11.2 36 250-285 63-98 (98)
101 cd05746 Ig4_Peroxidasin Fourth 99.5 4.7E-14 1E-18 92.1 7.4 64 20-91 1-64 (69)
102 cd05726 Ig4_Robo Fhird immunog 99.5 9.3E-14 2E-18 95.7 9.1 74 208-286 1-82 (90)
103 cd04977 Ig1_NCAM-1_like First 99.5 1.3E-13 2.9E-18 95.2 9.5 79 5-88 3-82 (92)
104 cd05858 Ig3_FGFR-2 Third immun 99.5 1.3E-13 2.9E-18 95.0 9.5 35 251-285 55-89 (90)
105 cd05724 Ig2_Robo Second immuno 99.5 1.4E-13 3E-18 94.1 9.6 77 205-285 8-86 (86)
106 cd04971 Ig_TrKABC_d5 Fifth dom 99.5 1.2E-13 2.7E-18 92.7 9.0 70 22-91 3-74 (81)
107 cd05731 Ig3_L1-CAM_like Third 99.5 7.1E-14 1.5E-18 91.8 7.8 70 212-286 2-71 (71)
108 cd05869 Ig5_NCAM-1 Fifth immun 99.5 2E-13 4.3E-18 95.5 10.1 36 250-285 62-97 (97)
109 cd05740 Ig_CEACAM_D4 Fourth im 99.5 1.6E-13 3.6E-18 94.4 9.4 79 3-90 2-82 (91)
110 cd05864 Ig2_VEGFR-2 Second imm 99.5 6.5E-14 1.4E-18 91.2 6.9 61 20-90 1-61 (70)
111 cd04976 Ig2_VEGFR Second immun 99.5 7.9E-14 1.7E-18 91.4 7.3 61 20-89 1-61 (71)
112 KOG3515|consensus 99.5 3E-13 6.5E-18 122.5 13.4 271 2-283 7-393 (741)
113 cd04970 Ig6_Contactin_like Six 99.5 2.1E-13 4.5E-18 93.0 9.4 76 210-286 2-82 (85)
114 cd05856 Ig2_FGFRL1-like Second 99.5 1.7E-13 3.6E-18 92.7 8.9 77 205-285 6-82 (82)
115 cd05750 Ig_Pro_neuregulin Immu 99.5 1.9E-13 4.1E-18 90.8 8.9 71 212-282 2-74 (75)
116 cd05724 Ig2_Robo Second immuno 99.5 1.8E-13 3.9E-18 93.5 8.9 75 8-90 2-78 (86)
117 cd05722 Ig1_Neogenin First imm 99.5 1.6E-13 3.5E-18 95.6 8.4 79 4-90 1-87 (95)
118 cd05866 Ig1_NCAM-2 First immun 99.5 3.9E-13 8.6E-18 92.4 10.0 78 205-285 12-91 (92)
119 cd04978 Ig4_L1-NrCAM_like Four 99.5 1.9E-13 4.1E-18 91.1 8.2 69 17-91 1-69 (76)
120 cd05752 Ig1_FcgammaR_like Frst 99.5 1.3E-13 2.9E-18 91.8 7.3 67 3-85 1-68 (78)
121 cd05773 Ig8_hNephrin_like Eigh 99.5 3.4E-13 7.3E-18 96.2 9.7 88 2-90 4-97 (109)
122 cd05740 Ig_CEACAM_D4 Fourth im 99.5 5.9E-13 1.3E-17 91.6 10.1 77 204-286 14-91 (91)
123 cd04967 Ig1_Contactin First Ig 99.5 7.9E-13 1.7E-17 91.3 10.2 80 3-91 2-87 (91)
124 cd05876 Ig3_L1-CAM Third immun 99.5 3.1E-13 6.8E-18 88.7 7.6 64 20-91 1-64 (71)
125 cd05760 Ig2_PTK7 Second immuno 99.5 3.7E-13 8E-18 89.8 8.0 64 20-90 1-65 (77)
126 cd04977 Ig1_NCAM-1_like First 99.5 7E-13 1.5E-17 91.6 9.6 79 205-285 12-92 (92)
127 cd05765 Ig_3 Subgroup of the i 99.5 4.5E-13 9.7E-18 90.4 8.3 36 250-285 46-81 (81)
128 cd05856 Ig2_FGFRL1-like Second 99.5 4.5E-13 9.7E-18 90.6 8.3 73 12-91 4-76 (82)
129 cd05848 Ig1_Contactin-5 First 99.4 1E-12 2.3E-17 91.1 9.9 69 207-279 18-87 (94)
130 cd05895 Ig_Pro_neuregulin-1 Im 99.4 9.5E-13 2.1E-17 87.7 9.1 71 212-282 2-75 (76)
131 cd05738 Ig2_RPTP_IIa_LAR_like 99.4 5.2E-13 1.1E-17 88.4 7.7 62 20-89 1-64 (74)
132 cd07702 Ig2_VEGFR-1 Second imm 99.4 3.9E-13 8.5E-18 87.7 6.6 58 20-86 1-59 (72)
133 cd05756 Ig1_IL1R_like First im 99.4 6.7E-13 1.4E-17 91.9 7.9 78 205-285 11-94 (94)
134 cd05725 Ig3_Robo Third immunog 99.4 6E-13 1.3E-17 86.8 7.3 63 20-91 1-63 (69)
135 cd05873 Ig_Sema4D_like Immunog 99.4 5.3E-13 1.1E-17 90.3 7.1 69 8-86 2-71 (87)
136 cd05773 Ig8_hNephrin_like Eigh 99.4 2.5E-12 5.3E-17 91.7 10.8 79 207-286 22-105 (109)
137 cd05750 Ig_Pro_neuregulin Immu 99.4 1.1E-12 2.4E-17 87.1 8.3 70 20-91 1-71 (75)
138 cd05854 Ig6_Contactin-2 Sixth 99.4 1.1E-12 2.4E-17 89.1 8.4 70 18-91 1-75 (85)
139 cd05764 Ig_2 Subgroup of the i 99.4 1.5E-12 3.3E-17 86.2 8.6 67 17-91 1-68 (74)
140 cd05722 Ig1_Neogenin First imm 99.4 2.5E-12 5.4E-17 89.5 9.6 78 205-285 11-95 (95)
141 cd05898 Ig5_KIRREL3 Fifth immu 99.4 3.1E-12 6.7E-17 88.5 9.8 87 2-90 2-92 (98)
142 cd05726 Ig4_Robo Fhird immunog 99.4 1.3E-12 2.8E-17 90.0 7.8 67 17-91 1-75 (90)
143 cd05733 Ig6_L1-CAM_like Sixth 99.4 2.1E-12 4.5E-17 86.1 8.6 66 212-279 2-71 (77)
144 cd05733 Ig6_L1-CAM_like Sixth 99.4 1.2E-12 2.7E-17 87.3 7.4 64 20-90 1-70 (77)
145 cd05763 Ig_1 Subgroup of the i 99.4 1.2E-12 2.7E-17 86.9 7.4 65 20-91 1-68 (75)
146 cd07702 Ig2_VEGFR-1 Second imm 99.4 1.9E-12 4.2E-17 84.5 7.9 67 212-283 2-68 (72)
147 cd07693 Ig1_Robo First immunog 99.4 4.7E-12 1E-16 88.9 10.6 80 205-285 13-99 (100)
148 cd05850 Ig1_Contactin-2 First 99.4 4.8E-12 1E-16 87.8 10.4 73 207-283 18-92 (94)
149 cd04974 Ig3_FGFR Third immunog 99.4 1.6E-12 3.5E-17 89.5 7.9 74 17-90 1-82 (90)
150 cd05731 Ig3_L1-CAM_like Third 99.4 1.2E-12 2.6E-17 86.0 6.9 64 20-91 1-64 (71)
151 cd05849 Ig1_Contactin-1 First 99.4 4.1E-12 8.8E-17 87.8 9.7 70 208-283 19-91 (93)
152 cd05858 Ig3_FGFR-2 Third immun 99.4 2.1E-12 4.6E-17 88.9 7.9 74 17-90 1-82 (90)
153 cd05729 Ig2_FGFR_like Second i 99.4 7.8E-12 1.7E-16 85.0 10.7 80 205-285 6-85 (85)
154 cd05758 Ig5_KIRREL3-like Fifth 99.4 1.1E-11 2.4E-16 86.7 11.7 78 205-283 13-97 (98)
155 cd05742 Ig1_VEGFR_like First i 99.4 2.6E-12 5.6E-17 87.3 8.0 74 17-90 1-76 (84)
156 cd05757 Ig2_IL1R_like Second i 99.4 2.5E-12 5.3E-17 88.5 7.6 74 207-285 9-86 (92)
157 cd05742 Ig1_VEGFR_like First i 99.4 3.2E-12 6.9E-17 86.8 8.1 36 250-285 48-83 (84)
158 cd05874 Ig6_NrCAM Sixth immuno 99.4 3.2E-12 7E-17 85.1 7.9 65 20-91 1-71 (77)
159 cd05754 Ig3_Perlecan_like Thir 99.4 3.3E-12 7.1E-17 87.0 8.1 72 205-283 13-84 (85)
160 cd05874 Ig6_NrCAM Sixth immuno 99.4 7.8E-12 1.7E-16 83.2 9.3 67 212-280 2-72 (77)
161 cd05749 Ig2_Tyro3_like Second 99.4 6.6E-12 1.4E-16 84.2 8.7 69 205-283 10-80 (81)
162 cd05875 Ig6_hNeurofascin_like 99.4 5E-12 1.1E-16 84.2 8.0 65 20-91 1-71 (77)
163 cd05756 Ig1_IL1R_like First im 99.3 2.7E-12 5.9E-17 88.8 6.9 73 10-91 7-88 (94)
164 cd04970 Ig6_Contactin_like Six 99.3 7.1E-12 1.5E-16 85.3 8.4 69 18-90 1-74 (85)
165 cd05736 Ig2_Follistatin_like S 99.3 5.3E-12 1.1E-16 84.0 7.3 66 20-90 1-66 (76)
166 cd05875 Ig6_hNeurofascin_like 99.3 1.2E-11 2.6E-16 82.4 8.8 67 212-280 2-72 (77)
167 cd05853 Ig6_Contactin-4 Sixth 99.3 8.1E-12 1.7E-16 84.2 7.7 70 18-91 1-75 (85)
168 cd05771 IgC_Tapasin_R Tapasin- 99.3 5.6E-11 1.2E-15 88.8 13.0 62 118-180 2-64 (139)
169 cd05734 Ig7_DSCAM Seventh immu 99.3 9.7E-12 2.1E-16 83.4 8.0 36 250-285 43-79 (79)
170 cd05765 Ig_3 Subgroup of the i 99.3 1.1E-11 2.5E-16 83.5 8.2 71 17-91 1-75 (81)
171 cd05882 Ig1_Necl-1 First (N-te 99.3 1.7E-11 3.8E-16 84.8 9.2 72 9-84 4-83 (95)
172 cd05754 Ig3_Perlecan_like Thir 99.3 1E-11 2.2E-16 84.6 7.9 74 7-91 6-80 (85)
173 cd05882 Ig1_Necl-1 First (N-te 99.3 5.2E-11 1.1E-15 82.4 11.1 90 163-285 6-95 (95)
174 cd05752 Ig1_FcgammaR_like Frst 99.3 7.4E-12 1.6E-16 83.4 6.4 68 204-285 11-78 (78)
175 cd04967 Ig1_Contactin First Ig 99.3 3E-11 6.5E-16 83.4 9.2 69 207-279 18-87 (91)
176 cd05895 Ig_Pro_neuregulin-1 Im 99.3 2.3E-11 5E-16 80.9 8.2 67 20-91 1-72 (76)
177 cd05729 Ig2_FGFR_like Second i 99.3 5.3E-11 1.2E-15 80.9 10.1 75 13-91 5-79 (85)
178 PHA02826 IL-1 receptor-like pr 99.3 3.3E-11 7.1E-16 96.9 10.2 128 9-140 29-211 (227)
179 cd05861 Ig1_PDGFR-alphabeta Fr 99.3 5E-11 1.1E-15 80.8 9.2 70 17-87 1-70 (84)
180 cd07701 Ig1_Necl-3 First (N-te 99.3 2.8E-11 6.2E-16 83.9 8.1 75 8-86 3-85 (95)
181 cd05898 Ig5_KIRREL3 Fifth immu 99.3 6.8E-11 1.5E-15 81.9 9.8 79 205-283 13-97 (98)
182 cd05861 Ig1_PDGFR-alphabeta Fr 99.3 8E-11 1.7E-15 79.8 9.8 77 208-285 1-82 (84)
183 cd05727 Ig2_Contactin-2-like S 99.3 1.7E-11 3.7E-16 84.2 6.5 71 204-277 14-86 (96)
184 cd05753 Ig2_FcgammaR_like Seco 99.3 2.6E-11 5.7E-16 81.9 7.3 71 6-89 3-74 (83)
185 cd04979 Ig_Semaphorin_C Immuno 99.2 1.9E-11 4.1E-16 84.0 6.6 69 9-87 3-75 (89)
186 cd05873 Ig_Sema4D_like Immunog 99.2 9.1E-11 2E-15 79.4 8.8 64 204-274 7-71 (87)
187 cd05734 Ig7_DSCAM Seventh immu 99.2 1.7E-11 3.8E-16 82.2 5.3 62 20-89 1-70 (79)
188 cd07701 Ig1_Necl-3 First (N-te 99.2 1.1E-10 2.4E-15 80.9 9.5 90 163-285 6-95 (95)
189 cd05753 Ig2_FcgammaR_like Seco 99.2 8.8E-11 1.9E-15 79.3 7.7 65 204-277 10-74 (83)
190 smart00408 IGc2 Immunoglobulin 99.2 1.4E-10 2.9E-15 73.6 8.1 63 16-87 1-63 (63)
191 cd07690 Ig1_CD4 First immunogl 99.2 7.6E-11 1.6E-15 81.2 7.2 78 12-91 2-93 (94)
192 cd05845 Ig2_L1-CAM_like Second 99.2 5.2E-11 1.1E-15 81.6 6.2 79 2-88 2-84 (95)
193 cd04979 Ig_Semaphorin_C Immuno 99.2 2.3E-10 5E-15 78.6 8.6 76 205-285 8-86 (89)
194 cd05727 Ig2_Contactin-2-like S 99.2 7.4E-11 1.6E-15 81.0 5.9 70 12-88 13-85 (96)
195 cd05885 Ig2_Necl-4 Second immu 99.2 4.7E-10 1E-14 74.3 9.4 66 211-276 2-68 (80)
196 cd05862 Ig1_VEGFR First immuno 99.2 2.6E-10 5.6E-15 77.6 8.5 36 250-285 49-84 (86)
197 cd05757 Ig2_IL1R_like Second i 99.2 7.1E-11 1.5E-15 81.2 5.7 70 11-89 4-78 (92)
198 cd05717 Ig1_Necl-1-3_like Firs 99.1 1.4E-09 3.1E-14 75.5 11.3 91 162-285 5-95 (95)
199 PF00047 ig: Immunoglobulin do 99.1 2.4E-10 5.3E-15 73.2 6.1 63 17-82 1-64 (64)
200 cd05897 Ig2_IL1R2_like Second 99.1 8.4E-10 1.8E-14 75.9 7.7 70 206-277 8-81 (95)
201 smart00408 IGc2 Immunoglobulin 99.1 1.1E-09 2.3E-14 69.4 7.7 63 207-275 1-63 (63)
202 PF13895 Ig_2: Immunoglobulin 99.1 8E-10 1.7E-14 74.0 7.4 69 3-88 2-70 (80)
203 PF00047 ig: Immunoglobulin do 99.1 5.5E-10 1.2E-14 71.5 6.2 63 208-270 1-64 (64)
204 cd05717 Ig1_Necl-1-3_like Firs 99.0 1.5E-09 3.3E-14 75.4 8.7 74 9-86 4-85 (95)
205 cd05845 Ig2_L1-CAM_like Second 99.0 6.1E-10 1.3E-14 76.4 6.4 69 205-277 15-85 (95)
206 cd05862 Ig1_VEGFR First immuno 99.0 1.5E-09 3.3E-14 73.8 8.1 71 17-89 1-76 (86)
207 cd05871 Ig_Semaphorin_classIII 99.0 2.3E-09 4.9E-14 73.7 8.8 74 205-285 8-88 (91)
208 cd05872 Ig_Sema4B_like Immunog 99.0 6.4E-10 1.4E-14 74.8 5.8 65 10-84 4-68 (85)
209 cd05860 Ig4_SCFR Fourth immuno 99.0 3.2E-09 6.9E-14 73.1 9.1 38 249-286 63-100 (101)
210 cd05860 Ig4_SCFR Fourth immuno 99.0 3.4E-09 7.5E-14 72.9 9.2 82 11-92 12-94 (101)
211 smart00410 IG_like Immunoglobu 99.0 1.3E-08 2.8E-13 68.5 11.1 80 205-286 6-86 (86)
212 smart00409 IG Immunoglobulin. 99.0 1.3E-08 2.8E-13 68.5 11.1 80 205-286 6-86 (86)
213 cd05896 Ig1_IL1RAPL-1_like Fir 99.0 3E-09 6.4E-14 73.5 7.6 63 223-285 40-104 (104)
214 PF13927 Ig_3: Immunoglobulin 99.0 2.2E-09 4.8E-14 70.7 6.6 74 2-84 1-75 (75)
215 cd05881 Ig1_Necl-2 First (N-te 99.0 8E-09 1.7E-13 71.1 9.1 72 10-85 5-84 (95)
216 PF13895 Ig_2: Immunoglobulin 98.9 3.4E-09 7.4E-14 70.9 7.2 70 204-285 10-80 (80)
217 cd05897 Ig2_IL1R2_like Second 98.9 2.1E-09 4.6E-14 73.9 5.9 71 11-88 4-80 (95)
218 cd05871 Ig_Semaphorin_classIII 98.9 2.6E-09 5.7E-14 73.4 6.4 64 11-84 5-74 (91)
219 KOG3515|consensus 98.9 1.3E-08 2.8E-13 92.9 12.6 271 10-285 105-492 (741)
220 smart00409 IG Immunoglobulin. 98.9 1.4E-08 3.1E-13 68.3 9.3 73 11-88 3-76 (86)
221 smart00410 IG_like Immunoglobu 98.9 1.4E-08 3.1E-13 68.3 9.3 73 11-88 3-76 (86)
222 cd05759 Ig2_KIRREL3-like Secon 98.9 1.5E-08 3.2E-13 68.3 9.2 74 211-284 2-79 (82)
223 cd05751 Ig1_LILRB1_like First 98.9 7.2E-09 1.6E-13 71.3 7.8 73 3-85 3-75 (91)
224 cd07690 Ig1_CD4 First immunogl 98.9 8E-09 1.7E-13 71.1 7.4 29 250-278 64-92 (94)
225 cd05885 Ig2_Necl-4 Second immu 98.9 1.4E-08 3.1E-13 67.2 7.5 63 19-87 1-67 (80)
226 cd05881 Ig1_Necl-2 First (N-te 98.9 1.1E-07 2.3E-12 65.5 12.0 80 162-273 5-84 (95)
227 cd05759 Ig2_KIRREL3-like Secon 98.9 1.9E-08 4E-13 67.8 8.1 65 19-86 1-69 (82)
228 cd05713 Ig_MOG_like Immunoglob 98.8 6.1E-08 1.3E-12 68.0 10.7 88 169-285 1-99 (100)
229 cd05872 Ig_Sema4B_like Immunog 98.8 2.7E-08 6E-13 66.8 7.6 73 205-285 8-80 (85)
230 cd04983 IgV_TCR_alpha_like Imm 98.8 3.5E-08 7.5E-13 70.4 8.4 77 7-86 3-93 (109)
231 cd05896 Ig1_IL1RAPL-1_like Fir 98.8 2.6E-08 5.7E-13 68.8 6.3 74 10-86 8-93 (104)
232 cd05877 Ig_LP_like Immunoglobu 98.8 9.3E-08 2E-12 67.8 9.3 37 250-286 67-103 (106)
233 cd05899 IgV_TCR_beta Immunoglo 98.7 5E-08 1.1E-12 69.7 7.8 75 6-85 2-94 (110)
234 cd05883 Ig2_Necl-2 Second immu 98.7 1.3E-07 2.7E-12 63.0 8.3 75 211-285 2-79 (82)
235 cd04980 IgV_L_kappa Immunoglob 98.7 1.5E-07 3.2E-12 66.7 8.1 75 5-84 3-92 (106)
236 cd05714 Ig_CSPGs_LP Immunoglob 98.7 4.3E-07 9.3E-12 64.4 10.4 38 249-286 66-103 (106)
237 cd00099 IgV Immunoglobulin var 98.6 1.9E-07 4.2E-12 66.0 7.8 72 13-87 2-91 (105)
238 cd05751 Ig1_LILRB1_like First 98.6 2.2E-07 4.7E-12 63.9 7.5 65 203-273 11-75 (91)
239 cd05900 Ig_Aggrecan Immunoglob 98.6 9.3E-07 2E-11 63.0 10.7 38 249-286 72-109 (112)
240 cd04983 IgV_TCR_alpha_like Imm 98.6 1.5E-06 3.2E-11 61.9 11.6 86 163-274 7-93 (109)
241 cd05718 Ig1_PVR_like First imm 98.6 5.8E-07 1.3E-11 62.6 9.2 36 250-285 61-97 (98)
242 cd05879 Ig_P0 Immunoglobulin ( 98.6 4.6E-07 9.9E-12 65.0 8.8 77 7-86 3-103 (116)
243 cd04982 IgV_TCR_gamma Immunogl 98.6 2.9E-07 6.2E-12 66.4 7.6 75 7-84 3-98 (116)
244 cd00098 IgC Immunoglobulin Con 98.6 2.7E-07 5.8E-12 64.0 7.1 71 15-87 11-86 (95)
245 cd05715 Ig_P0-like Immunoglobu 98.5 2.6E-06 5.6E-11 61.4 11.9 36 250-285 79-116 (116)
246 cd05774 Ig_CEACAM_D1 First imm 98.5 1.1E-06 2.3E-11 61.9 9.5 36 250-285 69-105 (105)
247 cd05879 Ig_P0 Immunoglobulin ( 98.5 4.4E-06 9.5E-11 59.9 12.3 99 162-285 6-116 (116)
248 cd05880 Ig_EVA1 Immunoglobulin 98.5 2.4E-06 5.1E-11 61.4 10.9 27 250-276 78-104 (115)
249 cd05887 Ig1_Nectin-3_like Firs 98.5 1.4E-06 3.1E-11 60.1 9.2 36 250-285 59-95 (96)
250 cd05711 Ig_FcalphaRI Immunoglo 98.5 9.4E-07 2E-11 61.1 7.9 75 3-84 2-76 (94)
251 cd05888 Ig1_Nectin-4_like Frst 98.5 3.5E-06 7.6E-11 58.9 10.9 37 250-286 63-100 (100)
252 cd05755 Ig2_ICAM-1_like Second 98.5 1.9E-06 4.2E-11 59.7 9.0 81 2-86 1-85 (100)
253 cd05878 Ig_Aggrecan_like Immun 98.5 6.1E-06 1.3E-10 58.8 11.9 37 249-285 70-106 (110)
254 cd05714 Ig_CSPGs_LP Immunoglob 98.4 9.6E-07 2.1E-11 62.6 7.4 71 16-86 1-91 (106)
255 cd05899 IgV_TCR_beta Immunoglo 98.4 2.7E-06 5.9E-11 60.6 9.7 89 163-274 7-95 (110)
256 cd05880 Ig_EVA1 Immunoglobulin 98.4 1.8E-06 3.9E-11 62.1 8.7 79 8-86 4-102 (115)
257 cd05886 Ig1_Nectin-1_like Firs 98.4 3.8E-06 8.2E-11 58.4 9.8 36 250-285 62-98 (99)
258 cd05741 Ig_CEACAM_D1_like Firs 98.4 6.6E-07 1.4E-11 61.6 6.0 68 17-88 1-82 (92)
259 cd00099 IgV Immunoglobulin var 98.4 1.7E-06 3.6E-11 61.1 8.1 86 165-275 2-91 (105)
260 cd05902 Ig_Neurocan Immunoglob 98.4 2.9E-06 6.3E-11 60.2 9.1 38 249-286 70-107 (110)
261 cd05761 Ig2_Necl-1-4_like Seco 98.4 1.7E-06 3.6E-11 58.2 7.4 64 19-86 1-68 (82)
262 cd05774 Ig_CEACAM_D1 First imm 98.4 1.4E-06 3E-11 61.3 7.1 73 7-87 3-94 (105)
263 cd05715 Ig_P0-like Immunoglobu 98.4 2.3E-06 5E-11 61.7 8.4 78 8-85 4-102 (116)
264 cd05846 Ig1_MRC-OX-2_like Firs 98.4 3.3E-06 7.1E-11 58.8 8.9 37 250-286 60-97 (97)
265 cd04984 IgV_L_lambda Immunoglo 98.4 2.2E-06 4.8E-11 59.7 8.1 67 13-84 2-84 (98)
266 cd05883 Ig2_Necl-2 Second immu 98.4 2.5E-06 5.5E-11 56.7 7.8 64 20-86 2-67 (82)
267 cd05761 Ig2_Necl-1-4_like Seco 98.4 3.3E-06 7.2E-11 56.7 8.6 65 211-276 2-70 (82)
268 cd05775 Ig_SLAM-CD84_like_N N- 98.4 2.6E-06 5.7E-11 59.2 8.0 36 250-285 60-96 (97)
269 cd04982 IgV_TCR_gamma Immunogl 98.4 5.6E-06 1.2E-10 59.6 10.0 85 163-272 7-98 (116)
270 PF13927 Ig_3: Immunoglobulin 98.4 2.9E-07 6.2E-12 60.4 2.9 58 211-272 18-75 (75)
271 cd04980 IgV_L_kappa Immunoglob 98.3 6.4E-06 1.4E-10 58.3 9.4 84 163-273 9-93 (106)
272 cd07706 IgV_TCR_delta Immunogl 98.3 4.6E-06 1E-10 60.1 8.6 77 5-84 2-93 (116)
273 cd05713 Ig_MOG_like Immunoglob 98.3 3.3E-06 7.2E-11 59.1 7.6 70 17-88 1-90 (100)
274 cd07705 Ig2_Necl-1 Second immu 98.3 7.8E-06 1.7E-10 55.0 9.0 64 211-275 2-70 (83)
275 cd05884 Ig2_Necl-3 Second immu 98.3 4.6E-06 1E-10 56.1 7.7 64 20-86 2-69 (83)
276 cd07705 Ig2_Necl-1 Second immu 98.3 5.3E-06 1.1E-10 55.8 8.0 64 20-86 2-69 (83)
277 cd05877 Ig_LP_like Immunoglobu 98.3 4E-06 8.8E-11 59.3 7.8 69 16-88 1-93 (106)
278 cd05741 Ig_CEACAM_D1_like Firs 98.3 3.9E-06 8.4E-11 57.7 7.5 35 250-284 56-91 (92)
279 cd05771 IgC_Tapasin_R Tapasin- 98.3 1.3E-05 2.8E-10 59.7 10.4 85 2-86 38-131 (139)
280 cd05755 Ig2_ICAM-1_like Second 98.3 5.3E-06 1.1E-10 57.5 7.5 73 203-276 11-87 (100)
281 cd07698 IgC_MHC_I_alpha3 Class 98.3 1.4E-05 3E-10 55.1 9.7 79 2-85 2-82 (93)
282 cd05900 Ig_Aggrecan Immunoglob 98.2 8.2E-06 1.8E-10 58.1 7.5 68 16-85 1-96 (112)
283 cd05901 Ig_Versican Immunoglob 98.2 4.8E-05 1E-09 54.2 11.3 38 249-286 77-114 (117)
284 cd05770 IgC_beta2m Class I maj 98.2 3.9E-05 8.5E-10 52.6 10.5 80 2-85 1-82 (93)
285 PHA02987 Ig domain OX-2-like p 98.2 4.5E-06 9.7E-11 63.6 6.3 70 10-83 23-105 (189)
286 cd07700 IgV_CD8_beta Immunoglo 98.2 9E-06 2E-10 57.6 7.6 68 13-83 2-92 (107)
287 cd04984 IgV_L_lambda Immunoglo 98.2 2.3E-05 4.9E-10 54.6 9.1 81 166-273 3-85 (98)
288 cd05889 Ig1_DNAM-1_like First 98.2 2.7E-05 5.9E-10 53.7 9.3 34 250-283 59-93 (96)
289 PHA02987 Ig domain OX-2-like p 98.2 2.1E-05 4.5E-10 60.0 9.2 92 164-285 25-121 (189)
290 PHA03376 BARF1; Provisional 98.2 0.00015 3.2E-09 55.3 13.7 74 116-190 86-160 (221)
291 cd00098 IgC Immunoglobulin Con 98.2 1.2E-05 2.5E-10 55.6 7.4 70 207-276 12-87 (95)
292 cd05884 Ig2_Necl-3 Second immu 98.1 1.3E-05 2.9E-10 53.9 7.2 66 211-276 2-71 (83)
293 cd05846 Ig1_MRC-OX-2_like Firs 98.1 8.9E-06 1.9E-10 56.5 6.6 68 17-84 1-82 (97)
294 cd05775 Ig_SLAM-CD84_like_N N- 98.1 4E-06 8.6E-11 58.3 4.8 71 15-88 2-86 (97)
295 cd07706 IgV_TCR_delta Immunogl 98.1 6E-05 1.3E-09 54.2 11.1 85 163-273 8-94 (116)
296 cd05718 Ig1_PVR_like First imm 98.1 1E-05 2.3E-10 56.2 6.8 63 18-84 1-83 (98)
297 cd05716 Ig_pIgR Immunoglobulin 98.1 7.9E-06 1.7E-10 56.9 6.0 71 12-85 2-86 (98)
298 cd05767 IgC_MHC_II_alpha Class 98.1 8E-05 1.7E-09 51.2 10.6 79 2-85 1-83 (94)
299 cd07694 Ig2_CD4 Second immunog 98.1 3.8E-05 8.2E-10 51.2 8.5 75 203-284 9-84 (88)
300 cd00096 Ig Immunoglobulin doma 98.1 2.9E-05 6.3E-10 49.4 7.8 66 20-86 1-66 (74)
301 cd05769 IgC_TCR_beta T cell re 98.1 3.6E-05 7.8E-10 55.0 8.6 84 1-85 1-91 (115)
302 cd05716 Ig_pIgR Immunoglobulin 98.1 2.5E-05 5.4E-10 54.4 7.8 26 249-274 62-87 (98)
303 cd05720 Ig_CD8_alpha Immunoglo 98.1 2E-05 4.3E-10 55.5 7.2 67 13-84 2-90 (104)
304 cd05766 IgC_MHC_II_beta Class 98.0 0.0001 2.2E-09 50.8 10.3 71 12-85 9-82 (94)
305 cd05711 Ig_FcalphaRI Immunoglo 98.0 3.7E-05 8E-10 53.1 8.0 66 203-271 10-75 (94)
306 PF07686 V-set: Immunoglobulin 98.0 1.5E-05 3.2E-10 56.8 6.0 75 8-85 7-101 (114)
307 cd07699 IgC_L Immunoglobulin C 98.0 4.4E-05 9.5E-10 53.3 8.1 83 2-85 1-88 (100)
308 PF07686 V-set: Immunoglobulin 98.0 0.0001 2.2E-09 52.4 10.0 98 163-285 10-114 (114)
309 PF08205 C2-set_2: CD80-like C 98.0 2.5E-05 5.4E-10 53.3 6.3 67 17-86 14-84 (89)
310 cd05878 Ig_Aggrecan_like Immun 98.0 3.5E-05 7.6E-10 54.9 7.3 70 16-85 1-94 (110)
311 cd05902 Ig_Neurocan Immunoglob 97.9 3.8E-05 8.3E-10 54.5 6.7 70 16-85 1-94 (110)
312 cd00096 Ig Immunoglobulin doma 97.9 6.8E-05 1.5E-09 47.6 7.5 64 212-276 2-68 (74)
313 cd05901 Ig_Versican Immunoglob 97.9 7.9E-05 1.7E-09 53.1 7.6 24 63-86 79-102 (117)
314 cd07700 IgV_CD8_beta Immunoglo 97.9 0.00011 2.3E-09 52.1 8.2 23 250-272 71-93 (107)
315 cd04981 IgV_H Immunoglobulin ( 97.9 8.3E-05 1.8E-09 53.6 7.6 74 8-84 3-97 (117)
316 cd05712 Ig_Siglec_N Immunoglob 97.9 8.8E-05 1.9E-09 53.6 7.6 74 8-84 5-101 (119)
317 cd05889 Ig1_DNAM-1_like First 97.9 5E-05 1.1E-09 52.4 6.0 68 18-85 1-82 (96)
318 cd05768 IgC_CH4 CH4 domain (fo 97.9 8.2E-05 1.8E-09 52.1 7.2 79 7-85 6-90 (102)
319 cd07694 Ig2_CD4 Second immunog 97.8 8.3E-05 1.8E-09 49.6 6.1 62 12-84 9-72 (88)
320 cd05712 Ig_Siglec_N Immunoglob 97.8 0.00064 1.4E-08 49.1 11.4 25 249-273 78-102 (119)
321 cd05720 Ig_CD8_alpha Immunoglo 97.8 0.00022 4.9E-09 50.1 8.3 24 249-272 67-90 (104)
322 smart00407 IGc1 Immunoglobulin 97.7 0.00029 6.3E-09 46.3 8.1 65 19-85 1-70 (75)
323 cd05888 Ig1_Nectin-4_like Frst 97.7 0.00017 3.6E-09 50.4 7.1 22 63-84 64-85 (100)
324 cd05887 Ig1_Nectin-3_like Firs 97.7 0.00013 2.9E-09 50.3 6.1 63 18-84 1-81 (96)
325 cd07692 Ig_CD3_epsilon Immunog 97.7 0.00027 5.9E-09 44.2 6.4 58 208-285 7-64 (65)
326 cd05772 IgC_SIRP Signal-regula 97.6 0.00087 1.9E-08 47.6 9.2 71 11-85 15-91 (111)
327 PF08205 C2-set_2: CD80-like C 97.6 0.0004 8.6E-09 47.3 7.3 69 208-276 14-86 (89)
328 cd07692 Ig_CD3_epsilon Immunog 97.6 0.00015 3.2E-09 45.4 4.5 52 15-85 5-56 (65)
329 cd05847 IgC_CH2_IgE CH2 domain 97.6 0.00085 1.9E-08 46.2 8.7 79 7-87 4-87 (94)
330 cd04981 IgV_H Immunoglobulin ( 97.6 0.0015 3.2E-08 47.0 10.4 22 251-272 76-97 (117)
331 KOG1480|consensus 97.6 5.2E-05 1.1E-09 69.0 3.1 68 205-276 141-208 (909)
332 cd05772 IgC_SIRP Signal-regula 97.5 0.0016 3.5E-08 46.2 10.0 70 205-275 18-93 (111)
333 cd07697 IgC_TCR_gamma T cell r 97.5 0.0014 3E-08 45.2 9.3 38 8-45 7-46 (96)
334 cd07696 IgC_CH3 CH3 domain (th 97.5 0.00087 1.9E-08 46.3 8.2 75 9-85 6-85 (96)
335 cd05719 Ig2_PVR_like Second im 97.5 0.0012 2.6E-08 45.5 8.6 74 209-285 16-95 (95)
336 smart00406 IGv Immunoglobulin 97.5 0.00032 7E-09 46.5 5.6 60 19-81 1-80 (81)
337 cd07703 Ig2_Nectin-2_like Seco 97.5 0.00095 2.1E-08 45.9 7.9 72 210-284 17-94 (95)
338 cd05719 Ig2_PVR_like Second im 97.5 0.00084 1.8E-08 46.3 7.3 74 8-86 6-82 (95)
339 smart00406 IGv Immunoglobulin 97.4 0.00095 2.1E-08 44.2 7.2 21 249-269 60-80 (81)
340 smart00407 IGc1 Immunoglobulin 97.3 0.0013 2.8E-08 43.2 6.9 64 211-274 2-71 (75)
341 cd07691 Ig_CD3_gamma_delta Imm 97.3 0.0007 1.5E-08 42.7 5.1 49 208-272 6-54 (69)
342 PF07654 C1-set: Immunoglobuli 97.3 0.0018 4E-08 43.4 7.7 65 16-85 7-76 (83)
343 cd04985 IgC_CH1 CH1 domain (fi 97.3 0.0025 5.5E-08 43.9 8.5 77 5-85 5-86 (95)
344 PHA03376 BARF1; Provisional 97.2 0.0043 9.3E-08 47.5 9.2 35 249-283 85-119 (221)
345 KOG1480|consensus 97.2 0.00014 3.1E-09 66.3 1.4 74 7-88 134-208 (909)
346 cd07698 IgC_MHC_I_alpha3 Class 97.2 0.0036 7.9E-08 42.9 8.0 68 208-275 14-84 (93)
347 cd07703 Ig2_Nectin-2_like Seco 97.1 0.0025 5.4E-08 43.9 6.9 69 13-86 11-82 (95)
348 PHA02633 hypothetical protein; 97.1 0.0011 2.3E-08 40.8 4.4 36 250-285 17-52 (63)
349 cd07691 Ig_CD3_gamma_delta Imm 97.1 0.00091 2E-08 42.2 4.1 51 15-84 4-54 (69)
350 cd07699 IgC_L Immunoglobulin C 97.1 0.0014 2.9E-08 45.8 5.5 70 205-274 14-89 (100)
351 cd05886 Ig1_Nectin-1_like Firs 97.1 0.0015 3.3E-08 45.4 5.5 37 115-152 61-98 (99)
352 cd05766 IgC_MHC_II_beta Class 97.1 0.012 2.6E-07 40.4 9.8 68 206-276 12-85 (94)
353 cd05721 IgV_CTLA-4 Immunoglobu 96.9 0.0095 2.1E-07 42.2 7.8 73 8-84 4-95 (115)
354 cd05770 IgC_beta2m Class I maj 96.8 0.023 4.9E-07 39.0 9.0 62 211-274 18-83 (93)
355 cd07704 Ig2_Nectin-3-4_like Se 96.7 0.009 1.9E-07 41.1 6.9 68 13-85 12-83 (97)
356 cd05768 IgC_CH4 CH4 domain (fo 96.7 0.0064 1.4E-07 42.5 6.0 69 206-274 14-91 (102)
357 cd05847 IgC_CH2_IgE CH2 domain 96.6 0.011 2.5E-07 40.5 6.9 69 208-276 14-88 (94)
358 cd07704 Ig2_Nectin-3-4_like Se 96.6 0.016 3.4E-07 39.9 7.4 79 205-284 13-96 (97)
359 cd05767 IgC_MHC_II_alpha Class 96.6 0.053 1.2E-06 37.2 9.9 48 224-274 32-84 (94)
360 PF08204 V-set_CD47: CD47 immu 96.6 0.014 3.1E-07 42.2 7.3 61 224-285 47-119 (130)
361 cd04986 IgC_CH2 CH2 domain (se 96.6 0.021 4.7E-07 39.5 7.7 80 3-86 4-89 (99)
362 cd05769 IgC_TCR_beta T cell re 96.5 0.019 4E-07 41.1 7.5 72 206-277 16-95 (115)
363 PF07654 C1-set: Immunoglobuli 96.3 0.029 6.3E-07 37.4 7.3 65 208-275 8-78 (83)
364 cd07696 IgC_CH3 CH3 domain (th 96.3 0.031 6.8E-07 38.5 7.6 71 205-275 11-87 (96)
365 cd07689 Ig2_VCAM-1 Second immu 96.3 0.034 7.4E-07 38.2 7.5 70 205-275 12-87 (99)
366 PHA02982 hypothetical protein; 96.2 0.14 3E-06 39.9 10.8 72 114-190 97-169 (251)
367 cd07689 Ig2_VCAM-1 Second immu 96.0 0.051 1.1E-06 37.3 7.1 71 13-85 11-85 (99)
368 KOG0613|consensus 96.0 0.023 5E-07 55.4 7.3 220 17-282 204-424 (1205)
369 PF07354 Sp38: Zona-pellucida- 95.9 0.011 2.4E-07 47.7 4.3 48 223-274 12-60 (271)
370 PHA03270 envelope glycoprotein 95.9 0.25 5.3E-06 42.9 12.3 65 116-181 181-246 (466)
371 PHA03269 envelope glycoprotein 95.9 0.19 4.1E-06 44.2 11.8 63 117-180 289-353 (566)
372 PHA02633 hypothetical protein; 95.9 0.028 6.1E-07 34.7 4.9 38 115-153 16-53 (63)
373 PHA03271 envelope glycoprotein 95.9 0.55 1.2E-05 40.7 14.2 25 115-139 205-229 (490)
374 cd07697 IgC_TCR_gamma T cell r 95.9 0.041 9E-07 37.9 6.4 30 208-237 16-46 (96)
375 cd05721 IgV_CTLA-4 Immunoglobu 95.9 0.064 1.4E-06 38.0 7.3 82 164-270 8-93 (115)
376 PF02480 Herpes_gE: Alphaherpe 95.8 0.031 6.7E-07 49.6 6.9 148 116-272 88-290 (439)
377 PF11465 Receptor_2B4: Natural 95.7 0.057 1.2E-06 37.4 6.3 28 250-277 70-97 (108)
378 PHA02914 Immunoglobulin-like d 95.4 0.18 4E-06 43.2 9.6 79 7-85 269-368 (500)
379 KOG4597|consensus 95.3 0.029 6.4E-07 48.9 4.8 80 204-285 207-291 (560)
380 PF06328 Lep_receptor_Ig: Ig-l 95.3 0.16 3.5E-06 34.4 7.5 68 8-82 9-81 (89)
381 PF08204 V-set_CD47: CD47 immu 95.2 0.038 8.3E-07 40.1 4.4 70 15-89 25-111 (130)
382 PHA03286 envelope glycoprotein 94.8 0.6 1.3E-05 40.8 11.1 38 116-153 126-163 (492)
383 cd04986 IgC_CH2 CH2 domain (se 94.7 0.12 2.6E-06 35.8 5.7 70 205-275 16-90 (99)
384 PHA02865 MHC-like TNF binding 94.7 0.19 4.2E-06 42.6 7.8 21 19-39 216-238 (338)
385 PHA03283 envelope glycoprotein 94.3 0.82 1.8E-05 40.9 11.1 149 116-271 133-335 (542)
386 PHA03273 envelope glycoprotein 94.0 1.8 3.9E-05 38.2 12.5 63 117-180 198-261 (486)
387 PHA03042 CD47-like protein; Pr 93.9 0.33 7.2E-06 39.5 7.3 59 16-86 30-93 (286)
388 KOG4597|consensus 93.6 0.084 1.8E-06 46.2 3.8 78 7-89 201-283 (560)
389 PHA03273 envelope glycoprotein 93.6 4 8.7E-05 36.1 13.8 71 13-83 246-322 (486)
390 PF07354 Sp38: Zona-pellucida- 93.2 0.16 3.4E-06 41.3 4.5 47 30-84 11-58 (271)
391 cd04985 IgC_CH1 CH1 domain (fi 93.1 0.49 1.1E-05 32.5 6.3 64 210-274 18-87 (95)
392 PHA03271 envelope glycoprotein 93.1 5.7 0.00012 34.7 15.3 22 63-84 207-228 (490)
393 PHA02982 hypothetical protein; 92.9 0.28 6.1E-06 38.3 5.2 28 248-275 97-124 (251)
394 PHA03269 envelope glycoprotein 92.8 5.5 0.00012 35.5 13.4 33 13-45 338-373 (566)
395 PHA03270 envelope glycoprotein 92.6 6.8 0.00015 34.4 16.0 22 65-86 184-205 (466)
396 PF11465 Receptor_2B4: Natural 92.2 0.38 8.2E-06 33.4 4.7 38 115-152 69-106 (108)
397 PF05790 C2-set: Immunoglobuli 92.1 0.81 1.7E-05 30.3 6.1 34 252-285 44-78 (80)
398 PHA03042 CD47-like protein; Pr 91.9 1.4 3.1E-05 36.0 8.3 68 209-284 32-103 (286)
399 PHA03281 envelope glycoprotein 90.4 3.9 8.5E-05 36.9 10.2 148 116-271 297-495 (642)
400 PHA03282 envelope glycoprotein 89.3 2.8 6.1E-05 37.1 8.3 23 116-138 123-145 (540)
401 PF05790 C2-set: Immunoglobuli 89.0 1.3 2.8E-05 29.3 5.0 22 65-86 45-67 (80)
402 PF06832 BiPBP_C: Penicillin-B 87.2 6.5 0.00014 26.4 7.7 71 2-89 10-84 (89)
403 PHA03052 Hypothetical protein; 85.5 3.7 8E-05 25.9 5.1 33 11-43 6-41 (69)
404 KOG0613|consensus 83.8 1.6 3.4E-05 43.3 4.5 132 3-137 335-513 (1205)
405 PHA02865 MHC-like TNF binding 70.0 31 0.00066 29.7 7.8 17 257-273 287-303 (338)
406 PF02124 Marek_A: Marek's dise 67.0 64 0.0014 25.8 14.5 15 98-112 6-20 (211)
407 PF06832 BiPBP_C: Penicillin-B 66.6 30 0.00065 23.1 6.0 41 100-143 44-84 (89)
408 PHA03240 envelope glycoprotein 66.1 13 0.00027 29.4 4.3 29 10-38 31-59 (258)
409 PHA02914 Immunoglobulin-like d 63.9 16 0.00035 31.9 5.0 69 205-273 276-368 (500)
410 PF02124 Marek_A: Marek's dise 62.5 48 0.001 26.4 7.1 60 24-84 96-159 (211)
411 PHA03189 UL14 tegument protein 61.7 46 0.001 28.0 7.0 78 11-88 61-158 (348)
412 cd05890 Ig2_Nectin-1_like Seco 61.2 27 0.00058 23.9 4.7 67 211-284 23-97 (98)
413 PF11049 KSHV_K1: Glycoprotein 60.9 18 0.00038 22.7 3.5 52 98-158 10-61 (71)
414 cd05890 Ig2_Nectin-1_like Seco 60.3 43 0.00092 23.0 5.5 21 18-38 21-42 (98)
415 PHA03240 envelope glycoprotein 59.8 26 0.00057 27.7 5.1 92 165-277 34-131 (258)
416 PF02440 Adeno_E3_CR1: Adenovi 59.5 32 0.0007 21.5 4.6 21 14-38 2-22 (63)
417 PF06328 Lep_receptor_Ig: Ig-l 58.5 43 0.00092 22.6 5.5 45 222-269 36-80 (89)
418 PHA03282 envelope glycoprotein 48.9 13 0.00028 33.2 2.1 25 118-142 334-359 (540)
419 KOG0200|consensus 48.4 1.4E+02 0.003 28.2 9.0 29 250-278 116-144 (609)
420 PHA03283 envelope glycoprotein 45.8 40 0.00087 30.6 4.6 37 250-286 133-169 (542)
421 PHA03189 UL14 tegument protein 45.7 1.8E+02 0.0038 24.7 7.9 27 257-283 139-166 (348)
422 PF01688 Herpes_gI: Alphaherpe 40.8 87 0.0019 23.8 5.2 28 250-277 123-150 (161)
423 PF05955 Herpes_gp2: Equine he 40.4 98 0.0021 23.9 5.3 76 24-108 114-192 (226)
424 smart00635 BID_2 Bacterial Ig- 29.8 1.5E+02 0.0033 19.2 4.6 38 4-41 4-44 (81)
425 PF02480 Herpes_gE: Alphaherpe 29.7 54 0.0012 29.5 3.0 20 65-84 271-290 (439)
426 PF00801 PKD: PKD domain; Int 27.7 1.6E+02 0.0034 18.2 4.2 30 11-40 5-34 (69)
427 COG5475 Uncharacterized small 27.1 1.3E+02 0.0029 18.2 3.3 22 119-142 20-41 (60)
428 PF03921 ICAM_N: Intercellular 26.6 2.1E+02 0.0046 19.4 5.6 65 5-83 6-71 (91)
429 PF11141 DUF2914: Protein of u 24.1 1.9E+02 0.0042 18.1 7.2 59 224-285 7-65 (66)
430 PF01688 Herpes_gI: Alphaherpe 22.9 2E+02 0.0043 21.9 4.5 25 116-140 123-147 (161)
431 PHA03292 envelope glycoprotein 22.2 2.4E+02 0.0052 24.8 5.3 25 250-274 127-151 (413)
432 PHA03289 envelope glycoprotein 21.6 2.1E+02 0.0045 24.5 4.7 26 250-275 121-146 (352)
433 PHA03281 envelope glycoprotein 20.3 1.9E+02 0.0041 26.8 4.5 37 250-286 297-334 (642)
434 COG4953 PbpC Membrane carboxyp 20.3 3E+02 0.0065 26.4 5.9 44 98-144 682-725 (733)
435 PF10430 Ig_Tie2_1: Tie-2 Ig-l 20.1 2.9E+02 0.0063 18.7 8.1 19 263-281 75-94 (96)
No 1
>KOG3513|consensus
Probab=100.00 E-value=1.3e-34 Score=265.23 Aligned_cols=276 Identities=32% Similarity=0.525 Sum_probs=209.1
Q ss_pred CCCeeEeccccc-cccCCCcEEEEEEeecCCCCeeEEeeCCEEcCCCCeeEeceEEecccceeEEEEEcccccCCCeEEE
Q psy15667 1 TPPILTYSFIEQ-TLQPGPAVSLKCIASGNPTPDIGWTLDGFELPTNNRFVIGQFVSGHGDVISHVNISHVTVEDGGEYA 79 (286)
Q Consensus 1 ~~p~~~~~~~~~-~~~~G~~~~l~C~~~g~p~p~v~W~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~I~~~~~~D~G~Y~ 79 (286)
.+|+|...+++. ....|+.+.|.|.+.|+|.|++.|+|.+..... .+...+. .+ .+|.|.+++.+|+|.|+
T Consensus 239 ~~P~i~~~~p~~~~a~~G~~v~LECfA~G~P~P~i~W~k~~g~~~~-~r~~~~~----~~---~vL~I~nv~~~D~G~Y~ 310 (1051)
T KOG3513|consen 239 YAPKILVPFPETETALKGQSVKLECFALGNPTPQIKWRKVDGKPPP-RRATYSN----YG---KVLKIPNVQYEDAGEYE 310 (1051)
T ss_pred cCCccccCCCCcccccCCCeEEEEEEecCCCCCcEEEEeCCCCCCC-cceeeec----cc---cEEEecccCcCCCeEEE
Confidence 378888888854 678999999999999999999999998874222 3322211 22 35999999999999999
Q ss_pred EEEEcCCEEEEE-------------------------------ecCCCCCeeEEEeeCCccCcCCC-------CcceEEE
Q psy15667 80 CVAENRAGTCEI-------------------------------TPYDSGPYLIAWFKDGRQIPGRT-------SSTSLVI 121 (286)
Q Consensus 80 C~a~n~~g~~~~-------------------------------~~~~~~~~~~~W~~~g~~l~~~~-------~~~~l~i 121 (286)
|.|+|..|.... ...+.+.+.|+|+|||.++.... ..+.|.|
T Consensus 311 C~AeN~~G~~~~~~~v~v~a~P~w~~~~~d~~~~~gs~v~~eC~a~g~P~p~v~WlkNg~pl~~~~r~~~~~i~~g~L~i 390 (1051)
T KOG3513|consen 311 CIAENSRGSATHSGHVTVYAPPYWLQKPQDTEADTGSNVTLECKASGKPNPTVKWLKNGEPLEPAERDPRYKIDDGTLII 390 (1051)
T ss_pred EEEecccccceeeEEEEEecCchhhcccceeEecCCCCeEEEEEecCCCCCceEEeeCCeecCccCCCcceEEeCCEEEE
Confidence 999999985321 11233457899999999986432 3578999
Q ss_pred ccCCCCCCeeEEEEEEcCCcceeeeeeEEEEcCC-CceecCC---ceEEecCCCEEEEeeEeeecCCeEEEEEcCCcccc
Q psy15667 122 NPVGREDRGIYQCIARRSDGDVAQGSAELQLGGL-PYVRLIP---KVTAIDGEGLSIKCPVAGYPIEEVHWEKVPPKIES 197 (286)
Q Consensus 122 ~~v~~~d~G~Y~C~a~~~~g~~~~~~~~l~v~~~-~~~~~~~---~~~~~~g~~~~l~c~~~~~p~~~v~w~~~~~~~~~ 197 (286)
.++...|+|.|+|.|.|.+|... +.+.|.|... |.+...+ ...+..|.++.|.|...+.|.|.+.|.+....+..
T Consensus 391 s~v~~~dsg~YQC~A~Nk~G~i~-anA~L~V~a~~P~f~~~p~~~~~~a~~g~~v~i~C~~~asP~p~~~W~k~~~~~~~ 469 (1051)
T KOG3513|consen 391 SNVQESDSGVYQCIAENKYGTIY-ANAELKVLASAPVFPLNPVERKVMAVVGGTVTIDCKPFASPKPKVSWLKGGEKLLQ 469 (1051)
T ss_pred EecccccCeEEEeeeecccceEe-eeeEEEEEccCCCCCCCccceEEEEEeCCeEEEeeccCCCCcceEEEEcCCccccc
Confidence 99999999999999999999875 4789999765 5444333 23566899999999999999999999984331100
Q ss_pred ---------------------------------------------------cccccCCCCCCCeEEEEEeeecCC-CCCe
Q psy15667 198 ---------------------------------------------------FAFPFDGLPEGARTRVICGVTHGD-PPLT 225 (286)
Q Consensus 198 ---------------------------------------------------~~~~~~~~~~g~~~~l~c~~~~~~-p~~~ 225 (286)
.......+..|..+.|.|++++.. .-..
T Consensus 470 ~~r~~i~edGtL~I~n~t~~DaG~YtC~A~N~~G~a~~~~~L~Vkd~tri~~~P~~~~v~~g~~v~l~Ce~shD~~ld~~ 549 (1051)
T KOG3513|consen 470 SGRIRILEDGTLEISNVTRSDAGKYTCVAENKLGKAESTGNLIVKDATRITLAPSNTDVKVGESVTLTCEASHDPSLDIT 549 (1051)
T ss_pred CceEEECCCCcEEecccCcccCcEEEEEEEcccCccceEEEEEEecCceEEeccchhhhccCceEEEEeecccCCCcceE
Confidence 011134578899999999988543 3367
Q ss_pred EEEEeCCeeCCCC---CCceeeecCCCeeeEEEcccCCCCCeEEEEEEEecccceeeEEEEEEC
Q psy15667 226 IRWLKDGKPLSPR---FPVNVSDLDSFSSLLSINSVSAAHSGEYTCVASNTAAQARYSSKLQVK 286 (286)
Q Consensus 226 ~~W~~~g~~~~~~---~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~N~~g~~~~~~~L~V~ 286 (286)
+.|.+||+.+... ..+.+... ..++.|+|.++..+|+|.|+|+|...+.+++..+.|.|+
T Consensus 550 f~W~~nG~~id~~~~~~~~~~~~~-~~~g~L~i~nv~l~~~G~Y~C~aqT~~Ds~s~~A~l~V~ 612 (1051)
T KOG3513|consen 550 FTWKKNGRPIDFNPDGDHFEINDG-SDSGRLTIANVSLEDSGKYTCVAQTALDSASARADLLVR 612 (1051)
T ss_pred EEEEECCEEhhccCCCCceEEeCC-cCccceEEEeeccccCceEEEEEEEeecchhcccceEEe
Confidence 8999999977432 23333322 223679999999999999999999988888888888774
No 2
>KOG3513|consensus
Probab=100.00 E-value=4.6e-34 Score=261.61 Aligned_cols=271 Identities=29% Similarity=0.479 Sum_probs=206.4
Q ss_pred CeeEeccccccc-cCCC--cEEEEEEeecCCCCeeEEeeCCEEcCCCCeeEeceEEecccceeEEEEEcccc-cCCCeEE
Q psy15667 3 PILTYSFIEQTL-QPGP--AVSLKCIASGNPTPDIGWTLDGFELPTNNRFVIGQFVSGHGDVISHVNISHVT-VEDGGEY 78 (286)
Q Consensus 3 p~~~~~~~~~~~-~~G~--~~~l~C~~~g~p~p~v~W~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~I~~~~-~~D~G~Y 78 (286)
|+|...+.+..+ .+-+ .+.|.|.+.|+|.|++.|++||..+......... + .++ +|.|.+.. ..|.|.|
T Consensus 40 P~f~~q~~~~~~~~~~~~~~v~l~C~A~G~P~Psy~W~kng~~~d~~~~~~~~-~---~~G---~lvI~~p~~~~d~G~Y 112 (1051)
T KOG3513|consen 40 PVFVEQPNDVIVPFPSDDSSVTLNCEANGNPEPSYRWTKNGTEFDPTEYPRVS-V---LGG---TLVITNPDAALDQGIY 112 (1051)
T ss_pred ceeeecCCceEEecccCCccEEEEEEecCCCCceeEEEECCeeccccccccee-e---ecC---ceEecCCcchhhccee
Confidence 788888876654 3333 3999999999999999999999988654322221 1 122 25666666 8999999
Q ss_pred EEEEEcCCEEEEEe---------------------------------c--------------------------------
Q psy15667 79 ACVAENRAGTCEIT---------------------------------P-------------------------------- 93 (286)
Q Consensus 79 ~C~a~n~~g~~~~~---------------------------------~-------------------------------- 93 (286)
+|+|.|..|.+... +
T Consensus 113 qC~AsN~~Gta~S~~~~l~~~~i~~F~~e~~~~v~v~eG~~~~L~C~pP~~~P~l~~~W~~~~~~~~~~~~~~r~~~~~~ 192 (1051)
T KOG3513|consen 113 QCFASNKLGTAVSREARLQFGFIPKFKKEERSPVEVEEGDGVVLPCNPPAHFPPLRYYWMLNEFPHFVQIDNRRVFSQEN 192 (1051)
T ss_pred EEEeecccceeeccceeecccccccCccccCCcEEEEeCCceEEeCCCCCCCCCccEEehhccCCcccccCcceeEeccc
Confidence 99999998853100 0
Q ss_pred -------------------------------------------------------------------------CCCCCee
Q psy15667 94 -------------------------------------------------------------------------YDSGPYL 100 (286)
Q Consensus 94 -------------------------------------------------------------------------~~~~~~~ 100 (286)
.+.+.++
T Consensus 193 G~Lyfs~V~~~D~~~Y~C~a~~~~~~~~v~~~~~~L~~~~~~~~~~~~P~i~~~~p~~~~a~~G~~v~LECfA~G~P~P~ 272 (1051)
T KOG3513|consen 193 GNLYFSNVETSDFGNYICSATFPSTQTIVQGPPFPLIVRSNNVMREYAPKILVPFPETETALKGQSVKLECFALGNPTPQ 272 (1051)
T ss_pred ceEEEeecchhhcCceEEEEEchhhcccccCCceeEEEcccccccccCCccccCCCCcccccCCCeEEEEEEecCCCCCc
Confidence 0011246
Q ss_pred EEEeeCCc-cCcCC----CCcceEEEccCCCCCCeeEEEEEEcCCcceeeeeeEEEEcCCCceec-CCceEEecCCCEEE
Q psy15667 101 IAWFKDGR-QIPGR----TSSTSLVINPVGREDRGIYQCIARRSDGDVAQGSAELQLGGLPYVRL-IPKVTAIDGEGLSI 174 (286)
Q Consensus 101 ~~W~~~g~-~l~~~----~~~~~l~i~~v~~~d~G~Y~C~a~~~~g~~~~~~~~l~v~~~~~~~~-~~~~~~~~g~~~~l 174 (286)
|.|.|.+. +++.+ .....|.|.++..+|+|.|.|.|.|..|.. ....++.|+..|.... ..+..+..|+++++
T Consensus 273 i~W~k~~g~~~~~r~~~~~~~~vL~I~nv~~~D~G~Y~C~AeN~~G~~-~~~~~v~v~a~P~w~~~~~d~~~~~gs~v~~ 351 (1051)
T KOG3513|consen 273 IKWRKVDGKPPPRRATYSNYGKVLKIPNVQYEDAGEYECIAENSRGSA-THSGHVTVYAPPYWLQKPQDTEADTGSNVTL 351 (1051)
T ss_pred EEEEeCCCCCCCcceeeeccccEEEecccCcCCCeEEEEEEecccccc-eeeEEEEEecCchhhcccceeEecCCCCeEE
Confidence 89999665 55543 235789999999999999999999999954 5688999988887544 44567778999999
Q ss_pred EeeEeeecCCeEEEEEcCCcccc----------------------------c----------------------ccc---
Q psy15667 175 KCPVAGYPIEEVHWEKVPPKIES----------------------------F----------------------AFP--- 201 (286)
Q Consensus 175 ~c~~~~~p~~~v~w~~~~~~~~~----------------------------~----------------------~~~--- 201 (286)
.|.+.|.|.|.+.|.+....+.. | .++
T Consensus 352 eC~a~g~P~p~v~WlkNg~pl~~~~r~~~~~i~~g~L~is~v~~~dsg~YQC~A~Nk~G~i~anA~L~V~a~~P~f~~~p 431 (1051)
T KOG3513|consen 352 ECKASGKPNPTVKWLKNGEPLEPAERDPRYKIDDGTLIISNVQESDSGVYQCIAENKYGTIYANAELKVLASAPVFPLNP 431 (1051)
T ss_pred EEEecCCCCCceEEeeCCeecCccCCCcceEEeCCEEEEEecccccCeEEEeeeecccceEeeeeEEEEEccCCCCCCCc
Confidence 99999999999999984322110 0 000
Q ss_pred ---cCCCCCCCeEEEEEeeecCCCCCeEEEEeCCeeCCCCCCceeeecCCCeeeEEEcccCCCCCeEEEEEEEeccccee
Q psy15667 202 ---FDGLPEGARTRVICGVTHGDPPLTIRWLKDGKPLSPRFPVNVSDLDSFSSLLSINSVSAAHSGEYTCVASNTAAQAR 278 (286)
Q Consensus 202 ---~~~~~~g~~~~l~c~~~~~~p~~~~~W~~~g~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~N~~g~~~ 278 (286)
..-+..|..+.+.|.. .+.|.+.+.|.|+++.+.++.++.+.. +++|.|.+++.+|+|.|+|.|.|..|.+.
T Consensus 432 ~~~~~~a~~g~~v~i~C~~-~asP~p~~~W~k~~~~~~~~~r~~i~e----dGtL~I~n~t~~DaG~YtC~A~N~~G~a~ 506 (1051)
T KOG3513|consen 432 VERKVMAVVGGTVTIDCKP-FASPKPKVSWLKGGEKLLQSGRIRILE----DGTLEISNVTRSDAGKYTCVAENKLGKAE 506 (1051)
T ss_pred cceEEEEEeCCeEEEeecc-CCCCcceEEEEcCCcccccCceEEECC----CCcEEecccCcccCcEEEEEEEcccCccc
Confidence 0114469999999987 478999999999999777777777654 56899999999999999999999999999
Q ss_pred eEEEEEEC
Q psy15667 279 YSSKLQVK 286 (286)
Q Consensus 279 ~~~~L~V~ 286 (286)
.++.|.|+
T Consensus 507 ~~~~L~Vk 514 (1051)
T KOG3513|consen 507 STGNLIVK 514 (1051)
T ss_pred eEEEEEEe
Confidence 99999986
No 3
>KOG4222|consensus
Probab=99.96 E-value=8e-28 Score=219.24 Aligned_cols=276 Identities=26% Similarity=0.475 Sum_probs=205.7
Q ss_pred CCCeeEeccccccccCCCcEEEEEEeecCCCCeeEEeeCCEEcC----CCCeeEeceEEecccceeEEEEEc--ccccCC
Q psy15667 1 TPPILTYSFIEQTLQPGPAVSLKCIASGNPTPDIGWTLDGFELP----TNNRFVIGQFVSGHGDVISHVNIS--HVTVED 74 (286)
Q Consensus 1 ~~p~~~~~~~~~~~~~G~~~~l~C~~~g~p~p~v~W~~~~~~l~----~~~~~~~~~~~~~~~~~~~~l~I~--~~~~~D 74 (286)
.||++...+.++.+..|+.++|.|.+.|.|.|.+.|+|||.... .+.|+.. ..+.+ ..|.+. .-...|
T Consensus 30 ~~p~iiehp~d~vvs~~~patlnc~asG~ppPti~w~k~G~~~~~~e~~shR~~l-----p~gsL-f~l~~ahg~~a~~d 103 (1281)
T KOG4222|consen 30 QPPRIIEHPHDLVVSKGEPATLNCKASGDPPPTIEWYKDGENVFKGEPGSHRFLL-----PDGSL-FLLRLAHGKKAGHD 103 (1281)
T ss_pred CCCceEecchhhhccCCCCceeecCCCCCCCCceecccCCcccCCCCCCCcceec-----CCccE-EEEecccCCcccCC
Confidence 37999999999999999999999999999999999999996432 3445432 22332 223332 223349
Q ss_pred CeEEEEEEEcCCEEEEEe----------------------------------cCCCCCeeEEEeeCCccCcCC-------
Q psy15667 75 GGEYACVAENRAGTCEIT----------------------------------PYDSGPYLIAWFKDGRQIPGR------- 113 (286)
Q Consensus 75 ~G~Y~C~a~n~~g~~~~~----------------------------------~~~~~~~~~~W~~~g~~l~~~------- 113 (286)
.|.|.|.|.|..|.+.-. +...+.+.+.|.|||+++...
T Consensus 104 ~G~y~cvasn~~g~avSr~a~L~vavlrddfrv~prd~~~a~ge~avlEcgpP~ghpeptvSw~Kdg~pl~~~~~~~~~l 183 (1281)
T KOG4222|consen 104 HGVYSCVASNRLGEAVSRGASLIVAVLRDDFRVSPRDVQAAVGEEAVLECGPPRGHPEPTVSWVKDGKPLDHYDVPIIAL 183 (1281)
T ss_pred CceeEeeecCccceeeecCceEEEEEechhcccCcccccccccceeEEeccCCCCCCCCcceeecCCCccccccceeEEE
Confidence 999999999999875311 111233578999999998621
Q ss_pred CCcceEEEccCCCCCCeeEEEEEEcCCcceeeeeeEEEEcCCCceec-CCceEEecCCCEEEEeeEeeecCCeEEEEEcC
Q psy15667 114 TSSTSLVINPVGREDRGIYQCIARRSDGDVAQGSAELQLGGLPYVRL-IPKVTAIDGEGLSIKCPVAGYPIEEVHWEKVP 192 (286)
Q Consensus 114 ~~~~~l~i~~v~~~d~G~Y~C~a~~~~g~~~~~~~~l~v~~~~~~~~-~~~~~~~~g~~~~l~c~~~~~p~~~v~w~~~~ 192 (286)
...+.|.|.++.+.|+|.|.|.+.|..|...+..++|.|+.+|.+.. ...+.+.+|+.+.+.|.+.|.|.|.+.|.+..
T Consensus 184 isgG~LlIsnvrksD~GtY~CVatNmvG~ReS~~A~lsv~e~P~f~~rp~~~~v~~g~~~~f~c~v~GdP~P~Vrwkk~~ 263 (1281)
T KOG4222|consen 184 ISGGNLLISNVRKSDEGTYACVATNMVGERESIPARLSVQEKPWFWKRPKDLAVLVGAAAEFDCRVGGDPQPTVRWKKDD 263 (1281)
T ss_pred ecCCcEEEeccccCCCceeeeeecccccccccccceeeeccCCccccccccceeecccccccccccCCCCCCceeeeccC
Confidence 24578999999999999999999999998877789999998887554 44577889999999999999999999999832
Q ss_pred Ccccc--------------------------c-------------------------ccccCCCCCCCeEEEEEeeecCC
Q psy15667 193 PKIES--------------------------F-------------------------AFPFDGLPEGARTRVICGVTHGD 221 (286)
Q Consensus 193 ~~~~~--------------------------~-------------------------~~~~~~~~~g~~~~l~c~~~~~~ 221 (286)
+.+.. + ...+..+-.|..+.|.|.+. |.
T Consensus 264 ~~~P~~ry~i~~d~qtl~i~r~tp~deg~y~C~a~n~vG~l~asa~ltV~apP~f~kkp~dq~v~lg~~vt~pc~~~-gn 342 (1281)
T KOG4222|consen 264 PSLPRSRYSILDDTQTLRIDRVTPTDEGTYVCPAENLVGGLEASATLTVQAPPSFGKKPRDQKVALGGTVTFPCETL-GN 342 (1281)
T ss_pred CCCCccceeeeeccccccccccCCCcccceeeeccccccccccccceEEecCcccccccCccccccCceEEeeeecC-CC
Confidence 21110 0 00033456789999999985 88
Q ss_pred CCCeEEEEeCCeeC--C---C-CCCceeeecCCCeeeEEEcccCCCCCeEEEEEEEecccceeeEEEEEE
Q psy15667 222 PPLTIRWLKDGKPL--S---P-RFPVNVSDLDSFSSLLSINSVSAAHSGEYTCVASNTAAQARYSSKLQV 285 (286)
Q Consensus 222 p~~~~~W~~~g~~~--~---~-~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~N~~g~~~~~~~L~V 285 (286)
|+|.+.|.|.|... . + ..+...+. ...+.|+|.++..+|.|.|.|.+.|.+|.....+.|.|
T Consensus 343 P~PavfW~keg~q~llf~~~p~~~~~r~sv--s~~g~L~it~v~~~d~g~Yvcq~~~~~~ss~~~a~~~q 410 (1281)
T KOG4222|consen 343 PPPAVFWLKEGSQDLLFSASPPSSNGRGSV--SPTGTLTITNVRQSDEGYYVCQTQTSAGSSLTKAYLEQ 410 (1281)
T ss_pred CCcceEEeccCcceecccCCCCCcCcccee--cCCCCcccccccccccceEeecccccccccccceeEEE
Confidence 99999999988522 1 1 11111111 12348999999999999999999999998887777664
No 4
>PHA02785 IL-beta-binding protein; Provisional
Probab=99.96 E-value=1.7e-26 Score=196.12 Aligned_cols=221 Identities=23% Similarity=0.336 Sum_probs=140.0
Q ss_pred ccccccCCCcEEEEEEe-----ecCCCCeeEEeeCCEEcCCCCeeEeceEEecccceeEEEEEcccccCCCeEEEEEEEc
Q psy15667 10 IEQTLQPGPAVSLKCIA-----SGNPTPDIGWTLDGFELPTNNRFVIGQFVSGHGDVISHVNISHVTVEDGGEYACVAEN 84 (286)
Q Consensus 10 ~~~~~~~G~~~~l~C~~-----~g~p~p~v~W~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~I~~~~~~D~G~Y~C~a~n 84 (286)
+.+.+.+|+.+.|.|.+ .|.|.++++|+|+|.... ..... .++. .|.|.++..+|+|.|+|.|.|
T Consensus 34 ~~~~~~~ge~~~l~C~~~~~~~~g~p~~~i~W~K~g~~~~--~~~~~-----~~g~---~l~i~~~~~~DsG~Y~C~a~N 103 (326)
T PHA02785 34 ASFMELENEPVILPCPQINTLSSGYNILDILWEKRGADND--RIIPI-----DNGS---NMLILNPTQSDSGIYICITKN 103 (326)
T ss_pred chhhhhcCCCEEEECCCccccccCCCCceEEEEECCCccc--eEEEc-----cCCc---eEEEcccCcccCeEEEEEEEC
Confidence 45567899999999987 688999999999985422 11111 1222 366999999999999999999
Q ss_pred CCEEEE----Ee---------------------------cC-------CCCCeeEEEeeCCccCcCC---CCcceEEEcc
Q psy15667 85 RAGTCE----IT---------------------------PY-------DSGPYLIAWFKDGRQIPGR---TSSTSLVINP 123 (286)
Q Consensus 85 ~~g~~~----~~---------------------------~~-------~~~~~~~~W~~~g~~l~~~---~~~~~l~i~~ 123 (286)
..|... ++ .. ..+++.++|++++.....+ ...+.|.|.+
T Consensus 104 ~~g~~~~s~~L~V~~~~~~~~~~~~~~~~~~~g~~~~i~C~~~~~~~~~~~~~~i~W~k~~~~~~~r~~~~~~~~L~i~~ 183 (326)
T PHA02785 104 ETYCDMMSLNLTIVSVSESNIDLISYPQIVNERSTGEMVCPNINAFIASNVNADIIWSGHRRLRNKRLKQRTPGIITIED 183 (326)
T ss_pred CCcceEEEEEEEEEecCCCccceeeccceecccCcEEEECCChhhcccCCCCceEEEccCCccCCcceEecCCCeEEEee
Confidence 875211 10 00 1234679999875422122 1246799999
Q ss_pred CCCCCCeeEEEEEEcCCcceee---eeeEEEEcC---CCceecCCceEEecCCCEEEEeeEeeecCCeEEEEEcCCcccc
Q psy15667 124 VGREDRGIYQCIARRSDGDVAQ---GSAELQLGG---LPYVRLIPKVTAIDGEGLSIKCPVAGYPIEEVHWEKVPPKIES 197 (286)
Q Consensus 124 v~~~d~G~Y~C~a~~~~g~~~~---~~~~l~v~~---~~~~~~~~~~~~~~g~~~~l~c~~~~~p~~~v~w~~~~~~~~~ 197 (286)
+..+|+|.|+|.+.|.+|.... ..+.|.|.. +|.+..+....+
T Consensus 184 v~~~d~G~Y~C~~~n~~g~~~~~~t~~v~l~V~~~~~pp~~~~p~~~~~------------------------------- 232 (326)
T PHA02785 184 VRKNDAGYYTCVLKYIYGDKTYNVTRIVKLEVRDRIIPPTMQLPEGVVT------------------------------- 232 (326)
T ss_pred cChhhCeEEEEEEEeccCCEEEeEEEEEEEEEeccCCCceecCCCcEEe-------------------------------
Confidence 9999999999999998776421 123344421 111111122222
Q ss_pred cccccCCCCCCCeEEEEEeeecCCCC--CeEEEEeCCeeCCCCC-----CceeeecC-------CCeeeEEEcccCCCCC
Q psy15667 198 FAFPFDGLPEGARTRVICGVTHGDPP--LTIRWLKDGKPLSPRF-----PVNVSDLD-------SFSSLLSINSVSAAHS 263 (286)
Q Consensus 198 ~~~~~~~~~~g~~~~l~c~~~~~~p~--~~~~W~~~g~~~~~~~-----~~~~~~~~-------~~~~~L~i~~v~~~d~ 263 (286)
..|..+.|.|.+..++++ +.+.|+|||..+.... ++...... .....|.|.+++.+|+
T Consensus 233 --------~~G~~v~L~C~a~g~P~~~~~~v~W~kng~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~V~~~D~ 304 (326)
T PHA02785 233 --------SIGSNLTIACRVSLRPPTTDADVFWISNGMYYEEDDEDGDGRISVANKIYTTDKRRVITSRLNINPVKEEDA 304 (326)
T ss_pred --------cCCCcEEEEEEEECCCCCCCceEEEEECCEECCCcCCCCceeEEEecCccccccceeeeEEEEECCcchhcC
Confidence 345555555555433222 5788999988775321 11111100 1145799999999999
Q ss_pred eEEEEEEEecccceee
Q psy15667 264 GEYTCVASNTAAQARY 279 (286)
Q Consensus 264 G~Y~C~a~N~~g~~~~ 279 (286)
|.|+|.|.|..|....
T Consensus 305 G~Y~C~A~n~~~~~~~ 320 (326)
T PHA02785 305 TTFTCMAFTIPSISKT 320 (326)
T ss_pred eeeEEEEEeccCceEe
Confidence 9999999999865443
No 5
>KOG4222|consensus
Probab=99.94 E-value=1e-26 Score=212.13 Aligned_cols=269 Identities=27% Similarity=0.442 Sum_probs=203.7
Q ss_pred eEeccccccccCCCcEEEEE-EeecCCCCeeEEeeCCEEcCC--CCeeEeceEEecccceeEEEEEcccccCCCeEEEEE
Q psy15667 5 LTYSFIEQTLQPGPAVSLKC-IASGNPTPDIGWTLDGFELPT--NNRFVIGQFVSGHGDVISHVNISHVTVEDGGEYACV 81 (286)
Q Consensus 5 ~~~~~~~~~~~~G~~~~l~C-~~~g~p~p~v~W~~~~~~l~~--~~~~~~~~~~~~~~~~~~~l~I~~~~~~D~G~Y~C~ 81 (286)
|.+.+++..+..|+.++|+| .-.|.|-|.|.|.|||++|.. ..++. .+ .++ .|.|.++...|+|.|.|.
T Consensus 134 frv~prd~~~a~ge~avlEcgpP~ghpeptvSw~Kdg~pl~~~~~~~~~---li--sgG---~LlIsnvrksD~GtY~CV 205 (1281)
T KOG4222|consen 134 FRVSPRDVQAAVGEEAVLECGPPRGHPEPTVSWVKDGKPLDHYDVPIIA---LI--SGG---NLLISNVRKSDEGTYACV 205 (1281)
T ss_pred cccCcccccccccceeEEeccCCCCCCCCcceeecCCCccccccceeEE---Ee--cCC---cEEEeccccCCCceeeee
Confidence 66788888889999999999 567899999999999999862 22221 11 232 278999999999999999
Q ss_pred EEcCCEEEE-----Ee---------------------------cCCCCCeeEEEeeCCccCcCC-----CCcceEEEccC
Q psy15667 82 AENRAGTCE-----IT---------------------------PYDSGPYLIAWFKDGRQIPGR-----TSSTSLVINPV 124 (286)
Q Consensus 82 a~n~~g~~~-----~~---------------------------~~~~~~~~~~W~~~g~~l~~~-----~~~~~l~i~~v 124 (286)
|+|..|.-+ +. ..+.+.+.+.|.+++..++-. ....+|.|.++
T Consensus 206 atNmvG~ReS~~A~lsv~e~P~f~~rp~~~~v~~g~~~~f~c~v~GdP~P~Vrwkk~~~~~P~~ry~i~~d~qtl~i~r~ 285 (1281)
T KOG4222|consen 206 ATNMVGERESIPARLSVQEKPWFWKRPKDLAVLVGAAAEFDCRVGGDPQPTVRWKKDDPSLPRSRYSILDDTQTLRIDRV 285 (1281)
T ss_pred ecccccccccccceeeeccCCccccccccceeecccccccccccCCCCCCceeeeccCCCCCccceeeeecccccccccc
Confidence 999888532 11 012234678999887777532 22478999999
Q ss_pred CCCCCeeEEEEEEcCCcceeeeeeEEEEcCCCceecC-CceEEecCCCEEEEeeEeeecCCeEEEEEcCCcccc------
Q psy15667 125 GREDRGIYQCIARRSDGDVAQGSAELQLGGLPYVRLI-PKVTAIDGEGLSIKCPVAGYPIEEVHWEKVPPKIES------ 197 (286)
Q Consensus 125 ~~~d~G~Y~C~a~~~~g~~~~~~~~l~v~~~~~~~~~-~~~~~~~g~~~~l~c~~~~~p~~~v~w~~~~~~~~~------ 197 (286)
.+.|+|.|.|.+.|..|.+ ...+.++|...|.+... ....+.-|..++|.|++.|.|.|.+.|.+.......
T Consensus 286 tp~deg~y~C~a~n~vG~l-~asa~ltV~apP~f~kkp~dq~v~lg~~vt~pc~~~gnP~PavfW~keg~q~llf~~~p~ 364 (1281)
T KOG4222|consen 286 TPTDEGTYVCPAENLVGGL-EASATLTVQAPPSFGKKPRDQKVALGGTVTFPCETLGNPPPAVFWLKEGSQDLLFSASPP 364 (1281)
T ss_pred CCCcccceeeecccccccc-ccccceEEecCcccccccCccccccCceEEeeeecCCCCCcceEEeccCcceecccCCCC
Confidence 9999999999999999987 45788999887765433 345556688899999999999999999983211100
Q ss_pred ------------------------------------------------------------cccccCCCCCCCeEEEEEee
Q psy15667 198 ------------------------------------------------------------FAFPFDGLPEGARTRVICGV 217 (286)
Q Consensus 198 ------------------------------------------------------------~~~~~~~~~~g~~~~l~c~~ 217 (286)
...-+..+.++..+.+.|..
T Consensus 365 ~~~~r~svs~~g~L~it~v~~~d~g~Yvcq~~~~~~ss~~~a~~~qt~~~~~~rPpp~i~~g~~nQtl~v~s~a~l~c~a 444 (1281)
T KOG4222|consen 365 SSNGRGSVSPTGTLTITNVRQSDEGYYVCQTQTSAGSSLTKAYLEQTDVLTDSRPPPIIEQGPANQTLPVGSTASLPCSA 444 (1281)
T ss_pred CcCccceecCCCCcccccccccccceEeecccccccccccceeEEEEeeeccCCCCceeeecccccccccCcccccChhh
Confidence 00013456778999999986
Q ss_pred ecCCCCCeEEEEeCCeeCCCCCCceeeecCCCeeeEEEcccCCCCCeEEEEEEEecccceeeEEEEEEC
Q psy15667 218 THGDPPLTIRWLKDGKPLSPRFPVNVSDLDSFSSLLSINSVSAAHSGEYTCVASNTAAQARYSSKLQVK 286 (286)
Q Consensus 218 ~~~~p~~~~~W~~~g~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~N~~g~~~~~~~L~V~ 286 (286)
. +.|.+.+.|+++|-.+......... ...+.|.|.+....|.|.|+|.|.+..|+..+++.|.|.
T Consensus 445 t-g~P~p~i~wl~dg~~v~~~d~~~s~---~~~~~l~i~dl~~~DtG~YTc~as~~~ges~wSatl~v~ 509 (1281)
T KOG4222|consen 445 T-GAPTPNISWLKDGCNVMNPDSRISQ---QEIGSLRIRDLKGPDTGRYTCIASDESGESTWSATLTVE 509 (1281)
T ss_pred h-CCCCCCchhhhcccccccCCcccce---eeeceeeeeeeecCCCcceeeeccCcccccccceeeEhh
Confidence 4 8999999999999866433211111 124689999999999999999999999999999999873
No 6
>KOG4194|consensus
Probab=99.94 E-value=1.6e-25 Score=193.13 Aligned_cols=238 Identities=25% Similarity=0.417 Sum_probs=169.5
Q ss_pred CeeEeccccccccCCCcEEEEEEeec--CCCCeeEEeeCCEEcCC-----CCeeEeceE----EecccceeEEEEEcccc
Q psy15667 3 PILTYSFIEQTLQPGPAVSLKCIASG--NPTPDIGWTLDGFELPT-----NNRFVIGQF----VSGHGDVISHVNISHVT 71 (286)
Q Consensus 3 p~~~~~~~~~~~~~G~~~~l~C~~~g--~p~p~v~W~~~~~~l~~-----~~~~~~~~~----~~~~~~~~~~l~I~~~~ 71 (286)
|++...|-+.....|++++|+|.+.+ ..+..+.|.+|+..++. ..++.. |. ..........|.+.||+
T Consensus 504 pqI~~qPe~~~al~g~nirftC~a~sssasplsi~WR~dnevq~rv~ved~a~~~~-q~r~~~~~e~~~~~~~L~L~nVt 582 (873)
T KOG4194|consen 504 PQIVTQPETVSALIGENIRFTCNAYSSSASPLSIEWRKDNEVQPRVDVEDFATFLS-QNRNGTFGEREEYTAILHLDNVT 582 (873)
T ss_pred cceecCchHhhhhhccceEEEEEeccCCCCCceeEeeeccccCcccchhcchhhhh-hhccCccchhhhhhheeeeeeee
Confidence 67788888888899999999999987 34558999999764421 111211 10 00011123458899999
Q ss_pred cCCCeEEEEEEEcCCEEE-----EE---------------------------ecCCCCCeeEEEeeCCcc-CcCC-----
Q psy15667 72 VEDGGEYACVAENRAGTC-----EI---------------------------TPYDSGPYLIAWFKDGRQ-IPGR----- 113 (286)
Q Consensus 72 ~~D~G~Y~C~a~n~~g~~-----~~---------------------------~~~~~~~~~~~W~~~g~~-l~~~----- 113 (286)
..|.|.|+|.+.|..|+. .+ ...+.+.|+|.|.|+|.. ++..
T Consensus 583 ~td~grYQCVvtN~FGStysqk~KltV~~~PsFtktP~dltl~tg~mArl~CaAtG~P~PeIawqkdggtdFPAA~eRRl 662 (873)
T KOG4194|consen 583 FTDEGRYQCVVTNHFGSTYSQKAKLTVNQAPSFTKTPEDLTLRTGQMARLECAATGHPRPEIAWQKDGGTDFPAARERRL 662 (873)
T ss_pred cccCceEEEEEecccCcchhheeEEEeeccCccccCcccceeecccceeeeeeccCCCCcceeehhcCCCCCchhhhhee
Confidence 999999999999998852 11 122345689999998765 6541
Q ss_pred ---CCcceEEEccCCCCCCeeEEEEEEcCCcceeeeeeEEEEcCCCceec-CCceEEecCCCEEEEeeEeeecCCeEEEE
Q psy15667 114 ---TSSTSLVINPVGREDRGIYQCIARRSDGDVAQGSAELQLGGLPYVRL-IPKVTAIDGEGLSIKCPVAGYPIEEVHWE 189 (286)
Q Consensus 114 ---~~~~~l~i~~v~~~d~G~Y~C~a~~~~g~~~~~~~~l~v~~~~~~~~-~~~~~~~~g~~~~l~c~~~~~p~~~v~w~ 189 (286)
.....+.|.+|..+|.|.|+|.|.|.+|+. ++.+.|.|...|.... ...+.+..|+++.|.|.+.+.|
T Consensus 663 ~Vmpedd~f~Itnvk~eD~GiYtC~A~n~AG~i-sanAtL~V~e~p~f~~PL~~~~V~~get~vlqC~a~~~~------- 734 (873)
T KOG4194|consen 663 HVMPEDDVFFITNVKIEDQGIYTCTAQNVAGQI-SANATLTVLETPSFSIPLEDQLVVVGETLVLQCLAEGAP------- 734 (873)
T ss_pred eecCCCCEEEEecccccccceeEEeeeccccce-eeceEEEEecCCcccccccceEEEecceEEEEEecCCCC-------
Confidence 134578899999999999999999999987 5689999988765433 3456666777777777665433
Q ss_pred EcCCcccccccccCCCCCCCeEEEEEeeecCCCCCeEEEEeCCeeCCCCCCceeeecCCCeeeEEEcccCCCCCeEEEEE
Q psy15667 190 KVPPKIESFAFPFDGLPEGARTRVICGVTHGDPPLTIRWLKDGKPLSPRFPVNVSDLDSFSSLLSINSVSAAHSGEYTCV 269 (286)
Q Consensus 190 ~~~~~~~~~~~~~~~~~~g~~~~l~c~~~~~~p~~~~~W~~~g~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~ 269 (286)
+.|.+.|+|+.+++.-..+..+. .....|.+.+...+|+|.|+|.
T Consensus 735 --------------------------------a~pr~~W~k~d~pil~t~rh~f~---d~dQllvv~~~~~~daG~yTce 779 (873)
T KOG4194|consen 735 --------------------------------ADPRLEWFKEDKPILITERHTFP---DGDQLLVVKENLVEDAGIYTCE 779 (873)
T ss_pred --------------------------------CCccccccCCCCceEEeecccCC---CCCeEEEEEehhhhhcceEEEE
Confidence 23667788887766443333333 2356889999999999999999
Q ss_pred EEecccceeeEEEEE
Q psy15667 270 ASNTAAQARYSSKLQ 284 (286)
Q Consensus 270 a~N~~g~~~~~~~L~ 284 (286)
..|..|.......+.
T Consensus 780 m~~~~~~~~~~i~l~ 794 (873)
T KOG4194|consen 780 MSNTLGTERIHICLL 794 (873)
T ss_pred EEeeccceeeEEEEE
Confidence 999998766655543
No 7
>KOG4221|consensus
Probab=99.94 E-value=1.7e-25 Score=205.34 Aligned_cols=231 Identities=27% Similarity=0.476 Sum_probs=174.7
Q ss_pred CCeeEeccccccccCCCcEEEEEEeecCCCCeeEEeeCCEEcCCCCeeEeceEEecccceeEEEEEcccccCCCeEEEEE
Q psy15667 2 PPILTYSFIEQTLQPGPAVSLKCIASGNPTPDIGWTLDGFELPTNNRFVIGQFVSGHGDVISHVNISHVTVEDGGEYACV 81 (286)
Q Consensus 2 ~p~~~~~~~~~~~~~G~~~~l~C~~~g~p~p~v~W~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~I~~~~~~D~G~Y~C~ 81 (286)
.+.|...+.+.++..|+++.|.|.+.+.|.|.+.|.+|..+|+.+.|++. ..+| .|.|.+++..|.|.|+|.
T Consensus 140 ~~~f~~~~~~~t~~~g~ta~f~c~vn~e~~p~i~w~kn~~pl~~~~r~i~----lpsG----~L~I~~~qp~d~g~yrc~ 211 (1381)
T KOG4221|consen 140 LADFALQPESTTLLYGQTALFSCEVNAEPVPTIMWLKNDQPLPLDSRVIV----LPSG----ALEISGLQPSDTGEYRCV 211 (1381)
T ss_pred cCccccCccceeEecCCcEEEEEEEcCccCceeEEecccccccCCCcEEE----cCCC----cEEecccccCCCceEEEE
Confidence 57788889999999999999999999999999999999999987777653 2233 388999999999999999
Q ss_pred EEcCCEE-----EEEe---------------------------------cCCCCCeeEEEeeCCccCcCCC------Ccc
Q psy15667 82 AENRAGT-----CEIT---------------------------------PYDSGPYLIAWFKDGRQIPGRT------SST 117 (286)
Q Consensus 82 a~n~~g~-----~~~~---------------------------------~~~~~~~~~~W~~~g~~l~~~~------~~~ 117 (286)
+++.... ++++ ....+.+.|.|+|||..+.... ..+
T Consensus 212 vt~g~~~r~S~~a~ltv~s~~~~~~~~~fl~~p~~~~v~~g~~v~leCvvs~~p~p~v~Wlrng~~i~~ds~rivl~g~~ 291 (1381)
T KOG4221|consen 212 VTGGASQRTSNEAELTVLSDPGALNKLVFLDEPSNAVVVEGDDVVLECVVSGVPKPSVKWLRNGEKISVDSYRIVLVGGS 291 (1381)
T ss_pred EecCCcCCccceeEEEecCCcccccceeeecCCCccccccCCcEEEEEEecCCCCCceEEeeCCeeeeecceEEEEeccc
Confidence 9875421 1111 0112357899999999886542 357
Q ss_pred eEEEccCCCCCCeeEEEEEEcCCcceeeeeeEEEEcCCCceecCCc-eEEecCCCEEEEeeEeeecCCeEEEEEcCCccc
Q psy15667 118 SLVINPVGREDRGIYQCIARRSDGDVAQGSAELQLGGLPYVRLIPK-VTAIDGEGLSIKCPVAGYPIEEVHWEKVPPKIE 196 (286)
Q Consensus 118 ~l~i~~v~~~d~G~Y~C~a~~~~g~~~~~~~~l~v~~~~~~~~~~~-~~~~~g~~~~l~c~~~~~p~~~v~w~~~~~~~~ 196 (286)
.|.|.++...|+|.|+|.|.|..-.. .+.+.|+|..+|.+...+. ....+
T Consensus 292 slliS~a~~~dSg~YtC~Atn~~D~i-dasaev~V~a~P~~~~~p~~l~A~e---------------------------- 342 (1381)
T KOG4221|consen 292 SLLISNATDDDSGKYTCRATNTNDSI-DASAEVTVLAPPGFTKAPTTLVAHE---------------------------- 342 (1381)
T ss_pred ceEEeccccccCceEEEEecCCCccc-ccceEEEEEcCCCCCCCCcceeeee----------------------------
Confidence 89999999999999999999853332 4567888877765543332 22223
Q ss_pred ccccccCCCCCCCeEEEEEeeecCCCCCeEEEEeCCeeCCCCCCceeeecCCCeeeEEEcccCCCCCeEEEEEEEecccc
Q psy15667 197 SFAFPFDGLPEGARTRVICGVTHGDPPLTIRWLKDGKPLSPRFPVNVSDLDSFSSLLSINSVSAAHSGEYTCVASNTAAQ 276 (286)
Q Consensus 197 ~~~~~~~~~~~g~~~~l~c~~~~~~p~~~~~W~~~g~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~N~~g~ 276 (286)
+..+.|.|.+. |.|.|.+.|+|+|..+.+...+++.. .+.|.|..+-..|.|-|.|.|.|.+|.
T Consensus 343 -----------~~die~ec~~~-g~p~p~v~w~kNgd~~ipsdy~ki~~----~~~lrIlgi~~sdeg~yQcvaen~~G~ 406 (1381)
T KOG4221|consen 343 -----------SMDIEFECPVS-GKPIPTVRWYKNGDRIIPSDYFKIVG----GGNLRILGIVKSDEGFYQCVAENDAGS 406 (1381)
T ss_pred -----------ccceeEeCCCC-CCCcceEEEEecCcccCcccceEecC----CCCcEEEEEecccchhhhhhhccCccc
Confidence 45555555543 55788899999999887765555432 223889999999999999999999999
Q ss_pred eeeEEEEEE
Q psy15667 277 ARYSSKLQV 285 (286)
Q Consensus 277 ~~~~~~L~V 285 (286)
+...+.|.|
T Consensus 407 a~a~a~l~v 415 (1381)
T KOG4221|consen 407 AQAAAQLEV 415 (1381)
T ss_pred ccchhhhee
Confidence 999888854
No 8
>KOG4221|consensus
Probab=99.89 E-value=1.7e-21 Score=179.24 Aligned_cols=236 Identities=25% Similarity=0.385 Sum_probs=159.0
Q ss_pred eeEeccccccccCCCcEEEEEEeecC--CCCeeEEeeCCEEcCCC--CeeEeceEEecccceeEEEEEccccc-----CC
Q psy15667 4 ILTYSFIEQTLQPGPAVSLKCIASGN--PTPDIGWTLDGFELPTN--NRFVIGQFVSGHGDVISHVNISHVTV-----ED 74 (286)
Q Consensus 4 ~~~~~~~~~~~~~G~~~~l~C~~~g~--p~p~v~W~~~~~~l~~~--~~~~~~~~~~~~~~~~~~l~I~~~~~-----~D 74 (286)
.|...+.|. .+|..+.|.|..... +.+.+.|.+||..|... .|.. + -.+|. |.|.++.. .|
T Consensus 43 ~f~~ep~d~--~~~~svlLecs~~~~~~~~~~i~wkkDg~~l~e~~d~~~~--~--LsNgS----l~i~~v~~~kh~~~~ 112 (1381)
T KOG4221|consen 43 QFLLEPSDA--MEGSSVLLECSAYAAGGTSVKIEWKKDGSQLNEVYDDRRQ--L--LSNGS----LYISSVLASKHNKVD 112 (1381)
T ss_pred eEEeccccc--ccccceEEeccccccCCCCeeEEEccCchhhhhhhhhHHh--h--ccCCc----eeEeeeccccccccc
Confidence 355555544 889999999976544 47899999999876432 2211 1 12343 55666655 89
Q ss_pred CeEEEEEEEcC-CEEE-----EE---------------------------ecCCCCCeeEEEeeCCccCcCCC-----Cc
Q psy15667 75 GGEYACVAENR-AGTC-----EI---------------------------TPYDSGPYLIAWFKDGRQIPGRT-----SS 116 (286)
Q Consensus 75 ~G~Y~C~a~n~-~g~~-----~~---------------------------~~~~~~~~~~~W~~~g~~l~~~~-----~~ 116 (286)
.|.|+|.|.-. .|.+ .+ .....+-+.+.|.||..++.... .+
T Consensus 113 eg~Yqc~atv~~~gsi~Sr~a~v~~a~~~~f~~~~~~~t~~~g~ta~f~c~vn~e~~p~i~w~kn~~pl~~~~r~i~lps 192 (1381)
T KOG4221|consen 113 EGVYQCLATVEDVGSILSRTAKVALAGLADFALQPESTTLLYGQTALFSCEVNAEPVPTIMWLKNDQPLPLDSRVIVLPS 192 (1381)
T ss_pred CceEEEEEEccccceeecceEEEEecccCccccCccceeEecCCcEEEEEEEcCccCceeEEecccccccCCCcEEEcCC
Confidence 99999999765 3321 11 11112234699999999775432 46
Q ss_pred ceEEEccCCCCCCeeEEEEEEcCCcceeeeeeEEEEcCCCceecCCceEEecCCCEEEEeeEeeecCCeEEEEEcCCccc
Q psy15667 117 TSLVINPVGREDRGIYQCIARRSDGDVAQGSAELQLGGLPYVRLIPKVTAIDGEGLSIKCPVAGYPIEEVHWEKVPPKIE 196 (286)
Q Consensus 117 ~~l~i~~v~~~d~G~Y~C~a~~~~g~~~~~~~~l~v~~~~~~~~~~~~~~~~g~~~~l~c~~~~~p~~~v~w~~~~~~~~ 196 (286)
+.|.|.++.+.|.|.|.|.+.++.....+..+.|+|..-+.... .+. .-.
T Consensus 193 G~L~I~~~qp~d~g~yrc~vt~g~~~r~S~~a~ltv~s~~~~~~------------~~~--fl~---------------- 242 (1381)
T KOG4221|consen 193 GALEISGLQPSDTGEYRCVVTGGASQRTSNEAELTVLSDPGALN------------KLV--FLD---------------- 242 (1381)
T ss_pred CcEEecccccCCCceEEEEEecCCcCCccceeEEEecCCccccc------------cee--eec----------------
Confidence 88999999999999999999998766556677888753221100 000 000
Q ss_pred ccccccCCCCCCCeEEEEEeeecCCCCCeEEEEeCCeeCCCCCCceeeecCCCeeeEEEcccCCCCCeEEEEEEEecccc
Q psy15667 197 SFAFPFDGLPEGARTRVICGVTHGDPPLTIRWLKDGKPLSPRFPVNVSDLDSFSSLLSINSVSAAHSGEYTCVASNTAAQ 276 (286)
Q Consensus 197 ~~~~~~~~~~~g~~~~l~c~~~~~~p~~~~~W~~~g~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~N~~g~ 276 (286)
......+.+|+.+.|.|.++ |.|.|++.|.|||..+.-+. +.+... ..+.|.|.+++..|+|.|+|.|.|....
T Consensus 243 --~p~~~~v~~g~~v~leCvvs-~~p~p~v~Wlrng~~i~~ds-~rivl~--g~~slliS~a~~~dSg~YtC~Atn~~D~ 316 (1381)
T KOG4221|consen 243 --EPSNAVVVEGDDVVLECVVS-GVPKPSVKWLRNGEKISVDS-YRIVLV--GGSSLLISNATDDDSGKYTCRATNTNDS 316 (1381)
T ss_pred --CCCccccccCCcEEEEEEec-CCCCCceEEeeCCeeeeecc-eEEEEe--cccceEEeccccccCceEEEEecCCCcc
Confidence 00134467888888888774 88999999999999886544 333332 2457889999999999999999996555
Q ss_pred eeeEEEEEE
Q psy15667 277 ARYSSKLQV 285 (286)
Q Consensus 277 ~~~~~~L~V 285 (286)
...++.|.|
T Consensus 317 idasaev~V 325 (1381)
T KOG4221|consen 317 IDASAEVTV 325 (1381)
T ss_pred cccceEEEE
Confidence 555666665
No 9
>PHA02826 IL-1 receptor-like protein; Provisional
Probab=99.84 E-value=2.4e-19 Score=143.80 Aligned_cols=110 Identities=23% Similarity=0.284 Sum_probs=75.5
Q ss_pred ceEEEccCCCCCCeeEEEEEEcCCcceeeeeeEEEEcCCCceecCCceEEecCCCEEEEeeEeeecCCeEEEEEcCCccc
Q psy15667 117 TSLVINPVGREDRGIYQCIARRSDGDVAQGSAELQLGGLPYVRLIPKVTAIDGEGLSIKCPVAGYPIEEVHWEKVPPKIE 196 (286)
Q Consensus 117 ~~l~i~~v~~~d~G~Y~C~a~~~~g~~~~~~~~l~v~~~~~~~~~~~~~~~~g~~~~l~c~~~~~p~~~v~w~~~~~~~~ 196 (286)
..|.|.++..+|+|.|+|.+.|..+.. ...+.|.|...+ ....+.+
T Consensus 98 ~~L~I~~v~~~DsG~Y~C~a~N~~~~~-~~~i~L~V~~~~-----~~~~~~~---------------------------- 143 (227)
T PHA02826 98 ENLWIGNVINIDEGIYICTISSGNICE-ESTIRLTFDSGT-----INYQFNS---------------------------- 143 (227)
T ss_pred CeEEECCCChHHCEEEEEEEEECCcce-EEEEEEEEecCC-----ccceEec----------------------------
Confidence 468888888889999999998876553 334555552211 1122233
Q ss_pred ccccccCCCCCCCeEEEEEeeec----CCCCCeEEEEeCCeeCCCCCCceeeecCCCeeeEEEcccCCCCCeEEEEEEEe
Q psy15667 197 SFAFPFDGLPEGARTRVICGVTH----GDPPLTIRWLKDGKPLSPRFPVNVSDLDSFSSLLSINSVSAAHSGEYTCVASN 272 (286)
Q Consensus 197 ~~~~~~~~~~~g~~~~l~c~~~~----~~p~~~~~W~~~g~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~N 272 (286)
|..+.|.|.+.. +.|.|+++|+|+|+.+....++.+.. .+..|.|.+++.+|+|.|+|.|..
T Consensus 144 -----------G~~v~L~C~~~~~~~~~~p~p~I~WyKng~~l~~~~r~~~~~---~~~~L~I~~V~~~DsG~YtC~a~~ 209 (227)
T PHA02826 144 -----------GKDSKLHCYGTDGISSTFKDYTLTWYKNGNIVLYTDRIQLRN---NNSTLVIKSATHDDSGIYTCNLRF 209 (227)
T ss_pred -----------CCCEEEEeeCCCCccccCCCceEEEEECCEECCCCCCEEEeC---CCCEEEECcCCHHhCEEEEEEEEE
Confidence 444555554432 34678999999999987665544332 245899999999999999999998
Q ss_pred cc
Q psy15667 273 TA 274 (286)
Q Consensus 273 ~~ 274 (286)
..
T Consensus 210 ~~ 211 (227)
T PHA02826 210 NK 211 (227)
T ss_pred eE
Confidence 65
No 10
>KOG4194|consensus
Probab=99.77 E-value=1.1e-17 Score=145.14 Aligned_cols=147 Identities=28% Similarity=0.447 Sum_probs=106.6
Q ss_pred CCCeeEEEeeCCccCcC-------------CC--------CcceEEEccCCCCCCeeEEEEEEcCCcceeeeeeEEEEcC
Q psy15667 96 SGPYLIAWFKDGRQIPG-------------RT--------SSTSLVINPVGREDRGIYQCIARRSDGDVAQGSAELQLGG 154 (286)
Q Consensus 96 ~~~~~~~W~~~g~~l~~-------------~~--------~~~~l~i~~v~~~d~G~Y~C~a~~~~g~~~~~~~~l~v~~ 154 (286)
+.|-.+.|.++...++- +. ....|.+.+|...|+|.|+|.+.|..|...+..+.|+|..
T Consensus 532 asplsi~WR~dnevq~rv~ved~a~~~~q~r~~~~~e~~~~~~~L~L~nVt~td~grYQCVvtN~FGStysqk~KltV~~ 611 (873)
T KOG4194|consen 532 ASPLSIEWRKDNEVQPRVDVEDFATFLSQNRNGTFGEREEYTAILHLDNVTFTDEGRYQCVVTNHFGSTYSQKAKLTVNQ 611 (873)
T ss_pred CCCceeEeeeccccCcccchhcchhhhhhhccCccchhhhhhheeeeeeeecccCceEEEEEecccCcchhheeEEEeec
Confidence 45678999998764321 00 1256889999999999999999999999888899999987
Q ss_pred CCceecC-CceEEecCCCEEEEeeEeeecCCeEEEEEcCCcccccccccCCCCCCCeEEEEEeeecCCCCCeEEEEeCCe
Q psy15667 155 LPYVRLI-PKVTAIDGEGLSIKCPVAGYPIEEVHWEKVPPKIESFAFPFDGLPEGARTRVICGVTHGDPPLTIRWLKDGK 233 (286)
Q Consensus 155 ~~~~~~~-~~~~~~~g~~~~l~c~~~~~p~~~v~w~~~~~~~~~~~~~~~~~~~g~~~~l~c~~~~~~p~~~~~W~~~g~ 233 (286)
.|.+... .++++..|+.+.|.|.+. |.|.|+|.|-|+|.
T Consensus 612 ~PsFtktP~dltl~tg~mArl~CaAt----------------------------------------G~P~PeIawqkdgg 651 (873)
T KOG4194|consen 612 APSFTKTPEDLTLRTGQMARLECAAT----------------------------------------GHPRPEIAWQKDGG 651 (873)
T ss_pred cCccccCcccceeecccceeeeeecc----------------------------------------CCCCcceeehhcCC
Confidence 7765433 345655566666666554 55666666666665
Q ss_pred eC-CCC--CCceeeecCCCeeeEEEcccCCCCCeEEEEEEEecccceeeEEEEEE
Q psy15667 234 PL-SPR--FPVNVSDLDSFSSLLSINSVSAAHSGEYTCVASNTAAQARYSSKLQV 285 (286)
Q Consensus 234 ~~-~~~--~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~N~~g~~~~~~~L~V 285 (286)
.- +.. .+.+.... .....|.+|+.+|.|.|+|.|.|.+|+.+..+.|+|
T Consensus 652 tdFPAA~eRRl~Vmpe---dd~f~Itnvk~eD~GiYtC~A~n~AG~isanAtL~V 703 (873)
T KOG4194|consen 652 TDFPAARERRLHVMPE---DDVFFITNVKIEDQGIYTCTAQNVAGQISANATLTV 703 (873)
T ss_pred CCCchhhhheeeecCC---CCEEEEecccccccceeEEeeeccccceeeceEEEE
Confidence 42 221 12222222 235679999999999999999999999999999987
No 11
>cd05851 Ig3_Contactin-1 Third Ig domain of contactin-1. Ig3_Contactin-1: Third Ig domain of the neural cell adhesion molecule contactin-1. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-1 is differentially expressed in tumor tissues and may through a RhoA mechanism, facilitate invasion and metastasis of human lung adenocarcinoma.
Probab=99.75 E-value=1e-17 Score=114.95 Aligned_cols=81 Identities=31% Similarity=0.528 Sum_probs=70.2
Q ss_pred CCeeEeccccccccCCCcEEEEEEeecCCCCeeEEeeCCEEcCCCCeeEeceEEecccceeEEEEEcccccCCCeEEEEE
Q psy15667 2 PPILTYSFIEQTLQPGPAVSLKCIASGNPTPDIGWTLDGFELPTNNRFVIGQFVSGHGDVISHVNISHVTVEDGGEYACV 81 (286)
Q Consensus 2 ~p~~~~~~~~~~~~~G~~~~l~C~~~g~p~p~v~W~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~I~~~~~~D~G~Y~C~ 81 (286)
||.|...+.++.+.+|+++.|.|.+.|+|.|.+.|+|++.++....++.. .+. .|.|.++..+|+|.|+|.
T Consensus 1 ~p~i~~~~~~~~~~~G~~v~l~C~~~G~P~P~v~W~k~~~~~~~~~~~~~------~~~---~L~I~~v~~~D~G~Y~C~ 71 (88)
T cd05851 1 PADINVKFKDTYALKGQNVTLECFALGNPVPVIRWRKILEPMPATAEISM------SGA---VLKIFNIQPEDEGTYECE 71 (88)
T ss_pred CCceEEccccEEEeCCCcEEEEEEecccCCCEEEEEECCcCCCCCCEEec------CCC---EEEECcCChhhCEEEEEE
Confidence 79999999999999999999999999999999999999988876544321 222 488999999999999999
Q ss_pred EEcCCEEEEE
Q psy15667 82 AENRAGTCEI 91 (286)
Q Consensus 82 a~n~~g~~~~ 91 (286)
|.|..|....
T Consensus 72 A~N~~G~~~~ 81 (88)
T cd05851 72 AENIKGKDKH 81 (88)
T ss_pred EEcCCCceEE
Confidence 9999987654
No 12
>cd05762 Ig8_MLCK Eighth immunoglobulin (Ig)-like domain of human myosin light-chain kinase (MLCK). Ig8_MLCK: the eighth immunoglobulin (Ig)-like domain of human myosin light-chain kinase (MLCK). MLCK is a key regulator of different forms of cell motility involving actin and myosin II. Agonist stimulation of smooth muscle cells increases cytosolic Ca2+, which binds calmodulin. This Ca2+-calmodulin complex in turn binds to and activates MLCK. Activated MLCK leads to the phosphorylation of the 20 kDa myosin regulatory light chain (RLC) of myosin II and the stimulation of actin-activated myosin MgATPase activity. MLCK is widely present in vertebrate tissues; it phosphorylates the 20 kDa RLC of both smooth and nonmuscle myosin II. Phosphorylation leads to the activation of the myosin motor domain and altered structural properties of myosin II. In smooth muscle MLCK it is involved in initiating contraction. In nonmuscle cells, MLCK may participate in cell division and cell motility; it has
Probab=99.71 E-value=1e-16 Score=112.14 Aligned_cols=84 Identities=19% Similarity=0.273 Sum_probs=71.7
Q ss_pred CeeEeccccccccCCCcEEEEEEeecCCCCeeEEeeCCEEcCCCCeeEeceEEecccceeEEEEEcccccCCCeEEEEEE
Q psy15667 3 PILTYSFIEQTLQPGPAVSLKCIASGNPTPDIGWTLDGFELPTNNRFVIGQFVSGHGDVISHVNISHVTVEDGGEYACVA 82 (286)
Q Consensus 3 p~~~~~~~~~~~~~G~~~~l~C~~~g~p~p~v~W~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~I~~~~~~D~G~Y~C~a 82 (286)
|.|...+.+.++.+|+.+.|.|.+.|.|+|.+.|+|||.+|..+.++.+.. . ...+.|.|.++..+|+|.|+|.|
T Consensus 1 p~~~~~p~~~~v~~G~~v~l~C~~~G~p~p~v~W~kdg~~l~~~~~~~~~~----~-~~~s~L~I~~~~~~D~G~Ytc~a 75 (98)
T cd05762 1 PQIIQFPEDMKVRAGESVELFCKVTGTQPITCTWMKFRKQIQEGEGIKIEN----T-ENSSKLTITEGQQEHCGCYTLEV 75 (98)
T ss_pred CceEECCcCEEEECCCEEEEEEEEcccCCCceEEEECCEEecCCCcEEEEe----c-CCeeEEEECCCChhhCEEEEEEE
Confidence 788889999999999999999999999999999999999998666665421 1 11246999999999999999999
Q ss_pred EcCCEEEEE
Q psy15667 83 ENRAGTCEI 91 (286)
Q Consensus 83 ~n~~g~~~~ 91 (286)
.|..|....
T Consensus 76 ~N~~G~~~~ 84 (98)
T cd05762 76 ENKLGSRQA 84 (98)
T ss_pred EcCCCceeE
Confidence 999997653
No 13
>cd05892 Ig_Myotilin_C C-terminal immunoglobulin (Ig)-like domain of myotilin. Ig_Myotilin_C: C-terminal immunoglobulin (Ig)-like domain of myotilin. Mytolin belongs to the palladin-myotilin-myopalladin family. Proteins belonging to the latter family contain multiple Ig-like domains and function as scaffolds, modulating actin cytoskeleton. Myotilin is most abundant in skeletal and cardiac muscle, and is involved in maintaining sarcomere integrity. It binds to alpha-actinin, filamin and actin. Mutations in myotilin lead to muscle disorders.
Probab=99.71 E-value=9.9e-17 Score=106.10 Aligned_cols=73 Identities=25% Similarity=0.363 Sum_probs=58.8
Q ss_pred EEEEeeecCCCCCeEEEEeCCeeCCCC-CCceeeecCCCeeeEEEcccCCCCCeEEEEEEEecccceeeEEEEEE
Q psy15667 212 RVICGVTHGDPPLTIRWLKDGKPLSPR-FPVNVSDLDSFSSLLSINSVSAAHSGEYTCVASNTAAQARYSSKLQV 285 (286)
Q Consensus 212 ~l~c~~~~~~p~~~~~W~~~g~~~~~~-~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~N~~g~~~~~~~L~V 285 (286)
.|.|.+. |.|.|.+.|+|+|..+... .++.+........+|.|.++..+|+|.|+|.|.|.+|.+..++.|.|
T Consensus 2 ~l~C~v~-G~P~P~i~W~k~~~~i~~~~~r~~~~~~~~g~~~L~I~~~~~~D~G~Y~C~A~N~~G~~~~~a~L~V 75 (75)
T cd05892 2 KLECQIS-AIPPPKIFWKRNNEMVQYNTDRISLYQDNSGRVTLLIKNVNKKDAGWYTVSAVNEAGVATCHARLDV 75 (75)
T ss_pred EEEEEEE-ecCCCeEEEEECCEECcCCCCeEEEEEcCCCcEEEEECCCChhhCEEEEEEEEcCcCeEEEEEEEeC
Confidence 5777764 7888999999999988643 44444333333358999999999999999999999999999999986
No 14
>cd05747 Ig5_Titin_like M5, fifth immunoglobulin (Ig)-like domain of human titin C terminus and similar proteins. Ig5_Titin_like: domain similar to the M5, fifth immunoglobulin (Ig)-like domain from the human titin C terminus. Titin (also called connectin) is a fibrous sarcomeric protein specifically found in vertebrate striated muscle. Titin is gigantic; depending on isoform composition it ranges from 2970 to 3700 kDa, and is of a length that spans half a sarcomere. Titin largely consists of multiple repeats of Ig-like and fibronectin type 3 (FN-III)-like domains. Titin connects the ends of myosin thick filaments to Z disks and extends along the thick filament to the H zone, and appears to function similar to an elastic band, keeping the myosin filaments centered in the sarcomere during muscle contraction or stretching.
Probab=99.70 E-value=2.2e-16 Score=109.35 Aligned_cols=85 Identities=27% Similarity=0.472 Sum_probs=72.4
Q ss_pred CCeeEeccccccccCCCcEEEEEEeecCCCCeeEEeeCCEEcCCCCeeEeceEEecccceeEEEEEcccccCCCeEEEEE
Q psy15667 2 PPILTYSFIEQTLQPGPAVSLKCIASGNPTPDIGWTLDGFELPTNNRFVIGQFVSGHGDVISHVNISHVTVEDGGEYACV 81 (286)
Q Consensus 2 ~p~~~~~~~~~~~~~G~~~~l~C~~~g~p~p~v~W~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~I~~~~~~D~G~Y~C~ 81 (286)
||+|...+.++.+.+|+.+.|.|.+.|+|.|.+.|+++|..+..+.++.+.. .. ....|.|.++..+|+|.|+|.
T Consensus 3 ~~~~~~~p~~~~~~~G~~~~L~C~~~g~P~p~v~W~k~g~~l~~~~~~~~~~----~~-~~~~L~i~~~~~~D~G~Y~C~ 77 (92)
T cd05747 3 PATILTKPRSLTVSEGESARFSCDVDGEPAPTVTWMREGQIIVSSQRHQITS----TE-YKSTFEISKVQMSDEGNYTVV 77 (92)
T ss_pred CCcccccCccEEEeCCCcEEEEEEEeecCCCEEEEEECCEECCCCCcEEEEE----cC-CeeEEEECCCCcccCEeEEEE
Confidence 8999999999999999999999999999999999999999987766665421 11 123589999999999999999
Q ss_pred EEcCCEEEEE
Q psy15667 82 AENRAGTCEI 91 (286)
Q Consensus 82 a~n~~g~~~~ 91 (286)
|.|..|....
T Consensus 78 a~N~~G~~~~ 87 (92)
T cd05747 78 VENSEGKQEA 87 (92)
T ss_pred EEcCCCCEeE
Confidence 9999987653
No 15
>cd05745 Ig3_Peroxidasin Third immunoglobulin (Ig)-like domain of peroxidasin. Ig3_Peroxidasin: the third immunoglobulin (Ig)-like domain in peroxidasin. Peroxidasin has a peroxidase domain and interacting extracellular motifs containing four Ig-like domains. It has been suggested that peroxidasin is secreted and has functions related to the stabilization of the extracellular matrix. It may play a part in various other important processes such as removal and destruction of cells which have undergone programmed cell death, and protection of the organism against non-self.
Probab=99.69 E-value=1.8e-16 Score=105.09 Aligned_cols=74 Identities=32% Similarity=0.486 Sum_probs=60.8
Q ss_pred CCCeEEEEEeeecCCCCCeEEEEeCCeeCCCCCCceeeecCCCeeeEEEcccCCCCCeEEEEEEEecccceeeEEEEEE
Q psy15667 207 EGARTRVICGVTHGDPPLTIRWLKDGKPLSPRFPVNVSDLDSFSSLLSINSVSAAHSGEYTCVASNTAAQARYSSKLQV 285 (286)
Q Consensus 207 ~g~~~~l~c~~~~~~p~~~~~W~~~g~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~N~~g~~~~~~~L~V 285 (286)
+|+.+.|.|.+. |.|.|.+.|+|+|..+....+..+. ..+.|.|.++..+|+|.|+|.|.|.+|....++.|.|
T Consensus 1 eG~~v~l~C~~~-g~P~p~i~W~k~g~~~~~~~~~~~~----~~~~L~I~~v~~~D~G~Y~C~A~N~~G~~~~~~~L~V 74 (74)
T cd05745 1 EGQTVDFLCEAQ-GYPQPVIAWTKGGSQLSVDRRHLVL----SSGTLRISRVALHDQGQYECQAVNIVGSQRTVAQLTV 74 (74)
T ss_pred CCCeEEEEeECC-EecCCEEEEEECCEECCCCCCeEEc----cCCeEEEeeCCHHhCEEEEEEEEeCCCceeEEEEEeC
Confidence 477788888764 7888899999999988654433322 2458999999999999999999999999999999986
No 16
>cd05852 Ig5_Contactin-1 Fifth Ig domain of contactin-1. Ig5_Contactin-1: fifth Ig domain of the neural cell adhesion molecule contactin-1. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-1 is differentially expressed in tumor tissues and may through a RhoA mechanism, facilitate invasion and metastasis of human lung adenocarcinoma.
Probab=99.69 E-value=1.9e-16 Score=104.30 Aligned_cols=73 Identities=26% Similarity=0.452 Sum_probs=61.1
Q ss_pred CCeEEEEEeeecCCCCCeEEEEeCCeeCCCCCCceeeecCCCeeeEEEcccCCCCCeEEEEEEEecccceeeEEEEEE
Q psy15667 208 GARTRVICGVTHGDPPLTIRWLKDGKPLSPRFPVNVSDLDSFSSLLSINSVSAAHSGEYTCVASNTAAQARYSSKLQV 285 (286)
Q Consensus 208 g~~~~l~c~~~~~~p~~~~~W~~~g~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~N~~g~~~~~~~L~V 285 (286)
|+.+.|.|.+. |.|.|++.|+|++..+....++.+.. ++.|.|.+++.+|+|.|+|.|.|..|....++.|+|
T Consensus 1 G~~~~l~C~~~-g~P~p~v~W~k~~~~l~~~~r~~~~~----~g~L~I~~v~~~D~G~Y~C~A~N~~G~~~~~~~l~~ 73 (73)
T cd05852 1 GGRVIIECKPK-AAPKPKFSWSKGTELLVNNSRISIWD----DGSLEILNITKLDEGSYTCFAENNRGKANSTGVLSV 73 (73)
T ss_pred CCeEEEEEecc-eeCCCEEEEEeCCEecccCCCEEEcC----CCEEEECcCChhHCEEEEEEEECCCCceeEEEEEEC
Confidence 56778888775 67888999999998876655554432 457999999999999999999999999999999986
No 17
>cd04975 Ig4_SCFR_like Fourth immunoglobulin (Ig)-like domain of stem cell factor receptor (SCFR) and similar proteins. Ig4_SCFR_like; fourth immunoglobulin (Ig)-like domain of stem cell factor receptor (SCFR). In addition to SCFR this group also includes the fourth Ig domain of platelet-derived growth factor receptors (PDGFR), alpha and beta, the fourth Ig domain of macrophage colony stimulating factor (M-CSF), and the Ig domain of the receptor tyrosine kinase KIT. SCFR and the PDGFR alpha and beta have similar organization: an extracellular component having five Ig-like domains, a transmembrane segment, and a cytoplasmic portion having protein tyrosine kinase activity. SCFR and its ligand SCF are critical for normal hematopoiesis, mast cell development, melanocytes and gametogenesis. SCF binds to the second and third Ig-like domains of SCFR, this fourth Ig-like domain participates in SCFR dimerization, which follows ligand binding. Deletion of this fourth SCFR_Ig-like domain abolishes
Probab=99.68 E-value=2.3e-16 Score=110.54 Aligned_cols=82 Identities=24% Similarity=0.404 Sum_probs=62.8
Q ss_pred CCCCCeEEEEEeeecCCCCCeEEEEeCCeeCCCCCCceeeecC----CCeeeEEEcccCCCCCeEEEEEEEecccceeeE
Q psy15667 205 LPEGARTRVICGVTHGDPPLTIRWLKDGKPLSPRFPVNVSDLD----SFSSLLSINSVSAAHSGEYTCVASNTAAQARYS 280 (286)
Q Consensus 205 ~~~g~~~~l~c~~~~~~p~~~~~W~~~g~~~~~~~~~~~~~~~----~~~~~L~i~~v~~~d~G~Y~C~a~N~~g~~~~~ 280 (286)
+.+|+.+.|.|.+....|+|.+.|+|||..+.......+.... .....|.|.+++.+|+|.|+|.|.|..|....+
T Consensus 15 v~~G~~v~L~c~v~g~~P~p~v~W~Kdg~~i~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Ytc~A~N~~G~~~~t 94 (101)
T cd04975 15 VNLGENLNLVVEVEAYPPPPHINWTYDNRTLTNKLTEIVTSENESEYRYVSELKLVRLKESEAGTYTFLASNSDASKSLT 94 (101)
T ss_pred EECCCCEEEEEEEEecCCCCccEEEeCCeeCCCCcceeEEEeccCcceEEEEEEEeecCHhhCeeEEEEEECCCccEEEE
Confidence 4566667777766533778889999999988755433322211 124789999999999999999999999999999
Q ss_pred EEEEEC
Q psy15667 281 SKLQVK 286 (286)
Q Consensus 281 ~~L~V~ 286 (286)
+.|.|+
T Consensus 95 ~~L~V~ 100 (101)
T cd04975 95 FELYVN 100 (101)
T ss_pred EEEEEE
Confidence 999884
No 18
>cd05893 Ig_Palladin_C C-terminal immunoglobulin (Ig)-like domain of palladin. Ig_Palladin_C: C-terminal immunoglobulin (Ig)-like domain of palladin. Palladin belongs to the palladin-myotilin-myopalladin family. Proteins belonging to this family contain multiple Ig-like domains and function as scaffolds, modulating actin cytoskeleton. Palladin binds to alpha-actinin ezrin, vasodilator-stimulated phosphoprotein VASP, SPIN90 (DIP, mDia interacting protein), and Src. Palladin also binds F-actin directly, via its Ig3 domain. Palladin is expressed as several alternatively spliced isoforms, having various combinations of Ig-like domains, in a cell-type-specific manner. It has been suggested that palladin's different Ig-like domains may be specialized for distinct functions.
Probab=99.68 E-value=3.7e-16 Score=103.50 Aligned_cols=73 Identities=27% Similarity=0.381 Sum_probs=57.0
Q ss_pred EEEEeeecCCCCCeEEEEeCCeeCCCC-CCceeeecCCCeeeEEEcccCCCCCeEEEEEEEecccceeeEEEEEE
Q psy15667 212 RVICGVTHGDPPLTIRWLKDGKPLSPR-FPVNVSDLDSFSSLLSINSVSAAHSGEYTCVASNTAAQARYSSKLQV 285 (286)
Q Consensus 212 ~l~c~~~~~~p~~~~~W~~~g~~~~~~-~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~N~~g~~~~~~~L~V 285 (286)
.|.|.+. |.|.|.+.|+|++..+... .++.+.........|.|.++..+|+|.|+|.|.|.+|..+.++.|.|
T Consensus 2 ~l~C~v~-G~P~P~v~W~k~~~~l~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~A~N~~G~~~~~a~L~V 75 (75)
T cd05893 2 RLECRVS-GVPHPQIFWKKENESLTHNTDRVSMHQDNCGYICLLIQGATKEDAGWYTVSAKNEAGIVSCTARLDV 75 (75)
T ss_pred EEEEEEe-EecCCEEEEEECCEECCCCCCeEEEEEcCCCEEEEEECCCCHHHCEEEEEEEEcCCCEEEEEEEEeC
Confidence 5677664 7788899999999888653 33443332222336999999999999999999999999999999986
No 19
>cd05737 Ig_Myomesin_like_C C-temrinal immunoglobulin (Ig)-like domain of myomesin and M-protein. Ig_Myomesin_like_C: domain similar to the C-temrinal immunoglobulin (Ig)-like domain of myomesin and M-protein. Myomesin and M-protein are both structural proteins localized to the M-band, a transverse structure in the center of the sarcomere, and are candidates for M-band bridges. Both proteins are modular, consisting mainly of repetitive Ig-like and fibronectin type III (FnIII) domains. Myomesin is expressed in all types of vertebrate striated muscle; M-protein has a muscle-type specific expression pattern. Myomesin is present in both slow and fast fibers; M-protein is present only in fast fibers. It has been suggested that myomesin acts as a molecular spring with alternative splicing as a means of modifying its elasticity.
Probab=99.66 E-value=9.7e-16 Score=106.13 Aligned_cols=80 Identities=29% Similarity=0.420 Sum_probs=62.2
Q ss_pred CCCCCeEEEEEeeecCCCCCeEEEEeCCeeCCCCCCceeeecCCCeeeEEEcccCCCCCeEEEEEEEecccceeeEEEEE
Q psy15667 205 LPEGARTRVICGVTHGDPPLTIRWLKDGKPLSPRFPVNVSDLDSFSSLLSINSVSAAHSGEYTCVASNTAAQARYSSKLQ 284 (286)
Q Consensus 205 ~~~g~~~~l~c~~~~~~p~~~~~W~~~g~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~N~~g~~~~~~~L~ 284 (286)
+.+|+.+.|.|.+. |.|.|.+.|+|+|..+....++.+.........|.|.++..+|+|.|+|.|.|..|.....+.|.
T Consensus 13 v~~G~~v~L~C~v~-G~P~p~v~W~k~g~~l~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~~~v~ 91 (92)
T cd05737 13 IMEGKTLNLTCTVF-GDPDPEVSWLKNDQALALSDHYNVKVEQGKYASLTIKGVSSEDSGKYGIVVKNKYGGETVDVTVS 91 (92)
T ss_pred EeCCCcEEEEEEEE-ecCCCeEEEEECCEECccCCCEEEEEcCCCEEEEEEccCChhhCEEEEEEEEECCCcceEEEEEe
Confidence 44566666666553 66778889999999887666555543323345799999999999999999999999999998887
Q ss_pred E
Q psy15667 285 V 285 (286)
Q Consensus 285 V 285 (286)
|
T Consensus 92 v 92 (92)
T cd05737 92 V 92 (92)
T ss_pred C
Confidence 6
No 20
>cd05894 Ig_C5_MyBP-C C5 immunoglobulin (Ig) domain of cardiac myosin binding protein C (MyBP-C). Ig_C5_MyBP_C : the C5 immunoglobulin (Ig) domain of cardiac myosin binding protein C (MyBP-C). MyBP_C consists of repeated domains, Ig and fibronectin type 3, and various linkers. Three isoforms of MYBP_C exist and are included in this group: cardiac(c), and fast and slow skeletal muscle (s) MyBP_C. cMYBP_C has insertions between and inside domains and an additional cardiac-specific Ig domain at the N-terminus. For cMYBP_C an interaction has been demonstrated between this C5 domain and the Ig C8 domain.
Probab=99.66 E-value=1.3e-15 Score=103.83 Aligned_cols=79 Identities=22% Similarity=0.340 Sum_probs=62.2
Q ss_pred CCCCCeEEEEEeeecCCCCCeEEEEeCCeeCCCC-CCceeeecCCCeeeEEEcccCCCCCeEEEEEEEecccceeeEEEE
Q psy15667 205 LPEGARTRVICGVTHGDPPLTIRWLKDGKPLSPR-FPVNVSDLDSFSSLLSINSVSAAHSGEYTCVASNTAAQARYSSKL 283 (286)
Q Consensus 205 ~~~g~~~~l~c~~~~~~p~~~~~W~~~g~~~~~~-~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~N~~g~~~~~~~L 283 (286)
+.+|+.+.|.|.+. |.|+|.+.|+|+++.+... .++.+... .....|.|.++..+|+|.|+|.|.|..|+...++.|
T Consensus 7 v~~G~~v~l~c~~~-G~P~P~v~W~k~~~~i~~~~~r~~~~~~-~~~~~L~I~~~~~~D~G~Y~c~a~N~~G~~~~~~~l 84 (86)
T cd05894 7 VVAGNKLRLDVPIS-GEPAPTVTWSRGDKAFTETEGRVRVESY-KDLSSFVIEGAEREDEGVYTITVTNPVGEDHASLFV 84 (86)
T ss_pred EEcCCEEEEEeeEe-ecCCCeEEEEECCEECccCCCeEEEEEc-CCeEEEEECCCccCcCEEEEEEEEeCCCcEEEEEEE
Confidence 45667777777664 7788889999999988654 34444332 235689999999999999999999999999999988
Q ss_pred EE
Q psy15667 284 QV 285 (286)
Q Consensus 284 ~V 285 (286)
.|
T Consensus 85 ~V 86 (86)
T cd05894 85 KV 86 (86)
T ss_pred EC
Confidence 76
No 21
>cd05737 Ig_Myomesin_like_C C-temrinal immunoglobulin (Ig)-like domain of myomesin and M-protein. Ig_Myomesin_like_C: domain similar to the C-temrinal immunoglobulin (Ig)-like domain of myomesin and M-protein. Myomesin and M-protein are both structural proteins localized to the M-band, a transverse structure in the center of the sarcomere, and are candidates for M-band bridges. Both proteins are modular, consisting mainly of repetitive Ig-like and fibronectin type III (FnIII) domains. Myomesin is expressed in all types of vertebrate striated muscle; M-protein has a muscle-type specific expression pattern. Myomesin is present in both slow and fast fibers; M-protein is present only in fast fibers. It has been suggested that myomesin acts as a molecular spring with alternative splicing as a means of modifying its elasticity.
Probab=99.66 E-value=8.6e-16 Score=106.39 Aligned_cols=79 Identities=24% Similarity=0.507 Sum_probs=64.0
Q ss_pred cccccccCCCcEEEEEEeecCCCCeeEEeeCCEEcCCCCeeEeceEEecccceeEEEEEcccccCCCeEEEEEEEcCCEE
Q psy15667 9 FIEQTLQPGPAVSLKCIASGNPTPDIGWTLDGFELPTNNRFVIGQFVSGHGDVISHVNISHVTVEDGGEYACVAENRAGT 88 (286)
Q Consensus 9 ~~~~~~~~G~~~~l~C~~~g~p~p~v~W~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~I~~~~~~D~G~Y~C~a~n~~g~ 88 (286)
+..+++.+|+++.|.|.+.|.|.|++.|+|++.++..+.++.+.. ..+. ...|.|.+++.+|+|.|+|.|.|..|.
T Consensus 8 p~~v~v~~G~~v~L~C~v~G~P~p~v~W~k~g~~l~~~~~~~~~~---~~~~-~~~L~I~~v~~~D~G~Y~C~a~N~~G~ 83 (92)
T cd05737 8 PDVVTIMEGKTLNLTCTVFGDPDPEVSWLKNDQALALSDHYNVKV---EQGK-YASLTIKGVSSEDSGKYGIVVKNKYGG 83 (92)
T ss_pred CceEEEeCCCcEEEEEEEEecCCCeEEEEECCEECccCCCEEEEE---cCCC-EEEEEEccCChhhCEEEEEEEEECCCc
Confidence 344589999999999999999999999999999997766654321 1121 236999999999999999999999887
Q ss_pred EEE
Q psy15667 89 CEI 91 (286)
Q Consensus 89 ~~~ 91 (286)
...
T Consensus 84 ~~~ 86 (92)
T cd05737 84 ETV 86 (92)
T ss_pred ceE
Confidence 653
No 22
>cd05762 Ig8_MLCK Eighth immunoglobulin (Ig)-like domain of human myosin light-chain kinase (MLCK). Ig8_MLCK: the eighth immunoglobulin (Ig)-like domain of human myosin light-chain kinase (MLCK). MLCK is a key regulator of different forms of cell motility involving actin and myosin II. Agonist stimulation of smooth muscle cells increases cytosolic Ca2+, which binds calmodulin. This Ca2+-calmodulin complex in turn binds to and activates MLCK. Activated MLCK leads to the phosphorylation of the 20 kDa myosin regulatory light chain (RLC) of myosin II and the stimulation of actin-activated myosin MgATPase activity. MLCK is widely present in vertebrate tissues; it phosphorylates the 20 kDa RLC of both smooth and nonmuscle myosin II. Phosphorylation leads to the activation of the myosin motor domain and altered structural properties of myosin II. In smooth muscle MLCK it is involved in initiating contraction. In nonmuscle cells, MLCK may participate in cell division and cell motility; it has
Probab=99.66 E-value=1.1e-15 Score=106.85 Aligned_cols=80 Identities=26% Similarity=0.408 Sum_probs=65.8
Q ss_pred CCCCCeEEEEEeeecCCCCCeEEEEeCCeeCCCCCCceeeecCCCeeeEEEcccCCCCCeEEEEEEEecccceeeEEEEE
Q psy15667 205 LPEGARTRVICGVTHGDPPLTIRWLKDGKPLSPRFPVNVSDLDSFSSLLSINSVSAAHSGEYTCVASNTAAQARYSSKLQ 284 (286)
Q Consensus 205 ~~~g~~~~l~c~~~~~~p~~~~~W~~~g~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~N~~g~~~~~~~L~ 284 (286)
+..|+.+.|.|.+. |.|++.+.|+|+|+.+....++.+... .....|.|.++..+|+|.|+|.|.|.+|...+++.|.
T Consensus 12 v~~G~~v~l~C~~~-G~p~p~v~W~kdg~~l~~~~~~~~~~~-~~~s~L~I~~~~~~D~G~Ytc~a~N~~G~~~~~~~l~ 89 (98)
T cd05762 12 VRAGESVELFCKVT-GTQPITCTWMKFRKQIQEGEGIKIENT-ENSSKLTITEGQQEHCGCYTLEVENKLGSRQAQVNLT 89 (98)
T ss_pred EECCCEEEEEEEEc-ccCCCceEEEECCEEecCCCcEEEEec-CCeeEEEECCCChhhCEEEEEEEEcCCCceeEEEEEE
Confidence 55677777777764 788899999999999976666555433 2356899999999999999999999999999999998
Q ss_pred EC
Q psy15667 285 VK 286 (286)
Q Consensus 285 V~ 286 (286)
|.
T Consensus 90 V~ 91 (98)
T cd05762 90 VV 91 (98)
T ss_pred Ee
Confidence 73
No 23
>PF07679 I-set: Immunoglobulin I-set domain; InterPro: IPR013098 The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulphide bonds. There are two types of light chains: kappa and lambda, each composed of a constant domain (CL) and a variable domain (VL). There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are highly modular proteins, in which the variable and constant domains have clear, conserved sequence patterns. The domains in Ig and Ig-like molecules are grouped into four types: V-set (variable; IPR013106 from INTERPRO), C1-set (constant-1; IPR003597 from INTERPRO), C2-set (constant-2; IPR008424 from INTERPRO) and I-set (intermediate; IPR013098 from INTERPRO) []. Structural studies have shown that these domains share a common core Greek-key beta-sandwich structure, with the types differing in the number of strands in the beta-sheets as well as in their sequence patterns [, ]. Immunoglobulin-like domains that are related in both sequence and structure can be found in several diverse protein families. Ig-like domains are involved in a variety of functions, including cell-cell recognition, cell-surface receptors, muscle structure and the immune system []. This entry represents I-set domains, which are found in several cell adhesion molecules, including vascular (VCAM), intercellular (ICAM), neural (NCAM) and mucosal addressin (MADCAM) cell adhesion molecules, as well as junction adhesion molecules (JAM). I-set domains are also present in several other diverse protein families, including several tyrosine-protein kinase receptors, the hemolymph protein hemolin, the muscle proteins titin, telokin, and twitchin, the neuronal adhesion molecule axonin-1 [], and the signalling molecule semaphorin 4D that is involved in axonal guidance, immune function and angiogenesis [].; PDB: 3MTR_A 2EDK_A 3DMK_B 1KOA_A 3NCM_A 2NCM_A 2V9Q_A 2CR3_A 3QQN_A 3QR2_A ....
Probab=99.65 E-value=1.4e-15 Score=104.92 Aligned_cols=84 Identities=37% Similarity=0.661 Sum_probs=73.4
Q ss_pred CeeEeccccccccCCCcEEEEEEeecCCCCeeEEeeCCEEcCCCCeeEeceEEecccceeEEEEEcccccCCCeEEEEEE
Q psy15667 3 PILTYSFIEQTLQPGPAVSLKCIASGNPTPDIGWTLDGFELPTNNRFVIGQFVSGHGDVISHVNISHVTVEDGGEYACVA 82 (286)
Q Consensus 3 p~~~~~~~~~~~~~G~~~~l~C~~~g~p~p~v~W~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~I~~~~~~D~G~Y~C~a 82 (286)
|.|...+.++.+.+|++++|.|.+.|.|.|++.|++++..|..+.++.+... + ....|.|.++..+|+|.|+|.|
T Consensus 1 P~~~~~~~~~~v~~G~~~~l~c~~~~~p~~~v~W~~~~~~l~~~~~~~~~~~----~-~~~~L~I~~v~~~D~G~Y~C~~ 75 (90)
T PF07679_consen 1 PVFTKKPKDVTVKEGESVTLECEVSGNPPPTVTWYKNGRPLTSSQRYQIESD----G-GSSSLTIKNVTREDAGTYTCVA 75 (90)
T ss_dssp EEEEEESSEEEEETTSEEEEEEEEEESSSSEEEEEETTEEEESSSSEEEEEE----T-TEEEEEESSESGGGSEEEEEEE
T ss_pred CEEEEecCCEEEeCCCEEEEEEEEEeCCCCcccccccccceeeeeeeeeecc----c-ceeEEccCCCChhhCEEEEEEE
Confidence 7899999999999999999999999999999999999999988777765321 1 3457999999999999999999
Q ss_pred EcCCEEEEE
Q psy15667 83 ENRAGTCEI 91 (286)
Q Consensus 83 ~n~~g~~~~ 91 (286)
.|..|....
T Consensus 76 ~n~~g~~~~ 84 (90)
T PF07679_consen 76 SNSSGEATA 84 (90)
T ss_dssp EETTEEEEE
T ss_pred EECCCEEEE
Confidence 999987654
No 24
>cd05744 Ig_Myotilin_C_like Immunoglobulin (Ig)-like domain of myotilin, palladin, and myopalladin. Ig_Myotilin_like_C: immunoglobulin (Ig)-like domain in myotilin, palladin, and myopalladin. Myotilin, palladin, and myopalladin function as scaffolds that regulate actin organization. Myotilin and myopalladin are most abundant in skeletal and cardiac muscle; palladin is ubiquitously expressed in the organs of developing vertebrates and plays a key role in cellular morphogenesis. The three family members each interact with specific molecular partners: all three bind to alpha-actinin; in addition, palladin also binds to vasodilator-stimulated phosphoprotein (VASP) and ezrin, myotilin binds to filamin and actin, and myopalladin also binds to nebulin and cardiac ankyrin repeat protein (CARP).
Probab=99.65 E-value=2e-15 Score=100.20 Aligned_cols=73 Identities=26% Similarity=0.358 Sum_probs=57.7
Q ss_pred EEEEeeecCCCCCeEEEEeCCeeCCCC-CCceeeecCCCeeeEEEcccCCCCCeEEEEEEEecccceeeEEEEEE
Q psy15667 212 RVICGVTHGDPPLTIRWLKDGKPLSPR-FPVNVSDLDSFSSLLSINSVSAAHSGEYTCVASNTAAQARYSSKLQV 285 (286)
Q Consensus 212 ~l~c~~~~~~p~~~~~W~~~g~~~~~~-~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~N~~g~~~~~~~L~V 285 (286)
.|.|.+. |.|.|.+.|+|++..+... .++.+.........|.|.+++.+|+|.|+|.|.|.+|....++.|.|
T Consensus 2 ~L~C~v~-G~P~P~v~W~k~~~~i~~~~~r~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~~~~~l~v 75 (75)
T cd05744 2 RLECRVS-AIPPPQIFWKKNNEMLTYNTDRISLYQDNCGRICLLIQNANKEDAGWYTVSAVNEAGVVSCNARLDV 75 (75)
T ss_pred EEEEEEe-ecCCCeEEEEECCEECCCCCCcEEEEEcCCCeEEEEECCCCcccCEEEEEEEEcCCCcEEEEEEEeC
Confidence 5777764 7788899999999988643 34444332223347999999999999999999999999999999976
No 25
>cd04975 Ig4_SCFR_like Fourth immunoglobulin (Ig)-like domain of stem cell factor receptor (SCFR) and similar proteins. Ig4_SCFR_like; fourth immunoglobulin (Ig)-like domain of stem cell factor receptor (SCFR). In addition to SCFR this group also includes the fourth Ig domain of platelet-derived growth factor receptors (PDGFR), alpha and beta, the fourth Ig domain of macrophage colony stimulating factor (M-CSF), and the Ig domain of the receptor tyrosine kinase KIT. SCFR and the PDGFR alpha and beta have similar organization: an extracellular component having five Ig-like domains, a transmembrane segment, and a cytoplasmic portion having protein tyrosine kinase activity. SCFR and its ligand SCF are critical for normal hematopoiesis, mast cell development, melanocytes and gametogenesis. SCF binds to the second and third Ig-like domains of SCFR, this fourth Ig-like domain participates in SCFR dimerization, which follows ligand binding. Deletion of this fourth SCFR_Ig-like domain abolishes
Probab=99.64 E-value=1.5e-15 Score=106.34 Aligned_cols=82 Identities=18% Similarity=0.312 Sum_probs=62.8
Q ss_pred cccccCCCcEEEEEEeec-CCCCeeEEeeCCEEcCCCCeeEeceEEecccceeEEEEEcccccCCCeEEEEEEEcCCEEE
Q psy15667 11 EQTLQPGPAVSLKCIASG-NPTPDIGWTLDGFELPTNNRFVIGQFVSGHGDVISHVNISHVTVEDGGEYACVAENRAGTC 89 (286)
Q Consensus 11 ~~~~~~G~~~~l~C~~~g-~p~p~v~W~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~I~~~~~~D~G~Y~C~a~n~~g~~ 89 (286)
.+.+.+|+++.|.|.+.| .|+|.+.|+|||.+|..+.+..+.............|.|.++..+|+|.|+|.|.|..|..
T Consensus 12 ~~~v~~G~~v~L~c~v~g~~P~p~v~W~Kdg~~i~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Ytc~A~N~~G~~ 91 (101)
T cd04975 12 TIFVNLGENLNLVVEVEAYPPPPHINWTYDNRTLTNKLTEIVTSENESEYRYVSELKLVRLKESEAGTYTFLASNSDASK 91 (101)
T ss_pred eEEEECCCCEEEEEEEEecCCCCccEEEeCCeeCCCCcceeEEEeccCcceEEEEEEEeecCHhhCeeEEEEEECCCccE
Confidence 557899999999999999 9999999999999998654433211000000112469999999999999999999999976
Q ss_pred EEe
Q psy15667 90 EIT 92 (286)
Q Consensus 90 ~~~ 92 (286)
+.+
T Consensus 92 ~~t 94 (101)
T cd04975 92 SLT 94 (101)
T ss_pred EEE
Confidence 543
No 26
>cd05851 Ig3_Contactin-1 Third Ig domain of contactin-1. Ig3_Contactin-1: Third Ig domain of the neural cell adhesion molecule contactin-1. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-1 is differentially expressed in tumor tissues and may through a RhoA mechanism, facilitate invasion and metastasis of human lung adenocarcinoma.
Probab=99.64 E-value=1.4e-15 Score=104.29 Aligned_cols=76 Identities=24% Similarity=0.435 Sum_probs=58.3
Q ss_pred CCCCCeEEEEEeeecCCCCCeEEEEeCCeeCCCCCCceeeecCCCeeeEEEcccCCCCCeEEEEEEEecccceeeEEEEE
Q psy15667 205 LPEGARTRVICGVTHGDPPLTIRWLKDGKPLSPRFPVNVSDLDSFSSLLSINSVSAAHSGEYTCVASNTAAQARYSSKLQ 284 (286)
Q Consensus 205 ~~~g~~~~l~c~~~~~~p~~~~~W~~~g~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~N~~g~~~~~~~L~ 284 (286)
+.+|+.+.|.|.+. |.|.|.+.|+|++..+....++ .. .+..|.|.++..+|+|.|+|.|.|.+|...+++.|.
T Consensus 13 ~~~G~~v~l~C~~~-G~P~P~v~W~k~~~~~~~~~~~--~~---~~~~L~I~~v~~~D~G~Y~C~A~N~~G~~~~~~~l~ 86 (88)
T cd05851 13 ALKGQNVTLECFAL-GNPVPVIRWRKILEPMPATAEI--SM---SGAVLKIFNIQPEDEGTYECEAENIKGKDKHQARVY 86 (88)
T ss_pred EeCCCcEEEEEEec-ccCCCEEEEEECCcCCCCCCEE--ec---CCCEEEECcCChhhCEEEEEEEEcCCCceEEEEEEE
Confidence 44566666666653 6777788888888766543222 11 135799999999999999999999999999999999
Q ss_pred EC
Q psy15667 285 VK 286 (286)
Q Consensus 285 V~ 286 (286)
|+
T Consensus 87 V~ 88 (88)
T cd05851 87 VQ 88 (88)
T ss_pred EC
Confidence 86
No 27
>cd05869 Ig5_NCAM-1 Fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM). Ig5_NCAM-1: The fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM). NCAM plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM) and heterophilic (NCAM-non-NCAM) interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves Ig1, Ig2, and Ig3. By this model, Ig1 and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM molecules expressed on the surface of opposing cells (tr
Probab=99.64 E-value=2.3e-15 Score=105.27 Aligned_cols=84 Identities=26% Similarity=0.533 Sum_probs=65.5
Q ss_pred CCeeEeccccccccCCCcEEEEEEeecCCCCeeEEeeCCEEcCCCC-----eeEeceEEecccceeEEEEEcccccCCCe
Q psy15667 2 PPILTYSFIEQTLQPGPAVSLKCIASGNPTPDIGWTLDGFELPTNN-----RFVIGQFVSGHGDVISHVNISHVTVEDGG 76 (286)
Q Consensus 2 ~p~~~~~~~~~~~~~G~~~~l~C~~~g~p~p~v~W~~~~~~l~~~~-----~~~~~~~~~~~~~~~~~l~I~~~~~~D~G 76 (286)
.|+|.+.+....+..|+.++|.|.+.|.|.|.++|++++..+.... ++.+. .......|.|.++..+|+|
T Consensus 2 ~p~i~~~~~~~~~~~g~~v~l~C~~~G~P~P~v~W~~~~~~~~~~~~~~~~~~~v~-----~~~~~~~L~I~~v~~~D~G 76 (97)
T cd05869 2 KPKITYVENQTAMELEEQITLTCEASGDPIPSITWRTSTRNISSEEKTLDGHIVVR-----SHARVSSLTLKYIQYTDAG 76 (97)
T ss_pred CceEEEccCceEEEcCCCEEEEEEeeEeCCCEEEEEECCccccCCccccCccEEEE-----cCccEEEEEEecCccCcCE
Confidence 4788877766667778999999999999999999999988775322 22221 1112246999999999999
Q ss_pred EEEEEEEcCCEEEE
Q psy15667 77 EYACVAENRAGTCE 90 (286)
Q Consensus 77 ~Y~C~a~n~~g~~~ 90 (286)
.|+|.|.|..|..+
T Consensus 77 ~Y~C~A~N~~G~~~ 90 (97)
T cd05869 77 EYLCTASNTIGQDS 90 (97)
T ss_pred EEEEEEecCCCCee
Confidence 99999999988754
No 28
>cd05723 Ig4_Neogenin Fourth immunoglobulin (Ig)-like domain in neogenin and similar proteins. Ig4_Neogenin: fourth immunoglobulin (Ig)-like domain in neogenin and related proteins. Neogenin is a cell surface protein which is expressed in the developing nervous system of vertebrate embryos in the growing nerve cells. It is also expressed in other embryonic tissues, and may play a general role in developmental processes such as cell migration, cell-cell recognition, and tissue growth regulation. Included in this group is the tumor suppressor protein DCC, which is deleted in colorectal carcinoma . DCC and neogenin each have four Ig-like domains followed by six fibronectin type III domains, a transmembrane domain, and an intracellular domain.
Probab=99.64 E-value=2.2e-15 Score=99.00 Aligned_cols=70 Identities=26% Similarity=0.514 Sum_probs=57.1
Q ss_pred EEEEEeeecCCCCCeEEEEeCCeeCCCCCCceeeecCCCeeeEEEcccCCCCCeEEEEEEEecccceeeEEEEEE
Q psy15667 211 TRVICGVTHGDPPLTIRWLKDGKPLSPRFPVNVSDLDSFSSLLSINSVSAAHSGEYTCVASNTAAQARYSSKLQV 285 (286)
Q Consensus 211 ~~l~c~~~~~~p~~~~~W~~~g~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~N~~g~~~~~~~L~V 285 (286)
+.|.|.+. |.|.|.++|+|+|..+.+..++.+.. .+.|.|.++..+|+|.|+|.|.|.+|...+++.|.|
T Consensus 2 v~l~C~~~-G~P~p~v~W~k~g~~~~~~~~~~~~~----~~~l~i~~v~~~D~G~Y~C~A~N~~G~~~~~~~L~V 71 (71)
T cd05723 2 VIFECEVT-GKPTPTVKWVKNGDMVIPSDYFKIVK----EHNLQVLGLVKSDEGFYQCIAENDVGNVQASAQLII 71 (71)
T ss_pred EEEEEEEE-EeCCCEEEEEECCeECCCCCCEEEEe----cCCEEEEcCCcccCEEEEEEEEcCCCEEEEEEEEEC
Confidence 56777764 67888999999998886655544432 235788999999999999999999999999999976
No 29
>cd04968 Ig3_Contactin_like Third Ig domain of contactin. Ig3_Contactin_like: Third Ig domain of contactins. Contactins are neural cell adhesion molecules and are comprised of six Ig domains followed by four fibronectin type III(FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module via contacts between Ig domains 1 and 4, and between Ig domains 2 and 3. Contactin-2 (TAG-1, axonin-1) may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. This group also includes contactin-1 and contactin-5. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-5 is expressed specifically in the rat postnatal nervous system, peaking at about 3 week
Probab=99.64 E-value=2.1e-15 Score=103.57 Aligned_cols=81 Identities=31% Similarity=0.564 Sum_probs=67.8
Q ss_pred CCeeEeccccccccCCCcEEEEEEeecCCCCeeEEeeCCEEcCCCCeeEeceEEecccceeEEEEEcccccCCCeEEEEE
Q psy15667 2 PPILTYSFIEQTLQPGPAVSLKCIASGNPTPDIGWTLDGFELPTNNRFVIGQFVSGHGDVISHVNISHVTVEDGGEYACV 81 (286)
Q Consensus 2 ~p~~~~~~~~~~~~~G~~~~l~C~~~g~p~p~v~W~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~I~~~~~~D~G~Y~C~ 81 (286)
||.|...+.+..+.+|+++.|.|.+.|+|.|++.|++++..+........ .+ ..|.|.+++.+|+|.|+|.
T Consensus 1 p~~~~~~p~~~~~~~g~~v~l~C~~~g~P~p~v~W~k~~~~~~~~~~~~~------~~---~~L~i~~v~~~D~G~Y~C~ 71 (88)
T cd04968 1 PSIIVVFPKDTYALKGQNVTLECFALGNPVPQIKWRKVDGSMPSSAEISM------SG---AVLKIPNIQFEDEGTYECE 71 (88)
T ss_pred CCcEEECCCceEEeCCCcEEEEEEeeEeCCCEEEEEECCCcCCCccEEEE------eC---CEEEECCCCcccCEEEEEE
Confidence 78888899999999999999999999999999999999877654433211 11 1489999999999999999
Q ss_pred EEcCCEEEEE
Q psy15667 82 AENRAGTCEI 91 (286)
Q Consensus 82 a~n~~g~~~~ 91 (286)
|.|..|....
T Consensus 72 a~N~~G~~~~ 81 (88)
T cd04968 72 AENIKGKDTH 81 (88)
T ss_pred EEECCCcEEE
Confidence 9999987643
No 30
>PHA02785 IL-beta-binding protein; Provisional
Probab=99.63 E-value=1e-14 Score=124.24 Aligned_cols=137 Identities=20% Similarity=0.306 Sum_probs=89.2
Q ss_pred CeeEEEeeCCccCcCC---CCcceEEEccCCCCCCeeEEEEEEcCCcceeeeeeEEEEcCCCc--eecCCceEEecCCCE
Q psy15667 98 PYLIAWFKDGRQIPGR---TSSTSLVINPVGREDRGIYQCIARRSDGDVAQGSAELQLGGLPY--VRLIPKVTAIDGEGL 172 (286)
Q Consensus 98 ~~~~~W~~~g~~l~~~---~~~~~l~i~~v~~~d~G~Y~C~a~~~~g~~~~~~~~l~v~~~~~--~~~~~~~~~~~g~~~ 172 (286)
.+.++|+|+|...... .....|.|.++..+|+|.|+|.+.|..|.. ..++.|.|..... +....
T Consensus 60 ~~~i~W~K~g~~~~~~~~~~~g~~l~i~~~~~~DsG~Y~C~a~N~~g~~-~~s~~L~V~~~~~~~~~~~~---------- 128 (326)
T PHA02785 60 ILDILWEKRGADNDRIIPIDNGSNMLILNPTQSDSGIYICITKNETYCD-MMSLNLTIVSVSESNIDLIS---------- 128 (326)
T ss_pred CceEEEEECCCccceEEEccCCceEEEcccCcccCeEEEEEEECCCcce-EEEEEEEEEecCCCccceee----------
Confidence 4689999998643211 123458899999999999999999987754 3456666643211 10000
Q ss_pred EEEeeEeeecCCeEEEEEcCCcccccccccCCCCCCCeEEEEEee----ecCCCCCeEEEEeCCeeCCCCCCceeeecCC
Q psy15667 173 SIKCPVAGYPIEEVHWEKVPPKIESFAFPFDGLPEGARTRVICGV----THGDPPLTIRWLKDGKPLSPRFPVNVSDLDS 248 (286)
Q Consensus 173 ~l~c~~~~~p~~~v~w~~~~~~~~~~~~~~~~~~~g~~~~l~c~~----~~~~p~~~~~W~~~g~~~~~~~~~~~~~~~~ 248 (286)
....+.+|..+.|.|.. ..+.|++.++|++++. +. ..++. ..
T Consensus 129 ----------------------------~~~~~~~g~~~~i~C~~~~~~~~~~~~~~i~W~k~~~-~~-~~r~~--~~-- 174 (326)
T PHA02785 129 ----------------------------YPQIVNERSTGEMVCPNINAFIASNVNADIIWSGHRR-LR-NKRLK--QR-- 174 (326)
T ss_pred ----------------------------ccceecccCcEEEECCChhhcccCCCCceEEEccCCc-cC-CcceE--ec--
Confidence 01124456666677741 1356888999988653 21 22221 11
Q ss_pred CeeeEEEcccCCCCCeEEEEEEEecccceee
Q psy15667 249 FSSLLSINSVSAAHSGEYTCVASNTAAQARY 279 (286)
Q Consensus 249 ~~~~L~i~~v~~~d~G~Y~C~a~N~~g~~~~ 279 (286)
.++.|.|.+++.+|.|.|+|.|.|..|....
T Consensus 175 ~~~~L~i~~v~~~d~G~Y~C~~~n~~g~~~~ 205 (326)
T PHA02785 175 TPGIITIEDVRKNDAGYYTCVLKYIYGDKTY 205 (326)
T ss_pred CCCeEEEeecChhhCeEEEEEEEeccCCEEE
Confidence 1458999999999999999999999887543
No 31
>cd05865 Ig1_NCAM-1 First immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-1. Ig1_NCAM-1: first immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-1. NCAM-1 plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM), and heterophilic (NCAM-nonNCAM), interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves the Ig1, Ig2, and Ig3 domains. By this model, Ig1 and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM molecules expressed on the surface of opposing cells (trans
Probab=99.63 E-value=4.5e-15 Score=103.11 Aligned_cols=81 Identities=26% Similarity=0.565 Sum_probs=61.9
Q ss_pred CCCCCCeEEEEEeeecCCC-CCeEEEEe-CCeeCCC-CCCceeeecCCCeeeEEEcccCCCCCeEEEEEEEecc-cceee
Q psy15667 204 GLPEGARTRVICGVTHGDP-PLTIRWLK-DGKPLSP-RFPVNVSDLDSFSSLLSINSVSAAHSGEYTCVASNTA-AQARY 279 (286)
Q Consensus 204 ~~~~g~~~~l~c~~~~~~p-~~~~~W~~-~g~~~~~-~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~N~~-g~~~~ 279 (286)
.+.+|+.+.|.|.+. |.| +|.+.|++ +|..+.. ..++.+........+|.|.+++.+|+|.|+|.|.|.+ |.+..
T Consensus 11 ~v~~G~~v~l~C~v~-G~P~~p~i~W~~~~g~~l~~~~~r~~v~~~~~~~~~L~I~~v~~~D~G~YtC~A~N~~~g~~~~ 89 (96)
T cd05865 11 EISVGESKFFLCQVA-GEAKDKDISWFSPNGEKLTPNQQRISVVRNDDYSSTLTIYNANIDDAGIYKCVVSNEDEGESEA 89 (96)
T ss_pred EECCCCeEEEEEEEe-CCCCCCEEEEECCCCcCccccCCeEEEEeCCCCceEEEEeccChhhCEEEEEEEEcCCCCcEEE
Confidence 466788888888775 565 57999997 7776654 3333333323335789999999999999999999997 99999
Q ss_pred EEEEEE
Q psy15667 280 SSKLQV 285 (286)
Q Consensus 280 ~~~L~V 285 (286)
++.|.|
T Consensus 90 s~~l~v 95 (96)
T cd05865 90 TVNVKI 95 (96)
T ss_pred EEEEEE
Confidence 999876
No 32
>cd05859 Ig4_PDGFR-alpha Fourth immunoglobulin (Ig)-like domain of platelet-derived growth factor receptor (PDGFR) alpha. IG4_PDGFR-alpha: The fourth immunoglobulin (Ig)-like domain of platelet-derived growth factor receptor (PDGFR) alpha. PDGF is a potent mitogen for connective tissue cells. PDGF-stimulated processes are mediated by three different PDGFs (PDGF-A,-B, and C). PDGFR alpha binds to all three PDGFs, whereas the PDGFR beta (not included in this group) binds only to PDGF-B. PDGF alpha is organized as an extracellular component having five Ig-like domains, a transmembrane segment, and a cytoplasmic portion having protein tyrosine kinase activity. In mice, PDGFR alpha and PDGFR beta are essential for normal development.
Probab=99.63 E-value=1.9e-15 Score=106.00 Aligned_cols=81 Identities=27% Similarity=0.396 Sum_probs=59.5
Q ss_pred CCCCCeEEEEEeeecCCCCCeEEEEeCCeeCCCCCCceeeec-----CCCeeeEEEcccCCCCCeEEEEEEEecccceee
Q psy15667 205 LPEGARTRVICGVTHGDPPLTIRWLKDGKPLSPRFPVNVSDL-----DSFSSLLSINSVSAAHSGEYTCVASNTAAQARY 279 (286)
Q Consensus 205 ~~~g~~~~l~c~~~~~~p~~~~~W~~~g~~~~~~~~~~~~~~-----~~~~~~L~i~~v~~~d~G~Y~C~a~N~~g~~~~ 279 (286)
+..|..+.|.|.+. |.|+|.+.|+|||.++.......+... ......|.|.++..+|+|.|+|.|.|..|+...
T Consensus 15 ~~~~~~~~l~~~v~-g~P~P~v~W~kdg~~l~~~~~~~~~~~~~~~~~~~~s~L~I~~v~~~D~G~Ytc~A~N~~g~~~~ 93 (101)
T cd05859 15 ANLHEVKEFVVEVE-AYPPPQIRWLKDNRTLIENLTEITTSEHNVQETRYVSKLKLIRAKEEDSGLYTALAQNEDAVKSY 93 (101)
T ss_pred EecCCcEEEEEEEE-EeCCCceEEEECCEECcCCcceEEeccccccceeeccEEEEeeCCHHHCEEEEEEEEcCCceEEE
Confidence 33455555555553 566778889999998875543322211 112468999999999999999999999999999
Q ss_pred EEEEEEC
Q psy15667 280 SSKLQVK 286 (286)
Q Consensus 280 ~~~L~V~ 286 (286)
++.|.|+
T Consensus 94 t~~l~V~ 100 (101)
T cd05859 94 TFALQIQ 100 (101)
T ss_pred EEEEEEE
Confidence 9999874
No 33
>cd05728 Ig4_Contactin-2-like Fourth Ig domain of the neural cell adhesion molecule contactin-2 and similar proteins. Ig4_Contactin-2-like: fourth Ig domain of the neural cell adhesion molecule contactin-2. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-2 (aliases TAG-1, axonin-1) facilitates cell adhesion by homophilic binding between molecules in apposed membranes. The first four Ig domains form the intermolecular binding fragment which arranges as a compact U-shaped module by contacts between Ig domains 1 and 4, and domains 2 and 3. It has been proposed that a linear zipper-like array forms, from contactin-2 molecules alternatively provided by the two apposed membranes.
Probab=99.63 E-value=2.8e-15 Score=102.17 Aligned_cols=78 Identities=31% Similarity=0.588 Sum_probs=67.0
Q ss_pred eEeccccccccCCCcEEEEEEeecCCCCeeEEeeCCEEcCCCCeeEeceEEecccceeEEEEEcccccCCCeEEEEEEEc
Q psy15667 5 LTYSFIEQTLQPGPAVSLKCIASGNPTPDIGWTLDGFELPTNNRFVIGQFVSGHGDVISHVNISHVTVEDGGEYACVAEN 84 (286)
Q Consensus 5 ~~~~~~~~~~~~G~~~~l~C~~~g~p~p~v~W~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~I~~~~~~D~G~Y~C~a~n 84 (286)
|...+.++.+.+|+.+.|.|.+.|.|.|.+.|+|++..+..+.++... ++ .|.|.++..+|+|.|+|.|.|
T Consensus 2 ~~~~p~~~~~~~G~~~~l~C~~~g~p~p~v~W~k~g~~~~~~~~~~~~------~~---~L~i~~~~~~D~G~Y~C~a~N 72 (85)
T cd05728 2 WLKVISDTEADIGSSLRWECKASGNPRPAYRWLKNGQPLASENRIEVE------AG---DLRITKLSLSDSGMYQCVAEN 72 (85)
T ss_pred ccccCCccEEcCCCcEEEEEEeeEeCCCEEEEEECCEECCCCCeEEEe------CC---EEEEeeCCHHHCEEEEEEEEC
Confidence 566788899999999999999999999999999999999776665431 11 488999999999999999999
Q ss_pred CCEEEEE
Q psy15667 85 RAGTCEI 91 (286)
Q Consensus 85 ~~g~~~~ 91 (286)
..|....
T Consensus 73 ~~G~~~~ 79 (85)
T cd05728 73 KHGTIYA 79 (85)
T ss_pred CCCeEEE
Confidence 9987654
No 34
>cd05857 Ig2_FGFR Second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor. Ig2_FGFR: second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor. FGF receptors bind FGF signaling polypeptides. FGFs participate in multiple processes such as morphogenesis, development, and angiogenesis. FGFs bind to four FGF receptor tyrosine kinases (FGFR1, -2, -3, -4). Receptor diversity is controlled by alternative splicing producing splice variants with different ligand binding characteristics and different expression patterns. FGFRs have an extracellular region comprised of three IG-like domains, a single transmembrane helix, and an intracellular tyrosine kinase domain. Ligand binding and specificity reside in the Ig-like domains 2 and 3, and the linker region that connects these two. FGFR activation and signaling depend on FGF-induced dimerization, a process involving cell surface heparin or heparin sulfate proteoglycans.
Probab=99.62 E-value=6.2e-15 Score=100.60 Aligned_cols=81 Identities=27% Similarity=0.516 Sum_probs=64.0
Q ss_pred CCCCCCeEEEEEeeecCCCCCeEEEEeCCeeCCCCCCceeeecCCCeeeEEEcccCCCCCeEEEEEEEecccceeeEEEE
Q psy15667 204 GLPEGARTRVICGVTHGDPPLTIRWLKDGKPLSPRFPVNVSDLDSFSSLLSINSVSAAHSGEYTCVASNTAAQARYSSKL 283 (286)
Q Consensus 204 ~~~~g~~~~l~c~~~~~~p~~~~~W~~~g~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~N~~g~~~~~~~L 283 (286)
.+.+|+.+.|.|.+. |.|.|.+.|+|+|..+....+............|.|.++..+|+|.|+|.|.|..|....++.|
T Consensus 5 ~v~~G~~~~L~C~~~-g~P~p~i~W~k~g~~l~~~~~~~~~~~~~~~~~l~i~~~~~~D~G~Y~C~a~N~~G~~~~~~~l 83 (85)
T cd05857 5 AVPAANTVKFRCPAA-GNPTPTMRWLKNGKEFKQEHRIGGYKVRNQHWSLIMESVVPSDKGNYTCVVENEYGSINHTYHL 83 (85)
T ss_pred EcCCCCEEEEEEEcC-CCCCCEEEEEECCEECCCCCceeeeEEeCCceEEEEccCCcccCEEEEEEEEeCCCEEEEEEEE
Confidence 367889999999874 6788999999999988655432111111124578999999999999999999999999999999
Q ss_pred EE
Q psy15667 284 QV 285 (286)
Q Consensus 284 ~V 285 (286)
.|
T Consensus 84 ~v 85 (85)
T cd05857 84 DV 85 (85)
T ss_pred EC
Confidence 86
No 35
>cd05867 Ig4_L1-CAM_like Fourth immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). Ig4_L1-CAM_like: fourth immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. This group also contains the chicken neuron-glia cell adhesion molecule, Ng-CAM.
Probab=99.62 E-value=4.9e-15 Score=98.76 Aligned_cols=74 Identities=26% Similarity=0.432 Sum_probs=58.2
Q ss_pred CCeEEEEEeeecCCCCCeEEEEeCCeeCCCCCCc-eeeecCCCeeeEEEcccCCCCCeEEEEEEEecccceeeEEEEEE
Q psy15667 208 GARTRVICGVTHGDPPLTIRWLKDGKPLSPRFPV-NVSDLDSFSSLLSINSVSAAHSGEYTCVASNTAAQARYSSKLQV 285 (286)
Q Consensus 208 g~~~~l~c~~~~~~p~~~~~W~~~g~~~~~~~~~-~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~N~~g~~~~~~~L~V 285 (286)
|+.+.|.|.+. |.|.|.++|+|+|..+...... .... ..+.|.|.+++.+|+|.|+|.|.|..|.....+.|.|
T Consensus 1 G~~v~l~C~~~-G~P~p~i~W~k~g~~i~~~~~~~~~~~---~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~~~~~l~V 75 (76)
T cd05867 1 GETARLDCQVE-GIPTPNITWSINGAPIEGTDPDPRRHV---SSGALILTDVQPSDTAVYQCEARNRHGNLLANAHVHV 75 (76)
T ss_pred CCeEEEEEEee-EeCCCeEEEEECCEECCCCCCCceEEe---eCCEEEECCCChhhCEEEEEEEECCCCeEEEEEEEEE
Confidence 56677777764 6778899999999887653221 1111 1457999999999999999999999999999999987
No 36
>cd05732 Ig5_NCAM-1_like Fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM) and similar proteins. Ig5_NCAM-1 like: domain similar to the fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM). NCAM plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM), and heterophilic (NCAM-non-NCAM), interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves Ig1, Ig2, and Ig3. By this model, Ig1 and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM mole
Probab=99.62 E-value=4.1e-15 Score=103.95 Aligned_cols=84 Identities=29% Similarity=0.515 Sum_probs=66.2
Q ss_pred CCeeEeccccccccCCCcEEEEEEeecCCCCeeEEeeCCEEcCCC-----CeeEeceEEecccceeEEEEEcccccCCCe
Q psy15667 2 PPILTYSFIEQTLQPGPAVSLKCIASGNPTPDIGWTLDGFELPTN-----NRFVIGQFVSGHGDVISHVNISHVTVEDGG 76 (286)
Q Consensus 2 ~p~~~~~~~~~~~~~G~~~~l~C~~~g~p~p~v~W~~~~~~l~~~-----~~~~~~~~~~~~~~~~~~l~I~~~~~~D~G 76 (286)
+|.|. .+.+..+.+|+++.|.|.+.|.|.|.+.|++++..+... .++.+. .......|.|.+++.+|+|
T Consensus 2 ~P~i~-~~~~~~~~~g~~v~l~C~~~g~p~p~v~W~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~L~I~~v~~~D~G 75 (96)
T cd05732 2 QPKIT-YLENQTAVELEQITLTCEAEGDPIPEITWRRATRNFSEGDKSLDGRIVVR-----GHARVSSLTLKDVQLTDAG 75 (96)
T ss_pred Cccce-ecCceeEecCCcEEEEEEEeEcCCCcEEEEECCcccCCCCccccceEEEe-----CCccEEEEEECcCCcCcCE
Confidence 67886 567889999999999999999999999999998766532 233221 1122346999999999999
Q ss_pred EEEEEEEcCCEEEEE
Q psy15667 77 EYACVAENRAGTCEI 91 (286)
Q Consensus 77 ~Y~C~a~n~~g~~~~ 91 (286)
.|+|.|.|..|..+.
T Consensus 76 ~Y~C~a~N~~G~~~~ 90 (96)
T cd05732 76 RYDCEASNRIGGDQQ 90 (96)
T ss_pred EeEEEEEeCCCCcEE
Confidence 999999999987643
No 37
>cd04969 Ig5_Contactin_like Fifth Ig domain of contactin. Ig5_Contactin_like: Fifth Ig domain of contactins. Contactins are neural cell adhesion molecules and are comprised of six Ig domains followed by four fibronectin type III(FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module via contacts between Ig domains 1 and 4, and between Ig domains 2 and 3. Contactin-2 (TAG-1, axonin-1) may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. This group also includes contactin-1 and contactin-5. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-5 is expressed specifically in the rat postnatal nervous system, peaking at about 3 week
Probab=99.62 E-value=3.4e-15 Score=98.71 Aligned_cols=73 Identities=27% Similarity=0.431 Sum_probs=60.8
Q ss_pred CCeEEEEEeeecCCCCCeEEEEeCCeeCCCCCCceeeecCCCeeeEEEcccCCCCCeEEEEEEEecccceeeEEEEEE
Q psy15667 208 GARTRVICGVTHGDPPLTIRWLKDGKPLSPRFPVNVSDLDSFSSLLSINSVSAAHSGEYTCVASNTAAQARYSSKLQV 285 (286)
Q Consensus 208 g~~~~l~c~~~~~~p~~~~~W~~~g~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~N~~g~~~~~~~L~V 285 (286)
|+.+.|.|.+. |.|.|.+.|+|++..+....++.+.. .+.|.|.+++.+|+|.|+|.|.|.+|....++.|.|
T Consensus 1 G~~v~L~C~~~-g~P~p~v~W~k~~~~~~~~~~~~~~~----~~~L~i~~v~~~D~G~Y~C~a~N~~G~~~~~~~l~V 73 (73)
T cd04969 1 GGDVIIECKPK-AAPKPTISWSKGTELLTNSSRICIWP----DGSLEILNVTKSDEGKYTCFAENFFGKANSTGSLSV 73 (73)
T ss_pred CCeEEEEEeee-EcCCCEEEEEECCEEcccCCCEEECC----CCeEEEccCChhHCEEEEEEEECCCCceEEEEEEEC
Confidence 56778888764 67888999999999887665554432 357999999999999999999999999999999986
No 38
>cd05735 Ig8_DSCAM Eight immunoglobulin (Ig) domain of Down Syndrome Cell Adhesion molecule (DSCAM). Ig8_DSCAM: the eight immunoglobulin (Ig) domain of Down Syndrome Cell Adhesion molecule (DSCAM). DSCAM is a cell adhesion molecule expressed largely in the developing nervous system. The gene encoding DSCAM is located at human chromosome 21q22, the locus associated with the mental retardation phenotype of Down Syndrome. DSCAM is predicted to be the largest member of the IG superfamily. It has been demonstrated that DSCAM can mediate cation-independent homophilic intercellular adhesion.
Probab=99.62 E-value=7.7e-15 Score=100.52 Aligned_cols=78 Identities=28% Similarity=0.486 Sum_probs=62.6
Q ss_pred CCeEEEEEeeecCCCCCeEEEEeCCeeCCCC-CCceeeec---CCCeeeEEEcccCCCCCeEEEEEEEecccceeeEEEE
Q psy15667 208 GARTRVICGVTHGDPPLTIRWLKDGKPLSPR-FPVNVSDL---DSFSSLLSINSVSAAHSGEYTCVASNTAAQARYSSKL 283 (286)
Q Consensus 208 g~~~~l~c~~~~~~p~~~~~W~~~g~~~~~~-~~~~~~~~---~~~~~~L~i~~v~~~d~G~Y~C~a~N~~g~~~~~~~L 283 (286)
|+.+.|.|.+. |.|++.+.|+|++..+... .++.+... ......|.|.++..+|+|.|+|.|.|..|....++.|
T Consensus 1 g~~~~l~C~~~-g~p~~~i~W~k~~~~i~~~~~r~~~~~~~~~~~~~s~L~I~~~~~~D~G~YtC~A~N~~G~~~~~~~L 79 (88)
T cd05735 1 GQKKEMSCTAH-GEKPIIVRWEKEDRIINPEMSRYLVSTKEVGDEVISTLQILPTVREDSGFFSCHAINSYGEDRGIIQL 79 (88)
T ss_pred CCeEEEEEEEE-CCCCCEEEEeeCCEECCCCCCcEEEEEecCCCcEEEEEEECCCCcccCEEEEEEEEcCCCcceEEEEE
Confidence 67788888875 6788999999999888543 34444321 1234679999999999999999999999999999999
Q ss_pred EEC
Q psy15667 284 QVK 286 (286)
Q Consensus 284 ~V~ 286 (286)
.|+
T Consensus 80 ~V~ 82 (88)
T cd05735 80 TVQ 82 (88)
T ss_pred EEe
Confidence 984
No 39
>cd05863 Ig2_VEGFR-3 Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 3 (VEGFR-3). Ig2_VEGFR-3: Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 3 (VEGFR-3). The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. VEGFRs bind VEGFs with high affinity at the Ig-like domains. VEGFR-3 (Flt-4) binds two members of the VEGF family (VEGF-C and -D) and is involved in tumor angiogenesis and growth.
Probab=99.62 E-value=3.1e-15 Score=96.30 Aligned_cols=64 Identities=33% Similarity=0.481 Sum_probs=51.5
Q ss_pred EEEEeeecCCCCCeEEEEeCCeeCCCCCCceeeecCCCeeeEEEcccCCCCCeEEEEEEEecccceeeEEEEEE
Q psy15667 212 RVICGVTHGDPPLTIRWLKDGKPLSPRFPVNVSDLDSFSSLLSINSVSAAHSGEYTCVASNTAAQARYSSKLQV 285 (286)
Q Consensus 212 ~l~c~~~~~~p~~~~~W~~~g~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~N~~g~~~~~~~L~V 285 (286)
.|.|.+. |.|.|.+.|+|||+.+... .....|.|.++..+|+|.|+|.|.|..|....+..|.|
T Consensus 2 ~l~c~v~-g~P~P~v~W~kdg~~l~~~---------~~~~~L~i~~v~~~D~G~YtC~a~N~~g~~~~~~~~~l 65 (67)
T cd05863 2 KLPVKVA-AYPPPEFQWYKDGKLISGK---------HSQHSLQIKDVTEASAGTYTLVLWNSAAGLEKRISLEL 65 (67)
T ss_pred EEEEEEE-EeCCCEEEEEECCEECccc---------CCcCEEEECCCCHHHCEEEEEEEEECCccEEEEEEEEE
Confidence 5677764 7788899999999988532 12458999999999999999999999997777766654
No 40
>cd05745 Ig3_Peroxidasin Third immunoglobulin (Ig)-like domain of peroxidasin. Ig3_Peroxidasin: the third immunoglobulin (Ig)-like domain in peroxidasin. Peroxidasin has a peroxidase domain and interacting extracellular motifs containing four Ig-like domains. It has been suggested that peroxidasin is secreted and has functions related to the stabilization of the extracellular matrix. It may play a part in various other important processes such as removal and destruction of cells which have undergone programmed cell death, and protection of the organism against non-self.
Probab=99.62 E-value=2.9e-15 Score=99.33 Aligned_cols=69 Identities=33% Similarity=0.622 Sum_probs=57.8
Q ss_pred CCCcEEEEEEeecCCCCeeEEeeCCEEcCCCCeeEeceEEecccceeEEEEEcccccCCCeEEEEEEEcCCEEEEEe
Q psy15667 16 PGPAVSLKCIASGNPTPDIGWTLDGFELPTNNRFVIGQFVSGHGDVISHVNISHVTVEDGGEYACVAENRAGTCEIT 92 (286)
Q Consensus 16 ~G~~~~l~C~~~g~p~p~v~W~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~I~~~~~~D~G~Y~C~a~n~~g~~~~~ 92 (286)
+|+++.|.|.+.|+|.|.+.|+|++..+..+.++.+. .. ..|.|.+++.+|+|.|+|.|.|..|..+.+
T Consensus 1 eG~~v~l~C~~~g~P~p~i~W~k~g~~~~~~~~~~~~----~~----~~L~I~~v~~~D~G~Y~C~A~N~~G~~~~~ 69 (74)
T cd05745 1 EGQTVDFLCEAQGYPQPVIAWTKGGSQLSVDRRHLVL----SS----GTLRISRVALHDQGQYECQAVNIVGSQRTV 69 (74)
T ss_pred CCCeEEEEeECCEecCCEEEEEECCEECCCCCCeEEc----cC----CeEEEeeCCHHhCEEEEEEEEeCCCceeEE
Confidence 6999999999999999999999999998766554321 11 148999999999999999999999876543
No 41
>cd05865 Ig1_NCAM-1 First immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-1. Ig1_NCAM-1: first immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-1. NCAM-1 plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM), and heterophilic (NCAM-nonNCAM), interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves the Ig1, Ig2, and Ig3 domains. By this model, Ig1 and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM molecules expressed on the surface of opposing cells (trans
Probab=99.61 E-value=6e-15 Score=102.49 Aligned_cols=82 Identities=24% Similarity=0.464 Sum_probs=63.4
Q ss_pred eEeccccccccCCCcEEEEEEeecCCC-CeeEEee-CCEEcCC-CCeeEeceEEecccceeEEEEEcccccCCCeEEEEE
Q psy15667 5 LTYSFIEQTLQPGPAVSLKCIASGNPT-PDIGWTL-DGFELPT-NNRFVIGQFVSGHGDVISHVNISHVTVEDGGEYACV 81 (286)
Q Consensus 5 ~~~~~~~~~~~~G~~~~l~C~~~g~p~-p~v~W~~-~~~~l~~-~~~~~~~~~~~~~~~~~~~l~I~~~~~~D~G~Y~C~ 81 (286)
+...+.+..+..|++++|.|.+.|.|. |.++|++ |+..+.. +.++.+. ...+....|.|.+++.+|+|.|+|.
T Consensus 3 ~~~~p~~~~v~~G~~v~l~C~v~G~P~~p~i~W~~~~g~~l~~~~~r~~v~----~~~~~~~~L~I~~v~~~D~G~YtC~ 78 (96)
T cd05865 3 VDIVPSQGEISVGESKFFLCQVAGEAKDKDISWFSPNGEKLTPNQQRISVV----RNDDYSSTLTIYNANIDDAGIYKCV 78 (96)
T ss_pred EEEeCCccEECCCCeEEEEEEEeCCCCCCEEEEECCCCcCccccCCeEEEE----eCCCCceEEEEeccChhhCEEEEEE
Confidence 356677889999999999999999995 7999998 7777655 4454321 1122234699999999999999999
Q ss_pred EEcCC-EEEE
Q psy15667 82 AENRA-GTCE 90 (286)
Q Consensus 82 a~n~~-g~~~ 90 (286)
|.|.. |..+
T Consensus 79 A~N~~~g~~~ 88 (96)
T cd05865 79 VSNEDEGESE 88 (96)
T ss_pred EEcCCCCcEE
Confidence 99986 6554
No 42
>cd05892 Ig_Myotilin_C C-terminal immunoglobulin (Ig)-like domain of myotilin. Ig_Myotilin_C: C-terminal immunoglobulin (Ig)-like domain of myotilin. Mytolin belongs to the palladin-myotilin-myopalladin family. Proteins belonging to the latter family contain multiple Ig-like domains and function as scaffolds, modulating actin cytoskeleton. Myotilin is most abundant in skeletal and cardiac muscle, and is involved in maintaining sarcomere integrity. It binds to alpha-actinin, filamin and actin. Mutations in myotilin lead to muscle disorders.
Probab=99.61 E-value=5.4e-15 Score=97.76 Aligned_cols=69 Identities=28% Similarity=0.382 Sum_probs=54.8
Q ss_pred EEEEEEeecCCCCeeEEeeCCEEcCC-CCeeEeceEEecccceeEEEEEcccccCCCeEEEEEEEcCCEEEEEe
Q psy15667 20 VSLKCIASGNPTPDIGWTLDGFELPT-NNRFVIGQFVSGHGDVISHVNISHVTVEDGGEYACVAENRAGTCEIT 92 (286)
Q Consensus 20 ~~l~C~~~g~p~p~v~W~~~~~~l~~-~~~~~~~~~~~~~~~~~~~l~I~~~~~~D~G~Y~C~a~n~~g~~~~~ 92 (286)
+.|.|.+.|.|.|.|.|+||+..|.. ..++.+.. .++...+|.|.++..+|+|.|+|.|.|..|....+
T Consensus 1 v~l~C~v~G~P~P~i~W~k~~~~i~~~~~r~~~~~----~~~g~~~L~I~~~~~~D~G~Y~C~A~N~~G~~~~~ 70 (75)
T cd05892 1 VKLECQISAIPPPKIFWKRNNEMVQYNTDRISLYQ----DNSGRVTLLIKNVNKKDAGWYTVSAVNEAGVATCH 70 (75)
T ss_pred CEEEEEEEecCCCeEEEEECCEECcCCCCeEEEEE----cCCCcEEEEECCCChhhCEEEEEEEEcCcCeEEEE
Confidence 57999999999999999999999874 35554321 11122359999999999999999999999987654
No 43
>cd05894 Ig_C5_MyBP-C C5 immunoglobulin (Ig) domain of cardiac myosin binding protein C (MyBP-C). Ig_C5_MyBP_C : the C5 immunoglobulin (Ig) domain of cardiac myosin binding protein C (MyBP-C). MyBP_C consists of repeated domains, Ig and fibronectin type 3, and various linkers. Three isoforms of MYBP_C exist and are included in this group: cardiac(c), and fast and slow skeletal muscle (s) MyBP_C. cMYBP_C has insertions between and inside domains and an additional cardiac-specific Ig domain at the N-terminus. For cMYBP_C an interaction has been demonstrated between this C5 domain and the Ig C8 domain.
Probab=99.61 E-value=7.9e-15 Score=99.96 Aligned_cols=76 Identities=22% Similarity=0.367 Sum_probs=62.2
Q ss_pred cccccCCCcEEEEEEeecCCCCeeEEeeCCEEcCC-CCeeEeceEEecccceeEEEEEcccccCCCeEEEEEEEcCCEEE
Q psy15667 11 EQTLQPGPAVSLKCIASGNPTPDIGWTLDGFELPT-NNRFVIGQFVSGHGDVISHVNISHVTVEDGGEYACVAENRAGTC 89 (286)
Q Consensus 11 ~~~~~~G~~~~l~C~~~g~p~p~v~W~~~~~~l~~-~~~~~~~~~~~~~~~~~~~l~I~~~~~~D~G~Y~C~a~n~~g~~ 89 (286)
...+.+|+++.|.|.+.|.|.|.+.|+|++.++.. +.++.+.. ..+ ...|.|.++..+|+|.|+|.|.|..|..
T Consensus 4 ~~~v~~G~~v~l~c~~~G~P~P~v~W~k~~~~i~~~~~r~~~~~----~~~-~~~L~I~~~~~~D~G~Y~c~a~N~~G~~ 78 (86)
T cd05894 4 TIVVVAGNKLRLDVPISGEPAPTVTWSRGDKAFTETEGRVRVES----YKD-LSSFVIEGAEREDEGVYTITVTNPVGED 78 (86)
T ss_pred EEEEEcCCEEEEEeeEeecCCCeEEEEECCEECccCCCeEEEEE----cCC-eEEEEECCCccCcCEEEEEEEEeCCCcE
Confidence 45789999999999999999999999999999864 34554321 111 3469999999999999999999999976
Q ss_pred EE
Q psy15667 90 EI 91 (286)
Q Consensus 90 ~~ 91 (286)
..
T Consensus 79 ~~ 80 (86)
T cd05894 79 HA 80 (86)
T ss_pred EE
Confidence 53
No 44
>cd05748 Ig_Titin_like Immunoglobulin (Ig)-like domain of titin and similar proteins. Ig_Titin_like: immunoglobulin (Ig)-like domain found in titin-like proteins. Titin (also called connectin) is a fibrous sarcomeric protein specifically found in vertebrate striated muscle. Titin is gigantic, depending on isoform composition it ranges from 2970 to 3700 kDa, and is of a length that spans half a sarcomere. Titin largely consists of multiple repeats of Ig-like and fibronectin type 3 (FN-III)-like domains. Titin connects the ends of myosin thick filaments to Z disks and extends along the thick filament to the H zone. It appears to function similarly to an elastic band, keeping the myosin filaments centered in the sarcomere during muscle contraction or stretching. Within the sarcomere, titin is also attached to or is associated with myosin binding protein C (MyBP-C). MyBP-C appears to contribute to the generation of passive tension by titin, and similar to titin has repeated Ig-like and FN-
Probab=99.61 E-value=8.8e-15 Score=97.03 Aligned_cols=73 Identities=30% Similarity=0.473 Sum_probs=59.7
Q ss_pred EEEEEeeecCCCCCeEEEEeCCeeCCCCCCceeeecCCCeeeEEEcccCCCCCeEEEEEEEecccceeeEEEEEE
Q psy15667 211 TRVICGVTHGDPPLTIRWLKDGKPLSPRFPVNVSDLDSFSSLLSINSVSAAHSGEYTCVASNTAAQARYSSKLQV 285 (286)
Q Consensus 211 ~~l~c~~~~~~p~~~~~W~~~g~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~N~~g~~~~~~~L~V 285 (286)
+.|.|.+. |.|.|.+.|+|+|..+....++.+... .....|.|.++..+|+|.|+|.|.|..|..+.++.|.|
T Consensus 2 ~~l~c~~~-G~P~p~v~W~k~g~~l~~~~~~~~~~~-~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~~~~~l~V 74 (74)
T cd05748 2 VRLEVPIS-GRPTPTVTWSKDGKPLKLSGRVQIETT-ASSTSLVIKNAERSDSGKYTLTLKNPAGEKSATINVKV 74 (74)
T ss_pred EEEEeeEe-eeCCCeEEEEECCEEcCCCCeEEEEEC-CCeEEEEECCCCcCcCEEEEEEEECCCccEEEEEEEEC
Confidence 46777764 778889999999998866555554432 23578999999999999999999999999999999876
No 45
>cd05870 Ig5_NCAM-2 Fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-2 (also known as OCAM/mamFas II and RNCAM). Ig5_NCAM-2: the fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-2 (also known as OCAM/mamFas II and RNCAM). NCAM-2 is organized similarly to NCAM , including five N-terminal Ig-like domains and two fibronectin type III domains. NCAM-2 is differentially expressed in the developing and mature olfactory epithelium (OE), and may function like NCAM, as an adhesion molecule.
Probab=99.61 E-value=6.1e-15 Score=103.38 Aligned_cols=83 Identities=29% Similarity=0.573 Sum_probs=64.0
Q ss_pred CCeeEeccccccccCCCcEEEEEEeecCCCCeeEEeeC--CEEcCC-----CCeeEeceEEecccceeEEEEEcccccCC
Q psy15667 2 PPILTYSFIEQTLQPGPAVSLKCIASGNPTPDIGWTLD--GFELPT-----NNRFVIGQFVSGHGDVISHVNISHVTVED 74 (286)
Q Consensus 2 ~p~~~~~~~~~~~~~G~~~~l~C~~~g~p~p~v~W~~~--~~~l~~-----~~~~~~~~~~~~~~~~~~~l~I~~~~~~D 74 (286)
+|.|. .+.++++.+|++++|.|.+.|.|.|.+.|+++ +..+.. +.|+.+. ... ....|.|.+++.+|
T Consensus 2 ~p~i~-~~~~~~~~~G~~v~l~C~~~G~P~p~i~W~k~~~g~~~~~~~~~~~~r~~v~----~~~-~~~~L~I~~v~~~D 75 (98)
T cd05870 2 QPHII-QLKNETTVENGAATLSCKAEGEPIPEITWKRASDGHTFSEGDKSPDGRIEVK----GQH-GESSLHIKDVKLSD 75 (98)
T ss_pred CCEEE-eeccEEEcCCCcEEEEEecccCCCCeEEEEECCCCceeccCCcCcCceEEEe----ecC-CeeEEEEeeCCcCC
Confidence 67776 47889999999999999999999999999994 444431 2344331 111 12358999999999
Q ss_pred CeEEEEEEEcCCEEEE
Q psy15667 75 GGEYACVAENRAGTCE 90 (286)
Q Consensus 75 ~G~Y~C~a~n~~g~~~ 90 (286)
+|.|+|.|.|..|...
T Consensus 76 ~G~Y~C~A~N~~G~~~ 91 (98)
T cd05870 76 SGRYDCEAASRIGGHQ 91 (98)
T ss_pred CEEEEEEEeccCCcce
Confidence 9999999999988654
No 46
>cd05868 Ig4_NrCAM Fourth immunoglobulin (Ig)-like domain of NrCAM (NgCAM-related cell adhesion molecule). Ig4_ NrCAM: fourth immunoglobulin (Ig)-like domain of NrCAM (NgCAM-related cell adhesion molecule). NrCAM belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six IG-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. NrCAM is primarily expressed in the nervous system.
Probab=99.60 E-value=7.6e-15 Score=97.72 Aligned_cols=75 Identities=24% Similarity=0.400 Sum_probs=56.1
Q ss_pred CCeEEEEEeeecCCCCCeEEEEeCCeeCCCCCCceeeecCCCeeeEEEcccCCCCCeEEEEEEEecccceeeEEEEEE
Q psy15667 208 GARTRVICGVTHGDPPLTIRWLKDGKPLSPRFPVNVSDLDSFSSLLSINSVSAAHSGEYTCVASNTAAQARYSSKLQV 285 (286)
Q Consensus 208 g~~~~l~c~~~~~~p~~~~~W~~~g~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~N~~g~~~~~~~L~V 285 (286)
|+.+.|.|.+. |.|.|.+.|+|+|+.+........... ....|.|.+++.+|+|.|+|.|.|.+|....++.|.|
T Consensus 1 g~~~~l~C~a~-G~P~P~i~W~k~g~~i~~~~~~~~~~~--~~~~l~i~~v~~~D~G~Y~C~A~N~~G~~~~~~~l~v 75 (76)
T cd05868 1 GEDGTLICRAN-GNPKPSISWLTNGVPIEIAPTDPSRKV--DGDTIIFSKVQERSSAVYQCNASNEYGYLLANAFVNV 75 (76)
T ss_pred CCCEEEEEEee-EeCCCeEEEEECCEEccccCCCceEEe--cCCEEEECCCCHhhCEEEEEEEEcCCCEEEEEEEEEe
Confidence 45566667663 677788899999988753221111111 1347899999999999999999999999999999987
No 47
>cd05852 Ig5_Contactin-1 Fifth Ig domain of contactin-1. Ig5_Contactin-1: fifth Ig domain of the neural cell adhesion molecule contactin-1. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-1 is differentially expressed in tumor tissues and may through a RhoA mechanism, facilitate invasion and metastasis of human lung adenocarcinoma.
Probab=99.60 E-value=4.9e-15 Score=97.58 Aligned_cols=67 Identities=31% Similarity=0.575 Sum_probs=57.2
Q ss_pred CCcEEEEEEeecCCCCeeEEeeCCEEcCCCCeeEeceEEecccceeEEEEEcccccCCCeEEEEEEEcCCEEEEE
Q psy15667 17 GPAVSLKCIASGNPTPDIGWTLDGFELPTNNRFVIGQFVSGHGDVISHVNISHVTVEDGGEYACVAENRAGTCEI 91 (286)
Q Consensus 17 G~~~~l~C~~~g~p~p~v~W~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~I~~~~~~D~G~Y~C~a~n~~g~~~~ 91 (286)
|+.+.|.|.+.|.|.|.|.|+|++..+..+.++.+. .++ .|.|.+++.+|+|.|+|.|.|..|....
T Consensus 1 G~~~~l~C~~~g~P~p~v~W~k~~~~l~~~~r~~~~----~~g----~L~I~~v~~~D~G~Y~C~A~N~~G~~~~ 67 (73)
T cd05852 1 GGRVIIECKPKAAPKPKFSWSKGTELLVNNSRISIW----DDG----SLEILNITKLDEGSYTCFAENNRGKANS 67 (73)
T ss_pred CCeEEEEEecceeCCCEEEEEeCCEecccCCCEEEc----CCC----EEEECcCChhHCEEEEEEEECCCCceeE
Confidence 789999999999999999999999988777776542 122 4899999999999999999999987654
No 48
>cd07693 Ig1_Robo First immunoglobulin (Ig)-like domain in Robo (roundabout) receptors and similar proteins. Ig1_Robo: domain similar to the first immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit res
Probab=99.60 E-value=8e-15 Score=103.18 Aligned_cols=86 Identities=31% Similarity=0.521 Sum_probs=64.4
Q ss_pred CCeeEeccccccccCCCcEEEEEEeecCCCCeeEEeeCCEEcCCC---CeeEeceEEeccccee-EEEEEcccccCCCeE
Q psy15667 2 PPILTYSFIEQTLQPGPAVSLKCIASGNPTPDIGWTLDGFELPTN---NRFVIGQFVSGHGDVI-SHVNISHVTVEDGGE 77 (286)
Q Consensus 2 ~p~~~~~~~~~~~~~G~~~~l~C~~~g~p~p~v~W~~~~~~l~~~---~~~~~~~~~~~~~~~~-~~l~I~~~~~~D~G~ 77 (286)
||.|...+.+..+.+|+++.|.|.+.|+|.|.+.|+|||..+... .... ......+... ..+.+..+..+|+|.
T Consensus 1 ~P~i~~~p~~~~v~~G~~~~l~C~~~g~P~p~i~W~k~g~~l~~~~~~~~~~--~~~~~~~~~~~~~i~~~~~~~~D~G~ 78 (100)
T cd07693 1 PPRIVEHPSDLIVSKGDPATLNCKAEGRPTPTIQWLKNGQPLETDKDDPRSH--RIVLPSGSLFFLRVVHGRKGRSDEGV 78 (100)
T ss_pred CCeEEecCceeEEcCCCeEEEEeeCCcCCCCEEEEEECCEECccccCCCCcc--eEEecCCcEEEEEeeccCCCcCcCEE
Confidence 799999999999999999999999999999999999999988651 1110 0011122221 112233457999999
Q ss_pred EEEEEEcCCEEE
Q psy15667 78 YACVAENRAGTC 89 (286)
Q Consensus 78 Y~C~a~n~~g~~ 89 (286)
|+|.|.|..|..
T Consensus 79 Y~C~a~N~~G~~ 90 (100)
T cd07693 79 YVCVAHNSLGEA 90 (100)
T ss_pred EEEEEEccccce
Confidence 999999999874
No 49
>cd05853 Ig6_Contactin-4 Sixth Ig domain of contactin-4. Ig6_Contactin-4: sixth Ig domain of the neural cell adhesion molecule contactin-4. Contactins are neural cell adhesion molecules, and are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The different contactins show different expression patterns in the central nervous system. Highest expresson of contactin-4 is in testes, thyroid, small intestine, uterus and brain. Contactin-4 plays a role in the response of neuroblastoma cells to differentiating agents, such as retinoids. The contactin 4 gene is associated with cerebellar degeneration in spinocerebellar ataxia type 16.
Probab=99.60 E-value=8.2e-15 Score=98.80 Aligned_cols=77 Identities=18% Similarity=0.320 Sum_probs=59.6
Q ss_pred eEEEEEeeec-CCCCCeEEEEeCCeeCCC--CC-CceeeecCCCeeeEEEcccCCCCCeEEEEEEEecccceeeEEEEEE
Q psy15667 210 RTRVICGVTH-GDPPLTIRWLKDGKPLSP--RF-PVNVSDLDSFSSLLSINSVSAAHSGEYTCVASNTAAQARYSSKLQV 285 (286)
Q Consensus 210 ~~~l~c~~~~-~~p~~~~~W~~~g~~~~~--~~-~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~N~~g~~~~~~~L~V 285 (286)
.+.|.|.+.+ +.+++.+.|+|||+.+.. .. ++.+.......+.|.|.+++.+|+|+|+|.|.|.++....++.|.|
T Consensus 2 ~~~l~C~v~~d~~l~~~~~W~~dg~~i~~~~~~~~~~~~~~~~~~~~L~I~nv~~~dsG~YtC~a~n~~~~~~a~a~L~V 81 (85)
T cd05853 2 SIVLPCQVSHDHSLDIVFTWSFNGHLIDFQKDGDHFERVGGQDSAGDLMIRSIQLKHAGKYVCMVQTSVDKLSAAADLIV 81 (85)
T ss_pred cEEEEEEeccCCCCCcEEEEEECCEECcccCCCccEEEeccCCCCCcEEEecCCHHHCEEEEEEEEcccCceEEEEEEEE
Confidence 4667777765 566788999999999952 22 2222211123468999999999999999999999999999999998
Q ss_pred C
Q psy15667 286 K 286 (286)
Q Consensus 286 ~ 286 (286)
+
T Consensus 82 ~ 82 (85)
T cd05853 82 R 82 (85)
T ss_pred e
Confidence 5
No 50
>cd05746 Ig4_Peroxidasin Fourth immunoglobulin (Ig)-like domain of peroxidasin. Ig4_Peroxidasin: the fourth immunoglobulin (Ig)-like domain in peroxidasin. Peroxidasin has a peroxidase domain and interacting extracellular motifs containing four Ig-like domains. It has been suggested that peroxidasin is secreted, and has functions related to the stabilization of the extracellular matrix. It may play a part in various other important processes such as removal and destruction of cells, which have undergone programmed cell death, and protection of the organism against non-self.
Probab=99.59 E-value=5.1e-15 Score=96.68 Aligned_cols=68 Identities=37% Similarity=0.593 Sum_probs=55.8
Q ss_pred EEEEeeecCCCCCeEEEEeCCeeCCCCCCceeeecCCCeeeEEEcccCCCCCeEEEEEEEecccceeeEEEEE
Q psy15667 212 RVICGVTHGDPPLTIRWLKDGKPLSPRFPVNVSDLDSFSSLLSINSVSAAHSGEYTCVASNTAAQARYSSKLQ 284 (286)
Q Consensus 212 ~l~c~~~~~~p~~~~~W~~~g~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~N~~g~~~~~~~L~ 284 (286)
.|.|.+. |.|.|.+.|+|+|..+....++.+.. .+.|.|.++..+|+|.|+|.|.|.+|..+.++.|+
T Consensus 2 ~L~C~~~-g~P~p~i~W~k~g~~~~~~~~~~~~~----~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~~~~~Lt 69 (69)
T cd05746 2 QIPCSAQ-GDPEPTITWNKDGVQVTESGKFHISP----EGYLAIRDVGVADQGRYECVARNTIGYASVSMVLS 69 (69)
T ss_pred EeEecce-EeCCCEEEEEECCEECCCCCCEEECC----CCEEEECcCChhhCEEEEEEEECCCCcEEEEEEeC
Confidence 5777764 77888999999999887655544332 45899999999999999999999999999988874
No 51
>cd05893 Ig_Palladin_C C-terminal immunoglobulin (Ig)-like domain of palladin. Ig_Palladin_C: C-terminal immunoglobulin (Ig)-like domain of palladin. Palladin belongs to the palladin-myotilin-myopalladin family. Proteins belonging to this family contain multiple Ig-like domains and function as scaffolds, modulating actin cytoskeleton. Palladin binds to alpha-actinin ezrin, vasodilator-stimulated phosphoprotein VASP, SPIN90 (DIP, mDia interacting protein), and Src. Palladin also binds F-actin directly, via its Ig3 domain. Palladin is expressed as several alternatively spliced isoforms, having various combinations of Ig-like domains, in a cell-type-specific manner. It has been suggested that palladin's different Ig-like domains may be specialized for distinct functions.
Probab=99.59 E-value=1.1e-14 Score=96.47 Aligned_cols=69 Identities=35% Similarity=0.470 Sum_probs=54.9
Q ss_pred EEEEEEeecCCCCeeEEeeCCEEcCCC-CeeEeceEEecccceeEEEEEcccccCCCeEEEEEEEcCCEEEEEe
Q psy15667 20 VSLKCIASGNPTPDIGWTLDGFELPTN-NRFVIGQFVSGHGDVISHVNISHVTVEDGGEYACVAENRAGTCEIT 92 (286)
Q Consensus 20 ~~l~C~~~g~p~p~v~W~~~~~~l~~~-~~~~~~~~~~~~~~~~~~l~I~~~~~~D~G~Y~C~a~n~~g~~~~~ 92 (286)
|.|+|.+.|.|.|.|.|+||+..+..+ .++.+.. .+.....|.|.++..+|+|.|+|.|.|..|....+
T Consensus 1 v~l~C~v~G~P~P~v~W~k~~~~l~~~~~~~~~~~----~~~~~~~L~I~~v~~~D~G~Y~C~A~N~~G~~~~~ 70 (75)
T cd05893 1 VRLECRVSGVPHPQIFWKKENESLTHNTDRVSMHQ----DNCGYICLLIQGATKEDAGWYTVSAKNEAGIVSCT 70 (75)
T ss_pred CEEEEEEeEecCCEEEEEECCEECCCCCCeEEEEE----cCCCEEEEEECCCCHHHCEEEEEEEEcCCCEEEEE
Confidence 579999999999999999999998753 4554321 11222358999999999999999999999987654
No 52
>cd05728 Ig4_Contactin-2-like Fourth Ig domain of the neural cell adhesion molecule contactin-2 and similar proteins. Ig4_Contactin-2-like: fourth Ig domain of the neural cell adhesion molecule contactin-2. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-2 (aliases TAG-1, axonin-1) facilitates cell adhesion by homophilic binding between molecules in apposed membranes. The first four Ig domains form the intermolecular binding fragment which arranges as a compact U-shaped module by contacts between Ig domains 1 and 4, and domains 2 and 3. It has been proposed that a linear zipper-like array forms, from contactin-2 molecules alternatively provided by the two apposed membranes.
Probab=99.59 E-value=8.8e-15 Score=99.69 Aligned_cols=77 Identities=34% Similarity=0.570 Sum_probs=63.1
Q ss_pred CCCCCCCeEEEEEeeecCCCCCeEEEEeCCeeCCCCCCceeeecCCCeeeEEEcccCCCCCeEEEEEEEecccceeeEEE
Q psy15667 203 DGLPEGARTRVICGVTHGDPPLTIRWLKDGKPLSPRFPVNVSDLDSFSSLLSINSVSAAHSGEYTCVASNTAAQARYSSK 282 (286)
Q Consensus 203 ~~~~~g~~~~l~c~~~~~~p~~~~~W~~~g~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~N~~g~~~~~~~ 282 (286)
..+.+|+.+.|.|.+. |.|.|.+.|+|+|..+....++... ++.|.|.++..+|+|.|+|.|.|..|....++.
T Consensus 9 ~~~~~G~~~~l~C~~~-g~p~p~v~W~k~g~~~~~~~~~~~~-----~~~L~i~~~~~~D~G~Y~C~a~N~~G~~~~~~~ 82 (85)
T cd05728 9 TEADIGSSLRWECKAS-GNPRPAYRWLKNGQPLASENRIEVE-----AGDLRITKLSLSDSGMYQCVAENKHGTIYASAE 82 (85)
T ss_pred cEEcCCCcEEEEEEee-EeCCCEEEEEECCEECCCCCeEEEe-----CCEEEEeeCCHHHCEEEEEEEECCCCeEEEEEE
Confidence 3466788888888764 6778899999999988665544332 357999999999999999999999999999999
Q ss_pred EEE
Q psy15667 283 LQV 285 (286)
Q Consensus 283 L~V 285 (286)
|.|
T Consensus 83 l~V 85 (85)
T cd05728 83 LAV 85 (85)
T ss_pred EEC
Confidence 876
No 53
>cd05848 Ig1_Contactin-5 First Ig domain of contactin-5. Ig1_Contactin-5: First Ig domain of the neural cell adhesion molecule contactin-5. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains, anchored to the membrane by glycosylphosphatidylinositol. The different contactins show different expression patterns in the central nervous system. In rats, a lack of contactin-5 (NB-2) results in an impairment of the neuronal activity in the auditory system. Contactin-5 is expressed specifically in the postnatal nervous system, peaking at about 3 weeks postnatal. Contactin-5 is highly expressed in the adult human brain in the occipital lobe and in the amygdala; lower levels of expression have been detected in the corpus callosum, caudate nucleus, and spinal cord.
Probab=99.59 E-value=1.7e-14 Score=100.09 Aligned_cols=82 Identities=29% Similarity=0.525 Sum_probs=64.0
Q ss_pred CCeeEecccccccc---CCCcEEEEEEeecCCCCeeEEeeCCEEcCCCCeeEeceEEecccceeEEEEEcccc-cCCCeE
Q psy15667 2 PPILTYSFIEQTLQ---PGPAVSLKCIASGNPTPDIGWTLDGFELPTNNRFVIGQFVSGHGDVISHVNISHVT-VEDGGE 77 (286)
Q Consensus 2 ~p~~~~~~~~~~~~---~G~~~~l~C~~~g~p~p~v~W~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~I~~~~-~~D~G~ 77 (286)
.|.|...+.++.+. +|+.++|.|.+.|.|.|+++|+|||..|.....+... ...+ .|.|.++. .+|+|.
T Consensus 1 ~P~f~~~p~~~~~~~~~~g~~v~l~C~~~G~P~P~i~W~k~g~~l~~~~~~~~~---~~~g----~L~i~~~~~~~D~G~ 73 (94)
T cd05848 1 GPVFVQEPDDAIFPTDSDEKKVILNCEARGNPVPTYRWLRNGTEIDTESDYRYS---LIDG----NLIISNPSEVKDSGR 73 (94)
T ss_pred CCeeEECCCcEEccCCCCCCEEEEEEEeeecCCCEEEEEECCeECccCCCceEE---eeCC----eEEEccCCccCcCEE
Confidence 38888888887664 4789999999999999999999999998643322211 1122 37788875 699999
Q ss_pred EEEEEEcCCEEEE
Q psy15667 78 YACVAENRAGTCE 90 (286)
Q Consensus 78 Y~C~a~n~~g~~~ 90 (286)
|+|.|.|..|...
T Consensus 74 Y~C~A~N~~G~~~ 86 (94)
T cd05848 74 YQCLATNSIGSIL 86 (94)
T ss_pred EEEEEEcCCCeEE
Confidence 9999999998764
No 54
>cd05730 Ig3_NCAM-1_like Third immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM). Ig3_NCAM-1_like: domain similar to the third immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM). NCAM plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM), and heterophilic (NCAM-non-NCAM), interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves Ig1, Ig2, and Ig3. By this model, Ig1,and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM molecules expressed on the
Probab=99.59 E-value=1.2e-14 Score=101.29 Aligned_cols=83 Identities=35% Similarity=0.651 Sum_probs=66.4
Q ss_pred CCeeEecc--ccccccCCCcEEEEEEeecCCCCeeEEeeCCEEcCCC-CeeEeceEEecccceeEEEEEcccccCCCeEE
Q psy15667 2 PPILTYSF--IEQTLQPGPAVSLKCIASGNPTPDIGWTLDGFELPTN-NRFVIGQFVSGHGDVISHVNISHVTVEDGGEY 78 (286)
Q Consensus 2 ~p~~~~~~--~~~~~~~G~~~~l~C~~~g~p~p~v~W~~~~~~l~~~-~~~~~~~~~~~~~~~~~~l~I~~~~~~D~G~Y 78 (286)
||.|.... .+..+..|+++.|.|.+.|.|.|.+.|+++|..+... .++... ..+ ..|.|.+++.+|+|.|
T Consensus 1 pp~i~~~~~~~~~~~~~G~~v~L~C~~~g~P~p~v~W~k~g~~~~~~~~~~~~~----~~~---~~L~I~~v~~~D~G~Y 73 (95)
T cd05730 1 PPTIRARQSEVNATANLGQSVTLACDADGFPEPTMTWTKDGEPIESGEEKYSFN----EDG---SEMTILDVDKLDEAEY 73 (95)
T ss_pred CCccccCCcccceEEeCCCCEEEEEeccEeCCCEEEEEECCEECcCCCCEEEEe----CCC---CEEEECCCChhhCEEE
Confidence 77777654 3447899999999999999999999999999998764 444321 112 2488999999999999
Q ss_pred EEEEEcCCEEEEE
Q psy15667 79 ACVAENRAGTCEI 91 (286)
Q Consensus 79 ~C~a~n~~g~~~~ 91 (286)
+|.|.|..|....
T Consensus 74 ~C~a~N~~G~~~~ 86 (95)
T cd05730 74 TCIAENKAGEQEA 86 (95)
T ss_pred EEEEEcCCCeEEE
Confidence 9999999987643
No 55
>cd05891 Ig_M-protein_C C-terminal immunoglobulin (Ig)-like domain of M-protein (also known as myomesin-2). Ig_M-protein_C: the C-terminal immunoglobulin (Ig)-like domain of M-protein (also known as myomesin-2). M-protein is a structural protein localized to the M-band, a transverse structure in the center of the sarcomere, and is a candidate for M-band bridges. M-protein is modular consisting mainly of repetitive IG-like and fibronectin type III (FnIII) domains, and has a muscle-type specific expression pattern. M-protein is present in fast fibers.
Probab=99.59 E-value=2e-14 Score=99.35 Aligned_cols=80 Identities=21% Similarity=0.350 Sum_probs=62.6
Q ss_pred CCCCCeEEEEEeeecCCCCCeEEEEeCCeeCCCCCCceeeecCCCeeeEEEcccCCCCCeEEEEEEEecccceeeEEEEE
Q psy15667 205 LPEGARTRVICGVTHGDPPLTIRWLKDGKPLSPRFPVNVSDLDSFSSLLSINSVSAAHSGEYTCVASNTAAQARYSSKLQ 284 (286)
Q Consensus 205 ~~~g~~~~l~c~~~~~~p~~~~~W~~~g~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~N~~g~~~~~~~L~ 284 (286)
+.+|+.+.|.|.+. |.|.|.+.|+|++..+....++.+.........|.|.+++.+|+|.|+|.|.|.+|....++.|+
T Consensus 13 v~eG~~v~L~C~v~-g~P~p~i~W~k~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~~~~~v~ 91 (92)
T cd05891 13 IMEGKTLNLTCTVF-GNPDPEVIWFKNDQDIELSEHYSVKLEQGKYASLTIKGVTSEDSGKYSINVKNKYGGETVDVTVS 91 (92)
T ss_pred EcCCCEEEEEEEEE-EeCCCeEEEEECCEECCCCCCEEEEEcCCCEEEEEECCCChhhCEEEEEEEEeCCCceeeEEEEE
Confidence 56777777777664 56788899999998876655544433222234799999999999999999999999999999887
Q ss_pred E
Q psy15667 285 V 285 (286)
Q Consensus 285 V 285 (286)
|
T Consensus 92 ~ 92 (92)
T cd05891 92 V 92 (92)
T ss_pred C
Confidence 6
No 56
>cd05849 Ig1_Contactin-1 First Ig domain of contactin-1. Ig1_Contactin-1: First Ig domain of the neural cell adhesion molecule contactin-1. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-1 is differentially expressed in tumor tissues and may, through a RhoA mechanism, facilitate invasion and metastasis of human lung adenocarcinoma.
Probab=99.58 E-value=1.5e-14 Score=100.09 Aligned_cols=81 Identities=25% Similarity=0.513 Sum_probs=64.7
Q ss_pred CCeeEeccccccccCCC---cEEEEEEeecCCCCeeEEeeCCEEcCC-CCeeEeceEEecccceeEEEEEcccc-cCCCe
Q psy15667 2 PPILTYSFIEQTLQPGP---AVSLKCIASGNPTPDIGWTLDGFELPT-NNRFVIGQFVSGHGDVISHVNISHVT-VEDGG 76 (286)
Q Consensus 2 ~p~~~~~~~~~~~~~G~---~~~l~C~~~g~p~p~v~W~~~~~~l~~-~~~~~~~~~~~~~~~~~~~l~I~~~~-~~D~G 76 (286)
+|+|...+.++.+.++. .+.|.|.+.|+|.|+++|+|++..+.. ..++.+ ..+ .|.|.++. .+|+|
T Consensus 1 ~P~f~~~P~~~~~~~~~~~~~v~l~C~a~G~P~P~i~W~k~~~~i~~~~~~~~~-----~~g----~L~I~~~~~~~D~G 71 (93)
T cd05849 1 GPVFEEQPIDTIYPEESTEGKVSVNCRARANPFPIYKWRKNNLDIDLTNDRYSM-----VGG----NLVINNPDKYKDAG 71 (93)
T ss_pred CCEEEECCCCEEecCCccCCeEEEeCcCccCCCCEEEEEECCEEccCCCCeEEE-----ECC----EEEECcCCcCCCCE
Confidence 58999999888766544 899999999999999999999998853 344432 122 47898885 68999
Q ss_pred EEEEEEEcCCEEEEE
Q psy15667 77 EYACVAENRAGTCEI 91 (286)
Q Consensus 77 ~Y~C~a~n~~g~~~~ 91 (286)
.|+|.|.|..|....
T Consensus 72 ~Y~C~A~N~~G~~~s 86 (93)
T cd05849 72 RYVCIVSNIYGKVRS 86 (93)
T ss_pred EEEEEEEeCcceEEE
Confidence 999999999997653
No 57
>cd05855 Ig_TrkB_d5 Fifth domain (immunoglobulin-like) of Trk receptor TrkB. TrkB_d5: the fifth domain of Trk receptor TrkB, this is an immunoglobulin (Ig)-like domain which binds to neurotrophin. The Trk family of receptors are tyrosine kinase receptors, which mediate the trophic effects of the neurotrophin Nerve growth factor (NGF) family. The Trks are activated by dimerization, leading to autophosphorylation of intracellular tyrosine residues, and triggering the signal transduction pathway. TrkB shares significant sequence homology and domain organization with TrkA, and TrkC. The first three domains are leucine-rich domains. The fourth and fifth domains are Ig-like domains playing a part in ligand binding. TrKB is recognized by brain-derived neurotrophic factor (BDNF) and neurotrophin (NT)-4. In some cell systems NT-3 can activate TrkA and TrkB receptors. TrKB transcripts are found throughout multiple structures of the central and peripheral nervous systems.
Probab=99.58 E-value=1.4e-14 Score=96.30 Aligned_cols=69 Identities=23% Similarity=0.368 Sum_probs=52.8
Q ss_pred EEEEeecCCCCeeEEeeCCEEcCCCCeeEeceEEecccceeEEEEEcccccCCCeEEEEEEEcCCEEEE
Q psy15667 22 LKCIASGNPTPDIGWTLDGFELPTNNRFVIGQFVSGHGDVISHVNISHVTVEDGGEYACVAENRAGTCE 90 (286)
Q Consensus 22 l~C~~~g~p~p~v~W~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~I~~~~~~D~G~Y~C~a~n~~g~~~ 90 (286)
+.|.+.|+|.|.|+|+|||++|..+.++...............|.|.+++.+|+|.|+|.|+|..|..+
T Consensus 3 i~~~v~G~P~Pti~W~kng~~l~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~YtC~A~N~~G~~~ 71 (79)
T cd05855 3 IPFTVKGNPKPTLQWFHEGAILNESEYICTKIHVINNTEYHGCLQLDNPTHLNNGIYTLVAKNEYGEDE 71 (79)
T ss_pred EEEEEeEeCCCceEEEECCEECCCCcceeeeeEeecccceEEEEEECCCCcccCEEEEEEEEcCCcccc
Confidence 679999999999999999999987655422111111112234699999999999999999999998764
No 58
>cd05876 Ig3_L1-CAM Third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). Ig3_L1-CAM: third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains, five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. This group also contains the chicken neuron-glia cell adhesion molecule, Ng-CAM.
Probab=99.58 E-value=1e-14 Score=95.80 Aligned_cols=70 Identities=27% Similarity=0.466 Sum_probs=54.9
Q ss_pred EEEEeeecCCCCCeEEEEeCCeeCCCCCCceeeecCCCeeeEEEcccCCCCCeEEEEEEEecccceeeEEEEEEC
Q psy15667 212 RVICGVTHGDPPLTIRWLKDGKPLSPRFPVNVSDLDSFSSLLSINSVSAAHSGEYTCVASNTAAQARYSSKLQVK 286 (286)
Q Consensus 212 ~l~c~~~~~~p~~~~~W~~~g~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~N~~g~~~~~~~L~V~ 286 (286)
.|.|.+. |.|.|.+.|+|++..+..... ... .....|.|.++..+|+|.|+|.|.|.+|..+.++.|.|+
T Consensus 2 ~L~C~~~-G~P~P~v~W~k~~~~~~~~~~-~~~---~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~~~l~Ve 71 (71)
T cd05876 2 VLECIAE-GLPTPEVHWDRIDGPLSPNRT-KKL---NNNKTLQLDNVLESDDGEYVCTAENSEGSARHHYTVTVE 71 (71)
T ss_pred EEEEEee-EecCCeEEEEECCcCCCCCce-eEE---cCCCEEEEcccCHHhCEEEEEEEEcCCCeEEEEEEEEEC
Confidence 4667663 778888889988876644321 111 225689999999999999999999999999999999985
No 59
>cd04972 Ig_TrkABC_d4 Fourth domain (immunoglobulin-like) of Trk receptors TrkA, TrkB and TrkC. TrkABC_d4: the fourth domain of Trk receptors TrkA, TrkB and TrkC, this is an immunoglobulin (Ig)-like domain which binds to neurotrophin. The Trk family of receptors are tyrosine kinase receptors. They are activated by dimerization, leading to autophosphorylation of intracellular tyrosine residues, and triggering the signal transduction pathway. TrkA, TrkB, and TrkC share significant sequence homology and domain organization. The first three domains are leucine-rich domains. The fourth and fifth domains are Ig-like domains playing a part in ligand binding. TrkA, Band C mediate the trophic effects of the neurotrophin Nerve growth factor (NGF) family. TrkA is recognized by NGF. TrKB is recognized by brain-derived neurotrophic factor (BDNF) and neurotrophin (NT)-4. TrkC is recognized by NT-3. NT-3 is promiscuous as in some cell systems it activates TrkA and TrkB receptors. TrkA is a receptor fo
Probab=99.58 E-value=2.7e-14 Score=98.42 Aligned_cols=81 Identities=21% Similarity=0.422 Sum_probs=63.1
Q ss_pred EeccccccccCCCcEEEEEEeecCCCCeeEEeeCCEEcCCCCeeEeceEEecccceeEEEEEcccccCCCeEEEEEEEcC
Q psy15667 6 TYSFIEQTLQPGPAVSLKCIASGNPTPDIGWTLDGFELPTNNRFVIGQFVSGHGDVISHVNISHVTVEDGGEYACVAENR 85 (286)
Q Consensus 6 ~~~~~~~~~~~G~~~~l~C~~~g~p~p~v~W~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~I~~~~~~D~G~Y~C~a~n~ 85 (286)
...+.+.++.+|+.+.|.|.+.|+|.|.+.|++||..+......... .......|.|.++..+|.|.|+|.|.|.
T Consensus 4 v~~p~~~~v~~G~~v~l~C~~~G~P~p~v~W~~~g~~~~~~~~~~~~-----~~~~~~~L~I~~v~~~D~g~Y~C~A~N~ 78 (90)
T cd04972 4 VDGPNATVVYEGGTATIRCTAEGSPLPKVEWIIAGLIVIQTRTDTLE-----TTVDIYNLQLSNITSETQTTVTCTAENP 78 (90)
T ss_pred ccCCcCEEEcCCCcEEEEEEEEEcCCCeEEEEECCEEccCCccEEEE-----ecCCEEEEEEecCCcccCEEEEEEEECC
Confidence 34455667999999999999999999999999999988654332111 1111236899999999999999999999
Q ss_pred CEEEEE
Q psy15667 86 AGTCEI 91 (286)
Q Consensus 86 ~g~~~~ 91 (286)
.|....
T Consensus 79 ~G~~~~ 84 (90)
T cd04972 79 VGQANV 84 (90)
T ss_pred CCceeE
Confidence 987643
No 60
>cd05743 Ig_Perlecan_D2_like Immunoglobulin (Ig)-like domain II (D2) of the human basement membrane heparan sulfate proteoglycan perlecan, also known as HSPG2. Ig_Perlecan_D2_like: the immunoglobulin (Ig)-like domain II (D2) of the human basement membrane heparan sulfate proteoglycan perlecan, also known as HSPG2. Perlecan consists of five domains. Domain I has three putative heparan sulfate attachment sites; domain II has four LDL receptor-like repeats, and one Ig-like repeat; domain III resembles the short arm of laminin chains; domain IV has multiple Ig-like repeats (21 repeats in human perlecan); and domain V resembles the globular G domain of the laminin A chain and internal repeats of EGF. Perlecan may participate in a variety of biological functions including cell binding, LDL-metabolism, basement membrane assembly and selective permeability, calcium binding, and growth- and neurite-promoting activities.
Probab=99.58 E-value=2e-14 Score=96.32 Aligned_cols=71 Identities=34% Similarity=0.586 Sum_probs=58.6
Q ss_pred CCcEEEEEEeecCCCCeeEEeeCCEEcCCCCeeEeceEEecccceeEEEEEcccccCCCeEEEEEEEcCCEEEEEe
Q psy15667 17 GPAVSLKCIASGNPTPDIGWTLDGFELPTNNRFVIGQFVSGHGDVISHVNISHVTVEDGGEYACVAENRAGTCEIT 92 (286)
Q Consensus 17 G~~~~l~C~~~g~p~p~v~W~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~I~~~~~~D~G~Y~C~a~n~~g~~~~~ 92 (286)
|+++.|.|.+.|.|.|.+.|++++..+..+.++.+.. .++ ...|.|.++..+|+|.|+|.|.|..|.....
T Consensus 1 G~~v~l~C~~~g~P~p~v~W~~~~~~~~~~~~~~~~~----~~~-~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~ 71 (78)
T cd05743 1 GETVEFTCVATGVPTPIINWRLNWGHVPDSARVSITS----EGG-YGTLTIRDVKESDQGAYTCEAINTRGMVFGI 71 (78)
T ss_pred CCEEEEEEEEEEecCCEEEEEECCeECCCCCCEEEEE----CCC-EEEEEECCCChHHCEEEEEEEEecCCEEEec
Confidence 7899999999999999999999999987766664321 111 2359999999999999999999999877543
No 61
>cd05758 Ig5_KIRREL3-like Fifth immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 (also known as Neph2) and similar proteins. Ig5_KIRREL3-like: domain similar to the fifth immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 (also known as Neph2). This protein has five Ig-like domains, one transmembrane domain, and a cytoplasmic tail. Included in this group is mammalian Kirrel (Neph1), Kirrel2 (Neph3), and Drosophila RST (irregular chiasm C-roughest) protein. These proteins contain multiple Ig domains, have properties of cell adhesion molecules, and are important in organ development.
Probab=99.58 E-value=2.8e-14 Score=99.97 Aligned_cols=87 Identities=32% Similarity=0.486 Sum_probs=68.1
Q ss_pred CCeeEeccccccccCCCcEEEEEEeecCCCC-eeEEeeCCEEcCCC--CeeEeceEEecccceeEEEEEcccccCC-CeE
Q psy15667 2 PPILTYSFIEQTLQPGPAVSLKCIASGNPTP-DIGWTLDGFELPTN--NRFVIGQFVSGHGDVISHVNISHVTVED-GGE 77 (286)
Q Consensus 2 ~p~~~~~~~~~~~~~G~~~~l~C~~~g~p~p-~v~W~~~~~~l~~~--~~~~~~~~~~~~~~~~~~l~I~~~~~~D-~G~ 77 (286)
||.|. .+..+.+.+|+++.|.|.+.|.|.| .|.|++++..|... .++.+.+... .......|.|.++..+| .|.
T Consensus 2 pp~i~-~~~~~~~~~G~~v~L~C~~~g~P~P~~v~W~~~~~~i~~~~~~r~~i~~~~~-~~~~~s~L~I~~v~~~d~~G~ 79 (98)
T cd05758 2 PPIIT-SEATQYAILGDKGRVECFIFSTPPPDRIVWTWKENELESGSSGRYTVETDPS-PGGVLSTLTISNTQESDFQTS 79 (98)
T ss_pred CCeEc-CCCcEEEeCCCcEEEEEEEcccCCCCEeEEEECCEEccCCCCCCEEEEEecC-CCceEEEEEECCcccccccee
Confidence 78886 4667789999999999999999999 69999999988643 4665533211 12334579999999955 899
Q ss_pred EEEEEEcCCEEEE
Q psy15667 78 YACVAENRAGTCE 90 (286)
Q Consensus 78 Y~C~a~n~~g~~~ 90 (286)
|+|.|.|..|..+
T Consensus 80 Y~C~A~N~~G~~~ 92 (98)
T cd05758 80 YNCTAWNSFGSGT 92 (98)
T ss_pred EEEEEEcCCCccc
Confidence 9999999998754
No 62
>cd05859 Ig4_PDGFR-alpha Fourth immunoglobulin (Ig)-like domain of platelet-derived growth factor receptor (PDGFR) alpha. IG4_PDGFR-alpha: The fourth immunoglobulin (Ig)-like domain of platelet-derived growth factor receptor (PDGFR) alpha. PDGF is a potent mitogen for connective tissue cells. PDGF-stimulated processes are mediated by three different PDGFs (PDGF-A,-B, and C). PDGFR alpha binds to all three PDGFs, whereas the PDGFR beta (not included in this group) binds only to PDGF-B. PDGF alpha is organized as an extracellular component having five Ig-like domains, a transmembrane segment, and a cytoplasmic portion having protein tyrosine kinase activity. In mice, PDGFR alpha and PDGFR beta are essential for normal development.
Probab=99.57 E-value=2.1e-14 Score=100.75 Aligned_cols=82 Identities=18% Similarity=0.197 Sum_probs=62.3
Q ss_pred cccccCCCcEEEEEEeecCCCCeeEEeeCCEEcCCCCeeEeceEEec-ccceeEEEEEcccccCCCeEEEEEEEcCCEEE
Q psy15667 11 EQTLQPGPAVSLKCIASGNPTPDIGWTLDGFELPTNNRFVIGQFVSG-HGDVISHVNISHVTVEDGGEYACVAENRAGTC 89 (286)
Q Consensus 11 ~~~~~~G~~~~l~C~~~g~p~p~v~W~~~~~~l~~~~~~~~~~~~~~-~~~~~~~l~I~~~~~~D~G~Y~C~a~n~~g~~ 89 (286)
.+++..|+.+.|.|.+.|.|+|.+.|+|||.+|..+.+......... .......|.|.++..+|+|.|+|.|.|..|..
T Consensus 12 ~~~~~~~~~~~l~~~v~g~P~P~v~W~kdg~~l~~~~~~~~~~~~~~~~~~~~s~L~I~~v~~~D~G~Ytc~A~N~~g~~ 91 (101)
T cd05859 12 LEFANLHEVKEFVVEVEAYPPPQIRWLKDNRTLIENLTEITTSEHNVQETRYVSKLKLIRAKEEDSGLYTALAQNEDAVK 91 (101)
T ss_pred eEEEecCCcEEEEEEEEEeCCCceEEEECCEECcCCcceEEeccccccceeeccEEEEeeCCHHHCEEEEEEEEcCCceE
Confidence 45678999999999999999999999999999986554322100000 00112469999999999999999999999887
Q ss_pred EEe
Q psy15667 90 EIT 92 (286)
Q Consensus 90 ~~~ 92 (286)
+.+
T Consensus 92 ~~t 94 (101)
T cd05859 92 SYT 94 (101)
T ss_pred EEE
Confidence 543
No 63
>cd05763 Ig_1 Subgroup of the immunoglobulin (Ig) superfamily. Ig_1: subgroup of the immunoglobulin (Ig) domain found in the Ig superfamily. The Ig superfamily is a heterogenous group of proteins, built on a common fold comprised of a sandwich of two beta sheets. Members of the Ig superfamily are components of immunoglobulin, neuroglia, cell surface glycoproteins, such as T-cell receptors, CD2, CD4, CD8, and membrane glycoproteins, such as butyrophilin and chondroitin sulfate proteoglycan core protein. A predominant feature of most Ig domains is a disulfide bridge connecting the two beta-sheets with a tryptophan residue packed against the disulfide bond.
Probab=99.57 E-value=1.6e-14 Score=95.99 Aligned_cols=72 Identities=29% Similarity=0.477 Sum_probs=53.8
Q ss_pred EEEEeeecCCCCCeEEEEeCCeeCCCC-CCceeeecCCCeeeEEEcccCCCCCeEEEEEEEecccceeeEEEEEE
Q psy15667 212 RVICGVTHGDPPLTIRWLKDGKPLSPR-FPVNVSDLDSFSSLLSINSVSAAHSGEYTCVASNTAAQARYSSKLQV 285 (286)
Q Consensus 212 ~l~c~~~~~~p~~~~~W~~~g~~~~~~-~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~N~~g~~~~~~~L~V 285 (286)
.|.|.+ .|.|.|.++|+|+|....+. ....+... .....|.|.+++.+|+|.|+|.|.|..|.....+.|.|
T Consensus 2 ~l~C~~-~G~P~P~v~W~k~~~~~~~~~~~~~~~~~-~~~~~L~I~~~~~~D~G~Y~C~A~N~~G~~~~~~~l~V 74 (75)
T cd05763 2 RLECAA-TGHPTPQIAWQKDGGTDFPAARERRMHVM-PEDDVFFIVDVKIEDTGVYSCTAQNTAGSISANATLTV 74 (75)
T ss_pred EeEeec-ccccCCEEEEEeCCCccCCcccccceEEe-cCCCEEEEeeCCcccCEEEEEEEEcCCCEEEeeEEEEE
Confidence 577866 47888899999988643221 11111111 12357899999999999999999999999999999987
No 64
>cd05850 Ig1_Contactin-2 First Ig domain of contactin-2. Ig1_Contactin-2: First Ig domain of the neural cell adhesion molecule contactin-2-like. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-2 (TAG-1, axonin-1) facilitates cell adhesion by homophilic binding between molecules in apposed membranes. It may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module by contacts between IG domains 1 and 4, and domains 2 and 3. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-2 is also expressed in retinal amacrine cells in the developing c
Probab=99.57 E-value=2.6e-14 Score=99.19 Aligned_cols=81 Identities=27% Similarity=0.534 Sum_probs=64.3
Q ss_pred CCeeEeccccccccCC---CcEEEEEEeecCCCCeeEEeeCCEEcCCC--CeeEeceEEecccceeEEEEEcccc-cCCC
Q psy15667 2 PPILTYSFIEQTLQPG---PAVSLKCIASGNPTPDIGWTLDGFELPTN--NRFVIGQFVSGHGDVISHVNISHVT-VEDG 75 (286)
Q Consensus 2 ~p~~~~~~~~~~~~~G---~~~~l~C~~~g~p~p~v~W~~~~~~l~~~--~~~~~~~~~~~~~~~~~~l~I~~~~-~~D~ 75 (286)
.|.|...+.++.+.+| ++++|.|.+.|+|.|.++|++||..|... .++.+ ..+ .|.|.++. ..|+
T Consensus 1 ~P~f~~~P~~~~~~~~~~g~~v~l~C~a~g~P~p~i~W~~~g~~l~~~~~~~~~~-----~~g----~L~I~~~~~~~D~ 71 (94)
T cd05850 1 GPVFEEQPSSLLFPEGSPEEKVTLGCRARASPPATYRWKMNGTEIKFAPESRYTL-----VAG----NLVINNPQKARDA 71 (94)
T ss_pred CCeeEECCCCEEecCCCCCCeEEEEeEceeCCCCEEEEEECCEECccCCCceEEE-----ECC----eEEEccCCccCcC
Confidence 4788989999987666 58999999999999999999999998643 23322 122 37788765 5999
Q ss_pred eEEEEEEEcCCEEEEE
Q psy15667 76 GEYACVAENRAGTCEI 91 (286)
Q Consensus 76 G~Y~C~a~n~~g~~~~ 91 (286)
|.|+|.|.|..|....
T Consensus 72 G~Y~C~A~N~~G~~~s 87 (94)
T cd05850 72 GSYQCLAINRCGTVVS 87 (94)
T ss_pred EEEEEEEEcCcCcEEE
Confidence 9999999999997653
No 65
>cd04978 Ig4_L1-NrCAM_like Fourth immunoglobulin (Ig)-like domain of L1, Ng-CAM (Neuron-glia CAM cell adhesion molecule), and NrCAM (Ng-CAM-related). Ig4_L1-NrCAM_like: fourth immunoglobulin (Ig)-like domain of L1, Ng-CAM (Neuron-glia CAM cell adhesion molecule), and NrCAM (Ng-CAM-related). These proteins belong to the L1 subfamily of cell adhesion molecules (CAMs) and are comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. These molecules are primarily expressed in the nervous system. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth.
Probab=99.57 E-value=2.3e-14 Score=95.58 Aligned_cols=76 Identities=25% Similarity=0.359 Sum_probs=59.7
Q ss_pred CCeEEEEEeeecCCCCCeEEEEeCCeeCCCCCCceeeecCCCeeeEEEcccCCCCCeEEEEEEEecccceeeEEEEEEC
Q psy15667 208 GARTRVICGVTHGDPPLTIRWLKDGKPLSPRFPVNVSDLDSFSSLLSINSVSAAHSGEYTCVASNTAAQARYSSKLQVK 286 (286)
Q Consensus 208 g~~~~l~c~~~~~~p~~~~~W~~~g~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~N~~g~~~~~~~L~V~ 286 (286)
|+.+.|.|.+. |.|.|.+.|+++|..+.......... .....|.|.+++.+|+|.|+|.|.|..|.....+.|.|.
T Consensus 1 G~~~~l~C~~~-g~P~p~i~W~~~g~~~~~~~~~~~~~--~~~~~L~i~~v~~~D~G~Y~C~A~N~~G~~~~~~~l~V~ 76 (76)
T cd04978 1 GETGRLDCEAE-GIPQPTITWRLNGVPIEELPPDPRRR--VDGGTLILSNVQPNDTAVYQCNASNVHGYLLANAFVHVV 76 (76)
T ss_pred CCeEEEEEEce-eeCCCEEEEEECCEECCCCCCcceEE--ccCCEEEECCCChhhCEEEEEEEEccCCeEEEeEEEEEC
Confidence 56677888764 78888999999998886543221111 224689999999999999999999999999999999884
No 66
>cd04972 Ig_TrkABC_d4 Fourth domain (immunoglobulin-like) of Trk receptors TrkA, TrkB and TrkC. TrkABC_d4: the fourth domain of Trk receptors TrkA, TrkB and TrkC, this is an immunoglobulin (Ig)-like domain which binds to neurotrophin. The Trk family of receptors are tyrosine kinase receptors. They are activated by dimerization, leading to autophosphorylation of intracellular tyrosine residues, and triggering the signal transduction pathway. TrkA, TrkB, and TrkC share significant sequence homology and domain organization. The first three domains are leucine-rich domains. The fourth and fifth domains are Ig-like domains playing a part in ligand binding. TrkA, Band C mediate the trophic effects of the neurotrophin Nerve growth factor (NGF) family. TrkA is recognized by NGF. TrKB is recognized by brain-derived neurotrophic factor (BDNF) and neurotrophin (NT)-4. TrkC is recognized by NT-3. NT-3 is promiscuous as in some cell systems it activates TrkA and TrkB receptors. TrkA is a receptor fo
Probab=99.57 E-value=3.5e-14 Score=97.85 Aligned_cols=79 Identities=20% Similarity=0.334 Sum_probs=61.1
Q ss_pred CCCCCeEEEEEeeecCCCCCeEEEEeCCeeCCCCCCceeeecCCCeeeEEEcccCCCCCeEEEEEEEecccceeeEEEEE
Q psy15667 205 LPEGARTRVICGVTHGDPPLTIRWLKDGKPLSPRFPVNVSDLDSFSSLLSINSVSAAHSGEYTCVASNTAAQARYSSKLQ 284 (286)
Q Consensus 205 ~~~g~~~~l~c~~~~~~p~~~~~W~~~g~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~N~~g~~~~~~~L~ 284 (286)
+.+|+.+.|.|.+. |.|.|.+.|+++|..+......... .......|.|.+++.+|.|.|+|.|.|.+|....++.|.
T Consensus 12 v~~G~~v~l~C~~~-G~P~p~v~W~~~g~~~~~~~~~~~~-~~~~~~~L~I~~v~~~D~g~Y~C~A~N~~G~~~~~~~L~ 89 (90)
T cd04972 12 VYEGGTATIRCTAE-GSPLPKVEWIIAGLIVIQTRTDTLE-TTVDIYNLQLSNITSETQTTVTCTAENPVGQANVSVQVT 89 (90)
T ss_pred EcCCCcEEEEEEEE-EcCCCeEEEEECCEEccCCccEEEE-ecCCEEEEEEecCCcccCEEEEEEEECCCCceeEEEEEe
Confidence 55677777777765 6788889999999877544332111 122356899999999999999999999999999999987
Q ss_pred E
Q psy15667 285 V 285 (286)
Q Consensus 285 V 285 (286)
|
T Consensus 90 v 90 (90)
T cd04972 90 V 90 (90)
T ss_pred C
Confidence 5
No 67
>cd05854 Ig6_Contactin-2 Sixth Ig domain of contactin-2. Ig6_Contactin-2: Sixth Ig domain of the neural cell adhesion molecule contactin-2-like. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-2 (TAG-1, axonin-1) facilitates cell adhesion by homophilic binding between molecules in apposed membranes. It may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module by contacts between IG domains 1 and 4, and domains 2 and 3. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-2 is also expressed in retinal amacrine cells in the developing c
Probab=99.57 E-value=3.5e-14 Score=96.55 Aligned_cols=76 Identities=25% Similarity=0.408 Sum_probs=54.7
Q ss_pred eEEEEEeeecCCCCC--eEEEEeCCeeCCCCC---CceeeecCCCeeeEEEcccCCCCCeEEEEEEEecccceeeEEEEE
Q psy15667 210 RTRVICGVTHGDPPL--TIRWLKDGKPLSPRF---PVNVSDLDSFSSLLSINSVSAAHSGEYTCVASNTAAQARYSSKLQ 284 (286)
Q Consensus 210 ~~~l~c~~~~~~p~~--~~~W~~~g~~~~~~~---~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~N~~g~~~~~~~L~ 284 (286)
.+.|.|.+. |.|.| .+.|+|+|..+.... ++.+.......+.|.|.+++.+|+|.|+|.|.|.+|...+++.|.
T Consensus 2 ~~~L~C~a~-g~P~p~~~v~W~~~g~~i~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~YtC~A~n~~g~~~~~~~L~ 80 (85)
T cd05854 2 NLTLQCHAS-HDPTMDLTFTWSLDDFPIDLDKPNGHYRRMEVKETIGDLVIVNAQLSHAGTYTCTAQTVVDSASASATLV 80 (85)
T ss_pred cEEEEEEEe-cCCCCCeEEEEEECCeEccccCCCCcEEEEEecceEeEEEEccCChhhCeEEEEEEecCCCCEEEEEEEE
Confidence 345566554 34443 678999998875432 221111112346899999999999999999999999999999998
Q ss_pred EC
Q psy15667 285 VK 286 (286)
Q Consensus 285 V~ 286 (286)
|+
T Consensus 81 V~ 82 (85)
T cd05854 81 VR 82 (85)
T ss_pred EE
Confidence 84
No 68
>cd05891 Ig_M-protein_C C-terminal immunoglobulin (Ig)-like domain of M-protein (also known as myomesin-2). Ig_M-protein_C: the C-terminal immunoglobulin (Ig)-like domain of M-protein (also known as myomesin-2). M-protein is a structural protein localized to the M-band, a transverse structure in the center of the sarcomere, and is a candidate for M-band bridges. M-protein is modular consisting mainly of repetitive IG-like and fibronectin type III (FnIII) domains, and has a muscle-type specific expression pattern. M-protein is present in fast fibers.
Probab=99.57 E-value=2.9e-14 Score=98.57 Aligned_cols=82 Identities=23% Similarity=0.433 Sum_probs=66.0
Q ss_pred eccccccccCCCcEEEEEEeecCCCCeeEEeeCCEEcCCCCeeEeceEEecccceeEEEEEcccccCCCeEEEEEEEcCC
Q psy15667 7 YSFIEQTLQPGPAVSLKCIASGNPTPDIGWTLDGFELPTNNRFVIGQFVSGHGDVISHVNISHVTVEDGGEYACVAENRA 86 (286)
Q Consensus 7 ~~~~~~~~~~G~~~~l~C~~~g~p~p~v~W~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~I~~~~~~D~G~Y~C~a~n~~ 86 (286)
..+..+++.+|+.+.|.|.+.|.|.|.+.|++++..+..+.++.+.. ..+. ...|.|.+++.+|+|.|+|.|.|..
T Consensus 6 ~~p~~v~v~eG~~v~L~C~v~g~P~p~i~W~k~~~~~~~~~~~~~~~---~~~~-~~~L~I~~~~~~D~G~Y~C~a~N~~ 81 (92)
T cd05891 6 GLPDVVTIMEGKTLNLTCTVFGNPDPEVIWFKNDQDIELSEHYSVKL---EQGK-YASLTIKGVTSEDSGKYSINVKNKY 81 (92)
T ss_pred cCCCcEEEcCCCEEEEEEEEEEeCCCeEEEEECCEECCCCCCEEEEE---cCCC-EEEEEECCCChhhCEEEEEEEEeCC
Confidence 34566789999999999999999999999999999887766654321 1122 2469999999999999999999999
Q ss_pred EEEEEe
Q psy15667 87 GTCEIT 92 (286)
Q Consensus 87 g~~~~~ 92 (286)
|..+..
T Consensus 82 G~~~~~ 87 (92)
T cd05891 82 GGETVD 87 (92)
T ss_pred CceeeE
Confidence 876543
No 69
>cd05866 Ig1_NCAM-2 First immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-2. Ig1_NCAM-2: first immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-2 (OCAM/mamFas II, RNCAM). NCAM-2 is organized similarly to NCAM , including five N-terminal Ig-like domains and two fibronectin type III domains. NCAM-2 is differentially expressed in the developing and mature olfactory epithelium (OE), and may function like NCAM, as an adhesion molecule.
Probab=99.57 E-value=2.5e-14 Score=98.45 Aligned_cols=80 Identities=28% Similarity=0.523 Sum_probs=63.7
Q ss_pred eEeccccccccCCCcEEEEEEeecCCCCeeEEee-CCEEcCCCCeeEeceEEecccceeEEEEEcccccCCCeEEEEEEE
Q psy15667 5 LTYSFIEQTLQPGPAVSLKCIASGNPTPDIGWTL-DGFELPTNNRFVIGQFVSGHGDVISHVNISHVTVEDGGEYACVAE 83 (286)
Q Consensus 5 ~~~~~~~~~~~~G~~~~l~C~~~g~p~p~v~W~~-~~~~l~~~~~~~~~~~~~~~~~~~~~l~I~~~~~~D~G~Y~C~a~ 83 (286)
+...+.+..+.+|+++.|.|.+.|.|. .+.|++ ++..+....|+.+. .++. ...|.|.++..+|+|.|+|.|.
T Consensus 3 ~~~~~~~~~v~~G~~v~l~C~~~G~P~-~v~W~k~~g~~~~~~~r~~~~----~~g~-~~~L~I~~v~~~D~G~Y~C~A~ 76 (92)
T cd05866 3 VSISLSKVELSVGESKFFTCTAIGEPE-SIDWYNPQGEKIVSSQRVVVQ----KEGV-RSRLTIYNANIEDAGIYRCQAT 76 (92)
T ss_pred EEEEecceEEcCCCeEEEEEEEEEeCC-eEEEEeCCCeEecCCCCEEEE----eCCC-eeEEEEecCChHHCEEEEEEEE
Confidence 345677889999999999999999998 899998 56777666666432 1222 2369999999999999999999
Q ss_pred cCCEEEE
Q psy15667 84 NRAGTCE 90 (286)
Q Consensus 84 n~~g~~~ 90 (286)
|..|...
T Consensus 77 N~~G~~~ 83 (92)
T cd05866 77 DAKGQTQ 83 (92)
T ss_pred cCCCcEE
Confidence 9988653
No 70
>cd05739 Ig3_RPTP_IIa_LAR_like Third immunoglobulin (Ig)-like domain of the receptor protein tyrosine phosphatase (RPTP)-F, also known as LAR. Ig3_RPTP_IIa_LAR_like: domain similar to the third immunoglobulin (Ig)-like domain found in the receptor protein tyrosine phosphatase (RPTP)-F, also known as LAR. LAR belongs to the RPTP type IIa subfamily. Members of this subfamily are cell adhesion molecule-like proteins involved in central nervous system (CNS) development. They have large extracellular portions, comprised of multiple IG-like domains and two to nine fibronectin type III (FNIII) domains, and a cytoplasmic portion having two tandem phosphatase domains. Included in this group is Drosophila LAR (DLAR).
Probab=99.56 E-value=3.1e-14 Score=92.72 Aligned_cols=65 Identities=31% Similarity=0.667 Sum_probs=52.5
Q ss_pred CCcEEEEEEeecCCCCeeEEeeCCEEcCCCCeeEeceEEecccceeEEEEEcccccCCCeEEEEEEEcCCEEEEEe
Q psy15667 17 GPAVSLKCIASGNPTPDIGWTLDGFELPTNNRFVIGQFVSGHGDVISHVNISHVTVEDGGEYACVAENRAGTCEIT 92 (286)
Q Consensus 17 G~~~~l~C~~~g~p~p~v~W~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~I~~~~~~D~G~Y~C~a~n~~g~~~~~ 92 (286)
|++++|.|.+.|+|.|.|.|+|++.+|....++.. +. ..|.|.++ .|+|.|+|.|.|..|..+.+
T Consensus 1 G~~v~L~C~a~G~P~P~v~W~k~g~~l~~~~~~~~-------~~--~~L~i~~~--~d~G~Y~C~A~N~~G~~~~~ 65 (69)
T cd05739 1 GGSVNLTCVAVGAPMPYVKWMKGGEELTKEDEMPV-------GR--NVLELTNI--YESANYTCVAISSLGMIEAT 65 (69)
T ss_pred CCeEEEEEEeeecCCCEEEEEECCEECCCccceec-------Cc--cEEEEecc--ccCeeEEEEEEeCCCEEEEE
Confidence 78999999999999999999999999876554321 11 14778887 48999999999999987643
No 71
>cd05855 Ig_TrkB_d5 Fifth domain (immunoglobulin-like) of Trk receptor TrkB. TrkB_d5: the fifth domain of Trk receptor TrkB, this is an immunoglobulin (Ig)-like domain which binds to neurotrophin. The Trk family of receptors are tyrosine kinase receptors, which mediate the trophic effects of the neurotrophin Nerve growth factor (NGF) family. The Trks are activated by dimerization, leading to autophosphorylation of intracellular tyrosine residues, and triggering the signal transduction pathway. TrkB shares significant sequence homology and domain organization with TrkA, and TrkC. The first three domains are leucine-rich domains. The fourth and fifth domains are Ig-like domains playing a part in ligand binding. TrKB is recognized by brain-derived neurotrophic factor (BDNF) and neurotrophin (NT)-4. In some cell systems NT-3 can activate TrkA and TrkB receptors. TrKB transcripts are found throughout multiple structures of the central and peripheral nervous systems.
Probab=99.56 E-value=2.6e-14 Score=94.92 Aligned_cols=71 Identities=20% Similarity=0.344 Sum_probs=55.0
Q ss_pred EEEeeecCCCCCeEEEEeCCeeCCCCCCceee--e--cCCCeeeEEEcccCCCCCeEEEEEEEecccceeeEEEEE
Q psy15667 213 VICGVTHGDPPLTIRWLKDGKPLSPRFPVNVS--D--LDSFSSLLSINSVSAAHSGEYTCVASNTAAQARYSSKLQ 284 (286)
Q Consensus 213 l~c~~~~~~p~~~~~W~~~g~~~~~~~~~~~~--~--~~~~~~~L~i~~v~~~d~G~Y~C~a~N~~g~~~~~~~L~ 284 (286)
+.|.+ .|.|.|+++|+|+|..+.++.+.... . .....+.|.|.++..+|+|.|+|.|.|..|++..++.+.
T Consensus 3 i~~~v-~G~P~Pti~W~kng~~l~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~YtC~A~N~~G~~~~~~~~~ 77 (79)
T cd05855 3 IPFTV-KGNPKPTLQWFHEGAILNESEYICTKIHVINNTEYHGCLQLDNPTHLNNGIYTLVAKNEYGEDEKNVSAH 77 (79)
T ss_pred EEEEE-eEeCCCceEEEECCEECCCCcceeeeeEeecccceEEEEEECCCCcccCEEEEEEEEcCCcccceEEEee
Confidence 45555 37899999999999999766543221 1 112356899999999999999999999999998887764
No 72
>cd05867 Ig4_L1-CAM_like Fourth immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). Ig4_L1-CAM_like: fourth immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. This group also contains the chicken neuron-glia cell adhesion molecule, Ng-CAM.
Probab=99.56 E-value=3.3e-14 Score=94.75 Aligned_cols=66 Identities=29% Similarity=0.585 Sum_probs=54.4
Q ss_pred CCcEEEEEEeecCCCCeeEEeeCCEEcCCCC---eeEeceEEecccceeEEEEEcccccCCCeEEEEEEEcCCEEEEE
Q psy15667 17 GPAVSLKCIASGNPTPDIGWTLDGFELPTNN---RFVIGQFVSGHGDVISHVNISHVTVEDGGEYACVAENRAGTCEI 91 (286)
Q Consensus 17 G~~~~l~C~~~g~p~p~v~W~~~~~~l~~~~---~~~~~~~~~~~~~~~~~l~I~~~~~~D~G~Y~C~a~n~~g~~~~ 91 (286)
|+++.|.|.+.|.|.|+++|+|||.++.... ++.. .. ..|.|.+++.+|+|.|+|.|.|..|....
T Consensus 1 G~~v~l~C~~~G~P~p~i~W~k~g~~i~~~~~~~~~~~------~~---~~L~I~~~~~~D~G~Y~C~a~N~~G~~~~ 69 (76)
T cd05867 1 GETARLDCQVEGIPTPNITWSINGAPIEGTDPDPRRHV------SS---GALILTDVQPSDTAVYQCEARNRHGNLLA 69 (76)
T ss_pred CCeEEEEEEeeEeCCCeEEEEECCEECCCCCCCceEEe------eC---CEEEECCCChhhCEEEEEEEECCCCeEEE
Confidence 7899999999999999999999999886432 2221 11 14889999999999999999999998754
No 73
>cd04971 Ig_TrKABC_d5 Fifth domain (immunoglobulin-like) of Trk receptors TrkA, TrkB and TrkC. TrkABC_d5: the fifth domain of Trk receptors TrkA, TrkB and TrkC, this is an immunoglobulin (Ig)-like domain which binds to neurotrophin. The Trk family of receptors are tyrosine kinase receptors. They are activated by dimerization, leading to autophosphorylation of intracellular tyrosine residues, and triggering the signal transduction pathway. TrkA, TrkB, and TrkC share significant sequence homology and domain organization. The first three domains are leucine-rich domains. The fourth and fifth domains are Ig-like domains playing a part in ligand binding. TrkA, Band C mediate the trophic effects of the neurotrophin Nerve growth factor (NGF) family. TrkA is recognized by NGF. TrkB is recognized by brain-derived neurotrophic factor (BDNF) and neurotrophin (NT)-4. TrkC is recognized by NT-3. NT-3 is promiscuous as in some cell systems it activates TrkA and TrkB receptors. TrkA is a receptor foun
Probab=99.56 E-value=3.9e-14 Score=95.20 Aligned_cols=72 Identities=24% Similarity=0.360 Sum_probs=55.2
Q ss_pred EEEeeecCCCCCeEEEEeCCeeCCCCCCceeeec------CCCeeeEEEcccCCCCCeEEEEEEEecccceeeEEEEEE
Q psy15667 213 VICGVTHGDPPLTIRWLKDGKPLSPRFPVNVSDL------DSFSSLLSINSVSAAHSGEYTCVASNTAAQARYSSKLQV 285 (286)
Q Consensus 213 l~c~~~~~~p~~~~~W~~~g~~~~~~~~~~~~~~------~~~~~~L~i~~v~~~d~G~Y~C~a~N~~g~~~~~~~L~V 285 (286)
|.|.+ .|.|.|.++|+|+|+.+........... ....+.|.|.++..+|+|.|+|.|.|.+|.+..+..|..
T Consensus 3 i~~~v-~G~P~P~v~W~k~g~~i~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~YtC~A~N~~G~~~~~~~~~~ 80 (81)
T cd04971 3 IPFTV-RGNPKPTLTWYHNGAVLNESDYIRTEIHYEVTTPTEYHGCLQFDNPTHVNNGNYTLVASNEYGQDSKSISAHF 80 (81)
T ss_pred EEEEe-EeeCCCcEEEEECCEECcCCCceeEEEEeecccccccEEEEEECCCCcccCeEEEEEEEeCCCCeeeEEEeee
Confidence 45555 3788999999999999876553322211 123557999999999999999999999999998887753
No 74
>cd04976 Ig2_VEGFR Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor (VEGFR). Ig2_VEGFR: Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor (VEGFR). The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. The VEGFR family consists of three members, VEGFR-1 (Flt-1), VEGFR-2 (KDR/Flk-1) and VEGFR-3 (Flt-4). VEGFRs bind VEGFs with high affinity at the Ig-like domains. VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGFR-2 is a major mediator of the mitogenic, angiogenic and microvascular permeability-enhancing effects of VEGF-A. VEGFR-1 may play an inhibitory part in these processes by binding VEGF and interfering with its interaction with VEGFR-2. VEGFR-1 has a signa
Probab=99.55 E-value=2.5e-14 Score=93.87 Aligned_cols=68 Identities=28% Similarity=0.461 Sum_probs=53.6
Q ss_pred EEEEeeecCCCCCeEEEEeCCeeCCCCCCceeeecCCCeeeEEEcccCCCCCeEEEEEEEecccceeeEEEEEE
Q psy15667 212 RVICGVTHGDPPLTIRWLKDGKPLSPRFPVNVSDLDSFSSLLSINSVSAAHSGEYTCVASNTAAQARYSSKLQV 285 (286)
Q Consensus 212 ~l~c~~~~~~p~~~~~W~~~g~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~N~~g~~~~~~~L~V 285 (286)
.|.|.+. |.|+|.+.|+|+|..+....+.. .....|.|.++..+|+|.|+|.|.|.+|....+..+.|
T Consensus 2 ~l~c~v~-g~P~p~v~W~k~g~~l~~~~~~~-----~~~~~L~I~~v~~~D~G~YtC~a~N~~g~~~~~~~~~~ 69 (71)
T cd04976 2 RLPVKVK-AYPPPEIQWYKNGKLISEKNRTK-----KSGHSLTIKDVTEEDAGNYTVVLTNKQAKLEKRLTFTL 69 (71)
T ss_pred EEEeEEE-EeCCCEEEEEECCEECCCCCEEE-----cCCCEEEECcCCHHHCEEEEEEEEcCCccEEEEEEEEE
Confidence 5677764 67888999999999887653221 12467999999999999999999999998777766654
No 75
>cd05748 Ig_Titin_like Immunoglobulin (Ig)-like domain of titin and similar proteins. Ig_Titin_like: immunoglobulin (Ig)-like domain found in titin-like proteins. Titin (also called connectin) is a fibrous sarcomeric protein specifically found in vertebrate striated muscle. Titin is gigantic, depending on isoform composition it ranges from 2970 to 3700 kDa, and is of a length that spans half a sarcomere. Titin largely consists of multiple repeats of Ig-like and fibronectin type 3 (FN-III)-like domains. Titin connects the ends of myosin thick filaments to Z disks and extends along the thick filament to the H zone. It appears to function similarly to an elastic band, keeping the myosin filaments centered in the sarcomere during muscle contraction or stretching. Within the sarcomere, titin is also attached to or is associated with myosin binding protein C (MyBP-C). MyBP-C appears to contribute to the generation of passive tension by titin, and similar to titin has repeated Ig-like and FN-
Probab=99.55 E-value=6.4e-14 Score=92.84 Aligned_cols=68 Identities=29% Similarity=0.467 Sum_probs=55.9
Q ss_pred cEEEEEEeecCCCCeeEEeeCCEEcCCCCeeEeceEEecccceeEEEEEcccccCCCeEEEEEEEcCCEEEEE
Q psy15667 19 AVSLKCIASGNPTPDIGWTLDGFELPTNNRFVIGQFVSGHGDVISHVNISHVTVEDGGEYACVAENRAGTCEI 91 (286)
Q Consensus 19 ~~~l~C~~~g~p~p~v~W~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~I~~~~~~D~G~Y~C~a~n~~g~~~~ 91 (286)
++.|.|.+.|.|.|.+.|+|||..+..+.++.+.. . +....|.|.++..+|+|.|+|.|.|..|....
T Consensus 1 ~~~l~c~~~G~P~p~v~W~k~g~~l~~~~~~~~~~----~-~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~~ 68 (74)
T cd05748 1 SVRLEVPISGRPTPTVTWSKDGKPLKLSGRVQIET----T-ASSTSLVIKNAERSDSGKYTLTLKNPAGEKSA 68 (74)
T ss_pred CEEEEeeEeeeCCCeEEEEECCEEcCCCCeEEEEE----C-CCeEEEEECCCCcCcCEEEEEEEECCCccEEE
Confidence 47899999999999999999999997666664421 1 12346999999999999999999999987654
No 76
>cd05732 Ig5_NCAM-1_like Fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM) and similar proteins. Ig5_NCAM-1 like: domain similar to the fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM). NCAM plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM), and heterophilic (NCAM-non-NCAM), interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves Ig1, Ig2, and Ig3. By this model, Ig1 and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM mole
Probab=99.55 E-value=1.3e-13 Score=96.36 Aligned_cols=36 Identities=33% Similarity=0.481 Sum_probs=33.6
Q ss_pred eeeEEEcccCCCCCeEEEEEEEecccceeeEEEEEE
Q psy15667 250 SSLLSINSVSAAHSGEYTCVASNTAAQARYSSKLQV 285 (286)
Q Consensus 250 ~~~L~i~~v~~~d~G~Y~C~a~N~~g~~~~~~~L~V 285 (286)
...|.|.++..+|+|.|+|.|.|.+|....++.|.|
T Consensus 61 ~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~s~~l~v 96 (96)
T cd05732 61 VSSLTLKDVQLTDAGRYDCEASNRIGGDQQSMYLEV 96 (96)
T ss_pred EEEEEECcCCcCcCEEeEEEEEeCCCCcEEEEEEeC
Confidence 468999999999999999999999999999999876
No 77
>cd05744 Ig_Myotilin_C_like Immunoglobulin (Ig)-like domain of myotilin, palladin, and myopalladin. Ig_Myotilin_like_C: immunoglobulin (Ig)-like domain in myotilin, palladin, and myopalladin. Myotilin, palladin, and myopalladin function as scaffolds that regulate actin organization. Myotilin and myopalladin are most abundant in skeletal and cardiac muscle; palladin is ubiquitously expressed in the organs of developing vertebrates and plays a key role in cellular morphogenesis. The three family members each interact with specific molecular partners: all three bind to alpha-actinin; in addition, palladin also binds to vasodilator-stimulated phosphoprotein (VASP) and ezrin, myotilin binds to filamin and actin, and myopalladin also binds to nebulin and cardiac ankyrin repeat protein (CARP).
Probab=99.55 E-value=5.4e-14 Score=93.29 Aligned_cols=69 Identities=30% Similarity=0.385 Sum_probs=54.3
Q ss_pred EEEEEEeecCCCCeeEEeeCCEEcCCC-CeeEeceEEecccceeEEEEEcccccCCCeEEEEEEEcCCEEEEEe
Q psy15667 20 VSLKCIASGNPTPDIGWTLDGFELPTN-NRFVIGQFVSGHGDVISHVNISHVTVEDGGEYACVAENRAGTCEIT 92 (286)
Q Consensus 20 ~~l~C~~~g~p~p~v~W~~~~~~l~~~-~~~~~~~~~~~~~~~~~~l~I~~~~~~D~G~Y~C~a~n~~g~~~~~ 92 (286)
+.|.|.+.|.|.|.|.|+||+..|..+ .++.+.. .+.....|.|.+++.+|+|.|+|.|.|..|....+
T Consensus 1 v~L~C~v~G~P~P~v~W~k~~~~i~~~~~r~~~~~----~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~~~ 70 (75)
T cd05744 1 VRLECRVSAIPPPQIFWKKNNEMLTYNTDRISLYQ----DNCGRICLLIQNANKEDAGWYTVSAVNEAGVVSCN 70 (75)
T ss_pred CEEEEEEeecCCCeEEEEECCEECCCCCCcEEEEE----cCCCeEEEEECCCCcccCEEEEEEEEcCCCcEEEE
Confidence 479999999999999999999998743 4543311 12222359999999999999999999999987543
No 78
>cd05723 Ig4_Neogenin Fourth immunoglobulin (Ig)-like domain in neogenin and similar proteins. Ig4_Neogenin: fourth immunoglobulin (Ig)-like domain in neogenin and related proteins. Neogenin is a cell surface protein which is expressed in the developing nervous system of vertebrate embryos in the growing nerve cells. It is also expressed in other embryonic tissues, and may play a general role in developmental processes such as cell migration, cell-cell recognition, and tissue growth regulation. Included in this group is the tumor suppressor protein DCC, which is deleted in colorectal carcinoma . DCC and neogenin each have four Ig-like domains followed by six fibronectin type III domains, a transmembrane domain, and an intracellular domain.
Probab=99.55 E-value=6.2e-14 Score=92.05 Aligned_cols=66 Identities=27% Similarity=0.568 Sum_probs=53.9
Q ss_pred cEEEEEEeecCCCCeeEEeeCCEEcCCCCeeEeceEEecccceeEEEEEcccccCCCeEEEEEEEcCCEEEEEe
Q psy15667 19 AVSLKCIASGNPTPDIGWTLDGFELPTNNRFVIGQFVSGHGDVISHVNISHVTVEDGGEYACVAENRAGTCEIT 92 (286)
Q Consensus 19 ~~~l~C~~~g~p~p~v~W~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~I~~~~~~D~G~Y~C~a~n~~g~~~~~ 92 (286)
++.|.|.+.|.|.|.++|+|++..+....++.+. ..+ .|.|.++..+|+|.|+|.|.|..|.....
T Consensus 1 ~v~l~C~~~G~P~p~v~W~k~g~~~~~~~~~~~~----~~~----~l~i~~v~~~D~G~Y~C~A~N~~G~~~~~ 66 (71)
T cd05723 1 DVIFECEVTGKPTPTVKWVKNGDMVIPSDYFKIV----KEH----NLQVLGLVKSDEGFYQCIAENDVGNVQAS 66 (71)
T ss_pred CEEEEEEEEEeCCCEEEEEECCeECCCCCCEEEE----ecC----CEEEEcCCcccCEEEEEEEEcCCCEEEEE
Confidence 4789999999999999999999988766655431 122 26788999999999999999999987643
No 79
>cd05743 Ig_Perlecan_D2_like Immunoglobulin (Ig)-like domain II (D2) of the human basement membrane heparan sulfate proteoglycan perlecan, also known as HSPG2. Ig_Perlecan_D2_like: the immunoglobulin (Ig)-like domain II (D2) of the human basement membrane heparan sulfate proteoglycan perlecan, also known as HSPG2. Perlecan consists of five domains. Domain I has three putative heparan sulfate attachment sites; domain II has four LDL receptor-like repeats, and one Ig-like repeat; domain III resembles the short arm of laminin chains; domain IV has multiple Ig-like repeats (21 repeats in human perlecan); and domain V resembles the globular G domain of the laminin A chain and internal repeats of EGF. Perlecan may participate in a variety of biological functions including cell binding, LDL-metabolism, basement membrane assembly and selective permeability, calcium binding, and growth- and neurite-promoting activities.
Probab=99.55 E-value=5.6e-14 Score=94.07 Aligned_cols=76 Identities=24% Similarity=0.301 Sum_probs=57.7
Q ss_pred CCeEEEEEeeecCCCCCeEEEEeCCeeCCCCCCceeeecCCCeeeEEEcccCCCCCeEEEEEEEecccceeeEEEEEE
Q psy15667 208 GARTRVICGVTHGDPPLTIRWLKDGKPLSPRFPVNVSDLDSFSSLLSINSVSAAHSGEYTCVASNTAAQARYSSKLQV 285 (286)
Q Consensus 208 g~~~~l~c~~~~~~p~~~~~W~~~g~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~N~~g~~~~~~~L~V 285 (286)
|+.+.|.|.+. |.|.|.+.|++++..+....++.+... .....|.|.+++.+|+|.|+|.|.|..|....++.+.+
T Consensus 1 G~~v~l~C~~~-g~P~p~v~W~~~~~~~~~~~~~~~~~~-~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~~~~~~ 76 (78)
T cd05743 1 GETVEFTCVAT-GVPTPIINWRLNWGHVPDSARVSITSE-GGYGTLTIRDVKESDQGAYTCEAINTRGMVFGIPDGIL 76 (78)
T ss_pred CCEEEEEEEEE-EecCCEEEEEECCeECCCCCCEEEEEC-CCEEEEEECCCChHHCEEEEEEEEecCCEEEecccEEE
Confidence 45667777664 677788889988887765555444332 23568999999999999999999999999887776643
No 80
>cd05864 Ig2_VEGFR-2 Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 2 (VEGFR-2). Ig2_VEGF-2: Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 2 (VEGFR-2). The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. VEGFRs bind VEGFs with high affinity at the Ig-like domains. VEGFR-2 (KDR/Flk-1) is a major mediator of the mitogenic, angiogenic and microvascular permeability-enhancing effects of VEGF-A; VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGF-A also interacts with VEGFR-1, which it binds more strongly than VEGFR-2. VEGFR-2 and -1 may mediate a chemotactic and a survival signal in hematopoietic stem cells or leukemia cells.
Probab=99.55 E-value=2.4e-14 Score=93.26 Aligned_cols=66 Identities=23% Similarity=0.432 Sum_probs=50.6
Q ss_pred EEEEeeecCCCCCeEEEEeCCeeCCCCCCceeeecCCCeeeEEEcccCCCCCeEEEEEEEecccceeeEEEEE
Q psy15667 212 RVICGVTHGDPPLTIRWLKDGKPLSPRFPVNVSDLDSFSSLLSINSVSAAHSGEYTCVASNTAAQARYSSKLQ 284 (286)
Q Consensus 212 ~l~c~~~~~~p~~~~~W~~~g~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~N~~g~~~~~~~L~ 284 (286)
.|.|.+. |.|.|.+.|+|+|..+..... +. ....|.|.++..+|+|.|+|.|.|.+|....+..++
T Consensus 2 ~~~c~v~-G~P~P~v~W~k~g~~l~~~~~--~~----~~~~L~I~~v~~~D~G~YtC~a~N~~G~~~~~~t~~ 67 (70)
T cd05864 2 KIPVKYY-GYPPPEVKWYKNGQLIVLNHT--FK----RGVHLTIYEVTEKDAGNYTVVLTNPITKEEQRHTFQ 67 (70)
T ss_pred EEEeEEE-EeCCCEEEEEECCEECCCCCE--Ec----cCCEEEECcCCHHHCEEEEEEEEECCCceeeEEEEE
Confidence 4677764 788899999999998865422 11 134799999999999999999999999655555444
No 81
>cd04968 Ig3_Contactin_like Third Ig domain of contactin. Ig3_Contactin_like: Third Ig domain of contactins. Contactins are neural cell adhesion molecules and are comprised of six Ig domains followed by four fibronectin type III(FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module via contacts between Ig domains 1 and 4, and between Ig domains 2 and 3. Contactin-2 (TAG-1, axonin-1) may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. This group also includes contactin-1 and contactin-5. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-5 is expressed specifically in the rat postnatal nervous system, peaking at about 3 week
Probab=99.54 E-value=5.7e-14 Score=96.43 Aligned_cols=76 Identities=20% Similarity=0.397 Sum_probs=56.0
Q ss_pred CCCCCeEEEEEeeecCCCCCeEEEEeCCeeCCCCCCceeeecCCCeeeEEEcccCCCCCeEEEEEEEecccceeeEEEEE
Q psy15667 205 LPEGARTRVICGVTHGDPPLTIRWLKDGKPLSPRFPVNVSDLDSFSSLLSINSVSAAHSGEYTCVASNTAAQARYSSKLQ 284 (286)
Q Consensus 205 ~~~g~~~~l~c~~~~~~p~~~~~W~~~g~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~N~~g~~~~~~~L~ 284 (286)
+.+|+.+.|.|.+. |.|.|.+.|+|++..+....... ...+.|.|.+++.+|+|.|+|.|.|..|....++.|.
T Consensus 13 ~~~g~~v~l~C~~~-g~P~p~v~W~k~~~~~~~~~~~~-----~~~~~L~i~~v~~~D~G~Y~C~a~N~~G~~~~~~~l~ 86 (88)
T cd04968 13 ALKGQNVTLECFAL-GNPVPQIKWRKVDGSMPSSAEIS-----MSGAVLKIPNIQFEDEGTYECEAENIKGKDTHQGRIY 86 (88)
T ss_pred EeCCCcEEEEEEee-EeCCCEEEEEECCCcCCCccEEE-----EeCCEEEECCCCcccCEEEEEEEEECCCcEEEEEEEE
Confidence 34566666666553 56667778888776554332211 1246899999999999999999999999999999998
Q ss_pred EC
Q psy15667 285 VK 286 (286)
Q Consensus 285 V~ 286 (286)
|.
T Consensus 87 V~ 88 (88)
T cd04968 87 VQ 88 (88)
T ss_pred EC
Confidence 84
No 82
>cd05735 Ig8_DSCAM Eight immunoglobulin (Ig) domain of Down Syndrome Cell Adhesion molecule (DSCAM). Ig8_DSCAM: the eight immunoglobulin (Ig) domain of Down Syndrome Cell Adhesion molecule (DSCAM). DSCAM is a cell adhesion molecule expressed largely in the developing nervous system. The gene encoding DSCAM is located at human chromosome 21q22, the locus associated with the mental retardation phenotype of Down Syndrome. DSCAM is predicted to be the largest member of the IG superfamily. It has been demonstrated that DSCAM can mediate cation-independent homophilic intercellular adhesion.
Probab=99.54 E-value=7.8e-14 Score=95.52 Aligned_cols=73 Identities=23% Similarity=0.396 Sum_probs=57.8
Q ss_pred CCcEEEEEEeecCCCCeeEEeeCCEEcCCC-CeeEeceEEecccceeEEEEEcccccCCCeEEEEEEEcCCEEEE
Q psy15667 17 GPAVSLKCIASGNPTPDIGWTLDGFELPTN-NRFVIGQFVSGHGDVISHVNISHVTVEDGGEYACVAENRAGTCE 90 (286)
Q Consensus 17 G~~~~l~C~~~g~p~p~v~W~~~~~~l~~~-~~~~~~~~~~~~~~~~~~l~I~~~~~~D~G~Y~C~a~n~~g~~~ 90 (286)
|+.++|.|.+.|.|++.+.|++++..+..+ .++.+.... ......+.|.|.++..+|+|.|+|.|.|..|..+
T Consensus 1 g~~~~l~C~~~g~p~~~i~W~k~~~~i~~~~~r~~~~~~~-~~~~~~s~L~I~~~~~~D~G~YtC~A~N~~G~~~ 74 (88)
T cd05735 1 GQKKEMSCTAHGEKPIIVRWEKEDRIINPEMSRYLVSTKE-VGDEVISTLQILPTVREDSGFFSCHAINSYGEDR 74 (88)
T ss_pred CCeEEEEEEEECCCCCEEEEeeCCEECCCCCCcEEEEEec-CCCcEEEEEEECCCCcccCEEEEEEEEcCCCcce
Confidence 789999999999999999999999988643 455442211 1122345699999999999999999999998765
No 83
>cd04973 Ig1_FGFR First immunoglobulin (Ig)-like domain of fibroblast growth factor receptor (FGFR). Ig1_FGFR: The first immunoglobulin (Ig)-like domain of fibroblast growth factor receptor (FGFR). Fibroblast growth factors (FGFs) participate in morphogenesis, development, angiogenesis, and wound healing. These FGF-stimulated processes are mediated by four FGFR tyrosine kinases (FGRF1-4). FGFRs are comprised of an extracellular portion consisting of three Ig-like domains, a transmembrane helix, and a cytoplasmic portion having protein tyrosine kinase activity. The highly conserved Ig-like domains 2 and 3, and the linker region between D2 and D3 define a general binding site for all FGFs.
Probab=99.54 E-value=4.2e-14 Score=94.89 Aligned_cols=75 Identities=23% Similarity=0.399 Sum_probs=61.0
Q ss_pred CCCCCCeEEEEEeeecCCCCCeEEEEeCCeeCCCCCCceeeecCCCeeeEEEcccCCCCCeEEEEEEEecccceeeEEEE
Q psy15667 204 GLPEGARTRVICGVTHGDPPLTIRWLKDGKPLSPRFPVNVSDLDSFSSLLSINSVSAAHSGEYTCVASNTAAQARYSSKL 283 (286)
Q Consensus 204 ~~~~g~~~~l~c~~~~~~p~~~~~W~~~g~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~N~~g~~~~~~~L 283 (286)
.+.+|+.+.|.|.+.. . .+.+.|+|+|..+....++.+. ...|.|.++..+|+|.|+|.|.|..|.....+.|
T Consensus 5 ~~~~G~~v~l~C~~~~-~-~~~v~W~k~g~~l~~~~~~~~~-----~~~L~I~~~~~~DsG~Y~C~a~n~~g~~~~~~~v 77 (79)
T cd04973 5 SAHPGDLLQLRCRLRD-D-VQSINWTKDGVQLGENNRTRIT-----GEEVQIKDAVPRDSGLYACVTSSPSGSDTTYFSV 77 (79)
T ss_pred EecCCCCEEEEEEecC-C-CceEEEeeCCcCCCCCceEEEe-----CCEEEECCCChhhCEEEEEEEeCCCCcccEEEEE
Confidence 3567888888888764 3 5689999999998766554432 2479999999999999999999999998888887
Q ss_pred EE
Q psy15667 284 QV 285 (286)
Q Consensus 284 ~V 285 (286)
.|
T Consensus 78 ~V 79 (79)
T cd04973 78 NV 79 (79)
T ss_pred eC
Confidence 65
No 84
>cd05749 Ig2_Tyro3_like Second immunoglobulin (Ig)-like domain of Axl/Tyro3 receptor tyrosine kinases (RTKs). Ig2_Tyro3_like: the second immunoglobulin (Ig)-like domain in the Axl/Tyro3 family of receptor tyrosine kinases (RTKs). This family includes Axl (also known as Ark, Ufo, and Tyro7), Tyro3 (also known as Sky, Rse, Brt, Dtk, and Tif), and Mer (also known as Nyk, c-Eyk, and Tyro12). Axl/Tyro3 family receptors have an extracellular portion with two Ig-like domains followed by two fibronectin-types III (FNIII) domains, a membrane-spanning single helix, and a cytoplasmic tyrosine kinase domain. Axl, Tyro3 and Mer are widely expressed in adult tissues, though they show higher expression in the brain, in the lymphatic and vascular systems, and in the testis. Axl, Tyro3, and Mer bind the vitamin K dependent protein Gas6 with high affinity, and in doing so activate their tyrosine kinase activity. Axl/Gas6 signaling may play a part in cell adhesion processes, prevention of apoptosis, and c
Probab=99.54 E-value=3.5e-14 Score=95.22 Aligned_cols=73 Identities=23% Similarity=0.407 Sum_probs=58.8
Q ss_pred eEeccccccccCCCcEEEEEEeecCCCC-eeEEeeCCEEcCCCCeeEeceEEecccceeEEEEEcccccCCCeEEEEEEE
Q psy15667 5 LTYSFIEQTLQPGPAVSLKCIASGNPTP-DIGWTLDGFELPTNNRFVIGQFVSGHGDVISHVNISHVTVEDGGEYACVAE 83 (286)
Q Consensus 5 ~~~~~~~~~~~~G~~~~l~C~~~g~p~p-~v~W~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~I~~~~~~D~G~Y~C~a~ 83 (286)
|...+.++.+.+|+++.|.|.+.|+|.| +|.|+|||.+|.. ++.. .+ ..|.|.++ .|+|.|+|.|.
T Consensus 1 f~~~P~~~~v~~G~~v~l~C~a~G~P~P~~I~W~k~g~~l~~--~~~~------~~---s~L~i~~~--~d~g~Y~C~A~ 67 (81)
T cd05749 1 FTVEPEDLSVTANTPFNLTCQAVGPPEPVEILWWQGGSPLGD--PPAP------SP---SVLNVPGL--NETSKFSCEAH 67 (81)
T ss_pred CcCCCCceEEcCCCCEEEEEEeeeecCCeEEEEEECCEECCC--CCCC------CC---CEEEEccc--cCCeEEEEEEE
Confidence 4567888999999999999999999999 7999999998854 1110 11 24778876 58999999999
Q ss_pred cCCEEEE
Q psy15667 84 NRAGTCE 90 (286)
Q Consensus 84 n~~g~~~ 90 (286)
|..|...
T Consensus 68 N~~G~~~ 74 (81)
T cd05749 68 NAKGVTT 74 (81)
T ss_pred eccCcEE
Confidence 9998664
No 85
>PF07679 I-set: Immunoglobulin I-set domain; InterPro: IPR013098 The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulphide bonds. There are two types of light chains: kappa and lambda, each composed of a constant domain (CL) and a variable domain (VL). There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are highly modular proteins, in which the variable and constant domains have clear, conserved sequence patterns. The domains in Ig and Ig-like molecules are grouped into four types: V-set (variable; IPR013106 from INTERPRO), C1-set (constant-1; IPR003597 from INTERPRO), C2-set (constant-2; IPR008424 from INTERPRO) and I-set (intermediate; IPR013098 from INTERPRO) []. Structural studies have shown that these domains share a common core Greek-key beta-sandwich structure, with the types differing in the number of strands in the beta-sheets as well as in their sequence patterns [, ]. Immunoglobulin-like domains that are related in both sequence and structure can be found in several diverse protein families. Ig-like domains are involved in a variety of functions, including cell-cell recognition, cell-surface receptors, muscle structure and the immune system []. This entry represents I-set domains, which are found in several cell adhesion molecules, including vascular (VCAM), intercellular (ICAM), neural (NCAM) and mucosal addressin (MADCAM) cell adhesion molecules, as well as junction adhesion molecules (JAM). I-set domains are also present in several other diverse protein families, including several tyrosine-protein kinase receptors, the hemolymph protein hemolin, the muscle proteins titin, telokin, and twitchin, the neuronal adhesion molecule axonin-1 [], and the signalling molecule semaphorin 4D that is involved in axonal guidance, immune function and angiogenesis [].; PDB: 3MTR_A 2EDK_A 3DMK_B 1KOA_A 3NCM_A 2NCM_A 2V9Q_A 2CR3_A 3QQN_A 3QR2_A ....
Probab=99.54 E-value=5.8e-14 Score=96.80 Aligned_cols=79 Identities=38% Similarity=0.673 Sum_probs=63.9
Q ss_pred CCCCCeEEEEEeeecCCCCCeEEEEeCCeeCCCCCCceeeecCCCeeeEEEcccCCCCCeEEEEEEEecccceeeEEEEE
Q psy15667 205 LPEGARTRVICGVTHGDPPLTIRWLKDGKPLSPRFPVNVSDLDSFSSLLSINSVSAAHSGEYTCVASNTAAQARYSSKLQ 284 (286)
Q Consensus 205 ~~~g~~~~l~c~~~~~~p~~~~~W~~~g~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~N~~g~~~~~~~L~ 284 (286)
+.+|+.+.|.|.+. +.|.+.+.|+++|..+....++.+.... ....|.|.++..+|+|.|+|.|.|..|....++.|.
T Consensus 12 v~~G~~~~l~c~~~-~~p~~~v~W~~~~~~l~~~~~~~~~~~~-~~~~L~I~~v~~~D~G~Y~C~~~n~~g~~~~~~~l~ 89 (90)
T PF07679_consen 12 VKEGESVTLECEVS-GNPPPTVTWYKNGRPLTSSQRYQIESDG-GSSSLTIKNVTREDAGTYTCVASNSSGEATASVNLT 89 (90)
T ss_dssp EETTSEEEEEEEEE-ESSSSEEEEEETTEEEESSSSEEEEEET-TEEEEEESSESGGGSEEEEEEEEETTEEEEEEEEEE
T ss_pred EeCCCEEEEEEEEE-eCCCCcccccccccceeeeeeeeeeccc-ceeEEccCCCChhhCEEEEEEEEECCCEEEEEEEEE
Confidence 44566666666654 4467788999999988877666665544 578999999999999999999999999999999998
Q ss_pred E
Q psy15667 285 V 285 (286)
Q Consensus 285 V 285 (286)
|
T Consensus 90 V 90 (90)
T PF07679_consen 90 V 90 (90)
T ss_dssp E
T ss_pred C
Confidence 7
No 86
>cd05747 Ig5_Titin_like M5, fifth immunoglobulin (Ig)-like domain of human titin C terminus and similar proteins. Ig5_Titin_like: domain similar to the M5, fifth immunoglobulin (Ig)-like domain from the human titin C terminus. Titin (also called connectin) is a fibrous sarcomeric protein specifically found in vertebrate striated muscle. Titin is gigantic; depending on isoform composition it ranges from 2970 to 3700 kDa, and is of a length that spans half a sarcomere. Titin largely consists of multiple repeats of Ig-like and fibronectin type 3 (FN-III)-like domains. Titin connects the ends of myosin thick filaments to Z disks and extends along the thick filament to the H zone, and appears to function similar to an elastic band, keeping the myosin filaments centered in the sarcomere during muscle contraction or stretching.
Probab=99.54 E-value=7.9e-14 Score=96.53 Aligned_cols=78 Identities=24% Similarity=0.541 Sum_probs=60.6
Q ss_pred CCCCCeEEEEEeeecCCCCCeEEEEeCCeeCCCCCCceeeecCCCeeeEEEcccCCCCCeEEEEEEEecccceeeEEEEE
Q psy15667 205 LPEGARTRVICGVTHGDPPLTIRWLKDGKPLSPRFPVNVSDLDSFSSLLSINSVSAAHSGEYTCVASNTAAQARYSSKLQ 284 (286)
Q Consensus 205 ~~~g~~~~l~c~~~~~~p~~~~~W~~~g~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~N~~g~~~~~~~L~ 284 (286)
+.+|+.+.|.|.+. |.|.|.+.|+|+|..+....++.+... .....|.|.++..+|+|.|+|.|.|.+|....++.|+
T Consensus 15 ~~~G~~~~L~C~~~-g~P~p~v~W~k~g~~l~~~~~~~~~~~-~~~~~L~i~~~~~~D~G~Y~C~a~N~~G~~~~~~~l~ 92 (92)
T cd05747 15 VSEGESARFSCDVD-GEPAPTVTWMREGQIIVSSQRHQITST-EYKSTFEISKVQMSDEGNYTVVVENSEGKQEAQFTLT 92 (92)
T ss_pred EeCCCcEEEEEEEe-ecCCCEEEEEECCEECCCCCcEEEEEc-CCeeEEEECCCCcccCEeEEEEEEcCCCCEeEEEEeC
Confidence 55666666666554 677788899999988876655554432 2356899999999999999999999999998888773
No 87
>cd05730 Ig3_NCAM-1_like Third immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM). Ig3_NCAM-1_like: domain similar to the third immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM). NCAM plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM), and heterophilic (NCAM-non-NCAM), interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves Ig1, Ig2, and Ig3. By this model, Ig1,and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM molecules expressed on the
Probab=99.54 E-value=5e-14 Score=98.17 Aligned_cols=77 Identities=29% Similarity=0.480 Sum_probs=58.8
Q ss_pred CCCCCeEEEEEeeecCCCCCeEEEEeCCeeCCCC-CCceeeecCCCeeeEEEcccCCCCCeEEEEEEEecccceeeEEEE
Q psy15667 205 LPEGARTRVICGVTHGDPPLTIRWLKDGKPLSPR-FPVNVSDLDSFSSLLSINSVSAAHSGEYTCVASNTAAQARYSSKL 283 (286)
Q Consensus 205 ~~~g~~~~l~c~~~~~~p~~~~~W~~~g~~~~~~-~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~N~~g~~~~~~~L 283 (286)
+..|+.+.|.|.+. |.|.|.+.|+|+|..+... .++.+. .....|.|.+++.+|+|.|+|.|.|.+|....++.|
T Consensus 15 ~~~G~~v~L~C~~~-g~P~p~v~W~k~g~~~~~~~~~~~~~---~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~~~L 90 (95)
T cd05730 15 ANLGQSVTLACDAD-GFPEPTMTWTKDGEPIESGEEKYSFN---EDGSEMTILDVDKLDEAEYTCIAENKAGEQEAEIHL 90 (95)
T ss_pred EeCCCCEEEEEecc-EeCCCEEEEEECCEECcCCCCEEEEe---CCCCEEEECCCChhhCEEEEEEEEcCCCeEEEEEEE
Confidence 45566666666653 5677888899998887554 222221 224579999999999999999999999999999999
Q ss_pred EE
Q psy15667 284 QV 285 (286)
Q Consensus 284 ~V 285 (286)
.|
T Consensus 91 ~V 92 (95)
T cd05730 91 KV 92 (95)
T ss_pred EE
Confidence 87
No 88
>cd04969 Ig5_Contactin_like Fifth Ig domain of contactin. Ig5_Contactin_like: Fifth Ig domain of contactins. Contactins are neural cell adhesion molecules and are comprised of six Ig domains followed by four fibronectin type III(FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module via contacts between Ig domains 1 and 4, and between Ig domains 2 and 3. Contactin-2 (TAG-1, axonin-1) may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. This group also includes contactin-1 and contactin-5. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-5 is expressed specifically in the rat postnatal nervous system, peaking at about 3 week
Probab=99.54 E-value=5.1e-14 Score=93.05 Aligned_cols=68 Identities=34% Similarity=0.580 Sum_probs=57.4
Q ss_pred CCcEEEEEEeecCCCCeeEEeeCCEEcCCCCeeEeceEEecccceeEEEEEcccccCCCeEEEEEEEcCCEEEEEe
Q psy15667 17 GPAVSLKCIASGNPTPDIGWTLDGFELPTNNRFVIGQFVSGHGDVISHVNISHVTVEDGGEYACVAENRAGTCEIT 92 (286)
Q Consensus 17 G~~~~l~C~~~g~p~p~v~W~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~I~~~~~~D~G~Y~C~a~n~~g~~~~~ 92 (286)
|+.+.|.|.+.|.|.|.++|+|++..+..+.++.+. ..+ .|.|.++..+|+|.|+|.|.|..|..+.+
T Consensus 1 G~~v~L~C~~~g~P~p~v~W~k~~~~~~~~~~~~~~----~~~----~L~i~~v~~~D~G~Y~C~a~N~~G~~~~~ 68 (73)
T cd04969 1 GGDVIIECKPKAAPKPTISWSKGTELLTNSSRICIW----PDG----SLEILNVTKSDEGKYTCFAENFFGKANST 68 (73)
T ss_pred CCeEEEEEeeeEcCCCEEEEEECCEEcccCCCEEEC----CCC----eEEEccCChhHCEEEEEEEECCCCceEEE
Confidence 789999999999999999999999998776666431 122 48899999999999999999999876543
No 89
>cd05760 Ig2_PTK7 Second immunoglobulin (Ig)-like domain of protein tyrosine kinase (PTK) 7, also known as CCK4. Ig2_PTK7: domain similar to the second immunoglobulin (Ig)-like domain in protein tyrosine kinase (PTK) 7, also known as CCK4. PTK7 is a subfamily of the receptor protein tyrosine kinase family, and is referred to as an RPTK-like molecule. RPTKs transduce extracellular signals across the cell membrane, and play important roles in regulating cell proliferation, migration, and differentiation. PTK7 is organized as an extracellular portion having seven Ig-like domains, a single transmembrane region, and a cytoplasmic tyrosine kinase-like domain. PTK7 is considered a pseudokinase as it has several unusual residues in some of the highly conserved tyrosine kinase (TK) motifs; it is predicted to lack TK activity. PTK7 may function as a cell-adhesion molecule. PTK7 mRNA is expressed at high levels in placenta, melanocytes, liver, lung, pancreas, and kidney. PTK7 is overexpressed in s
Probab=99.54 E-value=5.5e-14 Score=93.82 Aligned_cols=70 Identities=30% Similarity=0.523 Sum_probs=52.5
Q ss_pred EEEEeeecCCCCCeEEEEeCCeeCCCCCC-ceeeecCCCeeeEEEcccCCCCCeEEEEEEEecccceeeEEEEEE
Q psy15667 212 RVICGVTHGDPPLTIRWLKDGKPLSPRFP-VNVSDLDSFSSLLSINSVSAAHSGEYTCVASNTAAQARYSSKLQV 285 (286)
Q Consensus 212 ~l~c~~~~~~p~~~~~W~~~g~~~~~~~~-~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~N~~g~~~~~~~L~V 285 (286)
.|.|.+. |.|.|.+.|+|+|..+..... +.+.. ....|.|.++.++|+|.|+|.|.|.+|....++.++|
T Consensus 2 ~L~C~~~-g~P~p~v~W~k~g~~l~~~~~~~~~~~---~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~s~~~~~l 72 (77)
T cd05760 2 TLRCHID-GHPRPTYQWFRDGTPLSDGQGNYSVSS---KERTLTLRSAGPDDSGLYYCCAHNAFGSVCSSQNFTL 72 (77)
T ss_pred EEEEEee-ecCCCcEEEEECCEECCCCCccEEEeC---CCCEEEEeeCCcccCEEEEEEEEeCCCeEeeCceEEE
Confidence 5777664 778889999999998865432 22221 2357999999999999999999999998765555443
No 90
>cd04974 Ig3_FGFR Third immunoglobulin (Ig)-like domain of fibroblast growth factor receptor (FGFR). Ig3_FGFR: third immunoglobulin (Ig)-like domain of fibroblast growth factor receptor (FGFR). Fibroblast growth factors (FGFs) participate in morphogenesis, development, angiogenesis, and wound healing. These FGF-stimulated processes are mediated by four FGFR tyrosine kinases (FGRF1-4). FGFRs are comprised of an extracellular portion consisting of three Ig-like domains, a transmembrane helix, and a cytoplasmic portion having protein tyrosine kinase activity. The highly conserved Ig-like domains 2 and 3, and the linker region between D2 and D3 define a general binding site for FGFs.
Probab=99.53 E-value=6.3e-14 Score=96.54 Aligned_cols=36 Identities=36% Similarity=0.543 Sum_probs=34.1
Q ss_pred eeEEEcccCCCCCeEEEEEEEecccceeeEEEEEEC
Q psy15667 251 SLLSINSVSAAHSGEYTCVASNTAAQARYSSKLQVK 286 (286)
Q Consensus 251 ~~L~i~~v~~~d~G~Y~C~a~N~~g~~~~~~~L~V~ 286 (286)
..|.|.+++.+|+|.|+|.|.|..|....++.|.|+
T Consensus 55 ~~L~I~~v~~~D~G~Y~C~A~N~~G~~~~sa~L~V~ 90 (90)
T cd04974 55 EVLYLRNVSFDDAGEYTCLAGNSIGPSHHSAWLTVL 90 (90)
T ss_pred ceEEEeccccccCcEEEEEeecccCcccCCEEEEeC
Confidence 478999999999999999999999999999999985
No 91
>cd05738 Ig2_RPTP_IIa_LAR_like Second immunoglobulin (Ig)-like domain of the receptor protein tyrosine phosphatase (RPTP)-F, also known as LAR. Ig2_RPTP_IIa_LAR_like: domain similar to the second immunoglobulin (Ig)-like domain found in the receptor protein tyrosine phosphatase (RPTP)-F, also known as LAR. LAR belongs to the RPTP type IIa subfamily. Members of this subfamily are cell adhesion molecule-like proteins involved in central nervous system (CNS) development. They have large extracellular portions, comprised of multiple Ig-like domains and two to nine fibronectin type III (FNIII) domains, and a cytoplasmic portion having two tandem phosphatase domains.
Probab=99.53 E-value=6.8e-14 Score=92.65 Aligned_cols=72 Identities=29% Similarity=0.559 Sum_probs=54.5
Q ss_pred EEEEeeecCCCCCeEEEEeCCeeCCCCCCceeeecCCCeeeEEEcccCCCCCeEEEEEEEecccc-eeeEEEEEEC
Q psy15667 212 RVICGVTHGDPPLTIRWLKDGKPLSPRFPVNVSDLDSFSSLLSINSVSAAHSGEYTCVASNTAAQ-ARYSSKLQVK 286 (286)
Q Consensus 212 ~l~c~~~~~~p~~~~~W~~~g~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~N~~g~-~~~~~~L~V~ 286 (286)
.|.|.+. |.|.|.+.|+|++..+.......+... .++.|.|.+++.+|+|.|+|.|.|..|. .+..+.|.|+
T Consensus 2 ~l~C~~~-G~P~p~v~W~k~~~~~~~~~~~~~~~~--~~g~L~i~~~~~~D~G~Y~C~a~N~~G~~~s~~a~l~v~ 74 (74)
T cd05738 2 TMLCAAS-GNPDPEITWFKDFLPVDTTSNGRIKQL--RSGALQIENSEESDQGKYECVATNSAGTRYSAPANLYVR 74 (74)
T ss_pred EEEEEEe-EecCCEEEEEECCEECccCCCCCEEEc--CCcEEEECCCChhhCEEEEEEEECCCCceEcccEEEEEC
Confidence 5677653 778888999999987753222222221 2457999999999999999999999997 4788889886
No 92
>cd05725 Ig3_Robo Third immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Ig3_Robo: domain similar to the third immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit responsiveness, antagoni
Probab=99.53 E-value=5.6e-14 Score=91.79 Aligned_cols=68 Identities=32% Similarity=0.514 Sum_probs=54.4
Q ss_pred EEEEeeecCCCCCeEEEEeCCeeCCCCCCceeeecCCCeeeEEEcccCCCCCeEEEEEEEecccceeeEEEEEE
Q psy15667 212 RVICGVTHGDPPLTIRWLKDGKPLSPRFPVNVSDLDSFSSLLSINSVSAAHSGEYTCVASNTAAQARYSSKLQV 285 (286)
Q Consensus 212 ~l~c~~~~~~p~~~~~W~~~g~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~N~~g~~~~~~~L~V 285 (286)
.|.|.+. |.|+|.+.|+|++..+... ++.+. ....|.|.++..+|+|.|+|.|.|.+|....++.|.|
T Consensus 2 ~l~C~~~-g~P~p~v~W~k~~~~~~~~-~~~~~----~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~~~l~V 69 (69)
T cd05725 2 EFQCEVG-GDPVPTVLWRKEDGELPKG-RAEIL----DDKSLKIRNVTAGDEGSYTCEAENMVGKIEASASLTV 69 (69)
T ss_pred EEEEECc-cCCCCEEEEEECCccCCCC-cEEEe----eCCEEEECcCChhHCEEEEEEEEcCCCcEEEEEEEEC
Confidence 5778764 7788899999998766432 33322 1457999999999999999999999999999999876
No 93
>cd05764 Ig_2 Subgroup of the immunoglobulin (Ig) superfamily. Ig_2: subgroup of the immunoglobulin (Ig) domain found in the Ig superfamily. The Ig superfamily is a heterogenous group of proteins, built on a common fold comprised of a sandwich of two beta sheets. Members of the Ig superfamily are components of immunoglobulin, neuroglia, cell surface glycoproteins, such as T-cell receptors, CD2, CD4, CD8, and membrane glycoproteins, such as butyrophilin and chondroitin sulfate proteoglycan core protein. A predominant feature of most Ig domains is a disulfide bridge connecting the two beta-sheets with a tryptophan residue packed against the disulfide bond.
Probab=99.53 E-value=8.6e-14 Score=92.25 Aligned_cols=73 Identities=34% Similarity=0.615 Sum_probs=56.6
Q ss_pred CCeEEEEEeeecCCCCCeEEEEe-CCeeCCCCCCceeeecCCCeeeEEEcccCCCCCeEEEEEEEecccceeeEEEEEE
Q psy15667 208 GARTRVICGVTHGDPPLTIRWLK-DGKPLSPRFPVNVSDLDSFSSLLSINSVSAAHSGEYTCVASNTAAQARYSSKLQV 285 (286)
Q Consensus 208 g~~~~l~c~~~~~~p~~~~~W~~-~g~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~N~~g~~~~~~~L~V 285 (286)
|+.+.|.|.+. |.|.|.+.|++ ++..+....+..+.. .+.|.|..+..+|+|.|+|.|.|..|..+.++.|.|
T Consensus 1 G~~~~l~C~~~-g~P~p~v~W~~~~~~~~~~~~~~~~~~----~~~L~i~~~~~~D~G~Y~C~a~N~~G~~~~~~~l~v 74 (74)
T cd05764 1 GQRATLRCKAR-GDPEPAIHWISPDGKLISNSSRTLVYD----NGTLDILITTVKDTGSFTCIASNAAGEATATVELHI 74 (74)
T ss_pred CCeEEEEEEcc-CcCCCEEEEEeCCCEEecCCCeEEEec----CCEEEEEECChhhCEEEEEEEECCCCeEEEEEEEEC
Confidence 56778888764 77888999986 566654443332211 357999999999999999999999999999998876
No 94
>cd05857 Ig2_FGFR Second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor. Ig2_FGFR: second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor. FGF receptors bind FGF signaling polypeptides. FGFs participate in multiple processes such as morphogenesis, development, and angiogenesis. FGFs bind to four FGF receptor tyrosine kinases (FGFR1, -2, -3, -4). Receptor diversity is controlled by alternative splicing producing splice variants with different ligand binding characteristics and different expression patterns. FGFRs have an extracellular region comprised of three IG-like domains, a single transmembrane helix, and an intracellular tyrosine kinase domain. Ligand binding and specificity reside in the Ig-like domains 2 and 3, and the linker region that connects these two. FGFR activation and signaling depend on FGF-induced dimerization, a process involving cell surface heparin or heparin sulfate proteoglycans.
Probab=99.53 E-value=9.3e-14 Score=94.73 Aligned_cols=76 Identities=29% Similarity=0.537 Sum_probs=60.1
Q ss_pred ccccCCCcEEEEEEeecCCCCeeEEeeCCEEcCCCCeeEeceEEecccceeEEEEEcccccCCCeEEEEEEEcCCEEEEE
Q psy15667 12 QTLQPGPAVSLKCIASGNPTPDIGWTLDGFELPTNNRFVIGQFVSGHGDVISHVNISHVTVEDGGEYACVAENRAGTCEI 91 (286)
Q Consensus 12 ~~~~~G~~~~l~C~~~g~p~p~v~W~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~I~~~~~~D~G~Y~C~a~n~~g~~~~ 91 (286)
+.+.+|+.+.|.|.+.|.|.|.+.|+|||..+..+.+..... .. ... ..|.|.++..+|+|.|+|.|.|..|..+.
T Consensus 4 ~~v~~G~~~~L~C~~~g~P~p~i~W~k~g~~l~~~~~~~~~~-~~-~~~--~~l~i~~~~~~D~G~Y~C~a~N~~G~~~~ 79 (85)
T cd05857 4 HAVPAANTVKFRCPAAGNPTPTMRWLKNGKEFKQEHRIGGYK-VR-NQH--WSLIMESVVPSDKGNYTCVVENEYGSINH 79 (85)
T ss_pred EEcCCCCEEEEEEEcCCCCCCEEEEEECCEECCCCCceeeeE-Ee-CCc--eEEEEccCCcccCEEEEEEEEeCCCEEEE
Confidence 468899999999999999999999999999987654431101 01 111 24889999999999999999999998654
No 95
>cd04973 Ig1_FGFR First immunoglobulin (Ig)-like domain of fibroblast growth factor receptor (FGFR). Ig1_FGFR: The first immunoglobulin (Ig)-like domain of fibroblast growth factor receptor (FGFR). Fibroblast growth factors (FGFs) participate in morphogenesis, development, angiogenesis, and wound healing. These FGF-stimulated processes are mediated by four FGFR tyrosine kinases (FGRF1-4). FGFRs are comprised of an extracellular portion consisting of three Ig-like domains, a transmembrane helix, and a cytoplasmic portion having protein tyrosine kinase activity. The highly conserved Ig-like domains 2 and 3, and the linker region between D2 and D3 define a general binding site for all FGFs.
Probab=99.53 E-value=5.1e-14 Score=94.46 Aligned_cols=71 Identities=34% Similarity=0.619 Sum_probs=59.1
Q ss_pred ccccccCCCcEEEEEEeecCCCCeeEEeeCCEEcCCCCeeEeceEEecccceeEEEEEcccccCCCeEEEEEEEcCCEEE
Q psy15667 10 IEQTLQPGPAVSLKCIASGNPTPDIGWTLDGFELPTNNRFVIGQFVSGHGDVISHVNISHVTVEDGGEYACVAENRAGTC 89 (286)
Q Consensus 10 ~~~~~~~G~~~~l~C~~~g~p~p~v~W~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~I~~~~~~D~G~Y~C~a~n~~g~~ 89 (286)
.+..+.+|+.++|.|.+.++ .+.+.|+|||.+|..+.++.+. ++ .|.|.+++.+|+|.|+|.|.|..|..
T Consensus 2 ~~~~~~~G~~v~l~C~~~~~-~~~v~W~k~g~~l~~~~~~~~~------~~---~L~I~~~~~~DsG~Y~C~a~n~~g~~ 71 (79)
T cd04973 2 ESYSAHPGDLLQLRCRLRDD-VQSINWTKDGVQLGENNRTRIT------GE---EVQIKDAVPRDSGLYACVTSSPSGSD 71 (79)
T ss_pred CcEEecCCCCEEEEEEecCC-CceEEEeeCCcCCCCCceEEEe------CC---EEEECCCChhhCEEEEEEEeCCCCcc
Confidence 45678999999999999997 5689999999999877666431 22 48899999999999999999987764
Q ss_pred E
Q psy15667 90 E 90 (286)
Q Consensus 90 ~ 90 (286)
.
T Consensus 72 ~ 72 (79)
T cd04973 72 T 72 (79)
T ss_pred c
Confidence 3
No 96
>cd05868 Ig4_NrCAM Fourth immunoglobulin (Ig)-like domain of NrCAM (NgCAM-related cell adhesion molecule). Ig4_ NrCAM: fourth immunoglobulin (Ig)-like domain of NrCAM (NgCAM-related cell adhesion molecule). NrCAM belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six IG-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. NrCAM is primarily expressed in the nervous system.
Probab=99.53 E-value=8.3e-14 Score=92.68 Aligned_cols=70 Identities=29% Similarity=0.467 Sum_probs=54.6
Q ss_pred CCcEEEEEEeecCCCCeeEEeeCCEEcCCCCeeEeceEEecccceeEEEEEcccccCCCeEEEEEEEcCCEEEEEe
Q psy15667 17 GPAVSLKCIASGNPTPDIGWTLDGFELPTNNRFVIGQFVSGHGDVISHVNISHVTVEDGGEYACVAENRAGTCEIT 92 (286)
Q Consensus 17 G~~~~l~C~~~g~p~p~v~W~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~I~~~~~~D~G~Y~C~a~n~~g~~~~~ 92 (286)
|+.++|.|.+.|+|.|+|+|+|||.+|........ . ...+. .|.|.+++.+|+|.|+|.|.|..|....+
T Consensus 1 g~~~~l~C~a~G~P~P~i~W~k~g~~i~~~~~~~~-~--~~~~~---~l~i~~v~~~D~G~Y~C~A~N~~G~~~~~ 70 (76)
T cd05868 1 GEDGTLICRANGNPKPSISWLTNGVPIEIAPTDPS-R--KVDGD---TIIFSKVQERSSAVYQCNASNEYGYLLAN 70 (76)
T ss_pred CCCEEEEEEeeEeCCCeEEEEECCEEccccCCCce-E--EecCC---EEEECCCCHhhCEEEEEEEEcCCCEEEEE
Confidence 78999999999999999999999999853221110 0 11222 37899999999999999999999987543
No 97
>cd05736 Ig2_Follistatin_like Second immunoglobulin (Ig)-like domain of a follistatin-like molecule encoded by the Mahya gene and similar proteins. Ig2_Follistatin_like: domain similar to the second immunoglobulin (Ig)-like domain found in a follistatin-like molecule encoded by the CNS-related Mahya gene. Mahya genes have been retained in certain Bilaterian branches during evolution. They are conserved in Hymenoptera and Deuterostomes, but are absent from other metazoan species such as fruit fly and nematode. Mahya proteins are secretory, with a follistatin-like domain (Kazal-type serine/threonine protease inhibitor domain and EF-hand calcium-binding domain), two Ig-like domains, and a novel C-terminal domain. Mahya may be involved in learning and memory and in processing of sensory information in Hymenoptera and vertebrates. Follistatin is a secreted, multidomain protein that binds activins with high affinity and antagonizes their signaling.
Probab=99.53 E-value=9.5e-14 Score=92.53 Aligned_cols=73 Identities=30% Similarity=0.535 Sum_probs=58.5
Q ss_pred EEEEeeecCCCCCeEEEEeCCeeCCCCCCceeeecCCCeeeEEEcccCCCCCeEEEEEEEecccceeeEEEEEEC
Q psy15667 212 RVICGVTHGDPPLTIRWLKDGKPLSPRFPVNVSDLDSFSSLLSINSVSAAHSGEYTCVASNTAAQARYSSKLQVK 286 (286)
Q Consensus 212 ~l~c~~~~~~p~~~~~W~~~g~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~N~~g~~~~~~~L~V~ 286 (286)
.|.|.+. |.|+|.+.|+|++..+......++... .....|.|.++..+|+|.|+|.|.|..|....++.|.|+
T Consensus 2 ~L~C~v~-g~P~p~v~W~k~~~~l~~~~~~~~~~~-~~~~~l~I~~~~~~D~G~Y~C~a~N~~G~~~~~~~l~V~ 74 (76)
T cd05736 2 SLRCHAE-GIPLPRLTWLKNGMDITPKLSKQLTLI-ANGSELHISNVRYEDTGAYTCIAKNEAGVDEDISSLFVE 74 (76)
T ss_pred EeEeEee-ecCCCEEEEEECCEECCCCCCccEEEe-CCCCEEEECcCCcccCEEEEEEEEcCCCCcceEEEEEEE
Confidence 5777765 678889999999998865544333332 223579999999999999999999999999999999885
No 98
>cd05739 Ig3_RPTP_IIa_LAR_like Third immunoglobulin (Ig)-like domain of the receptor protein tyrosine phosphatase (RPTP)-F, also known as LAR. Ig3_RPTP_IIa_LAR_like: domain similar to the third immunoglobulin (Ig)-like domain found in the receptor protein tyrosine phosphatase (RPTP)-F, also known as LAR. LAR belongs to the RPTP type IIa subfamily. Members of this subfamily are cell adhesion molecule-like proteins involved in central nervous system (CNS) development. They have large extracellular portions, comprised of multiple IG-like domains and two to nine fibronectin type III (FNIII) domains, and a cytoplasmic portion having two tandem phosphatase domains. Included in this group is Drosophila LAR (DLAR).
Probab=99.53 E-value=9.9e-14 Score=90.32 Aligned_cols=69 Identities=22% Similarity=0.464 Sum_probs=52.2
Q ss_pred CCeEEEEEeeecCCCCCeEEEEeCCeeCCCCCCceeeecCCCeeeEEEcccCCCCCeEEEEEEEecccceeeEEEEE
Q psy15667 208 GARTRVICGVTHGDPPLTIRWLKDGKPLSPRFPVNVSDLDSFSSLLSINSVSAAHSGEYTCVASNTAAQARYSSKLQ 284 (286)
Q Consensus 208 g~~~~l~c~~~~~~p~~~~~W~~~g~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~N~~g~~~~~~~L~ 284 (286)
|+.+.|.|.+. |.|.|.+.|+|++..+....+.. . ....|.|.++ .|+|.|+|.|.|.+|....++.|+
T Consensus 1 G~~v~L~C~a~-G~P~P~v~W~k~g~~l~~~~~~~--~---~~~~L~i~~~--~d~G~Y~C~A~N~~G~~~~~a~l~ 69 (69)
T cd05739 1 GGSVNLTCVAV-GAPMPYVKWMKGGEELTKEDEMP--V---GRNVLELTNI--YESANYTCVAISSLGMIEATAQVT 69 (69)
T ss_pred CCeEEEEEEee-ecCCCEEEEEECCEECCCcccee--c---CccEEEEecc--ccCeeEEEEEEeCCCEEEEEEEEC
Confidence 45677777664 77888999999998875443221 1 1346888887 489999999999999999988874
No 99
>cd05863 Ig2_VEGFR-3 Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 3 (VEGFR-3). Ig2_VEGFR-3: Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 3 (VEGFR-3). The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. VEGFRs bind VEGFs with high affinity at the Ig-like domains. VEGFR-3 (Flt-4) binds two members of the VEGF family (VEGF-C and -D) and is involved in tumor angiogenesis and growth.
Probab=99.52 E-value=3.2e-14 Score=91.55 Aligned_cols=57 Identities=26% Similarity=0.400 Sum_probs=48.2
Q ss_pred EEEEEEeecCCCCeeEEeeCCEEcCCCCeeEeceEEecccceeEEEEEcccccCCCeEEEEEEEcCCEEE
Q psy15667 20 VSLKCIASGNPTPDIGWTLDGFELPTNNRFVIGQFVSGHGDVISHVNISHVTVEDGGEYACVAENRAGTC 89 (286)
Q Consensus 20 ~~l~C~~~g~p~p~v~W~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~I~~~~~~D~G~Y~C~a~n~~g~~ 89 (286)
+.|.|.+.|.|+|.++|+|||++|.... .+ ..|.|.++..+|+|.|+|.|.|..|..
T Consensus 1 ~~l~c~v~g~P~P~v~W~kdg~~l~~~~----------~~---~~L~i~~v~~~D~G~YtC~a~N~~g~~ 57 (67)
T cd05863 1 VKLPVKVAAYPPPEFQWYKDGKLISGKH----------SQ---HSLQIKDVTEASAGTYTLVLWNSAAGL 57 (67)
T ss_pred CEEEEEEEEeCCCEEEEEECCEECcccC----------Cc---CEEEECCCCHHHCEEEEEEEEECCccE
Confidence 4799999999999999999999985321 11 248899999999999999999998854
No 100
>cd05870 Ig5_NCAM-2 Fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-2 (also known as OCAM/mamFas II and RNCAM). Ig5_NCAM-2: the fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-2 (also known as OCAM/mamFas II and RNCAM). NCAM-2 is organized similarly to NCAM , including five N-terminal Ig-like domains and two fibronectin type III domains. NCAM-2 is differentially expressed in the developing and mature olfactory epithelium (OE), and may function like NCAM, as an adhesion molecule.
Probab=99.52 E-value=2e-13 Score=95.63 Aligned_cols=36 Identities=31% Similarity=0.445 Sum_probs=33.4
Q ss_pred eeeEEEcccCCCCCeEEEEEEEecccceeeEEEEEE
Q psy15667 250 SSLLSINSVSAAHSGEYTCVASNTAAQARYSSKLQV 285 (286)
Q Consensus 250 ~~~L~i~~v~~~d~G~Y~C~a~N~~g~~~~~~~L~V 285 (286)
...|.|.+++.+|+|.|+|.|.|.+|....++.|.|
T Consensus 63 ~~~L~I~~v~~~D~G~Y~C~A~N~~G~~~~~~~l~~ 98 (98)
T cd05870 63 ESSLHIKDVKLSDSGRYDCEAASRIGGHQKSMYLDI 98 (98)
T ss_pred eeEEEEeeCCcCCCEEEEEEEeccCCcceeEEEEeC
Confidence 457999999999999999999999999999998875
No 101
>cd05746 Ig4_Peroxidasin Fourth immunoglobulin (Ig)-like domain of peroxidasin. Ig4_Peroxidasin: the fourth immunoglobulin (Ig)-like domain in peroxidasin. Peroxidasin has a peroxidase domain and interacting extracellular motifs containing four Ig-like domains. It has been suggested that peroxidasin is secreted, and has functions related to the stabilization of the extracellular matrix. It may play a part in various other important processes such as removal and destruction of cells, which have undergone programmed cell death, and protection of the organism against non-self.
Probab=99.52 E-value=4.7e-14 Score=92.10 Aligned_cols=64 Identities=36% Similarity=0.745 Sum_probs=53.9
Q ss_pred EEEEEEeecCCCCeeEEeeCCEEcCCCCeeEeceEEecccceeEEEEEcccccCCCeEEEEEEEcCCEEEEE
Q psy15667 20 VSLKCIASGNPTPDIGWTLDGFELPTNNRFVIGQFVSGHGDVISHVNISHVTVEDGGEYACVAENRAGTCEI 91 (286)
Q Consensus 20 ~~l~C~~~g~p~p~v~W~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~I~~~~~~D~G~Y~C~a~n~~g~~~~ 91 (286)
|.|.|.+.|.|.|.+.|+|||..+..+.++.+.. . ..|.|.++..+|+|.|+|.|.|..|....
T Consensus 1 v~L~C~~~g~P~p~i~W~k~g~~~~~~~~~~~~~----~----~~L~I~~~~~~D~G~Y~C~a~N~~G~~~~ 64 (69)
T cd05746 1 VQIPCSAQGDPEPTITWNKDGVQVTESGKFHISP----E----GYLAIRDVGVADQGRYECVARNTIGYASV 64 (69)
T ss_pred CEeEecceEeCCCEEEEEECCEECCCCCCEEECC----C----CEEEECcCChhhCEEEEEEEECCCCcEEE
Confidence 5799999999999999999999987766665421 1 14899999999999999999999987654
No 102
>cd05726 Ig4_Robo Fhird immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Ig4_Robo: domain similar to the fhird immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit responsiveness, antagoni
Probab=99.52 E-value=9.3e-14 Score=95.74 Aligned_cols=74 Identities=27% Similarity=0.416 Sum_probs=53.3
Q ss_pred CCeEEEEEeeecCCCCCeEEEEeCCeeCC--------CCCCceeeecCCCeeeEEEcccCCCCCeEEEEEEEecccceee
Q psy15667 208 GARTRVICGVTHGDPPLTIRWLKDGKPLS--------PRFPVNVSDLDSFSSLLSINSVSAAHSGEYTCVASNTAAQARY 279 (286)
Q Consensus 208 g~~~~l~c~~~~~~p~~~~~W~~~g~~~~--------~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~N~~g~~~~ 279 (286)
|+.+.|.|.+ .|.|.|.+.|+|+|..+. ...++.+. ..+.|.|.+++.+|+|.|+|.|.|.+|....
T Consensus 1 G~~v~L~C~~-~g~P~p~v~W~k~g~~~~~~~~~~~~~~~r~~v~----~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~ 75 (90)
T cd05726 1 GRTVTFQCEA-TGNPQPAIFWQKEGSQNLLFSYQPPQSSSRFSVS----QTGDLTITNVQRSDVGYYICQTLNVAGSILT 75 (90)
T ss_pred CCEEEEEEEC-CccCCCEEEEEeCCCcceeecccCCCCCCeEEEC----CCCeEEEeeCChhhCEEEEEEEEcCCCceEE
Confidence 4556666665 356677777777765321 11222221 1347999999999999999999999999999
Q ss_pred EEEEEEC
Q psy15667 280 SSKLQVK 286 (286)
Q Consensus 280 ~~~L~V~ 286 (286)
.+.|.|+
T Consensus 76 ~~~l~V~ 82 (90)
T cd05726 76 KAYLEVT 82 (90)
T ss_pred EEEEEEe
Confidence 9999884
No 103
>cd04977 Ig1_NCAM-1_like First immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-1 and similar proteins. Ig1_NCAM-1 like: first immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-1. NCAM-1 plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM), and heterophilic (NCAM-nonNCAM), interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves the Ig1, Ig2, and Ig3 domains. By this model, Ig1 and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM molecules expressed on the s
Probab=99.51 E-value=1.3e-13 Score=95.23 Aligned_cols=79 Identities=29% Similarity=0.504 Sum_probs=61.1
Q ss_pred eEeccccccccCCCcEEEEEEeecCCCCeeEEee-CCEEcCCCCeeEeceEEecccceeEEEEEcccccCCCeEEEEEEE
Q psy15667 5 LTYSFIEQTLQPGPAVSLKCIASGNPTPDIGWTL-DGFELPTNNRFVIGQFVSGHGDVISHVNISHVTVEDGGEYACVAE 83 (286)
Q Consensus 5 ~~~~~~~~~~~~G~~~~l~C~~~g~p~p~v~W~~-~~~~l~~~~~~~~~~~~~~~~~~~~~l~I~~~~~~D~G~Y~C~a~ 83 (286)
+.+.+.+..+..|+++.|.|.+.|.|. .+.|++ ++..+....++... ..+.....|+|.+++.+|+|.|+|.|.
T Consensus 3 v~v~p~~~~v~~G~~~~l~C~~~G~p~-~i~W~~~~~~~~~~~~~~~~~----~~~~~~~~L~I~~v~~~D~G~Y~C~A~ 77 (92)
T cd04977 3 VDIVPSQGEISVGESKFFLCQVIGEPK-DISWFSPNGEKLVTQQQISVV----QNDDVRSTLTIYNANIEDAGIYKCVAT 77 (92)
T ss_pred EEEecCcEEECCCCeEEEEEEeEeeCC-eEEEECCCCCEeccCCCEEEE----eCCCCEEEEEEecCCcccCEEEEEEEE
Confidence 456788889999999999999999974 899997 66666554444321 122333469999999999999999999
Q ss_pred cCCEE
Q psy15667 84 NRAGT 88 (286)
Q Consensus 84 n~~g~ 88 (286)
|..|.
T Consensus 78 N~~g~ 82 (92)
T cd04977 78 DAKGT 82 (92)
T ss_pred cCCCC
Confidence 98653
No 104
>cd05858 Ig3_FGFR-2 Third immunoglobulin (Ig)-like domain of fibroblast growth factor receptor 2 (FGFR2). Ig3_FGFR-2-like; domain similar to the third immunoglobulin (Ig)-like domain of human fibroblast growth factor receptor 2 (FGFR2). Fibroblast growth factors (FGFs) participate in morphogenesis, development, angiogenesis, and wound healing. These FGF-stimulated processes are mediated by four FGFR tyrosine kinases (FGRF1-4). FGFRs are comprised of an extracellular portion consisting of three Ig-like domains, a transmembrane helix, and a cytoplasmic portion having protein tyrosine kinase activity. The highly conserved Ig-like domains 2 and 3, and the linker region between D2 and D3 define a general binding site for FGFs. FGFR2 is required for male sex determination.
Probab=99.51 E-value=1.3e-13 Score=94.96 Aligned_cols=35 Identities=34% Similarity=0.559 Sum_probs=33.6
Q ss_pred eeEEEcccCCCCCeEEEEEEEecccceeeEEEEEE
Q psy15667 251 SLLSINSVSAAHSGEYTCVASNTAAQARYSSKLQV 285 (286)
Q Consensus 251 ~~L~i~~v~~~d~G~Y~C~a~N~~g~~~~~~~L~V 285 (286)
..|.|.+++.+|+|.|+|.|.|.+|....++.|.|
T Consensus 55 ~~L~I~~v~~~D~G~Y~C~A~N~~G~~~~~a~L~V 89 (90)
T cd05858 55 EVLYLRNVTFEDAGEYTCLAGNSIGISHHSAWLTV 89 (90)
T ss_pred eEEEEccCCHHHCEEEEEEEEeCCCcccceEEEEE
Confidence 57999999999999999999999999999999987
No 105
>cd05724 Ig2_Robo Second immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Ig2_Robo: domain similar to the second immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit responsiveness, antago
Probab=99.51 E-value=1.4e-13 Score=94.06 Aligned_cols=77 Identities=30% Similarity=0.556 Sum_probs=59.8
Q ss_pred CCCCCeEEEEEeeecCCCCCeEEEEeCCeeCCCCC-CceeeecCCCeeeEEEcccCCCCCeEEEEEEEecccce-eeEEE
Q psy15667 205 LPEGARTRVICGVTHGDPPLTIRWLKDGKPLSPRF-PVNVSDLDSFSSLLSINSVSAAHSGEYTCVASNTAAQA-RYSSK 282 (286)
Q Consensus 205 ~~~g~~~~l~c~~~~~~p~~~~~W~~~g~~~~~~~-~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~N~~g~~-~~~~~ 282 (286)
+.+|+.+.|.|.+..|.|.|.+.|+|+|..+.... ++.+.. .+.|.|.+++.+|+|.|+|.|.|.+|.. +..+.
T Consensus 8 ~~~G~~v~l~C~~~~g~p~p~i~W~k~g~~~~~~~~~~~~~~----~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~s~~~~ 83 (86)
T cd05724 8 VAVGEMAVLECSPPRGHPEPTVSWRKDGQPLNLDNERVRIVD----DGNLLIAEARKSDEGTYKCVATNMVGERESAAAR 83 (86)
T ss_pred EeCCCCEEEEEECCCCCCCCEEEEEECCEECCCCCCCEEEcc----CCEEEEeECCcccCEEEEEEEEeccCceeeeeEE
Confidence 56788888888776688899999999999886532 232221 3579999999999999999999999975 44666
Q ss_pred EEE
Q psy15667 283 LQV 285 (286)
Q Consensus 283 L~V 285 (286)
|.|
T Consensus 84 l~V 86 (86)
T cd05724 84 LSV 86 (86)
T ss_pred EEC
Confidence 654
No 106
>cd04971 Ig_TrKABC_d5 Fifth domain (immunoglobulin-like) of Trk receptors TrkA, TrkB and TrkC. TrkABC_d5: the fifth domain of Trk receptors TrkA, TrkB and TrkC, this is an immunoglobulin (Ig)-like domain which binds to neurotrophin. The Trk family of receptors are tyrosine kinase receptors. They are activated by dimerization, leading to autophosphorylation of intracellular tyrosine residues, and triggering the signal transduction pathway. TrkA, TrkB, and TrkC share significant sequence homology and domain organization. The first three domains are leucine-rich domains. The fourth and fifth domains are Ig-like domains playing a part in ligand binding. TrkA, Band C mediate the trophic effects of the neurotrophin Nerve growth factor (NGF) family. TrkA is recognized by NGF. TrkB is recognized by brain-derived neurotrophic factor (BDNF) and neurotrophin (NT)-4. TrkC is recognized by NT-3. NT-3 is promiscuous as in some cell systems it activates TrkA and TrkB receptors. TrkA is a receptor foun
Probab=99.51 E-value=1.2e-13 Score=92.73 Aligned_cols=70 Identities=20% Similarity=0.315 Sum_probs=52.9
Q ss_pred EEEEeecCCCCeeEEeeCCEEcCCCCeeEeceEEe--cccceeEEEEEcccccCCCeEEEEEEEcCCEEEEE
Q psy15667 22 LKCIASGNPTPDIGWTLDGFELPTNNRFVIGQFVS--GHGDVISHVNISHVTVEDGGEYACVAENRAGTCEI 91 (286)
Q Consensus 22 l~C~~~g~p~p~v~W~~~~~~l~~~~~~~~~~~~~--~~~~~~~~l~I~~~~~~D~G~Y~C~a~n~~g~~~~ 91 (286)
|.|.+.|+|.|.|+|+|||+.|..+.++....... ........|.|.+++.+|+|.|+|.|.|..|..+.
T Consensus 3 i~~~v~G~P~P~v~W~k~g~~i~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~YtC~A~N~~G~~~~ 74 (81)
T cd04971 3 IPFTVRGNPKPTLTWYHNGAVLNESDYIRTEIHYEVTTPTEYHGCLQFDNPTHVNNGNYTLVASNEYGQDSK 74 (81)
T ss_pred EEEEeEeeCCCcEEEEECCEECcCCCceeEEEEeecccccccEEEEEECCCCcccCeEEEEEEEeCCCCeee
Confidence 68999999999999999999998665433211111 01112335999999999999999999999987653
No 107
>cd05731 Ig3_L1-CAM_like Third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). Ig3_L1-CAM_like: domain similar to the third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. This group also contains the chicken neuron-glia cell adhesion molecule, Ng-CAM and human neurofascin.
Probab=99.51 E-value=7.1e-14 Score=91.85 Aligned_cols=70 Identities=33% Similarity=0.545 Sum_probs=53.6
Q ss_pred EEEEeeecCCCCCeEEEEeCCeeCCCCCCceeeecCCCeeeEEEcccCCCCCeEEEEEEEecccceeeEEEEEEC
Q psy15667 212 RVICGVTHGDPPLTIRWLKDGKPLSPRFPVNVSDLDSFSSLLSINSVSAAHSGEYTCVASNTAAQARYSSKLQVK 286 (286)
Q Consensus 212 ~l~c~~~~~~p~~~~~W~~~g~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~N~~g~~~~~~~L~V~ 286 (286)
.|.|.+. |.|.|.+.|+|++..+.... .... .....|.|.+++.+|+|.|+|.|.|..|....++.|.|+
T Consensus 2 ~l~C~~~-g~P~p~v~W~k~~~~~~~~~-~~~~---~~~~~L~i~~v~~~D~G~Y~C~a~N~~G~~~~~~~l~V~ 71 (71)
T cd05731 2 LLECIAE-GLPTPEISWIKIGGELPADR-TKFE---NFNKTLKIDNVSEEDDGEYRCTASNSLGSARHTISVTVE 71 (71)
T ss_pred EEEEEee-EecCCeEEEEECCeECCCCc-eeEe---cCCCEEEECCCCHHHCEEEEEEEEeCCceEEEEEEEEEC
Confidence 4666654 66777888888887664321 1111 224589999999999999999999999999999999986
No 108
>cd05869 Ig5_NCAM-1 Fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM). Ig5_NCAM-1: The fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM). NCAM plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM) and heterophilic (NCAM-non-NCAM) interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves Ig1, Ig2, and Ig3. By this model, Ig1 and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM molecules expressed on the surface of opposing cells (tr
Probab=99.51 E-value=2e-13 Score=95.47 Aligned_cols=36 Identities=39% Similarity=0.525 Sum_probs=33.7
Q ss_pred eeeEEEcccCCCCCeEEEEEEEecccceeeEEEEEE
Q psy15667 250 SSLLSINSVSAAHSGEYTCVASNTAAQARYSSKLQV 285 (286)
Q Consensus 250 ~~~L~i~~v~~~d~G~Y~C~a~N~~g~~~~~~~L~V 285 (286)
.+.|.|.+++.+|+|.|+|.|.|.+|....++.|.|
T Consensus 62 ~~~L~I~~v~~~D~G~Y~C~A~N~~G~~~~~~~l~v 97 (97)
T cd05869 62 VSSLTLKYIQYTDAGEYLCTASNTIGQDSQSMYLEV 97 (97)
T ss_pred EEEEEEecCccCcCEEEEEEEecCCCCeeEEEEEEC
Confidence 467999999999999999999999999999999976
No 109
>cd05740 Ig_CEACAM_D4 Fourth immunoglobulin (Ig)-like domain of carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM). Ig_CEACAM_D4: immunoglobulin (Ig)-like domain 4 in carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM) protein subfamily. The CEA family is a group of anchored or secreted glycoproteins, expressed by epithelial cells, leukocytes, endothelial cells and placenta. The CEA family is divided into the CEACAM and pregnancy-specific glycoprotein (PSG) subfamilies. This group represents the CEACAM subfamily. CEACAM1 has many important cellular functions, it is a cell adhesion molecule, and a signaling molecule that regulates the growth of tumor cells, it is an angiogenic factor, and is a receptor for bacterial and viral pathogens, including mouse hepatitis virus (MHV). In mice, four isoforms of CEACAM1 generated by alternative splicing have either two [D1, D4] or four [D1-D4] Ig-like domains on the cell surface. This family corresponds to the
Probab=99.51 E-value=1.6e-13 Score=94.41 Aligned_cols=79 Identities=28% Similarity=0.464 Sum_probs=62.6
Q ss_pred CeeE--eccccccccCCCcEEEEEEeecCCCCeeEEeeCCEEcCCCCeeEeceEEecccceeEEEEEcccccCCCeEEEE
Q psy15667 3 PILT--YSFIEQTLQPGPAVSLKCIASGNPTPDIGWTLDGFELPTNNRFVIGQFVSGHGDVISHVNISHVTVEDGGEYAC 80 (286)
Q Consensus 3 p~~~--~~~~~~~~~~G~~~~l~C~~~g~p~p~v~W~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~I~~~~~~D~G~Y~C 80 (286)
|.|. -...++++.+|++++|.|.+.|. .|.+.|++|+..+..+ ++.. ...+ ..|.|.+++.+|+|.|+|
T Consensus 2 p~~~~~~~~~~~~v~~g~~v~l~C~a~g~-~p~i~W~kng~~l~~~-~~~~----~~~~---~~L~I~~v~~~D~G~Y~C 72 (91)
T cd05740 2 PVINSNNSVGNQPPEDNQPVTLTCEAEGQ-ATYIWWVNNGSLLVPP-RLQL----SNDN---RTLTFNNVTRSDTGHYQC 72 (91)
T ss_pred CEeecccccCccccccCCcEEEEEEeCCC-CCEEEEEECCEECCCC-CEEE----eCCC---CEEEECcCChhhCEEEEE
Confidence 4553 44557899999999999999999 9999999999988653 3322 1111 248999999999999999
Q ss_pred EEEcCCEEEE
Q psy15667 81 VAENRAGTCE 90 (286)
Q Consensus 81 ~a~n~~g~~~ 90 (286)
.|.|..|...
T Consensus 73 ~a~N~~G~~~ 82 (91)
T cd05740 73 EASNEVSNMT 82 (91)
T ss_pred EEEcCCCCEE
Confidence 9999998754
No 110
>cd05864 Ig2_VEGFR-2 Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 2 (VEGFR-2). Ig2_VEGF-2: Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 2 (VEGFR-2). The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. VEGFRs bind VEGFs with high affinity at the Ig-like domains. VEGFR-2 (KDR/Flk-1) is a major mediator of the mitogenic, angiogenic and microvascular permeability-enhancing effects of VEGF-A; VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGF-A also interacts with VEGFR-1, which it binds more strongly than VEGFR-2. VEGFR-2 and -1 may mediate a chemotactic and a survival signal in hematopoietic stem cells or leukemia cells.
Probab=99.50 E-value=6.5e-14 Score=91.21 Aligned_cols=61 Identities=31% Similarity=0.521 Sum_probs=50.7
Q ss_pred EEEEEEeecCCCCeeEEeeCCEEcCCCCeeEeceEEecccceeEEEEEcccccCCCeEEEEEEEcCCEEEE
Q psy15667 20 VSLKCIASGNPTPDIGWTLDGFELPTNNRFVIGQFVSGHGDVISHVNISHVTVEDGGEYACVAENRAGTCE 90 (286)
Q Consensus 20 ~~l~C~~~g~p~p~v~W~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~I~~~~~~D~G~Y~C~a~n~~g~~~ 90 (286)
+.|.|.+.|.|.|.+.|+|||++|..+.++. .+ ..|.|.++..+|+|.|+|.|.|..|..+
T Consensus 1 ~~~~c~v~G~P~P~v~W~k~g~~l~~~~~~~-------~~---~~L~I~~v~~~D~G~YtC~a~N~~G~~~ 61 (70)
T cd05864 1 VKIPVKYYGYPPPEVKWYKNGQLIVLNHTFK-------RG---VHLTIYEVTEKDAGNYTVVLTNPITKEE 61 (70)
T ss_pred CEEEeEEEEeCCCEEEEEECCEECCCCCEEc-------cC---CEEEECcCCHHHCEEEEEEEEECCCcee
Confidence 4689999999999999999999997654331 11 1488999999999999999999988654
No 111
>cd04976 Ig2_VEGFR Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor (VEGFR). Ig2_VEGFR: Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor (VEGFR). The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. The VEGFR family consists of three members, VEGFR-1 (Flt-1), VEGFR-2 (KDR/Flk-1) and VEGFR-3 (Flt-4). VEGFRs bind VEGFs with high affinity at the Ig-like domains. VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGFR-2 is a major mediator of the mitogenic, angiogenic and microvascular permeability-enhancing effects of VEGF-A. VEGFR-1 may play an inhibitory part in these processes by binding VEGF and interfering with its interaction with VEGFR-2. VEGFR-1 has a signa
Probab=99.50 E-value=7.9e-14 Score=91.44 Aligned_cols=61 Identities=31% Similarity=0.510 Sum_probs=51.2
Q ss_pred EEEEEEeecCCCCeeEEeeCCEEcCCCCeeEeceEEecccceeEEEEEcccccCCCeEEEEEEEcCCEEE
Q psy15667 20 VSLKCIASGNPTPDIGWTLDGFELPTNNRFVIGQFVSGHGDVISHVNISHVTVEDGGEYACVAENRAGTC 89 (286)
Q Consensus 20 ~~l~C~~~g~p~p~v~W~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~I~~~~~~D~G~Y~C~a~n~~g~~ 89 (286)
+.|.|.+.|.|.|.+.|+|||.+|..+.++.. .+ ..|.|.++..+|+|.|+|.|.|..|..
T Consensus 1 ~~l~c~v~g~P~p~v~W~k~g~~l~~~~~~~~------~~---~~L~I~~v~~~D~G~YtC~a~N~~g~~ 61 (71)
T cd04976 1 VRLPVKVKAYPPPEIQWYKNGKLISEKNRTKK------SG---HSLTIKDVTEEDAGNYTVVLTNKQAKL 61 (71)
T ss_pred CEEEeEEEEeCCCEEEEEECCEECCCCCEEEc------CC---CEEEECcCCHHHCEEEEEEEEcCCccE
Confidence 47999999999999999999999977655432 11 258999999999999999999998854
No 112
>KOG3515|consensus
Probab=99.50 E-value=3e-13 Score=122.45 Aligned_cols=271 Identities=19% Similarity=0.251 Sum_probs=167.2
Q ss_pred CCeeEeccccccccCCCcEEEEEEeecCC-CCeeEEeeCCEEcCCCCeeEeceEEecccceeEEEEEcccccCCCeEEEE
Q psy15667 2 PPILTYSFIEQTLQPGPAVSLKCIASGNP-TPDIGWTLDGFELPTNNRFVIGQFVSGHGDVISHVNISHVTVEDGGEYAC 80 (286)
Q Consensus 2 ~p~~~~~~~~~~~~~G~~~~l~C~~~g~p-~p~v~W~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~I~~~~~~D~G~Y~C 80 (286)
+|..+-...+.-+.+|+.|.|.|.+.++| .+.|.|++.+..+- .|+.. + .. .+|...+...+.-+.|.|
T Consensus 7 ~pv~~~~~l~~~~~~g~~v~l~C~v~~~pp~~~~eW~h~~~~~~--~~~~~---~--~~---~~~~~~~~~~~~~~~~~c 76 (741)
T KOG3515|consen 7 VPVCESSSLTVGLRLGEDVPLPCRVNSNPPEIDVEWYHSTSGEH--GRYAT---I--AD---PTLVTTGDVRDTVAELNC 76 (741)
T ss_pred CccccCCCCChhhccCCcceeeeecCCCCCCcceEEEecCcccc--ccccc---c--cC---Cceeeecchhhhhhhhhh
Confidence 35555555566889999999999999875 46899999987765 23211 0 11 125555666656679999
Q ss_pred EEEcCCEEEEE------------------------------e----cCCCCCeeEEEeeCCccCcCC-------------
Q psy15667 81 VAENRAGTCEI------------------------------T----PYDSGPYLIAWFKDGRQIPGR------------- 113 (286)
Q Consensus 81 ~a~n~~g~~~~------------------------------~----~~~~~~~~~~W~~~g~~l~~~------------- 113 (286)
+|.|..+.... . ....+.+.+.|+.|+......
T Consensus 77 ~a~ns~~~~~~~~~~l~v~~~pa~~~~~~e~~~~~~~vvqi~c~~~~~~~P~~nlrW~~n~r~e~~~~~~~~~~~~~a~g 156 (741)
T KOG3515|consen 77 RAFNSVGMPSRCPMILDVDYPPACLPELGEIFQVDKGVVQIICSAKVAGRPNPNLRWGFNNRAELNAVNQRGRVGAGALG 156 (741)
T ss_pred hhcccccCceecceeeccccCccccccccchhhhcCCeEEEEEeecCCCCCCcceeeeeccEEeecccCCcccccccccC
Confidence 99987653211 1 112234678898887654210
Q ss_pred ---CCcceEEEccCCCCCCeeEEEEEEcC---CcceeeeeeEEEEcCCC---ceecCCc-eEEecCCCEEEEeeEee-ec
Q psy15667 114 ---TSSTSLVINPVGREDRGIYQCIARRS---DGDVAQGSAELQLGGLP---YVRLIPK-VTAIDGEGLSIKCPVAG-YP 182 (286)
Q Consensus 114 ---~~~~~l~i~~v~~~d~G~Y~C~a~~~---~g~~~~~~~~l~v~~~~---~~~~~~~-~~~~~g~~~~l~c~~~~-~p 182 (286)
.....+.+.....++.|.|+|.|.|. .+.. .....+.+.... .+....+ ....+|+.+.|.|.+.+ .|
T Consensus 157 ss~t~~s~l~~~v~Rka~~g~~tC~A~nr~s~~l~~-~~~~~i~v~~~~~~~~~~~~~~~qsF~~g~~inlvc~~~gg~P 235 (741)
T KOG3515|consen 157 SSYTEPSLLKQTVSRKADNGNYTCPANNRNSPGLSF-AKQLTIIVEAPCKGIGITGAQEQQSFTEGQTINLVCNAQGGNP 235 (741)
T ss_pred ceeccccceeeEEEEecCCceeEcccccccCccccc-cceeEeecccccccceecchhhcCcccccceEEEEehhhcCCc
Confidence 11244667777789999999999883 2222 112223332211 1111222 34568999999998776 68
Q ss_pred CCeEEEEEcCCcccc------------------------------------------------------cccccCCCCCC
Q psy15667 183 IEEVHWEKVPPKIES------------------------------------------------------FAFPFDGLPEG 208 (286)
Q Consensus 183 ~~~v~w~~~~~~~~~------------------------------------------------------~~~~~~~~~~g 208 (286)
.+..+|.+....... ...+...+..|
T Consensus 236 ~~~~~w~~~s~~~~~~sl~~~~~sg~~v~~~~~~~~~r~~~~~~~kc~a~n~~~~~~~tav~~~~~~~~Ist~~~~ls~g 315 (741)
T KOG3515|consen 236 SQQQTWYKDSRPQSESSLLSQEPSGDTVSSTLVLRVGRQDLQAQLKCKASNLLAASQITAVQVKPTAVPISTSDSGLSSG 315 (741)
T ss_pred chhhhhccccccchhhhcccCCCCCCcccccccccccccchhhhhhccccCccccceeeecccccccccccCcccccccc
Confidence 889999972111000 00012335678
Q ss_pred CeEEEEEeeecCCCCCeEEEEeCCeeCCCCCCceeeecC---CCeeeEEEcccCCCCCeEEEEEEEecccceeeEEEE
Q psy15667 209 ARTRVICGVTHGDPPLTIRWLKDGKPLSPRFPVNVSDLD---SFSSLLSINSVSAAHSGEYTCVASNTAAQARYSSKL 283 (286)
Q Consensus 209 ~~~~l~c~~~~~~p~~~~~W~~~g~~~~~~~~~~~~~~~---~~~~~L~i~~v~~~d~G~Y~C~a~N~~g~~~~~~~L 283 (286)
....+.|..+.+.|+..+.|+|+...........-.... .....+........|.|.|+|.|.|.......+...
T Consensus 316 ~s~r~~c~~sss~p~~~i~w~~~~~~~~~~~~~~~~t~~~~~v~~~~~~~q~~~~~~~g~v~c~a~~~~~~~~sss~~ 393 (741)
T KOG3515|consen 316 RSARSSCVSSSSKPPAHIAWYKDTKMPKGSQKASSKTSNMGGVAVISHYAQPSSQQDGGQVTCPADNLELAHSSSSSF 393 (741)
T ss_pred cccccceeccCCCCccceeeeccCcccccccCcccCCCcccceeeEEeeecccchhcCceEEccccccccccccccce
Confidence 999999998889999999999977655433221111110 112234566777889999999999987655554443
No 113
>cd04970 Ig6_Contactin_like Sixth Ig domain of contactin. Ig6_Contactin_like: Sixth Ig domain of contactins. Contactins are neural cell adhesion molecules and are comprised of six Ig domains followed by four fibronectin type III(FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module via contacts between Ig domains 1 and 4, and between Ig domains 2 and 3. Contactin-2 (TAG-1, axonin-1) may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. This group also includes contactin-1 and contactin-5. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-5 is expressed specifically in the rat postnatal nervous system, peaking at about 3 week
Probab=99.50 E-value=2.1e-13 Score=92.97 Aligned_cols=76 Identities=25% Similarity=0.393 Sum_probs=55.3
Q ss_pred eEEEEEeeecCCCCC--eEEEEeCCeeCCCCC---CceeeecCCCeeeEEEcccCCCCCeEEEEEEEecccceeeEEEEE
Q psy15667 210 RTRVICGVTHGDPPL--TIRWLKDGKPLSPRF---PVNVSDLDSFSSLLSINSVSAAHSGEYTCVASNTAAQARYSSKLQ 284 (286)
Q Consensus 210 ~~~l~c~~~~~~p~~--~~~W~~~g~~~~~~~---~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~N~~g~~~~~~~L~ 284 (286)
.+.|.|.+. |.|.| .+.|+|+|..+.... .+.........+.|.|.+++.+|+|.|+|.|.|.+|....++.|.
T Consensus 2 ~~~L~C~~~-g~P~p~i~~~W~~~g~~i~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~n~~g~~~~~~~l~ 80 (85)
T cd04970 2 SITLQCHAS-HDPTLDLTFTWSFNGVPIDFDKDGGHYRRVGGKDSNGDLMIRNAQLKHAGKYTCTAQTVVDSLSASADLI 80 (85)
T ss_pred cEEEEEEEe-cCCCCCeEEEEEECCeEeeccCCCccEEEEecccccceEEEccCCHHhCeeeEEEEecCCCcEEEEEEEE
Confidence 456667664 44544 578999998875332 111111112356899999999999999999999999999999998
Q ss_pred EC
Q psy15667 285 VK 286 (286)
Q Consensus 285 V~ 286 (286)
|+
T Consensus 81 V~ 82 (85)
T cd04970 81 VR 82 (85)
T ss_pred EE
Confidence 84
No 114
>cd05856 Ig2_FGFRL1-like Second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor_like-1(FGFRL1). Ig2_FGFRL1-like: second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor_like-1(FGFRL1). FGFRL1 is comprised of a signal peptide, three extracellular Ig-like modules, a transmembrane segment, and a short intracellular domain. FGFRL1 is expressed preferentially in skeletal tissues. Similar to FGF receptors, the expressed protein interacts specifically with heparin and with FGF2. FGFRL1 does not have a protein tyrosine kinase domain at its C terminus; neither does its cytoplasmic domain appear to interact with a signaling partner. It has been suggested that FGFRL1 may not have any direct signaling function, but instead acts as a decoy receptor trapping FGFs and preventing them from binding other receptors.
Probab=99.50 E-value=1.7e-13 Score=92.72 Aligned_cols=77 Identities=35% Similarity=0.582 Sum_probs=59.3
Q ss_pred CCCCCeEEEEEeeecCCCCCeEEEEeCCeeCCCCCCceeeecCCCeeeEEEcccCCCCCeEEEEEEEecccceeeEEEEE
Q psy15667 205 LPEGARTRVICGVTHGDPPLTIRWLKDGKPLSPRFPVNVSDLDSFSSLLSINSVSAAHSGEYTCVASNTAAQARYSSKLQ 284 (286)
Q Consensus 205 ~~~g~~~~l~c~~~~~~p~~~~~W~~~g~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~N~~g~~~~~~~L~ 284 (286)
...|+.+.|.|.+. |.|.|.+.|+|++..+........ ......|.|.++..+|+|.|+|.|.|..|....++.|.
T Consensus 6 ~~~G~~v~L~C~~~-g~p~p~i~W~k~~~~~~~~~~~~~---~~~~~~L~i~~v~~~D~G~Y~C~a~N~~G~~~~~~~v~ 81 (82)
T cd05856 6 RPVGSSVRLKCVAS-GNPRPDITWLKDNKPLTPTEIGES---RKKKWTLSLKNLKPEDSGKYTCHVSNRAGEINATYKVD 81 (82)
T ss_pred ccCCCeEEEEEEee-EeCCCcEEEEECCcCCcCCcccee---cCceEEEEEccCChhhCEEEEEEEEcCCccEEEEEEEe
Confidence 45677888888764 567788999999987754332211 12245799999999999999999999999998888886
Q ss_pred E
Q psy15667 285 V 285 (286)
Q Consensus 285 V 285 (286)
|
T Consensus 82 v 82 (82)
T cd05856 82 V 82 (82)
T ss_pred C
Confidence 5
No 115
>cd05750 Ig_Pro_neuregulin Immunoglobulin (Ig)-like domain in neuregulins (NRGs). Ig_Pro_neuregulin: immunoglobulin (Ig)-like domain in neuregulins (NRGs). NRGs are signaling molecules, which participate in cell-cell interactions in the nervous system, breast, heart, and other organ systems, and are implicated in the pathology of diseases including schizophrenia, multiple sclerosis, and breast cancer. There are four members of the neuregulin gene family (NRG1, -2, -3, and -4). The NRG-1 protein, binds to and activates the tyrosine kinases receptors ErbB3 and ErbB4, initiating signaling cascades. The other NRGs proteins bind one or the other or both of these ErbBs. NRG-1 has multiple functions; for example, in the brain it regulates various processes such as radial glia formation and neuronal migration, dendritic development, and expression of neurotransmitters receptors; in the peripheral nervous system NRG-1 regulates processes such as target cell differentiation, and Schwann cell surv
Probab=99.50 E-value=1.9e-13 Score=90.84 Aligned_cols=71 Identities=32% Similarity=0.492 Sum_probs=55.0
Q ss_pred EEEEeeecCCCCCeEEEEeCCeeCCCCCCcee--eecCCCeeeEEEcccCCCCCeEEEEEEEecccceeeEEE
Q psy15667 212 RVICGVTHGDPPLTIRWLKDGKPLSPRFPVNV--SDLDSFSSLLSINSVSAAHSGEYTCVASNTAAQARYSSK 282 (286)
Q Consensus 212 ~l~c~~~~~~p~~~~~W~~~g~~~~~~~~~~~--~~~~~~~~~L~i~~v~~~d~G~Y~C~a~N~~g~~~~~~~ 282 (286)
.|.|.+..+.|.|.+.|+|+|..+........ .........|.|.+++.+|+|.|+|.|.|.+|....++.
T Consensus 2 ~l~C~~~g~~P~p~~~W~k~g~~l~~~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~~~~~ 74 (75)
T cd05750 2 VLKCEATSEYPSLRFKWFKDGKELNRKNKPRNIKIRNKKKNSELQINKAKLADSGEYTCVVENILGNDTVTAN 74 (75)
T ss_pred EEEEEccCCCCCceEEEEcCCeeccccCCcceEEEEecCceEEEEEccCCcccCeEEEEEEEEcCCceeEEEe
Confidence 57888875588899999999998865443221 111223568999999999999999999999999887764
No 116
>cd05724 Ig2_Robo Second immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Ig2_Robo: domain similar to the second immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit responsiveness, antago
Probab=99.49 E-value=1.8e-13 Score=93.53 Aligned_cols=75 Identities=31% Similarity=0.547 Sum_probs=61.1
Q ss_pred ccccccccCCCcEEEEEEe-ecCCCCeeEEeeCCEEcCC-CCeeEeceEEecccceeEEEEEcccccCCCeEEEEEEEcC
Q psy15667 8 SFIEQTLQPGPAVSLKCIA-SGNPTPDIGWTLDGFELPT-NNRFVIGQFVSGHGDVISHVNISHVTVEDGGEYACVAENR 85 (286)
Q Consensus 8 ~~~~~~~~~G~~~~l~C~~-~g~p~p~v~W~~~~~~l~~-~~~~~~~~~~~~~~~~~~~l~I~~~~~~D~G~Y~C~a~n~ 85 (286)
.+.++++.+|+++.|.|.+ .|.|.|.+.|+|++..+.. +.++.+. .. ..|.|.+++.+|+|.|+|.|.|.
T Consensus 2 ~p~~~~~~~G~~v~l~C~~~~g~p~p~i~W~k~g~~~~~~~~~~~~~-----~~---~~L~I~~~~~~D~G~Y~C~a~N~ 73 (86)
T cd05724 2 EPSDTQVAVGEMAVLECSPPRGHPEPTVSWRKDGQPLNLDNERVRIV-----DD---GNLLIAEARKSDEGTYKCVATNM 73 (86)
T ss_pred CCccEEEeCCCCEEEEEECCCCCCCCEEEEEECCEECCCCCCCEEEc-----cC---CEEEEeECCcccCEEEEEEEEec
Confidence 4567789999999999998 7999999999999998875 3444321 11 24889999999999999999998
Q ss_pred CEEEE
Q psy15667 86 AGTCE 90 (286)
Q Consensus 86 ~g~~~ 90 (286)
.|...
T Consensus 74 ~G~~~ 78 (86)
T cd05724 74 VGERE 78 (86)
T ss_pred cCcee
Confidence 88654
No 117
>cd05722 Ig1_Neogenin First immunoglobulin (Ig)-like domain in neogenin and similar proteins. Ig1_Neogenin: first immunoglobulin (Ig)-like domain in neogenin and related proteins. Neogenin is a cell surface protein which is expressed in the developing nervous system of vertebrate embryos in the growing nerve cells. It is also expressed in other embryonic tissues, and may play a general role in developmental processes such as cell migration, cell-cell recognition, and tissue growth regulation. Included in this group is the tumor suppressor protein DCC, which is deleted in colorectal carcinoma . DCC and neogenin each have four Ig-like domains followed by six fibronectin type III domains, a transmembrane domain, and an intracellular domain.
Probab=99.49 E-value=1.6e-13 Score=95.56 Aligned_cols=79 Identities=30% Similarity=0.443 Sum_probs=61.4
Q ss_pred eeEeccccccccCCCcEEEEEEeecCCCCeeEEeeCCEEcCCCCe--eEeceEEecccceeEEEEEccc-----ccCCCe
Q psy15667 4 ILTYSFIEQTLQPGPAVSLKCIASGNPTPDIGWTLDGFELPTNNR--FVIGQFVSGHGDVISHVNISHV-----TVEDGG 76 (286)
Q Consensus 4 ~~~~~~~~~~~~~G~~~~l~C~~~g~p~p~v~W~~~~~~l~~~~~--~~~~~~~~~~~~~~~~l~I~~~-----~~~D~G 76 (286)
.|...+.+..+.+|+++.|.|.+.|+|.|.+.|+|||..|..... +.. ..++ .|.|.++ ..+|+|
T Consensus 1 ~f~~~P~~~~~~~g~~v~l~C~v~g~P~p~i~W~k~g~~l~~~~~~~~~~----~~~~----~l~i~~v~~~~~~~~D~G 72 (95)
T cd05722 1 WFLSEPSDIVAVRGGPVVLNCSAEGEPPPKIEWKKDGVLLNLVSDERRQQ----LPNG----SLLITSVVHSKHNKPDEG 72 (95)
T ss_pred CcEECCCCeEEcCCCCEEEeeecccCCCCEEEEEECCeECccccCcceEE----ccCC----eEEEeeeeccCCCCCcCE
Confidence 366788888999999999999999999999999999999864432 221 1122 2445554 689999
Q ss_pred EEEEEEEcC-CEEEE
Q psy15667 77 EYACVAENR-AGTCE 90 (286)
Q Consensus 77 ~Y~C~a~n~-~g~~~ 90 (286)
.|+|.|.|. .|...
T Consensus 73 ~Y~C~a~N~~~G~~~ 87 (95)
T cd05722 73 FYQCVAQNDSLGSIV 87 (95)
T ss_pred EEEEEEECCccCcEE
Confidence 999999999 88764
No 118
>cd05866 Ig1_NCAM-2 First immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-2. Ig1_NCAM-2: first immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-2 (OCAM/mamFas II, RNCAM). NCAM-2 is organized similarly to NCAM , including five N-terminal Ig-like domains and two fibronectin type III domains. NCAM-2 is differentially expressed in the developing and mature olfactory epithelium (OE), and may function like NCAM, as an adhesion molecule.
Probab=99.48 E-value=3.9e-13 Score=92.45 Aligned_cols=78 Identities=24% Similarity=0.492 Sum_probs=54.5
Q ss_pred CCCCCeEEEEEeeecCCCCCeEEEEe-CCeeCCCCCCceeeecCCCeeeEEEcccCCCCCeEEEEEEEecccce-eeEEE
Q psy15667 205 LPEGARTRVICGVTHGDPPLTIRWLK-DGKPLSPRFPVNVSDLDSFSSLLSINSVSAAHSGEYTCVASNTAAQA-RYSSK 282 (286)
Q Consensus 205 ~~~g~~~~l~c~~~~~~p~~~~~W~~-~g~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~N~~g~~-~~~~~ 282 (286)
+.+|+.+.|.|.+. |.|. .+.|++ ++..+....++.+.. ......|.|.++..+|+|.|+|.|.|..|.. ..+..
T Consensus 12 v~~G~~v~l~C~~~-G~P~-~v~W~k~~g~~~~~~~r~~~~~-~g~~~~L~I~~v~~~D~G~Y~C~A~N~~G~~~~~~i~ 88 (92)
T cd05866 12 LSVGESKFFTCTAI-GEPE-SIDWYNPQGEKIVSSQRVVVQK-EGVRSRLTIYNANIEDAGIYRCQATDAKGQTQEATVV 88 (92)
T ss_pred EcCCCeEEEEEEEE-EeCC-eEEEEeCCCeEecCCCCEEEEe-CCCeeEEEEecCChHHCEEEEEEEEcCCCcEEEEEEE
Confidence 45566666666653 4555 788887 466665554544332 2234589999999999999999999999985 66666
Q ss_pred EEE
Q psy15667 283 LQV 285 (286)
Q Consensus 283 L~V 285 (286)
|.|
T Consensus 89 l~~ 91 (92)
T cd05866 89 LEI 91 (92)
T ss_pred EEE
Confidence 654
No 119
>cd04978 Ig4_L1-NrCAM_like Fourth immunoglobulin (Ig)-like domain of L1, Ng-CAM (Neuron-glia CAM cell adhesion molecule), and NrCAM (Ng-CAM-related). Ig4_L1-NrCAM_like: fourth immunoglobulin (Ig)-like domain of L1, Ng-CAM (Neuron-glia CAM cell adhesion molecule), and NrCAM (Ng-CAM-related). These proteins belong to the L1 subfamily of cell adhesion molecules (CAMs) and are comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. These molecules are primarily expressed in the nervous system. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth.
Probab=99.48 E-value=1.9e-13 Score=91.07 Aligned_cols=69 Identities=29% Similarity=0.442 Sum_probs=54.8
Q ss_pred CCcEEEEEEeecCCCCeeEEeeCCEEcCCCCeeEeceEEecccceeEEEEEcccccCCCeEEEEEEEcCCEEEEE
Q psy15667 17 GPAVSLKCIASGNPTPDIGWTLDGFELPTNNRFVIGQFVSGHGDVISHVNISHVTVEDGGEYACVAENRAGTCEI 91 (286)
Q Consensus 17 G~~~~l~C~~~g~p~p~v~W~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~I~~~~~~D~G~Y~C~a~n~~g~~~~ 91 (286)
|+++.|.|.+.|+|.|.+.|++||..+........ . ...+ ..|.|.+++.+|+|.|+|.|.|..|....
T Consensus 1 G~~~~l~C~~~g~P~p~i~W~~~g~~~~~~~~~~~-~--~~~~---~~L~i~~v~~~D~G~Y~C~A~N~~G~~~~ 69 (76)
T cd04978 1 GETGRLDCEAEGIPQPTITWRLNGVPIEELPPDPR-R--RVDG---GTLILSNVQPNDTAVYQCNASNVHGYLLA 69 (76)
T ss_pred CCeEEEEEEceeeCCCEEEEEECCEECCCCCCcce-E--EccC---CEEEECCCChhhCEEEEEEEEccCCeEEE
Confidence 78999999999999999999999998865432211 0 1112 24889999999999999999999887653
No 120
>cd05752 Ig1_FcgammaR_like Frst immunoglobulin (Ig)-like domain of Fcgamma-receptors (FcgammaRs) and similar proteins. Ig1_FcgammaR_like: domain similar to the first immunoglobulin (Ig)-like domain of Fcgamma-receptors (FcgammaRs). Interactions between IgG and FcgammaR are important to the initiation of cellular and humoral response. IgG binding to FcgammaR leads to a cascade of signals and ultimately to functions such as antibody-dependent-cellular-cytotoxicity (ADCC), endocytosis, phagocytosis, release of inflammatory mediators, etc. FcgammaR has two Ig-like domains. This group also contains FcepsilonRI, which binds IgE with high affinity.
Probab=99.48 E-value=1.3e-13 Score=91.83 Aligned_cols=67 Identities=24% Similarity=0.410 Sum_probs=56.7
Q ss_pred CeeEeccccccccCCCcEEEEEEeecCCC-CeeEEeeCCEEcCCCCeeEeceEEecccceeEEEEEcccccCCCeEEEEE
Q psy15667 3 PILTYSFIEQTLQPGPAVSLKCIASGNPT-PDIGWTLDGFELPTNNRFVIGQFVSGHGDVISHVNISHVTVEDGGEYACV 81 (286)
Q Consensus 3 p~~~~~~~~~~~~~G~~~~l~C~~~g~p~-p~v~W~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~I~~~~~~D~G~Y~C~ 81 (286)
|++...+....+.+|++++|+|.+.+.|. +.+.|+|||..|..+ + ..|.|.++ .+|+|.|+|+
T Consensus 1 ~vv~~~P~~~~v~~G~~V~L~C~~~~~p~~~~~~W~kng~~l~~~------------~---~~l~i~~~-~~dsG~Y~C~ 64 (78)
T cd05752 1 AVVSLDPPWTTIFQGEKVTLTCNGFNSPEQNSTQWYHNGKLLETT------------T---NSYRIRAA-NNDSGEYRCQ 64 (78)
T ss_pred CeEEeCCCCeEeeCCCCEEEEEeCCCCCCCccEEEEECCEEeecc------------C---CeEEEeec-ccCCEEeEEE
Confidence 67888999999999999999999999886 469999999887321 1 13779999 9999999999
Q ss_pred EEcC
Q psy15667 82 AENR 85 (286)
Q Consensus 82 a~n~ 85 (286)
|.|.
T Consensus 65 a~~~ 68 (78)
T cd05752 65 TQGS 68 (78)
T ss_pred CCCC
Confidence 9874
No 121
>cd05773 Ig8_hNephrin_like Eighth immunoglobulin-like domain of nephrin. Ig8_hNephrin_like: domain similar to the eighth immunoglobulin-like domain in human nephrin. Nephrin is an integral component of the slit diaphragm, and is a central component of the glomerular ultrafilter. Nephrin plays a structural role, and has a role in signaling. Nephrin is a transmembrane protein having a short intracellular portion, and an extracellular portion comprised of eight Ig-like domains, and one fibronectin type III-like domain. The extracellular portions of nephrin, from neighboring foot processes of separate podocyte cells, may interact with each other, and in association with other components of the slit diaphragm, form a porous molecular sieve within the slit pore. The intracellular portion of nephrin is associated with linker proteins, which connect nephrin to the actin cytoskeleton. The intracellular portion is tyrosine phosphorylated, and mediates signaling from the slit diaphragm into the p
Probab=99.48 E-value=3.4e-13 Score=96.19 Aligned_cols=88 Identities=24% Similarity=0.328 Sum_probs=64.1
Q ss_pred CCeeEeccccccc----cCCCcEEEEEEeecCCCCeeEEeeCCEEcCC-CCeeEeceEEecccceeEEEEEcccc-cCCC
Q psy15667 2 PPILTYSFIEQTL----QPGPAVSLKCIASGNPTPDIGWTLDGFELPT-NNRFVIGQFVSGHGDVISHVNISHVT-VEDG 75 (286)
Q Consensus 2 ~p~~~~~~~~~~~----~~G~~~~l~C~~~g~p~p~v~W~~~~~~l~~-~~~~~~~~~~~~~~~~~~~l~I~~~~-~~D~ 75 (286)
+|.|...+....+ ..|..++|.|.+.|+|.|.+.|++||..|.. +.++.+.....+. .....|.|.++. .+|.
T Consensus 4 ~P~~~~~~~~~~~~~~~~~g~~v~L~C~a~G~P~p~i~W~k~g~~l~~~~~r~~~~~~~~~~-~~~s~L~I~~v~~~~D~ 82 (109)
T cd05773 4 APDLQKGPQLRKVASRGDGSSDANLVCQAQGVPRVQFRWAKNGVPLDLGNPRYEETTEHTGT-VHTSILTIINVSAALDY 82 (109)
T ss_pred ccccccCCceEEEEEecCCCCEEEEEEECcccCCCEEEEEECCEECCCCCCeEEEEeeccCc-cceeEEEECcCCccCCC
Confidence 6777766653322 2568999999999999999999999999864 4455432211111 112458999997 5999
Q ss_pred eEEEEEEEcCCEEEE
Q psy15667 76 GEYACVAENRAGTCE 90 (286)
Q Consensus 76 G~Y~C~a~n~~g~~~ 90 (286)
|.|+|.|.|..|...
T Consensus 83 G~Y~C~A~N~~G~~~ 97 (109)
T cd05773 83 ALFTCTAHNSLGEDS 97 (109)
T ss_pred EEEEEEEEeCCccCc
Confidence 999999999998753
No 122
>cd05740 Ig_CEACAM_D4 Fourth immunoglobulin (Ig)-like domain of carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM). Ig_CEACAM_D4: immunoglobulin (Ig)-like domain 4 in carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM) protein subfamily. The CEA family is a group of anchored or secreted glycoproteins, expressed by epithelial cells, leukocytes, endothelial cells and placenta. The CEA family is divided into the CEACAM and pregnancy-specific glycoprotein (PSG) subfamilies. This group represents the CEACAM subfamily. CEACAM1 has many important cellular functions, it is a cell adhesion molecule, and a signaling molecule that regulates the growth of tumor cells, it is an angiogenic factor, and is a receptor for bacterial and viral pathogens, including mouse hepatitis virus (MHV). In mice, four isoforms of CEACAM1 generated by alternative splicing have either two [D1, D4] or four [D1-D4] Ig-like domains on the cell surface. This family corresponds to the
Probab=99.47 E-value=5.9e-13 Score=91.62 Aligned_cols=77 Identities=25% Similarity=0.458 Sum_probs=59.7
Q ss_pred CCCCCCeEEEEEeeecCCCCCeEEEEeCCeeCCCCCCceeeecCCCeeeEEEcccCCCCCeEEEEEEEecccce-eeEEE
Q psy15667 204 GLPEGARTRVICGVTHGDPPLTIRWLKDGKPLSPRFPVNVSDLDSFSSLLSINSVSAAHSGEYTCVASNTAAQA-RYSSK 282 (286)
Q Consensus 204 ~~~~g~~~~l~c~~~~~~p~~~~~W~~~g~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~N~~g~~-~~~~~ 282 (286)
.+.+|+.+.|.|.+. |. .|.+.|+|++..+... ++.+. .....|.|.+++.+|+|.|.|.|.|.+|.. +..+.
T Consensus 14 ~v~~g~~v~l~C~a~-g~-~p~i~W~kng~~l~~~-~~~~~---~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~S~~~~ 87 (91)
T cd05740 14 PPEDNQPVTLTCEAE-GQ-ATYIWWVNNGSLLVPP-RLQLS---NDNRTLTFNNVTRSDTGHYQCEASNEVSNMTSDPYI 87 (91)
T ss_pred ccccCCcEEEEEEeC-CC-CCEEEEEECCEECCCC-CEEEe---CCCCEEEECcCChhhCEEEEEEEEcCCCCEEeeeEE
Confidence 467888888888875 56 8899999999887543 23222 224579999999999999999999999975 44777
Q ss_pred EEEC
Q psy15667 283 LQVK 286 (286)
Q Consensus 283 L~V~ 286 (286)
|.|.
T Consensus 88 L~V~ 91 (91)
T cd05740 88 LNVN 91 (91)
T ss_pred EEeC
Confidence 8774
No 123
>cd04967 Ig1_Contactin First Ig domain of contactin. Ig1_Contactin: First Ig domain of contactins. Contactins are neural cell adhesion molecules and are comprised of six Ig domains followed by four fibronectin type III(FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module via contacts between Ig domains 1 and 4, and between Ig domains 2 and 3. Contactin-2 (TAG-1, axonin-1) may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. This group also includes contactin-1 and contactin-5. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-5 is expressed specifically in the rat postnatal nervous system, peaking at about 3 weeks postnata
Probab=99.46 E-value=7.9e-13 Score=91.27 Aligned_cols=80 Identities=30% Similarity=0.590 Sum_probs=62.3
Q ss_pred CeeEeccccccccCC---CcEEEEEEeecCCCCeeEEeeCCEEcCC--CCeeEeceEEecccceeEEEEEcccc-cCCCe
Q psy15667 3 PILTYSFIEQTLQPG---PAVSLKCIASGNPTPDIGWTLDGFELPT--NNRFVIGQFVSGHGDVISHVNISHVT-VEDGG 76 (286)
Q Consensus 3 p~~~~~~~~~~~~~G---~~~~l~C~~~g~p~p~v~W~~~~~~l~~--~~~~~~~~~~~~~~~~~~~l~I~~~~-~~D~G 76 (286)
|.|...+.++.+.+| ++++|.|.+.|+|.|.++|++++..+.. ..++.. ..+ .|.|.++. .+|+|
T Consensus 2 P~f~~~p~~~~~~~~~~~~~~~l~C~~~g~p~p~i~W~k~~~~l~~~~~~~~~~-----~~~----~L~i~~~~~~~d~G 72 (91)
T cd04967 2 PVFEEQPDDTIFPEESDEGKVSLNCRARGSPPPTYRWLMNGTEIDDEPDSRYSL-----VGG----NLVISNPSKAKDAG 72 (91)
T ss_pred CeeEeCCCCEEccCCCCCCEEEEEEeeeEcCCCEEEEEECCEECCCCCCCCEEE-----ECC----EEEEecCCccCCCE
Confidence 788888888876554 6799999999999999999999998843 223321 112 37788876 48999
Q ss_pred EEEEEEEcCCEEEEE
Q psy15667 77 EYACVAENRAGTCEI 91 (286)
Q Consensus 77 ~Y~C~a~n~~g~~~~ 91 (286)
.|+|.|.|..|...-
T Consensus 73 ~Y~C~a~N~~G~~~S 87 (91)
T cd04967 73 RYQCLASNIVGTVLS 87 (91)
T ss_pred EEEEEEEcCCCEEEe
Confidence 999999999997643
No 124
>cd05876 Ig3_L1-CAM Third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). Ig3_L1-CAM: third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains, five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. This group also contains the chicken neuron-glia cell adhesion molecule, Ng-CAM.
Probab=99.46 E-value=3.1e-13 Score=88.66 Aligned_cols=64 Identities=33% Similarity=0.618 Sum_probs=50.9
Q ss_pred EEEEEEeecCCCCeeEEeeCCEEcCCCCeeEeceEEecccceeEEEEEcccccCCCeEEEEEEEcCCEEEEE
Q psy15667 20 VSLKCIASGNPTPDIGWTLDGFELPTNNRFVIGQFVSGHGDVISHVNISHVTVEDGGEYACVAENRAGTCEI 91 (286)
Q Consensus 20 ~~l~C~~~g~p~p~v~W~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~I~~~~~~D~G~Y~C~a~n~~g~~~~ 91 (286)
++|.|.+.|.|.|.+.|+|++..+..+..... ... ..|.|.+++.+|+|.|+|.|.|..|..+.
T Consensus 1 ~~L~C~~~G~P~P~v~W~k~~~~~~~~~~~~~-----~~~---~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~ 64 (71)
T cd05876 1 LVLECIAEGLPTPEVHWDRIDGPLSPNRTKKL-----NNN---KTLQLDNVLESDDGEYVCTAENSEGSARH 64 (71)
T ss_pred CEEEEEeeEecCCeEEEEECCcCCCCCceeEE-----cCC---CEEEEcccCHHhCEEEEEEEEcCCCeEEE
Confidence 47999999999999999999987765432111 111 25899999999999999999999997653
No 125
>cd05760 Ig2_PTK7 Second immunoglobulin (Ig)-like domain of protein tyrosine kinase (PTK) 7, also known as CCK4. Ig2_PTK7: domain similar to the second immunoglobulin (Ig)-like domain in protein tyrosine kinase (PTK) 7, also known as CCK4. PTK7 is a subfamily of the receptor protein tyrosine kinase family, and is referred to as an RPTK-like molecule. RPTKs transduce extracellular signals across the cell membrane, and play important roles in regulating cell proliferation, migration, and differentiation. PTK7 is organized as an extracellular portion having seven Ig-like domains, a single transmembrane region, and a cytoplasmic tyrosine kinase-like domain. PTK7 is considered a pseudokinase as it has several unusual residues in some of the highly conserved tyrosine kinase (TK) motifs; it is predicted to lack TK activity. PTK7 may function as a cell-adhesion molecule. PTK7 mRNA is expressed at high levels in placenta, melanocytes, liver, lung, pancreas, and kidney. PTK7 is overexpressed in s
Probab=99.46 E-value=3.7e-13 Score=89.81 Aligned_cols=64 Identities=28% Similarity=0.596 Sum_probs=51.3
Q ss_pred EEEEEEeecCCCCeeEEeeCCEEcCCCC-eeEeceEEecccceeEEEEEcccccCCCeEEEEEEEcCCEEEE
Q psy15667 20 VSLKCIASGNPTPDIGWTLDGFELPTNN-RFVIGQFVSGHGDVISHVNISHVTVEDGGEYACVAENRAGTCE 90 (286)
Q Consensus 20 ~~l~C~~~g~p~p~v~W~~~~~~l~~~~-~~~~~~~~~~~~~~~~~l~I~~~~~~D~G~Y~C~a~n~~g~~~ 90 (286)
++|.|.+.|.|.|++.|+|+|.+|..+. ++.+ .... ..|.|.++..+|+|.|+|.|.|..|...
T Consensus 1 v~L~C~~~g~P~p~v~W~k~g~~l~~~~~~~~~----~~~~---~~L~I~~~~~~D~G~Y~C~a~N~~G~~~ 65 (77)
T cd05760 1 VTLRCHIDGHPRPTYQWFRDGTPLSDGQGNYSV----SSKE---RTLTLRSAGPDDSGLYYCCAHNAFGSVC 65 (77)
T ss_pred CEEEEEeeecCCCcEEEEECCEECCCCCccEEE----eCCC---CEEEEeeCCcccCEEEEEEEEeCCCeEe
Confidence 5799999999999999999999986543 3322 1111 2488999999999999999999988754
No 126
>cd04977 Ig1_NCAM-1_like First immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-1 and similar proteins. Ig1_NCAM-1 like: first immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-1. NCAM-1 plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM), and heterophilic (NCAM-nonNCAM), interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves the Ig1, Ig2, and Ig3 domains. By this model, Ig1 and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM molecules expressed on the s
Probab=99.46 E-value=7e-13 Score=91.63 Aligned_cols=79 Identities=25% Similarity=0.559 Sum_probs=55.0
Q ss_pred CCCCCeEEEEEeeecCCCCCeEEEEe-CCeeCCCCCCceeeecCCCeeeEEEcccCCCCCeEEEEEEEecc-cceeeEEE
Q psy15667 205 LPEGARTRVICGVTHGDPPLTIRWLK-DGKPLSPRFPVNVSDLDSFSSLLSINSVSAAHSGEYTCVASNTA-AQARYSSK 282 (286)
Q Consensus 205 ~~~g~~~~l~c~~~~~~p~~~~~W~~-~g~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~N~~-g~~~~~~~ 282 (286)
+..|+.+.|.|.+. |.| +.+.|++ ++..+....++.+.........|.|.+++.+|+|.|+|.|.|.. +....++.
T Consensus 12 v~~G~~~~l~C~~~-G~p-~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~A~N~~g~~~~~sv~ 89 (92)
T cd04977 12 ISVGESKFFLCQVI-GEP-KDISWFSPNGEKLVTQQQISVVQNDDVRSTLTIYNANIEDAGIYKCVATDAKGTESEATVN 89 (92)
T ss_pred ECCCCeEEEEEEeE-eeC-CeEEEECCCCCEeccCCCEEEEeCCCCEEEEEEecCCcccCEEEEEEEEcCCCCcceeEEE
Confidence 55677777777665 344 3788886 56555443333333323345689999999999999999999996 55677777
Q ss_pred EEE
Q psy15667 283 LQV 285 (286)
Q Consensus 283 L~V 285 (286)
|.|
T Consensus 90 l~~ 92 (92)
T cd04977 90 LKI 92 (92)
T ss_pred EEC
Confidence 764
No 127
>cd05765 Ig_3 Subgroup of the immunoglobulin (Ig) superfamily. Ig_3: subgroup of the immunoglobulin (Ig) domain found in the Ig superfamily. The Ig superfamily is a heterogenous group of proteins, built on a common fold comprised of a sandwich of two beta sheets. Members of the Ig superfamily are components of immunoglobulin, neuroglia, cell surface glycoproteins, such as T-cell receptors, CD2, CD4, CD8, and membrane glycoproteins, such as butyrophilin and chondroitin sulfate proteoglycan core protein. A predominant feature of most Ig domains is a disulfide bridge connecting the two beta-sheets with a tryptophan residue packed against the disulfide bond.
Probab=99.45 E-value=4.5e-13 Score=90.42 Aligned_cols=36 Identities=31% Similarity=0.411 Sum_probs=33.7
Q ss_pred eeeEEEcccCCCCCeEEEEEEEecccceeeEEEEEE
Q psy15667 250 SSLLSINSVSAAHSGEYTCVASNTAAQARYSSKLQV 285 (286)
Q Consensus 250 ~~~L~i~~v~~~d~G~Y~C~a~N~~g~~~~~~~L~V 285 (286)
...|.|.++..+|+|.|+|.|.|.+|.....+.|+|
T Consensus 46 ~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~~~~~l~v 81 (81)
T cd05765 46 IGQLVIYNAQPQDAGLYTCTARNSGGLLRANFPLSV 81 (81)
T ss_pred ccEEEEccCCcccCEEEEEEEecCCceEEEEEEEeC
Confidence 357999999999999999999999999999999986
No 128
>cd05856 Ig2_FGFRL1-like Second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor_like-1(FGFRL1). Ig2_FGFRL1-like: second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor_like-1(FGFRL1). FGFRL1 is comprised of a signal peptide, three extracellular Ig-like modules, a transmembrane segment, and a short intracellular domain. FGFRL1 is expressed preferentially in skeletal tissues. Similar to FGF receptors, the expressed protein interacts specifically with heparin and with FGF2. FGFRL1 does not have a protein tyrosine kinase domain at its C terminus; neither does its cytoplasmic domain appear to interact with a signaling partner. It has been suggested that FGFRL1 may not have any direct signaling function, but instead acts as a decoy receptor trapping FGFs and preventing them from binding other receptors.
Probab=99.45 E-value=4.5e-13 Score=90.63 Aligned_cols=73 Identities=34% Similarity=0.560 Sum_probs=58.0
Q ss_pred ccccCCCcEEEEEEeecCCCCeeEEeeCCEEcCCCCeeEeceEEecccceeEEEEEcccccCCCeEEEEEEEcCCEEEEE
Q psy15667 12 QTLQPGPAVSLKCIASGNPTPDIGWTLDGFELPTNNRFVIGQFVSGHGDVISHVNISHVTVEDGGEYACVAENRAGTCEI 91 (286)
Q Consensus 12 ~~~~~G~~~~l~C~~~g~p~p~v~W~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~I~~~~~~D~G~Y~C~a~n~~g~~~~ 91 (286)
..+..|+++.|.|.+.|.|.|.+.|++++..+......... .. ...|.|.++..+|+|.|+|.|.|..|..+.
T Consensus 4 ~~~~~G~~v~L~C~~~g~p~p~i~W~k~~~~~~~~~~~~~~-----~~--~~~L~i~~v~~~D~G~Y~C~a~N~~G~~~~ 76 (82)
T cd05856 4 IARPVGSSVRLKCVASGNPRPDITWLKDNKPLTPTEIGESR-----KK--KWTLSLKNLKPEDSGKYTCHVSNRAGEINA 76 (82)
T ss_pred eeccCCCeEEEEEEeeEeCCCcEEEEECCcCCcCCccceec-----Cc--eEEEEEccCChhhCEEEEEEEEcCCccEEE
Confidence 35678999999999999999999999999887654332110 11 135899999999999999999999987543
No 129
>cd05848 Ig1_Contactin-5 First Ig domain of contactin-5. Ig1_Contactin-5: First Ig domain of the neural cell adhesion molecule contactin-5. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains, anchored to the membrane by glycosylphosphatidylinositol. The different contactins show different expression patterns in the central nervous system. In rats, a lack of contactin-5 (NB-2) results in an impairment of the neuronal activity in the auditory system. Contactin-5 is expressed specifically in the postnatal nervous system, peaking at about 3 weeks postnatal. Contactin-5 is highly expressed in the adult human brain in the occipital lobe and in the amygdala; lower levels of expression have been detected in the corpus callosum, caudate nucleus, and spinal cord.
Probab=99.45 E-value=1e-12 Score=91.10 Aligned_cols=69 Identities=26% Similarity=0.483 Sum_probs=52.5
Q ss_pred CCCeEEEEEeeecCCCCCeEEEEeCCeeCCCCCCceeeecCCCeeeEEEcccC-CCCCeEEEEEEEecccceee
Q psy15667 207 EGARTRVICGVTHGDPPLTIRWLKDGKPLSPRFPVNVSDLDSFSSLLSINSVS-AAHSGEYTCVASNTAAQARY 279 (286)
Q Consensus 207 ~g~~~~l~c~~~~~~p~~~~~W~~~g~~~~~~~~~~~~~~~~~~~~L~i~~v~-~~d~G~Y~C~a~N~~g~~~~ 279 (286)
+|+.+.|.|.+. |.|.|.++|+|+|..+.......+... .+.|.|.++. .+|+|.|+|.|.|.+|...+
T Consensus 18 ~g~~v~l~C~~~-G~P~P~i~W~k~g~~l~~~~~~~~~~~---~g~L~i~~~~~~~D~G~Y~C~A~N~~G~~~S 87 (94)
T cd05848 18 DEKKVILNCEAR-GNPVPTYRWLRNGTEIDTESDYRYSLI---DGNLIISNPSEVKDSGRYQCLATNSIGSILS 87 (94)
T ss_pred CCCEEEEEEEee-ecCCCEEEEEECCeECccCCCceEEee---CCeEEEccCCccCcCEEEEEEEEcCCCeEEe
Confidence 467888888864 788899999999998864433222221 3468898875 69999999999999998754
No 130
>cd05895 Ig_Pro_neuregulin-1 Immunoglobulin (Ig)-like domain found in neuregulin (NRG)-1. Ig_Pro_neuregulin-1: immunoglobulin (Ig)-like domain found in neuregulin (NRG)-1. There are many NRG-1 isoforms which arise from the alternative splicing of mRNA. NRG-1 belongs to the neuregulin gene family, which is comprised of four genes. This group represents NRG-1. NRGs are signaling molecules, which participate in cell-cell interactions in the nervous system, breast, and heart, and other organ systems, and are implicated in the pathology of diseases including schizophrenia, multiple sclerosis, and breast cancer. The NRG-1 protein binds to and activates the tyrosine kinases receptors ErbB3 and ErbB4, initiating signaling cascades. NRG-1 has multiple functions; for example, in the brain it regulates various processes such as radial glia formation and neuronal migration, dendritic development, and expression of neurotransmitters receptors; in the peripheral nervous system NRG-1 regulates process
Probab=99.44 E-value=9.5e-13 Score=87.66 Aligned_cols=71 Identities=25% Similarity=0.478 Sum_probs=53.7
Q ss_pred EEEEeeecCCCCCeEEEEeCCeeCCCCC--Cceee-ecCCCeeeEEEcccCCCCCeEEEEEEEecccceeeEEE
Q psy15667 212 RVICGVTHGDPPLTIRWLKDGKPLSPRF--PVNVS-DLDSFSSLLSINSVSAAHSGEYTCVASNTAAQARYSSK 282 (286)
Q Consensus 212 ~l~c~~~~~~p~~~~~W~~~g~~~~~~~--~~~~~-~~~~~~~~L~i~~v~~~d~G~Y~C~a~N~~g~~~~~~~ 282 (286)
.|.|.+..+.|.+.+.|+|+|+.+.... ...+. ........|.|.++..+|+|.|+|.|.|..|....++.
T Consensus 2 ~L~C~a~~~~p~~~~~W~~~g~~i~~~~~~~~~~~~~~~~~~~~L~I~~~~~~DsG~Y~C~a~N~~g~~~~~~~ 75 (76)
T cd05895 2 VLRCETVSEYPSLRFKWFKNGKEIGAKNKPDNKIKIRKKKKSSELQISKASLADNGEYKCMVSSKLGNDSVTAN 75 (76)
T ss_pred EEEEecccCCCCCceEEEECCcccccCCCCCceEEEEeCCcEEEEEECcCCcccCEEEEEEEEeCCCceeEEEe
Confidence 5788876667888999999999885332 11111 11223467999999999999999999999998887764
No 131
>cd05738 Ig2_RPTP_IIa_LAR_like Second immunoglobulin (Ig)-like domain of the receptor protein tyrosine phosphatase (RPTP)-F, also known as LAR. Ig2_RPTP_IIa_LAR_like: domain similar to the second immunoglobulin (Ig)-like domain found in the receptor protein tyrosine phosphatase (RPTP)-F, also known as LAR. LAR belongs to the RPTP type IIa subfamily. Members of this subfamily are cell adhesion molecule-like proteins involved in central nervous system (CNS) development. They have large extracellular portions, comprised of multiple Ig-like domains and two to nine fibronectin type III (FNIII) domains, and a cytoplasmic portion having two tandem phosphatase domains.
Probab=99.44 E-value=5.2e-13 Score=88.38 Aligned_cols=62 Identities=39% Similarity=0.663 Sum_probs=50.5
Q ss_pred EEEEEEeecCCCCeeEEeeCCEEcC--CCCeeEeceEEecccceeEEEEEcccccCCCeEEEEEEEcCCEEE
Q psy15667 20 VSLKCIASGNPTPDIGWTLDGFELP--TNNRFVIGQFVSGHGDVISHVNISHVTVEDGGEYACVAENRAGTC 89 (286)
Q Consensus 20 ~~l~C~~~g~p~p~v~W~~~~~~l~--~~~~~~~~~~~~~~~~~~~~l~I~~~~~~D~G~Y~C~a~n~~g~~ 89 (286)
++|.|.+.|+|.|.+.|+||+.++. .+.++... ..+ .|.|.+++.+|+|.|+|.|.|..|..
T Consensus 1 a~l~C~~~G~P~p~v~W~k~~~~~~~~~~~~~~~~----~~g----~L~i~~~~~~D~G~Y~C~a~N~~G~~ 64 (74)
T cd05738 1 ATMLCAASGNPDPEITWFKDFLPVDTTSNGRIKQL----RSG----ALQIENSEESDQGKYECVATNSAGTR 64 (74)
T ss_pred CEEEEEEeEecCCEEEEEECCEECccCCCCCEEEc----CCc----EEEECCCChhhCEEEEEEEECCCCce
Confidence 4799999999999999999999886 34454321 111 38899999999999999999998864
No 132
>cd07702 Ig2_VEGFR-1 Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 1 (VEGFR-1). Ig2_VEGFR-1: Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 1 (VEGFR-1). VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. VEGFRs bind VEGFs with high affinity at the Ig-like domains. VEGFR-1 binds VEGF-A strongly; VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGFR-1 may play an inhibitory rolet in the function of VEGFR-2 by binding VEGF-A and interfering with its interaction with VEGFR-2. VEGFR-1 has a signaling role in mediating monocyte chemotaxis and may mediate a chemotactic and a survival signal in hematopoietic stem cells or leukemia cells.
Probab=99.43 E-value=3.9e-13 Score=87.74 Aligned_cols=58 Identities=26% Similarity=0.456 Sum_probs=47.7
Q ss_pred EEEEEEeecCCCCeeEEeeCCEEcCCC-CeeEeceEEecccceeEEEEEcccccCCCeEEEEEEEcCC
Q psy15667 20 VSLKCIASGNPTPDIGWTLDGFELPTN-NRFVIGQFVSGHGDVISHVNISHVTVEDGGEYACVAENRA 86 (286)
Q Consensus 20 ~~l~C~~~g~p~p~v~W~~~~~~l~~~-~~~~~~~~~~~~~~~~~~l~I~~~~~~D~G~Y~C~a~n~~ 86 (286)
+.|.|.+.|.|.|++.|+|||.++..+ .++.. .+. .|.|.+++.+|+|.|+|.|.|..
T Consensus 1 ~~l~c~v~g~P~P~v~W~kdg~~l~~~~~~~~~------~~~---~L~I~~v~~~D~G~YtC~a~~~~ 59 (72)
T cd07702 1 YRLTPKVKAFPAPEVIWLKDGLPAAEKCSRYHV------DGY---SLVIKDVTEEDAGIYTILLGIKQ 59 (72)
T ss_pred CeEEeeEEEcCCCeEEEEECCEECCCCCcEEEe------CCC---EEEECcCCHHHCEEEEEEEEccc
Confidence 368999999999999999999998754 34322 221 48999999999999999999974
No 133
>cd05756 Ig1_IL1R_like First immunoglobulin (Ig)-like domain of interleukin-1 receptor (IL1R) and similar proteins. Ig1_IL1R_like: domain similar to the first immunoglobulin (Ig)-like domain of interleukin-1 receptor (IL1R). IL-1 alpha and IL-1 beta are cytokines which participate in the regulation of inflammation, immune responses, and hematopoiesis. These cytokines bind to the IL-1 receptor type 1 (IL1R1), which is activated on additional association with an accessory protein, IL1RAP. IL-1 also binds a second receptor designated type II (IL1R2). Mature IL1R1 consists of three Ig-like domains, a transmembrane domain, and a large cytoplasmic domain. Mature IL1R2 is organized similarly except that it has a short cytoplasmic domain. The latter does not initiate signal transduction. A naturally occurring cytokine IL-1RA (IL-1 receptor antagonist) is widely expressed and binds to IL-1 receptors, inhibiting the binding of IL-1 alpha and IL-1 beta.
Probab=99.43 E-value=6.7e-13 Score=91.86 Aligned_cols=78 Identities=24% Similarity=0.345 Sum_probs=56.0
Q ss_pred CCCCCeEEEEEeeecC----CCCCeEEEEeCCeeCCCC--CCceeeecCCCeeeEEEcccCCCCCeEEEEEEEeccccee
Q psy15667 205 LPEGARTRVICGVTHG----DPPLTIRWLKDGKPLSPR--FPVNVSDLDSFSSLLSINSVSAAHSGEYTCVASNTAAQAR 278 (286)
Q Consensus 205 ~~~g~~~~l~c~~~~~----~p~~~~~W~~~g~~~~~~--~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~N~~g~~~ 278 (286)
+.+|+.+.|.|.+... .|.+.+.|+|++..+... ....+.. ....|.|.++..+|+|.|+|.+.|..|..+
T Consensus 11 v~~G~~~~L~C~~~g~~~~~~p~~~v~Wyk~~~~~~~~~~~~~r~~~---~~~~L~I~~~~~~DsG~Y~C~~~N~~g~~~ 87 (94)
T cd05756 11 VLEGEPVVIKCPLFYSYIAQSPGLNLTWYKSDGKTPIPTEERSRMHQ---QKDLLWFLPAALEDSGLYTCVVRNSTYCMK 87 (94)
T ss_pred EecCCCeEEECCCCCcccccCCCceEEEEEcCCCCcccccccceeee---cCCeEEEccCCcccCeEEEEEEcCCCccEE
Confidence 3456666666655432 567889999998754321 1111211 145799999999999999999999999999
Q ss_pred eEEEEEE
Q psy15667 279 YSSKLQV 285 (286)
Q Consensus 279 ~~~~L~V 285 (286)
.++.|+|
T Consensus 88 ~~~~L~v 94 (94)
T cd05756 88 VSISLTV 94 (94)
T ss_pred EEEEEEC
Confidence 9999876
No 134
>cd05725 Ig3_Robo Third immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Ig3_Robo: domain similar to the third immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit responsiveness, antagoni
Probab=99.43 E-value=6e-13 Score=86.84 Aligned_cols=63 Identities=37% Similarity=0.651 Sum_probs=50.6
Q ss_pred EEEEEEeecCCCCeeEEeeCCEEcCCCCeeEeceEEecccceeEEEEEcccccCCCeEEEEEEEcCCEEEEE
Q psy15667 20 VSLKCIASGNPTPDIGWTLDGFELPTNNRFVIGQFVSGHGDVISHVNISHVTVEDGGEYACVAENRAGTCEI 91 (286)
Q Consensus 20 ~~l~C~~~g~p~p~v~W~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~I~~~~~~D~G~Y~C~a~n~~g~~~~ 91 (286)
++|.|.+.|.|.|.+.|+|++..++.+ ++.+. .+ ..|.|.+++.+|+|.|+|.|.|..|....
T Consensus 1 v~l~C~~~g~P~p~v~W~k~~~~~~~~-~~~~~-----~~---~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~ 63 (69)
T cd05725 1 VEFQCEVGGDPVPTVLWRKEDGELPKG-RAEIL-----DD---KSLKIRNVTAGDEGSYTCEAENMVGKIEA 63 (69)
T ss_pred CEEEEECccCCCCEEEEEECCccCCCC-cEEEe-----eC---CEEEECcCChhHCEEEEEEEEcCCCcEEE
Confidence 579999999999999999998877543 33221 11 14899999999999999999999887653
No 135
>cd05873 Ig_Sema4D_like Immunoglobulin (Ig)-like domain of the class IV semaphorin Sema4D. Ig_Sema4D_like; Immunoglobulin (Ig)-like domain of Sema4D. Sema4D is a Class IV semaphorin. Semaphorins are classified based on structural features additional to the Sema domain. Sema4D has extracellular Sema and Ig domains, a transmembrane domain, and a short cytoplasmic domain. Sema4D plays a part in the development of GABAergic synapses. Sema4D in addition is an immune semaphorin. It is abundant on resting T cells; its expression is weak on resting B cells and antigen presenting cells (APCs), but is upregulated by various stimuli. The receptor used by Sema4D in the immune system is CD72. Sem4D enhances the activation of B cells and DCs through binding CD72, perhaps by reducing CD72s inhibitory signals. The receptor used by Sema4D in the non-lymphatic tissues is plexin-B1. Sem4D is anchored to the cell surface but its extracellular domain can be released from the cell surface by a metalloproteas
Probab=99.43 E-value=5.3e-13 Score=90.33 Aligned_cols=69 Identities=20% Similarity=0.460 Sum_probs=56.2
Q ss_pred ccccccccCCCcEEEEEEeecCCCCeeEEeeCCEEcCCC-CeeEeceEEecccceeEEEEEcccccCCCeEEEEEEEcCC
Q psy15667 8 SFIEQTLQPGPAVSLKCIASGNPTPDIGWTLDGFELPTN-NRFVIGQFVSGHGDVISHVNISHVTVEDGGEYACVAENRA 86 (286)
Q Consensus 8 ~~~~~~~~~G~~~~l~C~~~g~p~p~v~W~~~~~~l~~~-~~~~~~~~~~~~~~~~~~l~I~~~~~~D~G~Y~C~a~n~~ 86 (286)
.|.++++.+|+++.|.|.+.+ |.+++.|++||.+|..+ .++.+. .+ .|.|.+++.+|+|.|+|.|.+..
T Consensus 2 ~P~~~~v~~G~~v~L~C~~~~-~~~~i~W~~ng~~i~~~~~r~~~~-----~~----~L~I~nv~~~DsG~Y~C~a~e~~ 71 (87)
T cd05873 2 DPRQRTFKLGNNAELKCSPKS-NLARVVWKFDGKVLTPESAKYLLY-----RD----GLLIFNASEADAGRYQCLSVEKS 71 (87)
T ss_pred CcceEEEECCCCEEEEEECCC-CCCeEEEEECCEECCCCCceEEEE-----CC----cEEEeCCCHHHCEEEEEEEEecc
Confidence 366789999999999999865 67899999999999765 454331 22 37899999999999999998863
No 136
>cd05773 Ig8_hNephrin_like Eighth immunoglobulin-like domain of nephrin. Ig8_hNephrin_like: domain similar to the eighth immunoglobulin-like domain in human nephrin. Nephrin is an integral component of the slit diaphragm, and is a central component of the glomerular ultrafilter. Nephrin plays a structural role, and has a role in signaling. Nephrin is a transmembrane protein having a short intracellular portion, and an extracellular portion comprised of eight Ig-like domains, and one fibronectin type III-like domain. The extracellular portions of nephrin, from neighboring foot processes of separate podocyte cells, may interact with each other, and in association with other components of the slit diaphragm, form a porous molecular sieve within the slit pore. The intracellular portion of nephrin is associated with linker proteins, which connect nephrin to the actin cytoskeleton. The intracellular portion is tyrosine phosphorylated, and mediates signaling from the slit diaphragm into the p
Probab=99.42 E-value=2.5e-12 Score=91.73 Aligned_cols=79 Identities=25% Similarity=0.441 Sum_probs=60.8
Q ss_pred CCCeEEEEEeeecCCCCCeEEEEeCCeeCCCCC-Cceeeec---CCCeeeEEEcccC-CCCCeEEEEEEEecccceeeEE
Q psy15667 207 EGARTRVICGVTHGDPPLTIRWLKDGKPLSPRF-PVNVSDL---DSFSSLLSINSVS-AAHSGEYTCVASNTAAQARYSS 281 (286)
Q Consensus 207 ~g~~~~l~c~~~~~~p~~~~~W~~~g~~~~~~~-~~~~~~~---~~~~~~L~i~~v~-~~d~G~Y~C~a~N~~g~~~~~~ 281 (286)
.|..+.|.|.+. |.|++.+.|+|+|..+.... ++.+... ....+.|.|.++. .+|.|.|+|.|.|.+|....++
T Consensus 22 ~g~~v~L~C~a~-G~P~p~i~W~k~g~~l~~~~~r~~~~~~~~~~~~~s~L~I~~v~~~~D~G~Y~C~A~N~~G~~~~~i 100 (109)
T cd05773 22 GSSDANLVCQAQ-GVPRVQFRWAKNGVPLDLGNPRYEETTEHTGTVHTSILTIINVSAALDYALFTCTAHNSLGEDSLDI 100 (109)
T ss_pred CCCEEEEEEECc-ccCCCEEEEEECCEECCCCCCeEEEEeeccCccceeEEEECcCCccCCCEEEEEEEEeCCccCcEEE
Confidence 467788888875 78889999999999885432 3332221 1224689999997 6999999999999999999999
Q ss_pred EEEEC
Q psy15667 282 KLQVK 286 (286)
Q Consensus 282 ~L~V~ 286 (286)
.|.|.
T Consensus 101 ~L~~~ 105 (109)
T cd05773 101 QLVST 105 (109)
T ss_pred EEEec
Confidence 99873
No 137
>cd05750 Ig_Pro_neuregulin Immunoglobulin (Ig)-like domain in neuregulins (NRGs). Ig_Pro_neuregulin: immunoglobulin (Ig)-like domain in neuregulins (NRGs). NRGs are signaling molecules, which participate in cell-cell interactions in the nervous system, breast, heart, and other organ systems, and are implicated in the pathology of diseases including schizophrenia, multiple sclerosis, and breast cancer. There are four members of the neuregulin gene family (NRG1, -2, -3, and -4). The NRG-1 protein, binds to and activates the tyrosine kinases receptors ErbB3 and ErbB4, initiating signaling cascades. The other NRGs proteins bind one or the other or both of these ErbBs. NRG-1 has multiple functions; for example, in the brain it regulates various processes such as radial glia formation and neuronal migration, dendritic development, and expression of neurotransmitters receptors; in the peripheral nervous system NRG-1 regulates processes such as target cell differentiation, and Schwann cell surv
Probab=99.42 E-value=1.1e-12 Score=87.13 Aligned_cols=70 Identities=31% Similarity=0.501 Sum_probs=53.2
Q ss_pred EEEEEEeec-CCCCeeEEeeCCEEcCCCCeeEeceEEecccceeEEEEEcccccCCCeEEEEEEEcCCEEEEE
Q psy15667 20 VSLKCIASG-NPTPDIGWTLDGFELPTNNRFVIGQFVSGHGDVISHVNISHVTVEDGGEYACVAENRAGTCEI 91 (286)
Q Consensus 20 ~~l~C~~~g-~p~p~v~W~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~I~~~~~~D~G~Y~C~a~n~~g~~~~ 91 (286)
++|.|.+.| .|.|.+.|+|||.++....+...... . .......|.|.++..+|+|.|+|.|.|..|....
T Consensus 1 ~~l~C~~~g~~P~p~~~W~k~g~~l~~~~~~~~~~~-~-~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~~ 71 (75)
T cd05750 1 LVLKCEATSEYPSLRFKWFKDGKELNRKNKPRNIKI-R-NKKKNSELQINKAKLADSGEYTCVVENILGNDTV 71 (75)
T ss_pred CEEEEEccCCCCCceEEEEcCCeeccccCCcceEEE-E-ecCceEEEEEccCCcccCeEEEEEEEEcCCceeE
Confidence 479999999 99999999999999876544321011 1 1112246999999999999999999999987654
No 138
>cd05854 Ig6_Contactin-2 Sixth Ig domain of contactin-2. Ig6_Contactin-2: Sixth Ig domain of the neural cell adhesion molecule contactin-2-like. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-2 (TAG-1, axonin-1) facilitates cell adhesion by homophilic binding between molecules in apposed membranes. It may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module by contacts between IG domains 1 and 4, and domains 2 and 3. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-2 is also expressed in retinal amacrine cells in the developing c
Probab=99.42 E-value=1.1e-12 Score=89.14 Aligned_cols=70 Identities=23% Similarity=0.484 Sum_probs=52.6
Q ss_pred CcEEEEEEeecCCCC--eeEEeeCCEEcCCC---CeeEeceEEecccceeEEEEEcccccCCCeEEEEEEEcCCEEEEE
Q psy15667 18 PAVSLKCIASGNPTP--DIGWTLDGFELPTN---NRFVIGQFVSGHGDVISHVNISHVTVEDGGEYACVAENRAGTCEI 91 (286)
Q Consensus 18 ~~~~l~C~~~g~p~p--~v~W~~~~~~l~~~---~~~~~~~~~~~~~~~~~~l~I~~~~~~D~G~Y~C~a~n~~g~~~~ 91 (286)
+++.|.|.+.|+|.| .+.|++||.+|..+ .++... .... ....|.|.+++..|+|.|+|.|.|..|..+.
T Consensus 1 ~~~~L~C~a~g~P~p~~~v~W~~~g~~i~~~~~~~~~~~~---~~~~-~~~~L~I~~v~~~D~G~YtC~A~n~~g~~~~ 75 (85)
T cd05854 1 ENLTLQCHASHDPTMDLTFTWSLDDFPIDLDKPNGHYRRM---EVKE-TIGDLVIVNAQLSHAGTYTCTAQTVVDSASA 75 (85)
T ss_pred CcEEEEEEEecCCCCCeEEEEEECCeEccccCCCCcEEEE---Eecc-eEeEEEEccCChhhCeEEEEEEecCCCCEEE
Confidence 578999999999988 57999999988642 233110 1111 1235999999999999999999999886643
No 139
>cd05764 Ig_2 Subgroup of the immunoglobulin (Ig) superfamily. Ig_2: subgroup of the immunoglobulin (Ig) domain found in the Ig superfamily. The Ig superfamily is a heterogenous group of proteins, built on a common fold comprised of a sandwich of two beta sheets. Members of the Ig superfamily are components of immunoglobulin, neuroglia, cell surface glycoproteins, such as T-cell receptors, CD2, CD4, CD8, and membrane glycoproteins, such as butyrophilin and chondroitin sulfate proteoglycan core protein. A predominant feature of most Ig domains is a disulfide bridge connecting the two beta-sheets with a tryptophan residue packed against the disulfide bond.
Probab=99.41 E-value=1.5e-12 Score=86.18 Aligned_cols=67 Identities=34% Similarity=0.701 Sum_probs=53.8
Q ss_pred CCcEEEEEEeecCCCCeeEEee-CCEEcCCCCeeEeceEEecccceeEEEEEcccccCCCeEEEEEEEcCCEEEEE
Q psy15667 17 GPAVSLKCIASGNPTPDIGWTL-DGFELPTNNRFVIGQFVSGHGDVISHVNISHVTVEDGGEYACVAENRAGTCEI 91 (286)
Q Consensus 17 G~~~~l~C~~~g~p~p~v~W~~-~~~~l~~~~~~~~~~~~~~~~~~~~~l~I~~~~~~D~G~Y~C~a~n~~g~~~~ 91 (286)
|+.+.|.|.+.|.|.|.+.|++ ++..+....++... ..+ .|.|.++..+|+|.|+|.|.|..|..+.
T Consensus 1 G~~~~l~C~~~g~P~p~v~W~~~~~~~~~~~~~~~~~----~~~----~L~i~~~~~~D~G~Y~C~a~N~~G~~~~ 68 (74)
T cd05764 1 GQRATLRCKARGDPEPAIHWISPDGKLISNSSRTLVY----DNG----TLDILITTVKDTGSFTCIASNAAGEATA 68 (74)
T ss_pred CCeEEEEEEccCcCCCEEEEEeCCCEEecCCCeEEEe----cCC----EEEEEECChhhCEEEEEEEECCCCeEEE
Confidence 7899999999999999999997 67666655554321 111 4889999999999999999999987654
No 140
>cd05722 Ig1_Neogenin First immunoglobulin (Ig)-like domain in neogenin and similar proteins. Ig1_Neogenin: first immunoglobulin (Ig)-like domain in neogenin and related proteins. Neogenin is a cell surface protein which is expressed in the developing nervous system of vertebrate embryos in the growing nerve cells. It is also expressed in other embryonic tissues, and may play a general role in developmental processes such as cell migration, cell-cell recognition, and tissue growth regulation. Included in this group is the tumor suppressor protein DCC, which is deleted in colorectal carcinoma . DCC and neogenin each have four Ig-like domains followed by six fibronectin type III domains, a transmembrane domain, and an intracellular domain.
Probab=99.40 E-value=2.5e-12 Score=89.53 Aligned_cols=78 Identities=31% Similarity=0.486 Sum_probs=54.9
Q ss_pred CCCCCeEEEEEeeecCCCCCeEEEEeCCeeCCCCCCceeeecCCCeeeEEEccc-----CCCCCeEEEEEEEec-ccce-
Q psy15667 205 LPEGARTRVICGVTHGDPPLTIRWLKDGKPLSPRFPVNVSDLDSFSSLLSINSV-----SAAHSGEYTCVASNT-AAQA- 277 (286)
Q Consensus 205 ~~~g~~~~l~c~~~~~~p~~~~~W~~~g~~~~~~~~~~~~~~~~~~~~L~i~~v-----~~~d~G~Y~C~a~N~-~g~~- 277 (286)
+.+|+.+.|.|.+. |.|.|.+.|+|+|..+............ .+.|.|.++ ..+|+|.|+|.|.|. .|..
T Consensus 11 ~~~g~~v~l~C~v~-g~P~p~i~W~k~g~~l~~~~~~~~~~~~--~~~l~i~~v~~~~~~~~D~G~Y~C~a~N~~~G~~~ 87 (95)
T cd05722 11 AVRGGPVVLNCSAE-GEPPPKIEWKKDGVLLNLVSDERRQQLP--NGSLLITSVVHSKHNKPDEGFYQCVAQNDSLGSIV 87 (95)
T ss_pred EcCCCCEEEeeecc-cCCCCEEEEEECCeECccccCcceEEcc--CCeEEEeeeeccCCCCCcCEEEEEEEECCccCcEE
Confidence 44677777777764 6678899999999988654321111111 235667766 689999999999999 9977
Q ss_pred eeEEEEEE
Q psy15667 278 RYSSKLQV 285 (286)
Q Consensus 278 ~~~~~L~V 285 (286)
+..+.|.|
T Consensus 88 s~~~~l~v 95 (95)
T cd05722 88 SRTARLTV 95 (95)
T ss_pred EeeeEEeC
Confidence 55777765
No 141
>cd05898 Ig5_KIRREL3 Fifth immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 protein (also known as Neph2). Ig5_KIRREL3: the fifth immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 protein (also known as Neph2). This protein has five Ig-like domains, one transmembrane domain, and a cytoplasmic tail. Included in this group is mammalian Kirrel (Neph1). These proteins contain multiple Ig domains, have properties of cell adhesion molecules, and are important in organ development. Neph1 and 2 may mediate axonal guidance and synapse formation in certain areas of the CNS. In the kidney, they participate in the formation of the slit diaphragm.
Probab=99.40 E-value=3.1e-12 Score=88.54 Aligned_cols=87 Identities=26% Similarity=0.471 Sum_probs=68.5
Q ss_pred CCeeEeccccccccCCCcEEEEEEeecCCCC-eeEEeeCCEEcCC--CCeeEeceEEecccceeEEEEEcccccCC-CeE
Q psy15667 2 PPILTYSFIEQTLQPGPAVSLKCIASGNPTP-DIGWTLDGFELPT--NNRFVIGQFVSGHGDVISHVNISHVTVED-GGE 77 (286)
Q Consensus 2 ~p~~~~~~~~~~~~~G~~~~l~C~~~g~p~p-~v~W~~~~~~l~~--~~~~~~~~~~~~~~~~~~~l~I~~~~~~D-~G~ 77 (286)
||.| ...+.+.+.+|++++|.|.+.+.|+| .|.|..++..|.. +.+|.+.+... .++..+.|.|.++...| .|.
T Consensus 2 pP~i-~~~~s~~~~~G~~~~L~C~~~s~P~P~~i~W~w~~~~i~~~~~~r~~I~~~~~-~~g~~S~L~I~~~~~~d~~g~ 79 (98)
T cd05898 2 PPII-SSEQVQYAVRGERGKVKCFIGSTPPPDRIAWAWKENVLESGTSERYTVERTST-GSGVLSTLTINNIMEADFQTH 79 (98)
T ss_pred CCEE-ecCceEEEeCCCcEEEEEEEccCCCCcEEEEEEccccccCCCCCCEEEEEEcc-CCCcEEEEEECCCccccCCcE
Confidence 7888 57778889999999999999888887 5789988877754 46777654322 23455679999998877 799
Q ss_pred EEEEEEcCCEEEE
Q psy15667 78 YACVAENRAGTCE 90 (286)
Q Consensus 78 Y~C~a~n~~g~~~ 90 (286)
|.|.|.|..|.-.
T Consensus 80 Y~C~a~N~~G~d~ 92 (98)
T cd05898 80 YNCTAWNSFGSGT 92 (98)
T ss_pred EEEEEEeCCccce
Confidence 9999999988643
No 142
>cd05726 Ig4_Robo Fhird immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Ig4_Robo: domain similar to the fhird immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit responsiveness, antagoni
Probab=99.40 E-value=1.3e-12 Score=90.04 Aligned_cols=67 Identities=34% Similarity=0.649 Sum_probs=52.9
Q ss_pred CCcEEEEEEeecCCCCeeEEeeCCEEc--------CCCCeeEeceEEecccceeEEEEEcccccCCCeEEEEEEEcCCEE
Q psy15667 17 GPAVSLKCIASGNPTPDIGWTLDGFEL--------PTNNRFVIGQFVSGHGDVISHVNISHVTVEDGGEYACVAENRAGT 88 (286)
Q Consensus 17 G~~~~l~C~~~g~p~p~v~W~~~~~~l--------~~~~~~~~~~~~~~~~~~~~~l~I~~~~~~D~G~Y~C~a~n~~g~ 88 (286)
|++++|.|.+.|+|.|.+.|+|++..+ ....++.+. ..+ .|.|.+++.+|+|.|+|.|.|..|.
T Consensus 1 G~~v~L~C~~~g~P~p~v~W~k~g~~~~~~~~~~~~~~~r~~v~----~~~----~L~I~~v~~~D~G~Y~C~a~N~~G~ 72 (90)
T cd05726 1 GRTVTFQCEATGNPQPAIFWQKEGSQNLLFSYQPPQSSSRFSVS----QTG----DLTITNVQRSDVGYYICQTLNVAGS 72 (90)
T ss_pred CCEEEEEEECCccCCCEEEEEeCCCcceeecccCCCCCCeEEEC----CCC----eEEEeeCChhhCEEEEEEEEcCCCc
Confidence 789999999999999999999998653 123344321 111 4899999999999999999999887
Q ss_pred EEE
Q psy15667 89 CEI 91 (286)
Q Consensus 89 ~~~ 91 (286)
...
T Consensus 73 ~~~ 75 (90)
T cd05726 73 ILT 75 (90)
T ss_pred eEE
Confidence 643
No 143
>cd05733 Ig6_L1-CAM_like Sixth immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM) and similar proteins. Ig6_L1-CAM_like: domain similar to the sixth immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. This group also contains NrCAM [Ng(neuronglia)CAM-related cell adhesion molecule], which is primarily expressed in the nervous system, and human neurofascin.
Probab=99.40 E-value=2.1e-12 Score=86.14 Aligned_cols=66 Identities=30% Similarity=0.532 Sum_probs=48.6
Q ss_pred EEEEeeecCCCCCeEEEEeCCeeCCCCCCceeeecCCCeeeEEEcccCC----CCCeEEEEEEEecccceee
Q psy15667 212 RVICGVTHGDPPLTIRWLKDGKPLSPRFPVNVSDLDSFSSLLSINSVSA----AHSGEYTCVASNTAAQARY 279 (286)
Q Consensus 212 ~l~c~~~~~~p~~~~~W~~~g~~~~~~~~~~~~~~~~~~~~L~i~~v~~----~d~G~Y~C~a~N~~g~~~~ 279 (286)
.|.|.+. |.|.|+++|+|+|..+.......+... ...+.|.|..+.. +|+|.|+|.|.|.+|...+
T Consensus 2 ~l~C~~~-G~P~P~v~W~k~g~~l~~~~~~~~~~~-~~~g~L~i~~~~~~~~~~d~G~Y~C~A~N~~G~~~s 71 (77)
T cd05733 2 VIKCEAK-GNPPPTFSWTRNGTHFDPEKDPRVTMK-PDSGTLVIDNMNGGRAEDYEGEYQCYASNELGTAIS 71 (77)
T ss_pred EEEeeCc-ccCCCeEEEEECCeECCCCCCCCEEEe-CCCCEEEEeccCCCCCcCCCEEEEEEEEcCCCcEEc
Confidence 5778764 788999999999998754332222222 2256788988864 7999999999999997654
No 144
>cd05733 Ig6_L1-CAM_like Sixth immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM) and similar proteins. Ig6_L1-CAM_like: domain similar to the sixth immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. This group also contains NrCAM [Ng(neuronglia)CAM-related cell adhesion molecule], which is primarily expressed in the nervous system, and human neurofascin.
Probab=99.40 E-value=1.2e-12 Score=87.26 Aligned_cols=64 Identities=31% Similarity=0.631 Sum_probs=47.8
Q ss_pred EEEEEEeecCCCCeeEEeeCCEEcCCC--CeeEeceEEecccceeEEEEEcccc----cCCCeEEEEEEEcCCEEEE
Q psy15667 20 VSLKCIASGNPTPDIGWTLDGFELPTN--NRFVIGQFVSGHGDVISHVNISHVT----VEDGGEYACVAENRAGTCE 90 (286)
Q Consensus 20 ~~l~C~~~g~p~p~v~W~~~~~~l~~~--~~~~~~~~~~~~~~~~~~l~I~~~~----~~D~G~Y~C~a~n~~g~~~ 90 (286)
++|.|.+.|+|.|+|+|+|||..|... .++.. ....+ .|.|.++. .+|+|.|+|.|.|..|...
T Consensus 1 i~l~C~~~G~P~P~v~W~k~g~~l~~~~~~~~~~----~~~~g---~L~i~~~~~~~~~~d~G~Y~C~A~N~~G~~~ 70 (77)
T cd05733 1 IVIKCEAKGNPPPTFSWTRNGTHFDPEKDPRVTM----KPDSG---TLVIDNMNGGRAEDYEGEYQCYASNELGTAI 70 (77)
T ss_pred CEEEeeCcccCCCeEEEEECCeECCCCCCCCEEE----eCCCC---EEEEeccCCCCCcCCCEEEEEEEEcCCCcEE
Confidence 479999999999999999999988643 23321 11112 36677764 3789999999999998754
No 145
>cd05763 Ig_1 Subgroup of the immunoglobulin (Ig) superfamily. Ig_1: subgroup of the immunoglobulin (Ig) domain found in the Ig superfamily. The Ig superfamily is a heterogenous group of proteins, built on a common fold comprised of a sandwich of two beta sheets. Members of the Ig superfamily are components of immunoglobulin, neuroglia, cell surface glycoproteins, such as T-cell receptors, CD2, CD4, CD8, and membrane glycoproteins, such as butyrophilin and chondroitin sulfate proteoglycan core protein. A predominant feature of most Ig domains is a disulfide bridge connecting the two beta-sheets with a tryptophan residue packed against the disulfide bond.
Probab=99.40 E-value=1.2e-12 Score=86.88 Aligned_cols=65 Identities=38% Similarity=0.705 Sum_probs=49.1
Q ss_pred EEEEEEeecCCCCeeEEeeCCEEc-CC--CCeeEeceEEecccceeEEEEEcccccCCCeEEEEEEEcCCEEEEE
Q psy15667 20 VSLKCIASGNPTPDIGWTLDGFEL-PT--NNRFVIGQFVSGHGDVISHVNISHVTVEDGGEYACVAENRAGTCEI 91 (286)
Q Consensus 20 ~~l~C~~~g~p~p~v~W~~~~~~l-~~--~~~~~~~~~~~~~~~~~~~l~I~~~~~~D~G~Y~C~a~n~~g~~~~ 91 (286)
++|.|.+.|.|.|+++|+|++... +. ..++.+ ...+. .|.|.++..+|+|.|+|.|.|..|....
T Consensus 1 a~l~C~~~G~P~P~v~W~k~~~~~~~~~~~~~~~~----~~~~~---~L~I~~~~~~D~G~Y~C~A~N~~G~~~~ 68 (75)
T cd05763 1 ARLECAATGHPTPQIAWQKDGGTDFPAARERRMHV----MPEDD---VFFIVDVKIEDTGVYSCTAQNTAGSISA 68 (75)
T ss_pred CEeEeecccccCCEEEEEeCCCccCCcccccceEE----ecCCC---EEEEeeCCcccCEEEEEEEEcCCCEEEe
Confidence 479999999999999999998642 22 233322 11122 4889999999999999999999987643
No 146
>cd07702 Ig2_VEGFR-1 Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 1 (VEGFR-1). Ig2_VEGFR-1: Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 1 (VEGFR-1). VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. VEGFRs bind VEGFs with high affinity at the Ig-like domains. VEGFR-1 binds VEGF-A strongly; VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGFR-1 may play an inhibitory rolet in the function of VEGFR-2 by binding VEGF-A and interfering with its interaction with VEGFR-2. VEGFR-1 has a signaling role in mediating monocyte chemotaxis and may mediate a chemotactic and a survival signal in hematopoietic stem cells or leukemia cells.
Probab=99.39 E-value=1.9e-12 Score=84.48 Aligned_cols=67 Identities=24% Similarity=0.320 Sum_probs=49.3
Q ss_pred EEEEeeecCCCCCeEEEEeCCeeCCCCCCceeeecCCCeeeEEEcccCCCCCeEEEEEEEecccceeeEEEE
Q psy15667 212 RVICGVTHGDPPLTIRWLKDGKPLSPRFPVNVSDLDSFSSLLSINSVSAAHSGEYTCVASNTAAQARYSSKL 283 (286)
Q Consensus 212 ~l~c~~~~~~p~~~~~W~~~g~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~N~~g~~~~~~~L 283 (286)
.|.|.+. |.|+|.+.|+|+|.++..... .+.. . ...|.|.+++.+|+|.|+|.|.|..........+
T Consensus 2 ~l~c~v~-g~P~P~v~W~kdg~~l~~~~~-~~~~-~--~~~L~I~~v~~~D~G~YtC~a~~~~~~~~~~~~i 68 (72)
T cd07702 2 RLTPKVK-AFPAPEVIWLKDGLPAAEKCS-RYHV-D--GYSLVIKDVTEEDAGIYTILLGIKQYNLFKNLTI 68 (72)
T ss_pred eEEeeEE-EcCCCeEEEEECCEECCCCCc-EEEe-C--CCEEEECcCCHHHCEEEEEEEEccccceEeeEEE
Confidence 5677764 788899999999998865422 1111 1 3479999999999999999999987655444433
No 147
>cd07693 Ig1_Robo First immunoglobulin (Ig)-like domain in Robo (roundabout) receptors and similar proteins. Ig1_Robo: domain similar to the first immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit res
Probab=99.39 E-value=4.7e-12 Score=88.92 Aligned_cols=80 Identities=26% Similarity=0.502 Sum_probs=53.3
Q ss_pred CCCCCeEEEEEeeecCCCCCeEEEEeCCeeCCCC----CCceeeecCCCeeeEEE--cccCCCCCeEEEEEEEecccc-e
Q psy15667 205 LPEGARTRVICGVTHGDPPLTIRWLKDGKPLSPR----FPVNVSDLDSFSSLLSI--NSVSAAHSGEYTCVASNTAAQ-A 277 (286)
Q Consensus 205 ~~~g~~~~l~c~~~~~~p~~~~~W~~~g~~~~~~----~~~~~~~~~~~~~~L~i--~~v~~~d~G~Y~C~a~N~~g~-~ 277 (286)
+.+|+.+.|.|.+. |.|.|.+.|+|+|..+... ....+....+....+.| ..+..+|+|.|+|.|.|.+|. .
T Consensus 13 v~~G~~~~l~C~~~-g~P~p~i~W~k~g~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~D~G~Y~C~a~N~~G~~~ 91 (100)
T cd07693 13 VSKGDPATLNCKAE-GRPTPTIQWLKNGQPLETDKDDPRSHRIVLPSGSLFFLRVVHGRKGRSDEGVYVCVAHNSLGEAV 91 (100)
T ss_pred EcCCCeEEEEeeCC-cCCCCEEEEEECCEECccccCCCCcceEEecCCcEEEEEeeccCCCcCcCEEEEEEEEcccccee
Confidence 55777777777664 6788889999999887651 11111111111112222 234789999999999999998 7
Q ss_pred eeEEEEEE
Q psy15667 278 RYSSKLQV 285 (286)
Q Consensus 278 ~~~~~L~V 285 (286)
+..+.|.|
T Consensus 92 s~~~~l~v 99 (100)
T cd07693 92 SRNASLEV 99 (100)
T ss_pred cceEEEEe
Confidence 77887776
No 148
>cd05850 Ig1_Contactin-2 First Ig domain of contactin-2. Ig1_Contactin-2: First Ig domain of the neural cell adhesion molecule contactin-2-like. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-2 (TAG-1, axonin-1) facilitates cell adhesion by homophilic binding between molecules in apposed membranes. It may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module by contacts between IG domains 1 and 4, and domains 2 and 3. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-2 is also expressed in retinal amacrine cells in the developing c
Probab=99.39 E-value=4.8e-12 Score=87.82 Aligned_cols=73 Identities=23% Similarity=0.405 Sum_probs=53.4
Q ss_pred CCCeEEEEEeeecCCCCCeEEEEeCCeeCCCCCCceeeecCCCeeeEEEcccC-CCCCeEEEEEEEecccceee-EEEE
Q psy15667 207 EGARTRVICGVTHGDPPLTIRWLKDGKPLSPRFPVNVSDLDSFSSLLSINSVS-AAHSGEYTCVASNTAAQARY-SSKL 283 (286)
Q Consensus 207 ~g~~~~l~c~~~~~~p~~~~~W~~~g~~~~~~~~~~~~~~~~~~~~L~i~~v~-~~d~G~Y~C~a~N~~g~~~~-~~~L 283 (286)
.|+.+.|.|.+. |.|.|.++|+++|..+.......+... .+.|.|.++. .+|+|.|+|.|.|.+|...+ .+.|
T Consensus 18 ~g~~v~l~C~a~-g~P~p~i~W~~~g~~l~~~~~~~~~~~---~g~L~I~~~~~~~D~G~Y~C~A~N~~G~~~s~~a~l 92 (94)
T cd05850 18 PEEKVTLGCRAR-ASPPATYRWKMNGTEIKFAPESRYTLV---AGNLVINNPQKARDAGSYQCLAINRCGTVVSREANL 92 (94)
T ss_pred CCCeEEEEeEce-eCCCCEEEEEECCEECccCCCceEEEE---CCeEEEccCCccCcCEEEEEEEEcCcCcEEEEEEEE
Confidence 356788888874 788899999999998864322222221 3468887755 69999999999999997754 4444
No 149
>cd04974 Ig3_FGFR Third immunoglobulin (Ig)-like domain of fibroblast growth factor receptor (FGFR). Ig3_FGFR: third immunoglobulin (Ig)-like domain of fibroblast growth factor receptor (FGFR). Fibroblast growth factors (FGFs) participate in morphogenesis, development, angiogenesis, and wound healing. These FGF-stimulated processes are mediated by four FGFR tyrosine kinases (FGRF1-4). FGFRs are comprised of an extracellular portion consisting of three Ig-like domains, a transmembrane helix, and a cytoplasmic portion having protein tyrosine kinase activity. The highly conserved Ig-like domains 2 and 3, and the linker region between D2 and D3 define a general binding site for FGFs.
Probab=99.39 E-value=1.6e-12 Score=89.46 Aligned_cols=74 Identities=20% Similarity=0.474 Sum_probs=50.5
Q ss_pred CCcEEEEEEeecCCCCeeEEeeCC----EEcCCCCe-e-EeceE--EecccceeEEEEEcccccCCCeEEEEEEEcCCEE
Q psy15667 17 GPAVSLKCIASGNPTPDIGWTLDG----FELPTNNR-F-VIGQF--VSGHGDVISHVNISHVTVEDGGEYACVAENRAGT 88 (286)
Q Consensus 17 G~~~~l~C~~~g~p~p~v~W~~~~----~~l~~~~~-~-~~~~~--~~~~~~~~~~l~I~~~~~~D~G~Y~C~a~n~~g~ 88 (286)
|+.++|.|.+.|.|.|+|+|+|++ ..+..+.. + ..... .....+....|.|.+++.+|+|.|+|.|.|..|.
T Consensus 1 G~~v~l~C~v~g~P~P~i~W~k~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~A~N~~G~ 80 (90)
T cd04974 1 GSDVEFHCKVYSDAQPHIQWLKHVEVNGSKYGPDGLPYVTVLKVAGINTTDNESEVLYLRNVSFDDAGEYTCLAGNSIGP 80 (90)
T ss_pred CCcEEEEEEEeCCCCCeEEEEEecccCCceeCCCCCceEEEEEecCCcccccccceEEEeccccccCcEEEEEeecccCc
Confidence 789999999999999999999964 33322111 1 10000 0000011225889999999999999999999886
Q ss_pred EE
Q psy15667 89 CE 90 (286)
Q Consensus 89 ~~ 90 (286)
..
T Consensus 81 ~~ 82 (90)
T cd04974 81 SH 82 (90)
T ss_pred cc
Confidence 53
No 150
>cd05731 Ig3_L1-CAM_like Third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). Ig3_L1-CAM_like: domain similar to the third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. This group also contains the chicken neuron-glia cell adhesion molecule, Ng-CAM and human neurofascin.
Probab=99.39 E-value=1.2e-12 Score=85.98 Aligned_cols=64 Identities=39% Similarity=0.714 Sum_probs=50.5
Q ss_pred EEEEEEeecCCCCeeEEeeCCEEcCCCCeeEeceEEecccceeEEEEEcccccCCCeEEEEEEEcCCEEEEE
Q psy15667 20 VSLKCIASGNPTPDIGWTLDGFELPTNNRFVIGQFVSGHGDVISHVNISHVTVEDGGEYACVAENRAGTCEI 91 (286)
Q Consensus 20 ~~l~C~~~g~p~p~v~W~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~I~~~~~~D~G~Y~C~a~n~~g~~~~ 91 (286)
+.|.|.+.|.|.|.+.|++++..+..+. ... ...+ ..|.|.+++.+|+|.|+|.|.|..|..+.
T Consensus 1 v~l~C~~~g~P~p~v~W~k~~~~~~~~~-~~~----~~~~---~~L~i~~v~~~D~G~Y~C~a~N~~G~~~~ 64 (71)
T cd05731 1 LLLECIAEGLPTPEISWIKIGGELPADR-TKF----ENFN---KTLKIDNVSEEDDGEYRCTASNSLGSARH 64 (71)
T ss_pred CEEEEEeeEecCCeEEEEECCeECCCCc-eeE----ecCC---CEEEECCCCHHHCEEEEEEEEeCCceEEE
Confidence 4799999999999999999998876432 211 1111 25899999999999999999999987643
No 151
>cd05849 Ig1_Contactin-1 First Ig domain of contactin-1. Ig1_Contactin-1: First Ig domain of the neural cell adhesion molecule contactin-1. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-1 is differentially expressed in tumor tissues and may, through a RhoA mechanism, facilitate invasion and metastasis of human lung adenocarcinoma.
Probab=99.39 E-value=4.1e-12 Score=87.82 Aligned_cols=70 Identities=21% Similarity=0.394 Sum_probs=53.2
Q ss_pred CCeEEEEEeeecCCCCCeEEEEeCCeeCCCC-CCceeeecCCCeeeEEEcccC-CCCCeEEEEEEEecccceee-EEEE
Q psy15667 208 GARTRVICGVTHGDPPLTIRWLKDGKPLSPR-FPVNVSDLDSFSSLLSINSVS-AAHSGEYTCVASNTAAQARY-SSKL 283 (286)
Q Consensus 208 g~~~~l~c~~~~~~p~~~~~W~~~g~~~~~~-~~~~~~~~~~~~~~L~i~~v~-~~d~G~Y~C~a~N~~g~~~~-~~~L 283 (286)
|..+.|.|.+. |.|.|.++|+|++..+... .++.+ . ++.|.|.++. .+|+|.|+|.|.|.+|.... .++|
T Consensus 19 ~~~v~l~C~a~-G~P~P~i~W~k~~~~i~~~~~~~~~--~---~g~L~I~~~~~~~D~G~Y~C~A~N~~G~~~s~~a~l 91 (93)
T cd05849 19 EGKVSVNCRAR-ANPFPIYKWRKNNLDIDLTNDRYSM--V---GGNLVINNPDKYKDAGRYVCIVSNIYGKVRSREATL 91 (93)
T ss_pred CCeEEEeCcCc-cCCCCEEEEEECCEEccCCCCeEEE--E---CCEEEECcCCcCCCCEEEEEEEEeCcceEEEccEEE
Confidence 45788888874 7899999999999887533 22222 1 3578999885 69999999999999997744 5555
No 152
>cd05858 Ig3_FGFR-2 Third immunoglobulin (Ig)-like domain of fibroblast growth factor receptor 2 (FGFR2). Ig3_FGFR-2-like; domain similar to the third immunoglobulin (Ig)-like domain of human fibroblast growth factor receptor 2 (FGFR2). Fibroblast growth factors (FGFs) participate in morphogenesis, development, angiogenesis, and wound healing. These FGF-stimulated processes are mediated by four FGFR tyrosine kinases (FGRF1-4). FGFRs are comprised of an extracellular portion consisting of three Ig-like domains, a transmembrane helix, and a cytoplasmic portion having protein tyrosine kinase activity. The highly conserved Ig-like domains 2 and 3, and the linker region between D2 and D3 define a general binding site for FGFs. FGFR2 is required for male sex determination.
Probab=99.38 E-value=2.1e-12 Score=88.90 Aligned_cols=74 Identities=24% Similarity=0.475 Sum_probs=51.6
Q ss_pred CCcEEEEEEeecCCCCeeEEeeC----CEEcCCCCeeEeceEEe----cccceeEEEEEcccccCCCeEEEEEEEcCCEE
Q psy15667 17 GPAVSLKCIASGNPTPDIGWTLD----GFELPTNNRFVIGQFVS----GHGDVISHVNISHVTVEDGGEYACVAENRAGT 88 (286)
Q Consensus 17 G~~~~l~C~~~g~p~p~v~W~~~----~~~l~~~~~~~~~~~~~----~~~~~~~~l~I~~~~~~D~G~Y~C~a~n~~g~ 88 (286)
|+++.|.|.+.|+|.|.+.|+|+ +..+..+.+........ ........|.|.+++.+|+|.|+|.|.|..|.
T Consensus 1 G~~v~L~C~~~g~P~P~i~W~k~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~A~N~~G~ 80 (90)
T cd05858 1 GSTVEFVCKVYSDAQPHIQWLKHVEKNGSKYGPDGLPYVTVLKTAGVNTTDKEMEVLYLRNVTFEDAGEYTCLAGNSIGI 80 (90)
T ss_pred CCeEEEEEEEecCCCCEEEEEEecccCCcEeCCCCCeeEEEeccCCceecCCceeEEEEccCCHHHCEEEEEEEEeCCCc
Confidence 78999999999999999999984 44443332211100000 00111236999999999999999999999886
Q ss_pred EE
Q psy15667 89 CE 90 (286)
Q Consensus 89 ~~ 90 (286)
..
T Consensus 81 ~~ 82 (90)
T cd05858 81 SH 82 (90)
T ss_pred cc
Confidence 53
No 153
>cd05729 Ig2_FGFR_like Second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor and similar proteins. Ig2_FGFR_like: domain similar to the second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor. FGF receptors bind FGF signaling polypeptides. FGFs participate in multiple processes such as morphogenesis, development, and angiogenesis. FGFs bind to four FGF receptor tyrosine kinases (FGFR1, -2, -3, -4). Receptor diversity is controlled by alternative splicing producing splice variants with different ligand binding characteristics and different expression patterns. FGFRs have an extracellular region comprised of three Ig-like domains, a single transmembrane helix, and an intracellular tyrosine kinase domain. Ligand binding and specificity reside in the Ig-like domains 2 and 3, and the linker region that connects these two. FGFR activation and signaling depend on FGF-induced dimerization, a process involving cell surface heparin or heparin
Probab=99.38 E-value=7.8e-12 Score=85.03 Aligned_cols=80 Identities=33% Similarity=0.606 Sum_probs=60.7
Q ss_pred CCCCCeEEEEEeeecCCCCCeEEEEeCCeeCCCCCCceeeecCCCeeeEEEcccCCCCCeEEEEEEEecccceeeEEEEE
Q psy15667 205 LPEGARTRVICGVTHGDPPLTIRWLKDGKPLSPRFPVNVSDLDSFSSLLSINSVSAAHSGEYTCVASNTAAQARYSSKLQ 284 (286)
Q Consensus 205 ~~~g~~~~l~c~~~~~~p~~~~~W~~~g~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~N~~g~~~~~~~L~ 284 (286)
+..|+.+.|.|.+. +.|.+.+.|+|++..+.................|.|.++..+|+|.|.|.|.|..|....++.|.
T Consensus 6 ~~~G~~~~l~C~~~-~~p~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~Y~C~~~n~~g~~~~~~~l~ 84 (85)
T cd05729 6 VPAGSTVRLKCPAS-GNPRPTITWLKDGKPFKKEHRIGGYKVRKKKWTLILESVVPSDSGKYTCIVENKYGSINHTYKVD 84 (85)
T ss_pred ecCCCcEEEEEEcC-CCCCCeEEEEECCEECcccCceeEEEccCcEEEEEEeECCcccCEEEEEEEEECCceEEEEEEEe
Confidence 45678888888765 56778899999998876443322222122245789999999999999999999999998888886
Q ss_pred E
Q psy15667 285 V 285 (286)
Q Consensus 285 V 285 (286)
|
T Consensus 85 v 85 (85)
T cd05729 85 V 85 (85)
T ss_pred C
Confidence 5
No 154
>cd05758 Ig5_KIRREL3-like Fifth immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 (also known as Neph2) and similar proteins. Ig5_KIRREL3-like: domain similar to the fifth immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 (also known as Neph2). This protein has five Ig-like domains, one transmembrane domain, and a cytoplasmic tail. Included in this group is mammalian Kirrel (Neph1), Kirrel2 (Neph3), and Drosophila RST (irregular chiasm C-roughest) protein. These proteins contain multiple Ig domains, have properties of cell adhesion molecules, and are important in organ development.
Probab=99.38 E-value=1.1e-11 Score=86.73 Aligned_cols=78 Identities=23% Similarity=0.288 Sum_probs=54.9
Q ss_pred CCCCCeEEEEEeeecCCCCC-eEEEEeCCeeCCCC--CCceeeecC---CCeeeEEEcccCCCC-CeEEEEEEEecccce
Q psy15667 205 LPEGARTRVICGVTHGDPPL-TIRWLKDGKPLSPR--FPVNVSDLD---SFSSLLSINSVSAAH-SGEYTCVASNTAAQA 277 (286)
Q Consensus 205 ~~~g~~~~l~c~~~~~~p~~-~~~W~~~g~~~~~~--~~~~~~~~~---~~~~~L~i~~v~~~d-~G~Y~C~a~N~~g~~ 277 (286)
+.+|+.+.|.|.+. |.|.| .+.|++++..+... .++.+.... .....|.|.++..+| .|.|+|.|.|..|..
T Consensus 13 ~~~G~~v~L~C~~~-g~P~P~~v~W~~~~~~i~~~~~~r~~i~~~~~~~~~~s~L~I~~v~~~d~~G~Y~C~A~N~~G~~ 91 (98)
T cd05758 13 AILGDKGRVECFIF-STPPPDRIVWTWKENELESGSSGRYTVETDPSPGGVLSTLTISNTQESDFQTSYNCTAWNSFGSG 91 (98)
T ss_pred EeCCCcEEEEEEEc-ccCCCCEeEEEECCEEccCCCCCCEEEEEecCCCceEEEEEECCccccccceeEEEEEEcCCCcc
Confidence 34566666666654 55666 58888888877543 234333221 223579999999955 899999999999998
Q ss_pred eeEEEE
Q psy15667 278 RYSSKL 283 (286)
Q Consensus 278 ~~~~~L 283 (286)
...+.|
T Consensus 92 ~~~~~L 97 (98)
T cd05758 92 TAIISL 97 (98)
T ss_pred cEEEEe
Confidence 888776
No 155
>cd05742 Ig1_VEGFR_like First immunoglobulin (Ig)-like domain of vascular endothelial growth factor (VEGF) receptor (R) and similar proteins. Ig1_VEGFR_like: first immunoglobulin (Ig)-like domain of vascular endothelial growth factor (VEGF) receptor(R) related proteins. The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. The VEGFR family consists of three members, VEGFR-1 (Flt-1), VEGFR-2 (KDR/Flk-1) and VEGFR-3 (Flt-4). VEGF-A interacts with both VEGFR-1 and VEGFR-2. VEGFR-1 binds strongest to VEGF, VEGF-2 binds more weakly. VEGFR-3 appears not to bind VEGF, but binds other members of the VEGF family (VEGF-C and -D). VEGFRs bind VEGFs with high affinity with the IG-like domains. VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGF
Probab=99.38 E-value=2.6e-12 Score=87.28 Aligned_cols=74 Identities=24% Similarity=0.418 Sum_probs=52.1
Q ss_pred CCcEEEEEEeecC--CCCeeEEeeCCEEcCCCCeeEeceEEecccceeEEEEEcccccCCCeEEEEEEEcCCEEEE
Q psy15667 17 GPAVSLKCIASGN--PTPDIGWTLDGFELPTNNRFVIGQFVSGHGDVISHVNISHVTVEDGGEYACVAENRAGTCE 90 (286)
Q Consensus 17 G~~~~l~C~~~g~--p~p~v~W~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~I~~~~~~D~G~Y~C~a~n~~g~~~ 90 (286)
|++++|.|.+.|. |.|.+.|.+++..+.....................|.|.+++.+|+|.|+|.|.|..|..+
T Consensus 1 Ge~~~L~C~~~g~~~~~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~s~L~I~~v~~~DsG~Y~C~a~n~~~~~~ 76 (84)
T cd05742 1 GETLVLNCTVLTELNEGVDFQWTYPGKKRGRGKSMVTRQSLSEATELSSTLTIPNATLKDSGTYTCAASSGTMDQK 76 (84)
T ss_pred CCeEEEEEEEEeCCCccEEEEEecCCcccCCceEeecccccccceEEEEEEEECCCChhhCEEEEEEEccCCCceE
Confidence 7899999999999 8899999988765532111000000001112234699999999999999999999887654
No 156
>cd05757 Ig2_IL1R_like Second immunoglobulin (Ig)-like domain of interleukin-1 receptor (IL1R) and similar proteins. Ig2_IL1R_like: domain similar to the second immunoglobulin (Ig)-like domain of interleukin-1 receptor (IL1R). IL-1 alpha and IL-1 beta are cytokines which participate in the regulation of inflammation, immune responses, and hematopoiesis. These cytokines bind to the IL-1 receptor type 1 (IL1R1), which is activated on additional association with an accessory protein, IL1RAP. IL-1 also binds a second receptor designated type II (IL1R2). Mature IL1R1 consists of three IG-like domains, a transmembrane domain, and a large cytoplasmic domain. Mature IL1R2 is organized similarly except that it has a short cytoplasmic domain. The latter does not initiate signal transduction. A naturally occurring cytokine IL-1RA (IL-1 receptor antagonist) is widely expressed and binds to IL-1 receptors, inhibiting the binding of IL-1 alpha and IL-1 beta. This group also contains ILIR-like 1 (IL1
Probab=99.37 E-value=2.5e-12 Score=88.49 Aligned_cols=74 Identities=22% Similarity=0.343 Sum_probs=53.5
Q ss_pred CCCeEEEEEeeec----CCCCCeEEEEeCCeeCCCCCCceeeecCCCeeeEEEcccCCCCCeEEEEEEEecccceeeEEE
Q psy15667 207 EGARTRVICGVTH----GDPPLTIRWLKDGKPLSPRFPVNVSDLDSFSSLLSINSVSAAHSGEYTCVASNTAAQARYSSK 282 (286)
Q Consensus 207 ~g~~~~l~c~~~~----~~p~~~~~W~~~g~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~N~~g~~~~~~~ 282 (286)
+|....|.|.... ..|.|.+.|+|+++++...... +. .+..|.|.++..+|+|.|+|.|.|..|.....+.
T Consensus 9 ~g~~~~l~Cp~~~~~~~~~~~p~i~Wyk~~~~i~~~~~~-~~----~~~~L~I~~v~~~DsG~YtC~~~n~~~~~~~~~t 83 (92)
T cd05757 9 STKGGKIVCPDLDDFKNENTLPPVQWYKDCKLLEGDRKR-FV----KGSKLLIQNVTEEDAGNYTCKLTFTHNGKQYNVT 83 (92)
T ss_pred eccCCEEECCChHHccCCCCCCcEEEeECCEECCCCccE-Ee----cCCEEEEeeCChhhCEEEEEEEEecCCCEEEEEE
Confidence 4444555554322 2367899999999998654332 22 2568999999999999999999999887777766
Q ss_pred EEE
Q psy15667 283 LQV 285 (286)
Q Consensus 283 L~V 285 (286)
+++
T Consensus 84 ~t~ 86 (92)
T cd05757 84 RTI 86 (92)
T ss_pred EEE
Confidence 554
No 157
>cd05742 Ig1_VEGFR_like First immunoglobulin (Ig)-like domain of vascular endothelial growth factor (VEGF) receptor (R) and similar proteins. Ig1_VEGFR_like: first immunoglobulin (Ig)-like domain of vascular endothelial growth factor (VEGF) receptor(R) related proteins. The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. The VEGFR family consists of three members, VEGFR-1 (Flt-1), VEGFR-2 (KDR/Flk-1) and VEGFR-3 (Flt-4). VEGF-A interacts with both VEGFR-1 and VEGFR-2. VEGFR-1 binds strongest to VEGF, VEGF-2 binds more weakly. VEGFR-3 appears not to bind VEGF, but binds other members of the VEGF family (VEGF-C and -D). VEGFRs bind VEGFs with high affinity with the IG-like domains. VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGF
Probab=99.37 E-value=3.2e-12 Score=86.84 Aligned_cols=36 Identities=36% Similarity=0.566 Sum_probs=33.7
Q ss_pred eeeEEEcccCCCCCeEEEEEEEecccceeeEEEEEE
Q psy15667 250 SSLLSINSVSAAHSGEYTCVASNTAAQARYSSKLQV 285 (286)
Q Consensus 250 ~~~L~i~~v~~~d~G~Y~C~a~N~~g~~~~~~~L~V 285 (286)
...|.|.+++.+|+|.|+|.|.|..|....++.|.|
T Consensus 48 ~s~L~I~~v~~~DsG~Y~C~a~n~~~~~~~s~~v~v 83 (84)
T cd05742 48 SSTLTIPNATLKDSGTYTCAASSGTMDQKESTKVNI 83 (84)
T ss_pred EEEEEECCCChhhCEEEEEEEccCCCceEEEEEEEE
Confidence 568999999999999999999999999999999876
No 158
>cd05874 Ig6_NrCAM Sixth immunoglobulin (Ig)-like domain of NrCAM (Ng (neuronglia) CAM-related cell adhesion molecule). Ig6_NrCAM: sixth immunoglobulin (Ig)-like domain of NrCAM (Ng (neuronglia) CAM-related cell adhesion molecule). NrCAM belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region, and an intracellular domain. NrCAM is primarily expressed in the nervous system.
Probab=99.37 E-value=3.2e-12 Score=85.11 Aligned_cols=65 Identities=23% Similarity=0.528 Sum_probs=46.8
Q ss_pred EEEEEEeecCCCCeeEEeeCCEEcCCCC--eeEeceEEecccceeEEEEEccccc----CCCeEEEEEEEcCCEEEEE
Q psy15667 20 VSLKCIASGNPTPDIGWTLDGFELPTNN--RFVIGQFVSGHGDVISHVNISHVTV----EDGGEYACVAENRAGTCEI 91 (286)
Q Consensus 20 ~~l~C~~~g~p~p~v~W~~~~~~l~~~~--~~~~~~~~~~~~~~~~~l~I~~~~~----~D~G~Y~C~a~n~~g~~~~ 91 (286)
+.|.|.+.|+|.|+|+|+|||.+|.... ++.+ ...++ .|.|..+.. .|.|.|+|.|.|..|....
T Consensus 1 ~~l~C~a~G~P~P~i~W~k~g~~l~~~~~~~~~~----~~~~g---~l~i~~~~~~~~~~d~G~Y~C~A~N~~G~~~s 71 (77)
T cd05874 1 IVIQCEAKGKPPPSFSWTRNGTHFDIDKDPKVTM----KPNTG---TLVINIMNGEKAEAYEGVYQCTARNERGAAVS 71 (77)
T ss_pred CEEEeeCcccCCCeEEEEECCeECCCcCCCCEEE----eCCCc---eEEEeccccCCCCCCCEEEEEEEEcCCCeEEe
Confidence 5799999999999999999999874332 2221 11122 355665553 4789999999999997653
No 159
>cd05754 Ig3_Perlecan_like Third immunoglobulin (Ig)-like domain found in Perlecan and similar proteins. Ig3_Perlecan_like: domain similar to the third immunoglobulin (Ig)-like domain found in Perlecan. Perlecan is a large multi-domain heparin sulfate proteoglycan, important in tissue development and organogenesis. Perlecan can be represented as 5 major portions; its fourth major portion (domain IV) is a tandem repeat of immunoglobulin-like domains (Ig2-Ig15), which can vary in size due to alternative splicing. Perlecan binds many cellular and extracellular ligands. Its domain IV region has many binding sites. Some of these have been mapped at the level of individual Ig-like domains, including a site restricted to the Ig5 domain for heparin/sulfatide, a site restricted to the Ig3 domain for nidogen-1 and nidogen-2, a site restricted to Ig4-5 for fibronectin, and sites restricted to Ig2 and to Ig13-15 for fibulin-2.
Probab=99.37 E-value=3.3e-12 Score=86.99 Aligned_cols=72 Identities=28% Similarity=0.550 Sum_probs=56.4
Q ss_pred CCCCCeEEEEEeeecCCCCCeEEEEeCCeeCCCCCCceeeecCCCeeeEEEcccCCCCCeEEEEEEEecccceeeEEEE
Q psy15667 205 LPEGARTRVICGVTHGDPPLTIRWLKDGKPLSPRFPVNVSDLDSFSSLLSINSVSAAHSGEYTCVASNTAAQARYSSKL 283 (286)
Q Consensus 205 ~~~g~~~~l~c~~~~~~p~~~~~W~~~g~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~N~~g~~~~~~~L 283 (286)
+.+|+.+.|.|.+..+.|.+.+.|++++..+.... . ...+.|.|.++..+|+|.|+|.|.|..|....++.|
T Consensus 13 v~~G~~v~L~C~~~~~~~~~~i~W~~~~~~~~~~~----~---~~~~~L~I~~v~~~DsG~Y~C~a~n~~g~~~~~~~l 84 (85)
T cd05754 13 VRPGADVSFICRAKSKSPAYTLVWTRVGGGLPSRA----M---DFNGILTIRNVQLSDAGTYVCTGSNMLDTDEATATL 84 (85)
T ss_pred EcCCCCEEEEEEcCCCCCCcEEEEEECCCcCCCcc----c---ccCCEEEECCCCHHHCEEEEEEEeccCCeEeEEEEE
Confidence 56777777777765556778899999887653221 0 124589999999999999999999999999998877
No 160
>cd05874 Ig6_NrCAM Sixth immunoglobulin (Ig)-like domain of NrCAM (Ng (neuronglia) CAM-related cell adhesion molecule). Ig6_NrCAM: sixth immunoglobulin (Ig)-like domain of NrCAM (Ng (neuronglia) CAM-related cell adhesion molecule). NrCAM belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region, and an intracellular domain. NrCAM is primarily expressed in the nervous system.
Probab=99.36 E-value=7.8e-12 Score=83.25 Aligned_cols=67 Identities=24% Similarity=0.437 Sum_probs=47.6
Q ss_pred EEEEeeecCCCCCeEEEEeCCeeCCCCCCceeeecCCCeeeEEEcccCCC----CCeEEEEEEEecccceeeE
Q psy15667 212 RVICGVTHGDPPLTIRWLKDGKPLSPRFPVNVSDLDSFSSLLSINSVSAA----HSGEYTCVASNTAAQARYS 280 (286)
Q Consensus 212 ~l~c~~~~~~p~~~~~W~~~g~~~~~~~~~~~~~~~~~~~~L~i~~v~~~----d~G~Y~C~a~N~~g~~~~~ 280 (286)
.|.|.+ .|.|.|+++|+|+|..+.......+... ...++|.|..+..+ |.|.|+|.|.|.+|...+.
T Consensus 2 ~l~C~a-~G~P~P~i~W~k~g~~l~~~~~~~~~~~-~~~g~l~i~~~~~~~~~~d~G~Y~C~A~N~~G~~~s~ 72 (77)
T cd05874 2 VIQCEA-KGKPPPSFSWTRNGTHFDIDKDPKVTMK-PNTGTLVINIMNGEKAEAYEGVYQCTARNERGAAVSN 72 (77)
T ss_pred EEEeeC-cccCCCeEEEEECCeECCCcCCCCEEEe-CCCceEEEeccccCCCCCCCEEEEEEEEcCCCeEEee
Confidence 577876 4789999999999988743322222221 22467888887753 7899999999999986553
No 161
>cd05749 Ig2_Tyro3_like Second immunoglobulin (Ig)-like domain of Axl/Tyro3 receptor tyrosine kinases (RTKs). Ig2_Tyro3_like: the second immunoglobulin (Ig)-like domain in the Axl/Tyro3 family of receptor tyrosine kinases (RTKs). This family includes Axl (also known as Ark, Ufo, and Tyro7), Tyro3 (also known as Sky, Rse, Brt, Dtk, and Tif), and Mer (also known as Nyk, c-Eyk, and Tyro12). Axl/Tyro3 family receptors have an extracellular portion with two Ig-like domains followed by two fibronectin-types III (FNIII) domains, a membrane-spanning single helix, and a cytoplasmic tyrosine kinase domain. Axl, Tyro3 and Mer are widely expressed in adult tissues, though they show higher expression in the brain, in the lymphatic and vascular systems, and in the testis. Axl, Tyro3, and Mer bind the vitamin K dependent protein Gas6 with high affinity, and in doing so activate their tyrosine kinase activity. Axl/Gas6 signaling may play a part in cell adhesion processes, prevention of apoptosis, and c
Probab=99.35 E-value=6.6e-12 Score=84.20 Aligned_cols=69 Identities=19% Similarity=0.439 Sum_probs=49.6
Q ss_pred CCCCCeEEEEEeeecCCCCC-eEEEEeCCeeCCCCCCceeeecCCCeeeEEEcccCCCCCeEEEEEEEecccceee-EEE
Q psy15667 205 LPEGARTRVICGVTHGDPPL-TIRWLKDGKPLSPRFPVNVSDLDSFSSLLSINSVSAAHSGEYTCVASNTAAQARY-SSK 282 (286)
Q Consensus 205 ~~~g~~~~l~c~~~~~~p~~-~~~W~~~g~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~N~~g~~~~-~~~ 282 (286)
+.+|+.+.|.|.+ .|.|.| .|.|+|+|..+... .. ...+.|.|..+ .|+|.|.|.|.|.+|...+ .++
T Consensus 10 v~~G~~v~l~C~a-~G~P~P~~I~W~k~g~~l~~~--~~-----~~~s~L~i~~~--~d~g~Y~C~A~N~~G~~~s~~a~ 79 (81)
T cd05749 10 VTANTPFNLTCQA-VGPPEPVEILWWQGGSPLGDP--PA-----PSPSVLNVPGL--NETSKFSCEAHNAKGVTTSRTGT 79 (81)
T ss_pred EcCCCCEEEEEEe-eeecCCeEEEEEECCEECCCC--CC-----CCCCEEEEccc--cCCeEEEEEEEeccCcEEeeeEE
Confidence 5567777777765 477777 69999999887531 11 12357888887 5889999999999996654 444
Q ss_pred E
Q psy15667 283 L 283 (286)
Q Consensus 283 L 283 (286)
|
T Consensus 80 ~ 80 (81)
T cd05749 80 V 80 (81)
T ss_pred e
Confidence 4
No 162
>cd05875 Ig6_hNeurofascin_like Sixth immunoglobulin (Ig)-like domain of human neurofascin (NF). Ig6_hNeurofascin_like: the sixth immunoglobulin (Ig)-like domain of human neurofascin (NF). NF belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region, and a cytoplasmic domain. NF has many alternatively spliced isoforms having different temporal expression patterns during development. NF participates in axon subcellular targeting and synapse formation, however little is known of the functions of the different isoforms.
Probab=99.35 E-value=5e-12 Score=84.18 Aligned_cols=65 Identities=29% Similarity=0.544 Sum_probs=47.8
Q ss_pred EEEEEEeecCCCCeeEEeeCCEEcC--CCCeeEeceEEecccceeEEEEEcccc----cCCCeEEEEEEEcCCEEEEE
Q psy15667 20 VSLKCIASGNPTPDIGWTLDGFELP--TNNRFVIGQFVSGHGDVISHVNISHVT----VEDGGEYACVAENRAGTCEI 91 (286)
Q Consensus 20 ~~l~C~~~g~p~p~v~W~~~~~~l~--~~~~~~~~~~~~~~~~~~~~l~I~~~~----~~D~G~Y~C~a~n~~g~~~~ 91 (286)
+.|.|.+.|+|.|.|+|+|||..+. .+.++.+ ...++ .|.|..+. .+|+|.|+|.|.|..|....
T Consensus 1 ~~l~C~~~G~P~P~v~W~k~g~~~~~~~~~~~~~----~~~~~---~L~i~~~~~~~~~~d~G~Y~C~A~N~~G~~~s 71 (77)
T cd05875 1 IIIECEAKGNPVPTFQWTRNGKFFNVAKDPRVSM----RRRSG---TLVIDFSGGGRPEDYEGEYQCFARNNLGTALS 71 (77)
T ss_pred CEEEEeccccCCCEEEEEECCEEccCcCCCcEEE----eCCCc---eEEEeccCCCCCCCCCEEEEEEEEeccceEEE
Confidence 4799999999999999999998764 3444432 11122 36677653 24699999999999997653
No 163
>cd05756 Ig1_IL1R_like First immunoglobulin (Ig)-like domain of interleukin-1 receptor (IL1R) and similar proteins. Ig1_IL1R_like: domain similar to the first immunoglobulin (Ig)-like domain of interleukin-1 receptor (IL1R). IL-1 alpha and IL-1 beta are cytokines which participate in the regulation of inflammation, immune responses, and hematopoiesis. These cytokines bind to the IL-1 receptor type 1 (IL1R1), which is activated on additional association with an accessory protein, IL1RAP. IL-1 also binds a second receptor designated type II (IL1R2). Mature IL1R1 consists of three Ig-like domains, a transmembrane domain, and a large cytoplasmic domain. Mature IL1R2 is organized similarly except that it has a short cytoplasmic domain. The latter does not initiate signal transduction. A naturally occurring cytokine IL-1RA (IL-1 receptor antagonist) is widely expressed and binds to IL-1 receptors, inhibiting the binding of IL-1 alpha and IL-1 beta.
Probab=99.35 E-value=2.7e-12 Score=88.79 Aligned_cols=73 Identities=22% Similarity=0.365 Sum_probs=57.5
Q ss_pred ccccccCCCcEEEEEEeec-----CCCCeeEEeeCCEEcCC----CCeeEeceEEecccceeEEEEEcccccCCCeEEEE
Q psy15667 10 IEQTLQPGPAVSLKCIASG-----NPTPDIGWTLDGFELPT----NNRFVIGQFVSGHGDVISHVNISHVTVEDGGEYAC 80 (286)
Q Consensus 10 ~~~~~~~G~~~~l~C~~~g-----~p~p~v~W~~~~~~l~~----~~~~~~~~~~~~~~~~~~~l~I~~~~~~D~G~Y~C 80 (286)
+.+.+.+|+.+.|.|.+.| .|.|.|.|+|++..+.. +.|+. ..+. .|.|.++..+|+|.|+|
T Consensus 7 ~~~~v~~G~~~~L~C~~~g~~~~~~p~~~v~Wyk~~~~~~~~~~~~~r~~------~~~~---~L~I~~~~~~DsG~Y~C 77 (94)
T cd05756 7 KKSYVLEGEPVVIKCPLFYSYIAQSPGLNLTWYKSDGKTPIPTEERSRMH------QQKD---LLWFLPAALEDSGLYTC 77 (94)
T ss_pred eEEEEecCCCeEEECCCCCcccccCCCceEEEEEcCCCCcccccccceee------ecCC---eEEEccCCcccCeEEEE
Confidence 4677889999999999999 68999999999876532 12221 1222 48899999999999999
Q ss_pred EEEcCCEEEEE
Q psy15667 81 VAENRAGTCEI 91 (286)
Q Consensus 81 ~a~n~~g~~~~ 91 (286)
.+.|..|..+.
T Consensus 78 ~~~N~~g~~~~ 88 (94)
T cd05756 78 VVRNSTYCMKV 88 (94)
T ss_pred EEcCCCccEEE
Confidence 99998876554
No 164
>cd04970 Ig6_Contactin_like Sixth Ig domain of contactin. Ig6_Contactin_like: Sixth Ig domain of contactins. Contactins are neural cell adhesion molecules and are comprised of six Ig domains followed by four fibronectin type III(FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module via contacts between Ig domains 1 and 4, and between Ig domains 2 and 3. Contactin-2 (TAG-1, axonin-1) may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. This group also includes contactin-1 and contactin-5. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-5 is expressed specifically in the rat postnatal nervous system, peaking at about 3 week
Probab=99.34 E-value=7.1e-12 Score=85.34 Aligned_cols=69 Identities=19% Similarity=0.472 Sum_probs=50.8
Q ss_pred CcEEEEEEeecCCCC--eeEEeeCCEEcCCCC---eeEeceEEecccceeEEEEEcccccCCCeEEEEEEEcCCEEEE
Q psy15667 18 PAVSLKCIASGNPTP--DIGWTLDGFELPTNN---RFVIGQFVSGHGDVISHVNISHVTVEDGGEYACVAENRAGTCE 90 (286)
Q Consensus 18 ~~~~l~C~~~g~p~p--~v~W~~~~~~l~~~~---~~~~~~~~~~~~~~~~~l~I~~~~~~D~G~Y~C~a~n~~g~~~ 90 (286)
++++|.|.+.|+|.| .+.|++||..|..+. ++.. ...... ...|.|.+++.+|+|.|+|.|.|..|..+
T Consensus 1 e~~~L~C~~~g~P~p~i~~~W~~~g~~i~~~~~~~~~~~--~~~~~~--~~~L~I~~v~~~D~G~Y~C~a~n~~g~~~ 74 (85)
T cd04970 1 ESITLQCHASHDPTLDLTFTWSFNGVPIDFDKDGGHYRR--VGGKDS--NGDLMIRNAQLKHAGKYTCTAQTVVDSLS 74 (85)
T ss_pred CcEEEEEEEecCCCCCeEEEEEECCeEeeccCCCccEEE--Eecccc--cceEEEccCCHHhCeeeEEEEecCCCcEE
Confidence 578999999999988 568999999886322 2211 000011 12589999999999999999999887654
No 165
>cd05736 Ig2_Follistatin_like Second immunoglobulin (Ig)-like domain of a follistatin-like molecule encoded by the Mahya gene and similar proteins. Ig2_Follistatin_like: domain similar to the second immunoglobulin (Ig)-like domain found in a follistatin-like molecule encoded by the CNS-related Mahya gene. Mahya genes have been retained in certain Bilaterian branches during evolution. They are conserved in Hymenoptera and Deuterostomes, but are absent from other metazoan species such as fruit fly and nematode. Mahya proteins are secretory, with a follistatin-like domain (Kazal-type serine/threonine protease inhibitor domain and EF-hand calcium-binding domain), two Ig-like domains, and a novel C-terminal domain. Mahya may be involved in learning and memory and in processing of sensory information in Hymenoptera and vertebrates. Follistatin is a secreted, multidomain protein that binds activins with high affinity and antagonizes their signaling.
Probab=99.33 E-value=5.3e-12 Score=84.04 Aligned_cols=66 Identities=36% Similarity=0.684 Sum_probs=50.8
Q ss_pred EEEEEEeecCCCCeeEEeeCCEEcCCCCeeEeceEEecccceeEEEEEcccccCCCeEEEEEEEcCCEEEE
Q psy15667 20 VSLKCIASGNPTPDIGWTLDGFELPTNNRFVIGQFVSGHGDVISHVNISHVTVEDGGEYACVAENRAGTCE 90 (286)
Q Consensus 20 ~~l~C~~~g~p~p~v~W~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~I~~~~~~D~G~Y~C~a~n~~g~~~ 90 (286)
+.|.|.+.|.|.|.+.|+|++..|..+.+..... ...+ ..|.|.++..+|+|.|+|.|.|..|..+
T Consensus 1 ~~L~C~v~g~P~p~v~W~k~~~~l~~~~~~~~~~--~~~~---~~l~I~~~~~~D~G~Y~C~a~N~~G~~~ 66 (76)
T cd05736 1 ASLRCHAEGIPLPRLTWLKNGMDITPKLSKQLTL--IANG---SELHISNVRYEDTGAYTCIAKNEAGVDE 66 (76)
T ss_pred CEeEeEeeecCCCEEEEEECCEECCCCCCccEEE--eCCC---CEEEECcCCcccCEEEEEEEEcCCCCcc
Confidence 4689999999999999999999886543221111 1122 2488999999999999999999988654
No 166
>cd05875 Ig6_hNeurofascin_like Sixth immunoglobulin (Ig)-like domain of human neurofascin (NF). Ig6_hNeurofascin_like: the sixth immunoglobulin (Ig)-like domain of human neurofascin (NF). NF belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region, and a cytoplasmic domain. NF has many alternatively spliced isoforms having different temporal expression patterns during development. NF participates in axon subcellular targeting and synapse formation, however little is known of the functions of the different isoforms.
Probab=99.33 E-value=1.2e-11 Score=82.35 Aligned_cols=67 Identities=28% Similarity=0.409 Sum_probs=46.8
Q ss_pred EEEEeeecCCCCCeEEEEeCCeeCCCCCCceeeecCCCeeeEEEcccCC----CCCeEEEEEEEecccceeeE
Q psy15667 212 RVICGVTHGDPPLTIRWLKDGKPLSPRFPVNVSDLDSFSSLLSINSVSA----AHSGEYTCVASNTAAQARYS 280 (286)
Q Consensus 212 ~l~c~~~~~~p~~~~~W~~~g~~~~~~~~~~~~~~~~~~~~L~i~~v~~----~d~G~Y~C~a~N~~g~~~~~ 280 (286)
.|.|.+. |.|.|.++|+|+|..+.......+... ..++.|.|..+.. +|+|.|+|.|.|..|.+...
T Consensus 2 ~l~C~~~-G~P~P~v~W~k~g~~~~~~~~~~~~~~-~~~~~L~i~~~~~~~~~~d~G~Y~C~A~N~~G~~~s~ 72 (77)
T cd05875 2 IIECEAK-GNPVPTFQWTRNGKFFNVAKDPRVSMR-RRSGTLVIDFSGGGRPEDYEGEYQCFARNNLGTALSN 72 (77)
T ss_pred EEEEecc-ccCCCEEEEEECCEEccCcCCCcEEEe-CCCceEEEeccCCCCCCCCCEEEEEEEEeccceEEEE
Confidence 5778775 788999999999987642222222221 1246788987642 46999999999999976554
No 167
>cd05853 Ig6_Contactin-4 Sixth Ig domain of contactin-4. Ig6_Contactin-4: sixth Ig domain of the neural cell adhesion molecule contactin-4. Contactins are neural cell adhesion molecules, and are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The different contactins show different expression patterns in the central nervous system. Highest expresson of contactin-4 is in testes, thyroid, small intestine, uterus and brain. Contactin-4 plays a role in the response of neuroblastoma cells to differentiating agents, such as retinoids. The contactin 4 gene is associated with cerebellar degeneration in spinocerebellar ataxia type 16.
Probab=99.32 E-value=8.1e-12 Score=84.23 Aligned_cols=70 Identities=19% Similarity=0.472 Sum_probs=51.2
Q ss_pred CcEEEEEEeecC--CCCeeEEeeCCEEcC--CC-CeeEeceEEecccceeEEEEEcccccCCCeEEEEEEEcCCEEEEE
Q psy15667 18 PAVSLKCIASGN--PTPDIGWTLDGFELP--TN-NRFVIGQFVSGHGDVISHVNISHVTVEDGGEYACVAENRAGTCEI 91 (286)
Q Consensus 18 ~~~~l~C~~~g~--p~p~v~W~~~~~~l~--~~-~~~~~~~~~~~~~~~~~~l~I~~~~~~D~G~Y~C~a~n~~g~~~~ 91 (286)
+++.|.|.+.++ +.+.+.|++||++|. .+ .+|.. ..+. .....|.|.+++..|+|.|+|.|.|..+..+.
T Consensus 1 ~~~~l~C~v~~d~~l~~~~~W~~dg~~i~~~~~~~~~~~---~~~~-~~~~~L~I~nv~~~dsG~YtC~a~n~~~~~~a 75 (85)
T cd05853 1 ESIVLPCQVSHDHSLDIVFTWSFNGHLIDFQKDGDHFER---VGGQ-DSAGDLMIRSIQLKHAGKYVCMVQTSVDKLSA 75 (85)
T ss_pred CcEEEEEEeccCCCCCcEEEEEECCEECcccCCCccEEE---eccC-CCCCcEEEecCCHHHCEEEEEEEEcccCceEE
Confidence 578999999874 477899999999996 22 24432 1110 01124899999999999999999998876543
No 168
>cd05771 IgC_Tapasin_R Tapasin-R immunoglobulin-like domain. IgC_Tapasin_R: Immunoglobulin-like domain on Tapasin-R. Tapasin is a V-C1 (variable-constant) immunoglobulin superfamily molecule present in the endoplasmic reticulum (ER), where it links MHC class I molecules to the transporter associated with antigen processing (TAP). Tapasin-R is a tapasin-related protein that contains similar structural motifs to Tapasin, with some marked differences, especially in the V domain, transmembrane and cytoplasmic regions. The majority of Tapasin-R is located within the ER; however, there may be some expression of Tapasin-R at the cell surface. Tapasin-R lacks an obvious ER retention signal.
Probab=99.32 E-value=5.6e-11 Score=88.80 Aligned_cols=62 Identities=26% Similarity=0.411 Sum_probs=42.7
Q ss_pred eEEEccCCCCCCeeEEEEEEcCCcceeeeeeEEEEcCCCceecCCc-eEEecCCCEEEEeeEee
Q psy15667 118 SLVINPVGREDRGIYQCIARRSDGDVAQGSAELQLGGLPYVRLIPK-VTAIDGEGLSIKCPVAG 180 (286)
Q Consensus 118 ~l~i~~v~~~d~G~Y~C~a~~~~g~~~~~~~~l~v~~~~~~~~~~~-~~~~~g~~~~l~c~~~~ 180 (286)
+|.|.+++.+|+|.|.|.+.+..+.. ...+.|.+..+|.+...+. .....|..+.|.|.+.|
T Consensus 2 sL~i~~v~~~D~G~Y~C~~~~~~~~~-~~~~~l~v~~~P~v~~~~~~~~~~~~~~~~L~C~a~g 64 (139)
T cd05771 2 SLTLPGLTVHDEGTYICSVSTPPHQA-QQIIQLSVSEPPRVRLSLEKLVSMIEEPQTLICHIAG 64 (139)
T ss_pred eEEECCCCHHHCEEEEEEEEccCcce-eeEEEEEEecCCceEEeCCCceeecCCcEEEEEEECC
Confidence 68999999999999999999876664 4567888877666544332 12224555555555554
No 169
>cd05734 Ig7_DSCAM Seventh immunoglobulin (Ig)-like domain of Down Syndrome Cell Adhesion molecule (DSCAM). Ig7_DSCAM: the seventh immunoglobulin (Ig)-like domain of Down Syndrome Cell Adhesion molecule (DSCAM). DSCAM is a cell adhesion molecule expressed largely in the developing nervous system. The gene encoding DSCAM is located at human chromosome 21q22, the locus associated with the mental retardation phenotype of Down Syndrome. DSCAM is predicted to be the largest member of the IG superfamily. It has been demonstrated that DSCAM can mediate cation-independent homophilic intercellular adhesion.
Probab=99.32 E-value=9.7e-12 Score=83.40 Aligned_cols=36 Identities=33% Similarity=0.374 Sum_probs=30.8
Q ss_pred eeeEEEcccCCCCCeEEEEEEEecccce-eeEEEEEE
Q psy15667 250 SSLLSINSVSAAHSGEYTCVASNTAAQA-RYSSKLQV 285 (286)
Q Consensus 250 ~~~L~i~~v~~~d~G~Y~C~a~N~~g~~-~~~~~L~V 285 (286)
++.|.|.++..+|+|.|+|.|.|.+|.. +.++.|+|
T Consensus 43 ~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~s~~~~l~~ 79 (79)
T cd05734 43 NGSLLIKHVLEEDSGYYLCKVSNDVGADASKSMVLTV 79 (79)
T ss_pred CCeEEECcCCcccCEEEEEEEEeCCCCCCceEEEEeC
Confidence 4679999999999999999999999976 66666654
No 170
>cd05765 Ig_3 Subgroup of the immunoglobulin (Ig) superfamily. Ig_3: subgroup of the immunoglobulin (Ig) domain found in the Ig superfamily. The Ig superfamily is a heterogenous group of proteins, built on a common fold comprised of a sandwich of two beta sheets. Members of the Ig superfamily are components of immunoglobulin, neuroglia, cell surface glycoproteins, such as T-cell receptors, CD2, CD4, CD8, and membrane glycoproteins, such as butyrophilin and chondroitin sulfate proteoglycan core protein. A predominant feature of most Ig domains is a disulfide bridge connecting the two beta-sheets with a tryptophan residue packed against the disulfide bond.
Probab=99.32 E-value=1.1e-11 Score=83.49 Aligned_cols=71 Identities=30% Similarity=0.563 Sum_probs=50.1
Q ss_pred CCcEEEEEEeecCCCCeeEEeeCCE---Ec-CCCCeeEeceEEecccceeEEEEEcccccCCCeEEEEEEEcCCEEEEE
Q psy15667 17 GPAVSLKCIASGNPTPDIGWTLDGF---EL-PTNNRFVIGQFVSGHGDVISHVNISHVTVEDGGEYACVAENRAGTCEI 91 (286)
Q Consensus 17 G~~~~l~C~~~g~p~p~v~W~~~~~---~l-~~~~~~~~~~~~~~~~~~~~~l~I~~~~~~D~G~Y~C~a~n~~g~~~~ 91 (286)
|+++.|.|.+.|.|.|.+.|+|++. .+ .....+. ..... .. ...|.|.++..+|+|.|.|.|.|..|....
T Consensus 1 G~~v~l~C~~~g~P~p~v~W~k~~~~~~~~~~~~~~~~-~~~~~-~~--~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~~ 75 (81)
T cd05765 1 GETASFHCDVTGRPPPEITWEKQVHGKENLIMRPNHVR-GNVVV-TN--IGQLVIYNAQPQDAGLYTCTARNSGGLLRA 75 (81)
T ss_pred CCcEEEEeeccccCCCcEEEEecCCCCcceeecCCccc-CCEEE-cc--ccEEEEccCCcccCEEEEEEEecCCceEEE
Confidence 7899999999999999999999742 11 1111110 00000 11 125899999999999999999999987653
No 171
>cd05882 Ig1_Necl-1 First (N-terminal) immunoglobulin (Ig)-like domain of nectin-like molcule-1 (Necl-1, also known as cell adhesion molecule3 (CADM3)). Ig1_Necl-1: domain similar to the N-terminal immunoglobulin (Ig)-like domain of nectin-like molecule-1, Necl-1 (also known as celll adhesion molecule 3 (CADM3), SynCAM2, IGSF4). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). They all have an extracellular region containing three Ig-like domains, a transmembrane region, and a cytoplasmic region. The N-terminal Ig-like domain of the extracellular region belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-1 has Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-1 is specifically expressed in neural tissue, and is important to the format
Probab=99.31 E-value=1.7e-11 Score=84.79 Aligned_cols=72 Identities=24% Similarity=0.403 Sum_probs=54.8
Q ss_pred cccccccCCCcEEEEEEeecCCCCeeEEeeCCEEc--------CCCCeeEeceEEecccceeEEEEEcccccCCCeEEEE
Q psy15667 9 FIEQTLQPGPAVSLKCIASGNPTPDIGWTLDGFEL--------PTNNRFVIGQFVSGHGDVISHVNISHVTVEDGGEYAC 80 (286)
Q Consensus 9 ~~~~~~~~G~~~~l~C~~~g~p~p~v~W~~~~~~l--------~~~~~~~~~~~~~~~~~~~~~l~I~~~~~~D~G~Y~C 80 (286)
..++++.+|+++.|.|.+.+.|.|.+.|++++..+ ..+.|+.+.. .......|.|.+++.+|+|.|+|
T Consensus 4 ~~~~tv~~G~tv~L~C~v~g~~~~~v~W~k~~~~~~~~~~~~~~~~~r~~~~~----~~~~~~~L~I~nV~~~D~G~YtC 79 (95)
T cd05882 4 TQDETVAVGGTVTLKCGVKEHDNSSLQWSNTAQQTLYFGEKRALRDNRIQLVK----STPTELIISISNVQLSDEGEYTC 79 (95)
T ss_pred cccEEEecCCcEEEEEEEeCCCCCeEEEeccCccEEEeCCeEEEeCCeEEEEe----CCCceEEEEECCCCcccCEEEEE
Confidence 46789999999999999999999999999877532 2334443211 11112369999999999999999
Q ss_pred EEEc
Q psy15667 81 VAEN 84 (286)
Q Consensus 81 ~a~n 84 (286)
.+..
T Consensus 80 ~~~t 83 (95)
T cd05882 80 SIFT 83 (95)
T ss_pred EEEe
Confidence 9976
No 172
>cd05754 Ig3_Perlecan_like Third immunoglobulin (Ig)-like domain found in Perlecan and similar proteins. Ig3_Perlecan_like: domain similar to the third immunoglobulin (Ig)-like domain found in Perlecan. Perlecan is a large multi-domain heparin sulfate proteoglycan, important in tissue development and organogenesis. Perlecan can be represented as 5 major portions; its fourth major portion (domain IV) is a tandem repeat of immunoglobulin-like domains (Ig2-Ig15), which can vary in size due to alternative splicing. Perlecan binds many cellular and extracellular ligands. Its domain IV region has many binding sites. Some of these have been mapped at the level of individual Ig-like domains, including a site restricted to the Ig5 domain for heparin/sulfatide, a site restricted to the Ig3 domain for nidogen-1 and nidogen-2, a site restricted to Ig4-5 for fibronectin, and sites restricted to Ig2 and to Ig13-15 for fibulin-2.
Probab=99.31 E-value=1e-11 Score=84.55 Aligned_cols=74 Identities=30% Similarity=0.479 Sum_probs=58.1
Q ss_pred eccccccccCCCcEEEEEEeec-CCCCeeEEeeCCEEcCCCCeeEeceEEecccceeEEEEEcccccCCCeEEEEEEEcC
Q psy15667 7 YSFIEQTLQPGPAVSLKCIASG-NPTPDIGWTLDGFELPTNNRFVIGQFVSGHGDVISHVNISHVTVEDGGEYACVAENR 85 (286)
Q Consensus 7 ~~~~~~~~~~G~~~~l~C~~~g-~p~p~v~W~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~I~~~~~~D~G~Y~C~a~n~ 85 (286)
..+....+.+|++++|.|.+.+ .|.+.+.|++++..++.. .. . .+ ..|.|.+++.+|+|.|.|.|.|.
T Consensus 6 ~~p~~~~v~~G~~v~L~C~~~~~~~~~~i~W~~~~~~~~~~--~~-----~-~~---~~L~I~~v~~~DsG~Y~C~a~n~ 74 (85)
T cd05754 6 EEPRSQEVRPGADVSFICRAKSKSPAYTLVWTRVGGGLPSR--AM-----D-FN---GILTIRNVQLSDAGTYVCTGSNM 74 (85)
T ss_pred cCCCceEEcCCCCEEEEEEcCCCCCCcEEEEEECCCcCCCc--cc-----c-cC---CEEEECCCCHHHCEEEEEEEecc
Confidence 3455668999999999999875 788999999998776432 11 0 11 14889999999999999999999
Q ss_pred CEEEEE
Q psy15667 86 AGTCEI 91 (286)
Q Consensus 86 ~g~~~~ 91 (286)
.|....
T Consensus 75 ~g~~~~ 80 (85)
T cd05754 75 LDTDEA 80 (85)
T ss_pred CCeEeE
Confidence 887653
No 173
>cd05882 Ig1_Necl-1 First (N-terminal) immunoglobulin (Ig)-like domain of nectin-like molcule-1 (Necl-1, also known as cell adhesion molecule3 (CADM3)). Ig1_Necl-1: domain similar to the N-terminal immunoglobulin (Ig)-like domain of nectin-like molecule-1, Necl-1 (also known as celll adhesion molecule 3 (CADM3), SynCAM2, IGSF4). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). They all have an extracellular region containing three Ig-like domains, a transmembrane region, and a cytoplasmic region. The N-terminal Ig-like domain of the extracellular region belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-1 has Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-1 is specifically expressed in neural tissue, and is important to the format
Probab=99.30 E-value=5.2e-11 Score=82.42 Aligned_cols=90 Identities=21% Similarity=0.366 Sum_probs=54.1
Q ss_pred ceEEecCCCEEEEeeEeeecCCeEEEEEcCCcccccccccCCCCCCCeEEEEEeeecCCCCCeEEEEeCCeeCCCCCCce
Q psy15667 163 KVTAIDGEGLSIKCPVAGYPIEEVHWEKVPPKIESFAFPFDGLPEGARTRVICGVTHGDPPLTIRWLKDGKPLSPRFPVN 242 (286)
Q Consensus 163 ~~~~~~g~~~~l~c~~~~~p~~~v~w~~~~~~~~~~~~~~~~~~~g~~~~l~c~~~~~~p~~~~~W~~~g~~~~~~~~~~ 242 (286)
+..+.+|+++.|.|.+.+.|.|.+.|.+....+.. .+. ..+.+++ ++.
T Consensus 6 ~~tv~~G~tv~L~C~v~g~~~~~v~W~k~~~~~~~---------------------~~~----~~~~~~~-------r~~ 53 (95)
T cd05882 6 DETVAVGGTVTLKCGVKEHDNSSLQWSNTAQQTLY---------------------FGE----KRALRDN-------RIQ 53 (95)
T ss_pred cEEEecCCcEEEEEEEeCCCCCeEEEeccCccEEE---------------------eCC----eEEEeCC-------eEE
Confidence 45667788888888888777777777664321100 000 0112221 222
Q ss_pred eeecCCCeeeEEEcccCCCCCeEEEEEEEecccceeeEEEEEE
Q psy15667 243 VSDLDSFSSLLSINSVSAAHSGEYTCVASNTAAQARYSSKLQV 285 (286)
Q Consensus 243 ~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~N~~g~~~~~~~L~V 285 (286)
+.........|.|.++..+|+|.|+|.+.. .-.....+.|+|
T Consensus 54 ~~~~~~~~~~L~I~nV~~~D~G~YtC~~~t-~~~~~~~~~~~v 95 (95)
T cd05882 54 LVKSTPTELIISISNVQLSDEGEYTCSIFT-MPVRTAKATVTV 95 (95)
T ss_pred EEeCCCceEEEEECCCCcccCEEEEEEEEe-eccccEEEEEEC
Confidence 222222346899999999999999999998 334455555654
No 174
>cd05752 Ig1_FcgammaR_like Frst immunoglobulin (Ig)-like domain of Fcgamma-receptors (FcgammaRs) and similar proteins. Ig1_FcgammaR_like: domain similar to the first immunoglobulin (Ig)-like domain of Fcgamma-receptors (FcgammaRs). Interactions between IgG and FcgammaR are important to the initiation of cellular and humoral response. IgG binding to FcgammaR leads to a cascade of signals and ultimately to functions such as antibody-dependent-cellular-cytotoxicity (ADCC), endocytosis, phagocytosis, release of inflammatory mediators, etc. FcgammaR has two Ig-like domains. This group also contains FcepsilonRI, which binds IgE with high affinity.
Probab=99.30 E-value=7.4e-12 Score=83.38 Aligned_cols=68 Identities=21% Similarity=0.421 Sum_probs=49.4
Q ss_pred CCCCCCeEEEEEeeecCCCCCeEEEEeCCeeCCCCCCceeeecCCCeeeEEEcccCCCCCeEEEEEEEecccceeeEEEE
Q psy15667 204 GLPEGARTRVICGVTHGDPPLTIRWLKDGKPLSPRFPVNVSDLDSFSSLLSINSVSAAHSGEYTCVASNTAAQARYSSKL 283 (286)
Q Consensus 204 ~~~~g~~~~l~c~~~~~~p~~~~~W~~~g~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~N~~g~~~~~~~L 283 (286)
.+.+|+.+.|.|.+...+.+..+.|+|+|..+.. ....|.|.++ .+|+|.|+|.|.|. ..+..+.|
T Consensus 11 ~v~~G~~V~L~C~~~~~p~~~~~~W~kng~~l~~-----------~~~~l~i~~~-~~dsG~Y~C~a~~~--~~S~~v~l 76 (78)
T cd05752 11 TIFQGEKVTLTCNGFNSPEQNSTQWYHNGKLLET-----------TTNSYRIRAA-NNDSGEYRCQTQGS--SLSDPVHL 76 (78)
T ss_pred EeeCCCCEEEEEeCCCCCCCccEEEEECCEEeec-----------cCCeEEEeec-ccCCEEeEEECCCC--cCCCCEEE
Confidence 4567788888887654333457999999987632 1357899999 99999999999986 44444555
Q ss_pred EE
Q psy15667 284 QV 285 (286)
Q Consensus 284 ~V 285 (286)
+|
T Consensus 77 ~V 78 (78)
T cd05752 77 EV 78 (78)
T ss_pred eC
Confidence 44
No 175
>cd04967 Ig1_Contactin First Ig domain of contactin. Ig1_Contactin: First Ig domain of contactins. Contactins are neural cell adhesion molecules and are comprised of six Ig domains followed by four fibronectin type III(FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module via contacts between Ig domains 1 and 4, and between Ig domains 2 and 3. Contactin-2 (TAG-1, axonin-1) may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. This group also includes contactin-1 and contactin-5. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-5 is expressed specifically in the rat postnatal nervous system, peaking at about 3 weeks postnata
Probab=99.29 E-value=3e-11 Score=83.35 Aligned_cols=69 Identities=29% Similarity=0.511 Sum_probs=50.9
Q ss_pred CCCeEEEEEeeecCCCCCeEEEEeCCeeCCCCCCceeeecCCCeeeEEEcccC-CCCCeEEEEEEEecccceee
Q psy15667 207 EGARTRVICGVTHGDPPLTIRWLKDGKPLSPRFPVNVSDLDSFSSLLSINSVS-AAHSGEYTCVASNTAAQARY 279 (286)
Q Consensus 207 ~g~~~~l~c~~~~~~p~~~~~W~~~g~~~~~~~~~~~~~~~~~~~~L~i~~v~-~~d~G~Y~C~a~N~~g~~~~ 279 (286)
.|..+.|.|.+. |.|.|.++|+|++..+.......+... .+.|.|.++. .+|+|.|+|.|.|.+|...+
T Consensus 18 ~~~~~~l~C~~~-g~p~p~i~W~k~~~~l~~~~~~~~~~~---~~~L~i~~~~~~~d~G~Y~C~a~N~~G~~~S 87 (91)
T cd04967 18 DEGKVSLNCRAR-GSPPPTYRWLMNGTEIDDEPDSRYSLV---GGNLVISNPSKAKDAGRYQCLASNIVGTVLS 87 (91)
T ss_pred CCCEEEEEEeee-EcCCCEEEEEECCEECCCCCCCCEEEE---CCEEEEecCCccCCCEEEEEEEEcCCCEEEe
Confidence 346688888874 678889999999998843322222221 3468898877 59999999999999997654
No 176
>cd05895 Ig_Pro_neuregulin-1 Immunoglobulin (Ig)-like domain found in neuregulin (NRG)-1. Ig_Pro_neuregulin-1: immunoglobulin (Ig)-like domain found in neuregulin (NRG)-1. There are many NRG-1 isoforms which arise from the alternative splicing of mRNA. NRG-1 belongs to the neuregulin gene family, which is comprised of four genes. This group represents NRG-1. NRGs are signaling molecules, which participate in cell-cell interactions in the nervous system, breast, and heart, and other organ systems, and are implicated in the pathology of diseases including schizophrenia, multiple sclerosis, and breast cancer. The NRG-1 protein binds to and activates the tyrosine kinases receptors ErbB3 and ErbB4, initiating signaling cascades. NRG-1 has multiple functions; for example, in the brain it regulates various processes such as radial glia formation and neuronal migration, dendritic development, and expression of neurotransmitters receptors; in the peripheral nervous system NRG-1 regulates process
Probab=99.28 E-value=2.3e-11 Score=80.91 Aligned_cols=67 Identities=25% Similarity=0.544 Sum_probs=49.9
Q ss_pred EEEEEEeec-CCCCeeEEeeCCEEcCCCC----eeEeceEEecccceeEEEEEcccccCCCeEEEEEEEcCCEEEEE
Q psy15667 20 VSLKCIASG-NPTPDIGWTLDGFELPTNN----RFVIGQFVSGHGDVISHVNISHVTVEDGGEYACVAENRAGTCEI 91 (286)
Q Consensus 20 ~~l~C~~~g-~p~p~v~W~~~~~~l~~~~----~~~~~~~~~~~~~~~~~l~I~~~~~~D~G~Y~C~a~n~~g~~~~ 91 (286)
++|+|.+.+ .|.+.+.|+++|++|.... ++.+. .......|.|.++..+|+|.|+|.|.|..|....
T Consensus 1 ~~L~C~a~~~~p~~~~~W~~~g~~i~~~~~~~~~~~~~-----~~~~~~~L~I~~~~~~DsG~Y~C~a~N~~g~~~~ 72 (76)
T cd05895 1 LVLRCETVSEYPSLRFKWFKNGKEIGAKNKPDNKIKIR-----KKKKSSELQISKASLADNGEYKCMVSSKLGNDSV 72 (76)
T ss_pred CEEEEecccCCCCCceEEEECCcccccCCCCCceEEEE-----eCCcEEEEEECcCCcccCEEEEEEEEeCCCceeE
Confidence 479999875 6889999999999886432 22211 1112245899999999999999999999886543
No 177
>cd05729 Ig2_FGFR_like Second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor and similar proteins. Ig2_FGFR_like: domain similar to the second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor. FGF receptors bind FGF signaling polypeptides. FGFs participate in multiple processes such as morphogenesis, development, and angiogenesis. FGFs bind to four FGF receptor tyrosine kinases (FGFR1, -2, -3, -4). Receptor diversity is controlled by alternative splicing producing splice variants with different ligand binding characteristics and different expression patterns. FGFRs have an extracellular region comprised of three Ig-like domains, a single transmembrane helix, and an intracellular tyrosine kinase domain. Ligand binding and specificity reside in the Ig-like domains 2 and 3, and the linker region that connects these two. FGFR activation and signaling depend on FGF-induced dimerization, a process involving cell surface heparin or heparin
Probab=99.28 E-value=5.3e-11 Score=80.88 Aligned_cols=75 Identities=32% Similarity=0.547 Sum_probs=58.6
Q ss_pred cccCCCcEEEEEEeecCCCCeeEEeeCCEEcCCCCeeEeceEEecccceeEEEEEcccccCCCeEEEEEEEcCCEEEEE
Q psy15667 13 TLQPGPAVSLKCIASGNPTPDIGWTLDGFELPTNNRFVIGQFVSGHGDVISHVNISHVTVEDGGEYACVAENRAGTCEI 91 (286)
Q Consensus 13 ~~~~G~~~~l~C~~~g~p~p~v~W~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~I~~~~~~D~G~Y~C~a~n~~g~~~~ 91 (286)
.+.+|+.+.|.|.+.+.|.+.+.|++++..+..+..+.... .......|.|.++..+|+|.|.|.+.|..|..+.
T Consensus 5 ~~~~G~~~~l~C~~~~~p~~~v~W~k~~~~~~~~~~~~~~~----~~~~~~~l~i~~~~~~d~g~Y~C~~~n~~g~~~~ 79 (85)
T cd05729 5 AVPAGSTVRLKCPASGNPRPTITWLKDGKPFKKEHRIGGYK----VRKKKWTLILESVVPSDSGKYTCIVENKYGSINH 79 (85)
T ss_pred EecCCCcEEEEEEcCCCCCCeEEEEECCEECcccCceeEEE----ccCcEEEEEEeECCcccCEEEEEEEEECCceEEE
Confidence 46789999999999999999999999999886554432211 1112235889999999999999999999887543
No 178
>PHA02826 IL-1 receptor-like protein; Provisional
Probab=99.27 E-value=3.3e-11 Score=96.90 Aligned_cols=128 Identities=20% Similarity=0.346 Sum_probs=88.9
Q ss_pred cccccccCCCcEEEEEEeecCC-----------CCeeEEeeCCEEc--C-CCCee-----EeceEEecccceeEEEEEcc
Q psy15667 9 FIEQTLQPGPAVSLKCIASGNP-----------TPDIGWTLDGFEL--P-TNNRF-----VIGQFVSGHGDVISHVNISH 69 (286)
Q Consensus 9 ~~~~~~~~G~~~~l~C~~~g~p-----------~p~v~W~~~~~~l--~-~~~~~-----~~~~~~~~~~~~~~~l~I~~ 69 (286)
+....+.+|+++.|.|.+.+.| .+.|.|+|++... . .+.+. ...+. ..++ ..|.|.+
T Consensus 29 ~~~~~v~eGe~v~L~C~~~~~~~~~~~~~~~~~~~~V~W~k~~s~~~v~~~~~~~~~~~i~~~~~-~~r~---~~L~I~~ 104 (227)
T PHA02826 29 LTPVYAKFGDPMVLLCTGKHYKKSIFFDKTFITSYNVTWSKTDSLAFVRDSGARTKIKKITHNEI-GDRS---ENLWIGN 104 (227)
T ss_pred cceEEecCCCCEEEEccccccccccccccccCCCccEEEEeCCeEEEEEcCCCccccccccccce-ecCC---CeEEECC
Confidence 3556789999999999987754 3489999987542 1 11110 00000 0111 2489999
Q ss_pred cccCCCeEEEEEEEcCCEEEEE-------------------------ecCC-----CCCeeEEEeeCCccCcCC------
Q psy15667 70 VTVEDGGEYACVAENRAGTCEI-------------------------TPYD-----SGPYLIAWFKDGRQIPGR------ 113 (286)
Q Consensus 70 ~~~~D~G~Y~C~a~n~~g~~~~-------------------------~~~~-----~~~~~~~W~~~g~~l~~~------ 113 (286)
++.+|+|.|+|+|.|..+..+. .... .+.+.++|+|||+++...
T Consensus 105 v~~~DsG~Y~C~a~N~~~~~~~~i~L~V~~~~~~~~~~~G~~v~L~C~~~~~~~~~~p~p~I~WyKng~~l~~~~r~~~~ 184 (227)
T PHA02826 105 VINIDEGIYICTISSGNICEESTIRLTFDSGTINYQFNSGKDSKLHCYGTDGISSTFKDYTLTWYKNGNIVLYTDRIQLR 184 (227)
T ss_pred CChHHCEEEEEEEEECCcceEEEEEEEEecCCccceEecCCCEEEEeeCCCCccccCCCceEEEEECCEECCCCCCEEEe
Confidence 9999999999999997653211 0110 124789999999988532
Q ss_pred CCcceEEEccCCCCCCeeEEEEEEcCC
Q psy15667 114 TSSTSLVINPVGREDRGIYQCIARRSD 140 (286)
Q Consensus 114 ~~~~~l~i~~v~~~d~G~Y~C~a~~~~ 140 (286)
.....|.|.++..+|+|.|+|.|...+
T Consensus 185 ~~~~~L~I~~V~~~DsG~YtC~a~~~~ 211 (227)
T PHA02826 185 NNNSTLVIKSATHDDSGIYTCNLRFNK 211 (227)
T ss_pred CCCCEEEECcCCHHhCEEEEEEEEEeE
Confidence 123579999999999999999998754
No 179
>cd05861 Ig1_PDGFR-alphabeta Frst immunoglobulin (Ig)-like domain of platelet-derived growth factor (PDGF) receptors (R), alpha (CD140a), and beta (CD140b). Ig1_PDGFR-alphabeta: The first immunoglobulin (Ig)-like domain of platelet-derived growth factor (PDGF) receptors (R), alpha (CD140a), and beta (CD140b). PDGF is a potent mitogen for connective tissue cells. PDGF-stimulated processes are mediated by three different PDGFs (PDGF-A,-B, and C). PDGFRalpha binds to all three PDGFs, whereas the PDGFRbeta binds only to PDGF-B. PDGFRs alpha and beta have similar organization: an extracellular component with five Ig-like domains, a transmembrane segment, and a cytoplasmic portion having protein tyrosine kinase activity. In mice, PDGFRalpha and PDGFRbeta are essential for normal development.
Probab=99.27 E-value=5e-11 Score=80.79 Aligned_cols=70 Identities=29% Similarity=0.538 Sum_probs=48.9
Q ss_pred CCcEEEEEEeecCCCCeeEEeeCCEEcCCCCeeEeceEEecccceeEEEEEcccccCCCeEEEEEEEcCCE
Q psy15667 17 GPAVSLKCIASGNPTPDIGWTLDGFELPTNNRFVIGQFVSGHGDVISHVNISHVTVEDGGEYACVAENRAG 87 (286)
Q Consensus 17 G~~~~l~C~~~g~p~p~v~W~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~I~~~~~~D~G~Y~C~a~n~~g 87 (286)
|++++|.|.+.++|.+.+.|.++++......... .............|.|.+++.+|+|.|.|.|.|..+
T Consensus 1 Ge~~~l~C~~~~~~~~~~~W~~~~~~~~~~~~~~-~~~~~~~~~~~s~L~I~~~~~~DsG~Y~C~a~n~~~ 70 (84)
T cd05861 1 GETITVNCIVQGNEVVDFSWTYPGKDIGKGIPEV-EEVKVPATTLRSTLTFPHATVEDSGTYECAAHESTQ 70 (84)
T ss_pred CCcEEEEEEEECCCccEEEEEECCccCCCCceEE-EEEecCCcEEEEEEEECCCCcCCCEEEEEEEEECcc
Confidence 8999999999999999999998776432111000 000001112235699999999999999999998653
No 180
>cd07701 Ig1_Necl-3 First (N-terminal) immunoglobulin (Ig)-like domain of nectin-like molecule-3 (Necl-3, also known as cell adhesion molecule 2 (CADM2)). Ig1_Necl-3: domain similar to the N-terminal immunoglobulin (Ig)-like domain of nectin-like molecule-3, Necl-3 (also known as cell adhesion molecule 2 (CADM2), SynCAM2, IGSF4D). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). They all have an extracellular region containing three Ig-like domains, a transmembrane region, and a cytoplasmic region. The N-terminal Ig-like domain of the extracellular region, belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-3 accumulates in central and peripheral nervous system tissue, and has been shown to selectively interact with oligodendrocytes.
Probab=99.26 E-value=2.8e-11 Score=83.95 Aligned_cols=75 Identities=20% Similarity=0.306 Sum_probs=54.9
Q ss_pred ccccccccCCCcEEEEEEeecCCCCeeEEeeCC--------EEcCCCCeeEeceEEecccceeEEEEEcccccCCCeEEE
Q psy15667 8 SFIEQTLQPGPAVSLKCIASGNPTPDIGWTLDG--------FELPTNNRFVIGQFVSGHGDVISHVNISHVTVEDGGEYA 79 (286)
Q Consensus 8 ~~~~~~~~~G~~~~l~C~~~g~p~p~v~W~~~~--------~~l~~~~~~~~~~~~~~~~~~~~~l~I~~~~~~D~G~Y~ 79 (286)
...++++.+|++++|.|.+.+.|.+.+.|++.+ .....+.|+.... ......+|.|.+++.+|+|.|+
T Consensus 3 ~~~~v~v~eG~~v~L~C~~~~~p~~~v~W~~~~~~~l~~~~~~~~~~~r~~~~~----~~~~~~sL~I~~v~~~DsG~Y~ 78 (95)
T cd07701 3 LTQNVTVVEGGTANLTCRVDQNDNTSLQWSNPAQQTLYFDDKKALRDNRIELVR----ASWHELSISISDVSLSDEGQYT 78 (95)
T ss_pred ccceEEEecCCcEEEEEEEecCCceEEEEeCCCCeEEEEcCcccccCCCEEEEE----CCCCcEEEEECcCCcccCEEEE
Confidence 345678999999999999999999999998632 2222345554311 1111235999999999999999
Q ss_pred EEEEcCC
Q psy15667 80 CVAENRA 86 (286)
Q Consensus 80 C~a~n~~ 86 (286)
|.+.+..
T Consensus 79 C~~~t~~ 85 (95)
T cd07701 79 CSLFTMP 85 (95)
T ss_pred EEeEeec
Confidence 9998743
No 181
>cd05898 Ig5_KIRREL3 Fifth immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 protein (also known as Neph2). Ig5_KIRREL3: the fifth immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 protein (also known as Neph2). This protein has five Ig-like domains, one transmembrane domain, and a cytoplasmic tail. Included in this group is mammalian Kirrel (Neph1). These proteins contain multiple Ig domains, have properties of cell adhesion molecules, and are important in organ development. Neph1 and 2 may mediate axonal guidance and synapse formation in certain areas of the CNS. In the kidney, they participate in the formation of the slit diaphragm.
Probab=99.26 E-value=6.8e-11 Score=81.87 Aligned_cols=79 Identities=25% Similarity=0.344 Sum_probs=58.5
Q ss_pred CCCCCeEEEEEeeecCCCCCeEEEEeCCeeCCCC--CCceeeec---CCCeeeEEEcccCCCC-CeEEEEEEEeccccee
Q psy15667 205 LPEGARTRVICGVTHGDPPLTIRWLKDGKPLSPR--FPVNVSDL---DSFSSLLSINSVSAAH-SGEYTCVASNTAAQAR 278 (286)
Q Consensus 205 ~~~g~~~~l~c~~~~~~p~~~~~W~~~g~~~~~~--~~~~~~~~---~~~~~~L~i~~v~~~d-~G~Y~C~a~N~~g~~~ 278 (286)
+.+|+.+.|.|.+...+++..|.|.+++..+... .++.+... .....+|.|.++..+| .|.|.|.|.|..|+..
T Consensus 13 ~~~G~~~~L~C~~~s~P~P~~i~W~w~~~~i~~~~~~r~~I~~~~~~~g~~S~L~I~~~~~~d~~g~Y~C~a~N~~G~d~ 92 (98)
T cd05898 13 AVRGERGKVKCFIGSTPPPDRIAWAWKENVLESGTSERYTVERTSTGSGVLSTLTINNIMEADFQTHYNCTAWNSFGSGT 92 (98)
T ss_pred EeCCCcEEEEEEEccCCCCcEEEEEEccccccCCCCCCEEEEEEccCCCcEEEEEECCCccccCCcEEEEEEEeCCccce
Confidence 4567777777776555666678888888776543 34544432 2457789999998877 7999999999999998
Q ss_pred eEEEE
Q psy15667 279 YSSKL 283 (286)
Q Consensus 279 ~~~~L 283 (286)
...+|
T Consensus 93 ~~i~L 97 (98)
T cd05898 93 AIIQL 97 (98)
T ss_pred EEEEe
Confidence 87776
No 182
>cd05861 Ig1_PDGFR-alphabeta Frst immunoglobulin (Ig)-like domain of platelet-derived growth factor (PDGF) receptors (R), alpha (CD140a), and beta (CD140b). Ig1_PDGFR-alphabeta: The first immunoglobulin (Ig)-like domain of platelet-derived growth factor (PDGF) receptors (R), alpha (CD140a), and beta (CD140b). PDGF is a potent mitogen for connective tissue cells. PDGF-stimulated processes are mediated by three different PDGFs (PDGF-A,-B, and C). PDGFRalpha binds to all three PDGFs, whereas the PDGFRbeta binds only to PDGF-B. PDGFRs alpha and beta have similar organization: an extracellular component with five Ig-like domains, a transmembrane segment, and a cytoplasmic portion having protein tyrosine kinase activity. In mice, PDGFRalpha and PDGFRbeta are essential for normal development.
Probab=99.26 E-value=8e-11 Score=79.80 Aligned_cols=77 Identities=25% Similarity=0.456 Sum_probs=46.7
Q ss_pred CCeEEEEEeeecCCCCCeEEEEeCCeeCCCCCCc--eee-ecCCCeeeEEEcccCCCCCeEEEEEEEeccc--ceeeEEE
Q psy15667 208 GARTRVICGVTHGDPPLTIRWLKDGKPLSPRFPV--NVS-DLDSFSSLLSINSVSAAHSGEYTCVASNTAA--QARYSSK 282 (286)
Q Consensus 208 g~~~~l~c~~~~~~p~~~~~W~~~g~~~~~~~~~--~~~-~~~~~~~~L~i~~v~~~d~G~Y~C~a~N~~g--~~~~~~~ 282 (286)
|+.+.|.|.+. +.|.+.+.|.+.++........ ... ........|.|.+++.+|+|.|+|.|.|..+ ....++.
T Consensus 1 Ge~~~l~C~~~-~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~s~L~I~~~~~~DsG~Y~C~a~n~~~~~~~~~sv~ 79 (84)
T cd05861 1 GETITVNCIVQ-GNEVVDFSWTYPGKDIGKGIPEVEEVKVPATTLRSTLTFPHATVEDSGTYECAAHESTQDQKAFKKVN 79 (84)
T ss_pred CCcEEEEEEEE-CCCccEEEEEECCccCCCCceEEEEEecCCcEEEEEEEECCCCcCCCEEEEEEEEECccCcceeEEEE
Confidence 34455555543 3455666666655432111000 000 0111256899999999999999999999876 6677777
Q ss_pred EEE
Q psy15667 283 LQV 285 (286)
Q Consensus 283 L~V 285 (286)
|+|
T Consensus 80 i~V 82 (84)
T cd05861 80 ITV 82 (84)
T ss_pred EEE
Confidence 766
No 183
>cd05727 Ig2_Contactin-2-like Second Ig domain of the neural cell adhesion molecule contactin-2 and similar proteins. Ig2_Contactin-2-like: second Ig domain of the neural cell adhesion molecule contactin-2. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-2 (aliases TAG-1, axonin-1) facilitates cell adhesion by homophilic binding between molecules in apposed membranes. The first four Ig domains form the intermolecular binding fragment which arranges as a compact U-shaped module by contacts between Ig domains 1 and 4, and domains 2 and 3. It has been proposed that a linear zipper-like array forms, from contactin-2 molecules alternatively provided by the two apposed membranes.
Probab=99.25 E-value=1.7e-11 Score=84.20 Aligned_cols=71 Identities=27% Similarity=0.396 Sum_probs=55.4
Q ss_pred CCCCCCeEEEEEeeecCCCCCeEEEEeCCeeC--CCCCCceeeecCCCeeeEEEcccCCCCCeEEEEEEEecccce
Q psy15667 204 GLPEGARTRVICGVTHGDPPLTIRWLKDGKPL--SPRFPVNVSDLDSFSSLLSINSVSAAHSGEYTCVASNTAAQA 277 (286)
Q Consensus 204 ~~~~g~~~~l~c~~~~~~p~~~~~W~~~g~~~--~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~N~~g~~ 277 (286)
.+.+|..+.|.|....|.|.+.+.|++++..+ ..+.+..+.. ..+.|.|.+|+.+|+|.|+|.|+|.++..
T Consensus 14 ~v~eG~~~~L~C~pP~g~P~p~~~W~k~~~~~~~~~d~r~~~~~---~~G~L~fs~v~~~D~g~Y~C~A~n~~~~~ 86 (96)
T cd05727 14 KVKEGWGVVLFCDPPPHYPDLSYRWLLNEFPNFIPEDGRRFVSQ---TNGNLYIAKVEASDRGNYSCFVSSPSSTK 86 (96)
T ss_pred eeeeCCcEEEeeCCCCCCCCCEEEEEECCcccccccCCCeEEeC---CCCcEEEeecCHhhCceeEEEEEecccCC
Confidence 36678888888888888999999999998754 2233332222 25689999999999999999999987654
No 184
>cd05753 Ig2_FcgammaR_like Second immunoglobulin (Ig)-like domain of Fcgamma-receptors (FcgammaRs) and similar proteins. Ig2_FcgammaR_like: domain similar to the second immunoglobulin (Ig)-like domain of Fcgamma-receptors (FcgammaRs). Interactions between IgG and FcgammaR are important to the initiation of cellular and humoral response. IgG binding to FcgammaR leads to a cascade of signals and ultimately to functions such as antibody-dependent-cellular-cytotoxicity (ADCC), endocytosis, phagocytosis, release of inflammatory mediators, etc. FcgammaR has two Ig-like domains. This group also contains FcepsilonRI, which binds IgE with high affinity.
Probab=99.25 E-value=2.6e-11 Score=81.91 Aligned_cols=71 Identities=18% Similarity=0.311 Sum_probs=55.6
Q ss_pred EeccccccccCCCcEEEEEEeec-CCCCeeEEeeCCEEcCCCCeeEeceEEecccceeEEEEEcccccCCCeEEEEEEEc
Q psy15667 6 TYSFIEQTLQPGPAVSLKCIASG-NPTPDIGWTLDGFELPTNNRFVIGQFVSGHGDVISHVNISHVTVEDGGEYACVAEN 84 (286)
Q Consensus 6 ~~~~~~~~~~~G~~~~l~C~~~g-~p~p~v~W~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~I~~~~~~D~G~Y~C~a~n 84 (286)
.+.....++.+|++++|.|.+.+ .|.+.+.|+|+|..+.... .. ..|.|.+++.+|+|.|+|.|.+
T Consensus 3 ~l~~p~~~V~~G~~vtL~C~~~~~~~~~~~~w~k~g~~~~~~~----------~~---~~l~I~~~~~~dsG~Y~C~~~~ 69 (83)
T cd05753 3 LLQVPSRVVFEGEPLVLRCHGWKNKPVYKVTYYRDGKAKKYSH----------SN---SNLSIPQATLSDSGSYHCSGII 69 (83)
T ss_pred EEECCcceecCCCCEEEEeeCCCCCcceEEEEEECCeEccccC----------CC---ceEEECccCHHHCEEEEEEEEe
Confidence 44556668999999999999864 5677899999998764211 01 2488999999999999999999
Q ss_pred CCEEE
Q psy15667 85 RAGTC 89 (286)
Q Consensus 85 ~~g~~ 89 (286)
..+..
T Consensus 70 ~~~~~ 74 (83)
T cd05753 70 GSYDY 74 (83)
T ss_pred CCcee
Confidence 87643
No 185
>cd04979 Ig_Semaphorin_C Immunoglobulin (Ig)-like domain of semaphorin. Ig_Semaphorin_C; Immunoglobulin (Ig)-like domain in semaphorins. Semaphorins are transmembrane protein that have important roles in a variety of tissues. Functionally, semaphorins were initially characterized for their importance in the development of the nervous system and in axonal guidance. Later they have been found to be important for the formation and functioning of the cardiovascular, endocrine, gastrointestinal, hepatic, immune, musculoskeletal, renal, reproductive, and respiratory systems. Semaphorins function through binding to their receptors and transmembrane semaphorins also serves as receptors themselves. Although molecular mechanism of semaphorins is poorly understood, the Ig-like domains may involve in ligand binding or dimerization.
Probab=99.25 E-value=1.9e-11 Score=83.99 Aligned_cols=69 Identities=23% Similarity=0.388 Sum_probs=54.2
Q ss_pred cccccccCCCcEEEEEEeecCCCCeeEEeeCCEEcCCC----CeeEeceEEecccceeEEEEEcccccCCCeEEEEEEEc
Q psy15667 9 FIEQTLQPGPAVSLKCIASGNPTPDIGWTLDGFELPTN----NRFVIGQFVSGHGDVISHVNISHVTVEDGGEYACVAEN 84 (286)
Q Consensus 9 ~~~~~~~~G~~~~l~C~~~g~p~p~v~W~~~~~~l~~~----~~~~~~~~~~~~~~~~~~l~I~~~~~~D~G~Y~C~a~n 84 (286)
+..+.+.+|+++.|.|.+.+ |.+.+.|++++..+... .++.. ... .|.|.+++.+|+|.|.|.|.+
T Consensus 3 ~~~~~v~~g~~v~L~C~~~~-p~~~i~W~k~~~~~~~~~~~~~~~~~------~~~---~L~I~~~~~~D~G~Y~C~a~~ 72 (89)
T cd04979 3 EKVVTVVEGNSVFLECSPKS-NLASVVWLFQGGPLQRKEEPEERLLV------TED---GLLIRSVSPADAGVYTCQSVE 72 (89)
T ss_pred ceEEEEECCCcEEEEEeCCC-CCceEEEEECCcccccccCcCceEEE------cCC---CEEEccCCHHHCEEEEEEEec
Confidence 45567899999999999987 88899999999877643 23322 111 378999999999999999987
Q ss_pred CCE
Q psy15667 85 RAG 87 (286)
Q Consensus 85 ~~g 87 (286)
..+
T Consensus 73 ~~~ 75 (89)
T cd04979 73 HGF 75 (89)
T ss_pred Ccc
Confidence 643
No 186
>cd05873 Ig_Sema4D_like Immunoglobulin (Ig)-like domain of the class IV semaphorin Sema4D. Ig_Sema4D_like; Immunoglobulin (Ig)-like domain of Sema4D. Sema4D is a Class IV semaphorin. Semaphorins are classified based on structural features additional to the Sema domain. Sema4D has extracellular Sema and Ig domains, a transmembrane domain, and a short cytoplasmic domain. Sema4D plays a part in the development of GABAergic synapses. Sema4D in addition is an immune semaphorin. It is abundant on resting T cells; its expression is weak on resting B cells and antigen presenting cells (APCs), but is upregulated by various stimuli. The receptor used by Sema4D in the immune system is CD72. Sem4D enhances the activation of B cells and DCs through binding CD72, perhaps by reducing CD72s inhibitory signals. The receptor used by Sema4D in the non-lymphatic tissues is plexin-B1. Sem4D is anchored to the cell surface but its extracellular domain can be released from the cell surface by a metalloproteas
Probab=99.23 E-value=9.1e-11 Score=79.42 Aligned_cols=64 Identities=23% Similarity=0.394 Sum_probs=50.0
Q ss_pred CCCCCCeEEEEEeeecCCCCCeEEEEeCCeeCCCCC-CceeeecCCCeeeEEEcccCCCCCeEEEEEEEecc
Q psy15667 204 GLPEGARTRVICGVTHGDPPLTIRWLKDGKPLSPRF-PVNVSDLDSFSSLLSINSVSAAHSGEYTCVASNTA 274 (286)
Q Consensus 204 ~~~~g~~~~l~c~~~~~~p~~~~~W~~~g~~~~~~~-~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~N~~ 274 (286)
.+.+|..+.|.|.+. .+.+++.|.++|..+.... ++.+. .+.|.|.++..+|+|.|+|.|.+..
T Consensus 7 ~v~~G~~v~L~C~~~--~~~~~i~W~~ng~~i~~~~~r~~~~-----~~~L~I~nv~~~DsG~Y~C~a~e~~ 71 (87)
T cd05873 7 TFKLGNNAELKCSPK--SNLARVVWKFDGKVLTPESAKYLLY-----RDGLLIFNASEADAGRYQCLSVEKS 71 (87)
T ss_pred EEECCCCEEEEEECC--CCCCeEEEEECCEECCCCCceEEEE-----CCcEEEeCCCHHHCEEEEEEEEecc
Confidence 356788888888753 3578999999999987653 33322 2468999999999999999999885
No 187
>cd05734 Ig7_DSCAM Seventh immunoglobulin (Ig)-like domain of Down Syndrome Cell Adhesion molecule (DSCAM). Ig7_DSCAM: the seventh immunoglobulin (Ig)-like domain of Down Syndrome Cell Adhesion molecule (DSCAM). DSCAM is a cell adhesion molecule expressed largely in the developing nervous system. The gene encoding DSCAM is located at human chromosome 21q22, the locus associated with the mental retardation phenotype of Down Syndrome. DSCAM is predicted to be the largest member of the IG superfamily. It has been demonstrated that DSCAM can mediate cation-independent homophilic intercellular adhesion.
Probab=99.22 E-value=1.7e-11 Score=82.15 Aligned_cols=62 Identities=34% Similarity=0.565 Sum_probs=46.2
Q ss_pred EEEEEEeecCCCCeeEEeeCCEEc-C-------CCCeeEeceEEecccceeEEEEEcccccCCCeEEEEEEEcCCEEE
Q psy15667 20 VSLKCIASGNPTPDIGWTLDGFEL-P-------TNNRFVIGQFVSGHGDVISHVNISHVTVEDGGEYACVAENRAGTC 89 (286)
Q Consensus 20 ~~l~C~~~g~p~p~v~W~~~~~~l-~-------~~~~~~~~~~~~~~~~~~~~l~I~~~~~~D~G~Y~C~a~n~~g~~ 89 (286)
++|.|.+.|.|.|.+.|++++... + .+.++.+ ..+ ..|.|.++..+|+|.|+|.|.|..|..
T Consensus 1 v~l~C~~~G~P~P~v~W~~~~~~~~~~~~~~~~~~~r~~~----~~~----~~L~I~~v~~~D~G~Y~C~a~N~~G~~ 70 (79)
T cd05734 1 VTLNCSAEGYPPPTIVWKHSKGRGHPQHTHTCCLAGRIQL----LSN----GSLLIKHVLEEDSGYYLCKVSNDVGAD 70 (79)
T ss_pred CEeEeeCeEeCCCEEEEEECCCccccccccccccCCCEEE----ecC----CeEEECcCCcccCEEEEEEEEeCCCCC
Confidence 579999999999999999975321 1 2233321 111 248899999999999999999988753
No 188
>cd07701 Ig1_Necl-3 First (N-terminal) immunoglobulin (Ig)-like domain of nectin-like molecule-3 (Necl-3, also known as cell adhesion molecule 2 (CADM2)). Ig1_Necl-3: domain similar to the N-terminal immunoglobulin (Ig)-like domain of nectin-like molecule-3, Necl-3 (also known as cell adhesion molecule 2 (CADM2), SynCAM2, IGSF4D). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). They all have an extracellular region containing three Ig-like domains, a transmembrane region, and a cytoplasmic region. The N-terminal Ig-like domain of the extracellular region, belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-3 accumulates in central and peripheral nervous system tissue, and has been shown to selectively interact with oligodendrocytes.
Probab=99.22 E-value=1.1e-10 Score=80.95 Aligned_cols=90 Identities=20% Similarity=0.295 Sum_probs=56.5
Q ss_pred ceEEecCCCEEEEeeEeeecCCeEEEEEcCCcccccccccCCCCCCCeEEEEEeeecCCCCCeEEEEeCCeeCCCCCCce
Q psy15667 163 KVTAIDGEGLSIKCPVAGYPIEEVHWEKVPPKIESFAFPFDGLPEGARTRVICGVTHGDPPLTIRWLKDGKPLSPRFPVN 242 (286)
Q Consensus 163 ~~~~~~g~~~~l~c~~~~~p~~~v~w~~~~~~~~~~~~~~~~~~~g~~~~l~c~~~~~~p~~~~~W~~~g~~~~~~~~~~ 242 (286)
++.+.+|+++.|.|.+.+.|.+.+.|.+.... .- ++++.......++.
T Consensus 6 ~v~v~eG~~v~L~C~~~~~p~~~v~W~~~~~~-------------------------------~l-~~~~~~~~~~~r~~ 53 (95)
T cd07701 6 NVTVVEGGTANLTCRVDQNDNTSLQWSNPAQQ-------------------------------TL-YFDDKKALRDNRIE 53 (95)
T ss_pred eEEEecCCcEEEEEEEecCCceEEEEeCCCCe-------------------------------EE-EEcCcccccCCCEE
Confidence 46677888888888888777777777642110 00 11111111222333
Q ss_pred eeecCCCeeeEEEcccCCCCCeEEEEEEEecccceeeEEEEEE
Q psy15667 243 VSDLDSFSSLLSINSVSAAHSGEYTCVASNTAAQARYSSKLQV 285 (286)
Q Consensus 243 ~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~N~~g~~~~~~~L~V 285 (286)
..........|.|.++..+|+|.|+|.+.+.. ....++.|+|
T Consensus 54 ~~~~~~~~~sL~I~~v~~~DsG~Y~C~~~t~~-~~~~~~~l~v 95 (95)
T cd07701 54 LVRASWHELSISISDVSLSDEGQYTCSLFTMP-VKTSKAYLTV 95 (95)
T ss_pred EEECCCCcEEEEECcCCcccCEEEEEEeEeec-CccEEEEEEC
Confidence 22221234689999999999999999999954 4478888876
No 189
>cd05753 Ig2_FcgammaR_like Second immunoglobulin (Ig)-like domain of Fcgamma-receptors (FcgammaRs) and similar proteins. Ig2_FcgammaR_like: domain similar to the second immunoglobulin (Ig)-like domain of Fcgamma-receptors (FcgammaRs). Interactions between IgG and FcgammaR are important to the initiation of cellular and humoral response. IgG binding to FcgammaR leads to a cascade of signals and ultimately to functions such as antibody-dependent-cellular-cytotoxicity (ADCC), endocytosis, phagocytosis, release of inflammatory mediators, etc. FcgammaR has two Ig-like domains. This group also contains FcepsilonRI, which binds IgE with high affinity.
Probab=99.20 E-value=8.8e-11 Score=79.34 Aligned_cols=65 Identities=23% Similarity=0.298 Sum_probs=52.3
Q ss_pred CCCCCCeEEEEEeeecCCCCCeEEEEeCCeeCCCCCCceeeecCCCeeeEEEcccCCCCCeEEEEEEEecccce
Q psy15667 204 GLPEGARTRVICGVTHGDPPLTIRWLKDGKPLSPRFPVNVSDLDSFSSLLSINSVSAAHSGEYTCVASNTAAQA 277 (286)
Q Consensus 204 ~~~~g~~~~l~c~~~~~~p~~~~~W~~~g~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~N~~g~~ 277 (286)
.+.+|+.+.|.|.+..+.+.+.+.|+|+|..+... .....|.|.+++.+|+|.|+|.|.|..|..
T Consensus 10 ~V~~G~~vtL~C~~~~~~~~~~~~w~k~g~~~~~~---------~~~~~l~I~~~~~~dsG~Y~C~~~~~~~~~ 74 (83)
T cd05753 10 VVFEGEPLVLRCHGWKNKPVYKVTYYRDGKAKKYS---------HSNSNLSIPQATLSDSGSYHCSGIIGSYDY 74 (83)
T ss_pred eecCCCCEEEEeeCCCCCcceEEEEEECCeEcccc---------CCCceEEECccCHHHCEEEEEEEEeCCcee
Confidence 47789999999987656677889999999866421 113579999999999999999999998743
No 190
>smart00408 IGc2 Immunoglobulin C-2 Type.
Probab=99.19 E-value=1.4e-10 Score=73.63 Aligned_cols=63 Identities=51% Similarity=0.927 Sum_probs=49.9
Q ss_pred CCCcEEEEEEeecCCCCeeEEeeCCEEcCCCCeeEeceEEecccceeEEEEEcccccCCCeEEEEEEEcCCE
Q psy15667 16 PGPAVSLKCIASGNPTPDIGWTLDGFELPTNNRFVIGQFVSGHGDVISHVNISHVTVEDGGEYACVAENRAG 87 (286)
Q Consensus 16 ~G~~~~l~C~~~g~p~p~v~W~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~I~~~~~~D~G~Y~C~a~n~~g 87 (286)
+|++++|.|.+.+.|.+.+.|++++..+....+. . ... ..|.|.++...|+|.|+|.+.|..|
T Consensus 1 ~g~~~~l~C~~~~~~~~~v~W~~~~~~~~~~~~~------~-~~~--~~L~i~~~~~~d~G~Y~C~~~n~~g 63 (63)
T smart00408 1 EGQSVTLTCPAEGDPVPNITWLKDGKPLPESNRL------S-ASG--STLTIKSVSLEDSGEYTCVAENSAG 63 (63)
T ss_pred CCceEEEEeeCccCCCCeEEEEECCEECCCCCEE------e-cCC--cEEEEeeCCcccCEEEEEEEecCCC
Confidence 5899999999989999999999999888721111 1 111 2488999999999999999998754
No 191
>cd07690 Ig1_CD4 First immunoglobulin (Ig) domain of CD4. Ig1_CD4; first immunoglobulin (Ig) domain of CD4. CD4 and CD8 are the two primary co-receptor proteins found on the surface of T cells, and the presence of either CD4 or CD8 determines the function of the T cell. CD4 is found on helper T cells, where it is required for the binding of MHC (major histocompatibility complex) class II molecules, while CD8 is found on cytotoxic T cells, where it is required for the binding of MHC class I molecules. CD4 contains four immunoglobulin domains, with the first three included in this hierarchy. The fourth domain has a general Ig architecture, but has slight topological changes in the arrangement of beta strands relative to the other structures in this family and is not specifically included in the hierarchy.
Probab=99.19 E-value=7.6e-11 Score=81.16 Aligned_cols=78 Identities=19% Similarity=0.263 Sum_probs=55.5
Q ss_pred ccccCCCcEEEEEEeecCCCCeeEEeeCCEEc-C-C------------CCeeEeceEEecccceeEEEEEcccccCCCeE
Q psy15667 12 QTLQPGPAVSLKCIASGNPTPDIGWTLDGFEL-P-T------------NNRFVIGQFVSGHGDVISHVNISHVTVEDGGE 77 (286)
Q Consensus 12 ~~~~~G~~~~l~C~~~g~p~p~v~W~~~~~~l-~-~------------~~~~~~~~~~~~~~~~~~~l~I~~~~~~D~G~ 77 (286)
+.+.+|++|+|.|...+.|.+.+.|+++++.. . . .+|+.... ...+.....|+|.+++.+|+|+
T Consensus 2 v~~~~G~~VtL~C~~s~~~~~~i~W~~~~~k~~~g~~~~l~~~~~~~~~~r~~~~~--~~~~~g~~~L~I~~l~~sDsgt 79 (94)
T cd07690 2 VLGKKGDTAELPCTASQKKSIQFHWKNSNQIKILGNQGSFLTKGPSKLNDRADSRR--NLWDQGSFPLIIKNLKIEDSDT 79 (94)
T ss_pred eEeeCCCCEEEEEEeCCCCCcEEEEEECCcEEccCcCCEEEEecccccCCCCceec--ccCCCCeEEEEECCCCHHHCEE
Confidence 45789999999999999999999999876332 1 1 11221110 0011223469999999999999
Q ss_pred EEEEEEcCCEEEEE
Q psy15667 78 YACVAENRAGTCEI 91 (286)
Q Consensus 78 Y~C~a~n~~g~~~~ 91 (286)
|.|.+.|..+..++
T Consensus 80 Y~C~v~~~~~~~~~ 93 (94)
T cd07690 80 YICEVEDKKEEVEL 93 (94)
T ss_pred EEEEECCccceEEe
Confidence 99999998877653
No 192
>cd05845 Ig2_L1-CAM_like Second immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM) and similar proteins. Ig2_L1-CAM_like: domain similar to the second immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains, five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth.
Probab=99.19 E-value=5.2e-11 Score=81.64 Aligned_cols=79 Identities=19% Similarity=0.347 Sum_probs=60.4
Q ss_pred CCeeEec-cccccccCCCcEEEEEE-eecCCCCeeEEeeCCEE-cCCCCeeEeceEEecccceeEEEEEcccccCCCe-E
Q psy15667 2 PPILTYS-FIEQTLQPGPAVSLKCI-ASGNPTPDIGWTLDGFE-LPTNNRFVIGQFVSGHGDVISHVNISHVTVEDGG-E 77 (286)
Q Consensus 2 ~p~~~~~-~~~~~~~~G~~~~l~C~-~~g~p~p~v~W~~~~~~-l~~~~~~~~~~~~~~~~~~~~~l~I~~~~~~D~G-~ 77 (286)
.|+|... ...+.+.+|+.+.|.|. ..|.|.|.|.|++++.. +..+.|+.++ ..| .|.|.+++.+|+| .
T Consensus 2 ~~~~~~~~~~~v~V~eG~~~~L~C~pP~g~P~P~i~W~~~~~~~i~~~~Ri~~~----~~G----nL~fs~v~~~D~g~~ 73 (95)
T cd05845 2 TPKWPKEKIRPVEVEEGDSVVLPCNPPKSAVPLRIYWMNSDLLHITQDERVSMG----QNG----NLYFANVEEQDSHPD 73 (95)
T ss_pred CCcCCccccceeEEecCCCEEEEecCCCCCCCCEEEEECCCCccccccccEEEC----CCc----eEEEEEEehhhCCCC
Confidence 4566644 35568999999999997 68999999999987654 4455665442 123 3889999999999 8
Q ss_pred EEEEEEcCCEE
Q psy15667 78 YACVAENRAGT 88 (286)
Q Consensus 78 Y~C~a~n~~g~ 88 (286)
|.|.|.|....
T Consensus 74 Y~C~a~~~~~~ 84 (95)
T cd05845 74 YICHAHFPGLR 84 (95)
T ss_pred eEEEEEccccc
Confidence 99999997543
No 193
>cd04979 Ig_Semaphorin_C Immunoglobulin (Ig)-like domain of semaphorin. Ig_Semaphorin_C; Immunoglobulin (Ig)-like domain in semaphorins. Semaphorins are transmembrane protein that have important roles in a variety of tissues. Functionally, semaphorins were initially characterized for their importance in the development of the nervous system and in axonal guidance. Later they have been found to be important for the formation and functioning of the cardiovascular, endocrine, gastrointestinal, hepatic, immune, musculoskeletal, renal, reproductive, and respiratory systems. Semaphorins function through binding to their receptors and transmembrane semaphorins also serves as receptors themselves. Although molecular mechanism of semaphorins is poorly understood, the Ig-like domains may involve in ligand binding or dimerization.
Probab=99.16 E-value=2.3e-10 Score=78.56 Aligned_cols=76 Identities=28% Similarity=0.378 Sum_probs=54.0
Q ss_pred CCCCCeEEEEEeeecCCCCCeEEEEeCCeeCCCCC--CceeeecCCCeeeEEEcccCCCCCeEEEEEEEecc-cceeeEE
Q psy15667 205 LPEGARTRVICGVTHGDPPLTIRWLKDGKPLSPRF--PVNVSDLDSFSSLLSINSVSAAHSGEYTCVASNTA-AQARYSS 281 (286)
Q Consensus 205 ~~~g~~~~l~c~~~~~~p~~~~~W~~~g~~~~~~~--~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~N~~-g~~~~~~ 281 (286)
+.+|+.+.|.|.+. + |.+.+.|+|++..+.... ...+... ...|.|.++..+|+|.|+|.|.|.. +....+.
T Consensus 8 v~~g~~v~L~C~~~-~-p~~~i~W~k~~~~~~~~~~~~~~~~~~---~~~L~I~~~~~~D~G~Y~C~a~~~~~~~~~~~~ 82 (89)
T cd04979 8 VVEGNSVFLECSPK-S-NLASVVWLFQGGPLQRKEEPEERLLVT---EDGLLIRSVSPADAGVYTCQSVEHGFKQTLATY 82 (89)
T ss_pred EECCCcEEEEEeCC-C-CCceEEEEECCcccccccCcCceEEEc---CCCEEEccCCHHHCEEEEEEEecCccceeEeEE
Confidence 45678888888764 3 677899999998765432 1122221 2358899999999999999999865 5666666
Q ss_pred EEEE
Q psy15667 282 KLQV 285 (286)
Q Consensus 282 ~L~V 285 (286)
.|.|
T Consensus 83 ~l~V 86 (89)
T cd04979 83 SLNV 86 (89)
T ss_pred EEEE
Confidence 6665
No 194
>cd05727 Ig2_Contactin-2-like Second Ig domain of the neural cell adhesion molecule contactin-2 and similar proteins. Ig2_Contactin-2-like: second Ig domain of the neural cell adhesion molecule contactin-2. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-2 (aliases TAG-1, axonin-1) facilitates cell adhesion by homophilic binding between molecules in apposed membranes. The first four Ig domains form the intermolecular binding fragment which arranges as a compact U-shaped module by contacts between Ig domains 1 and 4, and domains 2 and 3. It has been proposed that a linear zipper-like array forms, from contactin-2 molecules alternatively provided by the two apposed membranes.
Probab=99.16 E-value=7.4e-11 Score=81.04 Aligned_cols=70 Identities=27% Similarity=0.523 Sum_probs=53.5
Q ss_pred ccccCCCcEEEEEE-eecCCCCeeEEeeCCEEc--CCCCeeEeceEEecccceeEEEEEcccccCCCeEEEEEEEcCCEE
Q psy15667 12 QTLQPGPAVSLKCI-ASGNPTPDIGWTLDGFEL--PTNNRFVIGQFVSGHGDVISHVNISHVTVEDGGEYACVAENRAGT 88 (286)
Q Consensus 12 ~~~~~G~~~~l~C~-~~g~p~p~v~W~~~~~~l--~~~~~~~~~~~~~~~~~~~~~l~I~~~~~~D~G~Y~C~a~n~~g~ 88 (286)
..+.+|+.++|.|. -.|.|.+.+.|++|+.++ ..+.|..+++ ..| .|.|.+++.+|+|.|+|.|+|....
T Consensus 13 ~~v~eG~~~~L~C~pP~g~P~p~~~W~k~~~~~~~~~d~r~~~~~---~~G----~L~fs~v~~~D~g~Y~C~A~n~~~~ 85 (96)
T cd05727 13 VKVKEGWGVVLFCDPPPHYPDLSYRWLLNEFPNFIPEDGRRFVSQ---TNG----NLYIAKVEASDRGNYSCFVSSPSST 85 (96)
T ss_pred eeeeeCCcEEEeeCCCCCCCCCEEEEEECCcccccccCCCeEEeC---CCC----cEEEeecCHhhCceeEEEEEecccC
Confidence 46889999999995 557899999999998764 3344433221 133 3889999999999999999997543
No 195
>cd05885 Ig2_Necl-4 Second immunoglobulin (Ig)-like domain of nectin-like molecule-4 (Necl-4, also known as cell adhesion molecule 4 (CADM4)). Ig2_Necl-4: second immunoglobulin (Ig)-like domain of nectin-like molecule-4 (Necl-4, also known as cell adhesion molecule 4 (CADM4)). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1-Necl-5). These have an extracellular region containing three Ig-like domains, one transmembrane region, and one cytoplasmic region. Ig domains are likely to participate in ligand binding and recognition. Necl-4 is expressed on Schwann cells, and plays a key part in initiating peripheral nervous system (PNS) myelination. In injured peripheral nerve cells, the mRNA signal for both Necl-4 and Necl-5 was observed to be elevated. Necl-4 participates in cell-cell adhesion and is proposed to play a role in tumor suppression.
Probab=99.16 E-value=4.7e-10 Score=74.34 Aligned_cols=66 Identities=21% Similarity=0.318 Sum_probs=50.4
Q ss_pred EEEEEeeecCCCCCeEEEEeCCeeCCCCCCceeee-cCCCeeeEEEcccCCCCCeEEEEEEEecccc
Q psy15667 211 TRVICGVTHGDPPLTIRWLKDGKPLSPRFPVNVSD-LDSFSSLLSINSVSAAHSGEYTCVASNTAAQ 276 (286)
Q Consensus 211 ~~l~c~~~~~~p~~~~~W~~~g~~~~~~~~~~~~~-~~~~~~~L~i~~v~~~d~G~Y~C~a~N~~g~ 276 (286)
+.|.|....+.|++.|+|+||++++.......... .....++|.|.....+|++.|+|.|.|.++.
T Consensus 2 ~~L~C~s~~skP~a~i~W~k~~~~l~~~~~~~~~~~~~t~~s~L~~~~~~~Ddg~~~~C~A~n~a~~ 68 (80)
T cd05885 2 VELTCLSPRSKPAATLRWYRDRKELKGVISQQENGKTVSVSNTIRFPVDRKDDGAILSCEASHPALV 68 (80)
T ss_pred EEEEEeCCCccCCCeEEEEECCEECCCCcccccCCceEEEEEEEEEEeeeccCCcEEEEEEEChhhC
Confidence 57899999999999999999999996432111000 0012457999999999999999999999865
No 196
>cd05862 Ig1_VEGFR First immunoglobulin (Ig)-like domain of vascular endothelial growth factor (VEGF) receptor(R). IG1_VEGFR: first immunoglobulin (Ig)-like domain of vascular endothelial growth factor (VEGF) receptor(R). The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. The VEGFR family consists of three members, VEGFR-1 (Flt-1), VEGFR-2 (KDR/Flk-1) and VEGFR-3 (Flt-4). VEGF_A interacts with both VEGFR-1 and VEGFR-2. VEGFR-1 binds strongest to VEGF, VEGF-2 binds more weakly. VEGFR-3 appears not to bind VEGF, but binds other members of the VEGF family (VEGF-C and -D). VEGFRs bind VEGFs with high affinity with the IG-like domains. VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGFR-2 is a major mediator of the mitogenic, angioge
Probab=99.16 E-value=2.6e-10 Score=77.58 Aligned_cols=36 Identities=39% Similarity=0.524 Sum_probs=33.7
Q ss_pred eeeEEEcccCCCCCeEEEEEEEecccceeeEEEEEE
Q psy15667 250 SSLLSINSVSAAHSGEYTCVASNTAAQARYSSKLQV 285 (286)
Q Consensus 250 ~~~L~i~~v~~~d~G~Y~C~a~N~~g~~~~~~~L~V 285 (286)
...|.|.++..+|+|.|+|.|.|..|....++.|.|
T Consensus 49 ~s~L~I~~~~~~DsG~Y~C~a~n~~~~~~~~t~~~V 84 (86)
T cd05862 49 SSTLTIENVTLSDLGRYTCTASSGQMIAKNSTIVIV 84 (86)
T ss_pred eeEEEEecCCcccCEEEEEEEeecceEecccEEEEE
Confidence 568999999999999999999999999999999887
No 197
>cd05757 Ig2_IL1R_like Second immunoglobulin (Ig)-like domain of interleukin-1 receptor (IL1R) and similar proteins. Ig2_IL1R_like: domain similar to the second immunoglobulin (Ig)-like domain of interleukin-1 receptor (IL1R). IL-1 alpha and IL-1 beta are cytokines which participate in the regulation of inflammation, immune responses, and hematopoiesis. These cytokines bind to the IL-1 receptor type 1 (IL1R1), which is activated on additional association with an accessory protein, IL1RAP. IL-1 also binds a second receptor designated type II (IL1R2). Mature IL1R1 consists of three IG-like domains, a transmembrane domain, and a large cytoplasmic domain. Mature IL1R2 is organized similarly except that it has a short cytoplasmic domain. The latter does not initiate signal transduction. A naturally occurring cytokine IL-1RA (IL-1 receptor antagonist) is widely expressed and binds to IL-1 receptors, inhibiting the binding of IL-1 alpha and IL-1 beta. This group also contains ILIR-like 1 (IL1
Probab=99.15 E-value=7.1e-11 Score=81.23 Aligned_cols=70 Identities=24% Similarity=0.366 Sum_probs=54.9
Q ss_pred cccccCCCcEEEEEEeec-----CCCCeeEEeeCCEEcCCCCeeEeceEEecccceeEEEEEcccccCCCeEEEEEEEcC
Q psy15667 11 EQTLQPGPAVSLKCIASG-----NPTPDIGWTLDGFELPTNNRFVIGQFVSGHGDVISHVNISHVTVEDGGEYACVAENR 85 (286)
Q Consensus 11 ~~~~~~G~~~~l~C~~~g-----~p~p~v~W~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~I~~~~~~D~G~Y~C~a~n~ 85 (286)
.+.+.+|+++.|.|...+ +|.|.+.|+||+.++..+.+... .+. .|.|.++..+|+|.|+|.|.|.
T Consensus 4 ~~~~~~g~~~~l~Cp~~~~~~~~~~~p~i~Wyk~~~~i~~~~~~~~------~~~---~L~I~~v~~~DsG~YtC~~~n~ 74 (92)
T cd05757 4 KQILFSTKGGKIVCPDLDDFKNENTLPPVQWYKDCKLLEGDRKRFV------KGS---KLLIQNVTEEDAGNYTCKLTFT 74 (92)
T ss_pred eEEEeeccCCEEECCChHHccCCCCCCcEEEeECCEECCCCccEEe------cCC---EEEEeeCChhhCEEEEEEEEec
Confidence 357889999999997654 36789999999999976544321 122 4889999999999999999987
Q ss_pred CEEE
Q psy15667 86 AGTC 89 (286)
Q Consensus 86 ~g~~ 89 (286)
.+..
T Consensus 75 ~~~~ 78 (92)
T cd05757 75 HNGK 78 (92)
T ss_pred CCCE
Confidence 6543
No 198
>cd05717 Ig1_Necl-1-3_like First (N-terminal) immunoglobulin (Ig)-like domain of the nectin-like molecules Necl-1 - Necl-3 (also known as cell adhesion molecules CADM3, CADM1, and CADM2 respectively). Ig1_Necl-1-3_like: N-terminal immunoglobulin (Ig)-like domain of the nectin-like molecules Necl-1 (also known as cell adhesion molecule 3 (CADM3)), Necl-2 (CADM1), and Necl-3 (CADM2). At least five nectin-like molecules have been identified (Necl-1 - Necl-5). They all have an extracellular region containing three Ig-like domains, a transmembrane region, and a cytoplasmic region. The N-terminal Ig-like domain of the extracellular region belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-1, Necl-2, and Necl-3 have Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-1 is specifically expressed in neural tissue, and is important to the form
Probab=99.12 E-value=1.4e-09 Score=75.54 Aligned_cols=91 Identities=20% Similarity=0.394 Sum_probs=57.0
Q ss_pred CceEEecCCCEEEEeeEeeecCCeEEEEEcCCcccccccccCCCCCCCeEEEEEeeecCCCCCeEEEEeCCeeCCCCCCc
Q psy15667 162 PKVTAIDGEGLSIKCPVAGYPIEEVHWEKVPPKIESFAFPFDGLPEGARTRVICGVTHGDPPLTIRWLKDGKPLSPRFPV 241 (286)
Q Consensus 162 ~~~~~~~g~~~~l~c~~~~~p~~~v~w~~~~~~~~~~~~~~~~~~~g~~~~l~c~~~~~~p~~~~~W~~~g~~~~~~~~~ 241 (286)
..+.+.+|++++|.|.+.+.+.+.+.|.+... ...|+++...+. ..++
T Consensus 5 ~~~~v~~G~~v~L~C~~~~~~~~~v~W~~p~~-------------------------------~~~~~~~~~~~~-~~r~ 52 (95)
T cd05717 5 QDVTVVEGGTATLKCRVKNNDNSSLQWSNPNQ-------------------------------QTLYFNDKRALR-DNRI 52 (95)
T ss_pred CcEEEcCCCCEEEEEEECCCCCceEEEeCCCC-------------------------------cEEEeccccccc-cCcE
Confidence 34667789999999988887778888864210 112222222111 1223
Q ss_pred eeeecCCCeeeEEEcccCCCCCeEEEEEEEecccceeeEEEEEE
Q psy15667 242 NVSDLDSFSSLLSINSVSAAHSGEYTCVASNTAAQARYSSKLQV 285 (286)
Q Consensus 242 ~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~N~~g~~~~~~~L~V 285 (286)
.+.........|.|.+++.+|+|.|+|.+.+... ...++.|+|
T Consensus 53 ~~~~~~~~~~~L~I~~v~~~DsG~Y~C~~~~~~~-~~~~~~~~v 95 (95)
T cd05717 53 QLVNFSANELSISISNVSLSDEGRYTCSLYTMPV-QTAKATVTV 95 (95)
T ss_pred EEEcCCCCeeEEEEccCCcccCEEEEEEEecCCC-ceEEEEEEC
Confidence 2221112245799999999999999999998753 466666765
No 199
>PF00047 ig: Immunoglobulin domain The Prosite family only concerns antibodies and MHCs.; InterPro: IPR013151 Members of the immunoglobulin superfamily are found in hundreds of proteins of different functions. Examples include antibodies, the giant muscle kinase titin and receptor tyrosine kinases. Immunoglobulin-like domains may be involved in protein-protein and protein-ligand interactions. The Pfam alignments do not include the first and last strand of the immunoglobulin-like domain.; PDB: 1B6U_A 3O4O_C 3VH8_H 1BIH_A 2C9A_A 2V5Y_A 1BQH_K 2ATP_A 3B9K_A 1NEZ_H ....
Probab=99.10 E-value=2.4e-10 Score=73.19 Aligned_cols=63 Identities=35% Similarity=0.653 Sum_probs=45.9
Q ss_pred CCcEEEEEEe-ecCCCCeeEEeeCCEEcCCCCeeEeceEEecccceeEEEEEcccccCCCeEEEEEE
Q psy15667 17 GPAVSLKCIA-SGNPTPDIGWTLDGFELPTNNRFVIGQFVSGHGDVISHVNISHVTVEDGGEYACVA 82 (286)
Q Consensus 17 G~~~~l~C~~-~g~p~p~v~W~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~I~~~~~~D~G~Y~C~a 82 (286)
|++++|.|.+ .+.|.+.+.|.++++.+......... .........|.|.+++.+|+|.|+|.|
T Consensus 1 G~~v~L~C~~~~~~~~~~~~W~~~~~~~~~~~~~~~~---~~~~~~~~~L~i~~v~~~d~G~Y~C~v 64 (64)
T PF00047_consen 1 GSSVTLTCSVSSGPPPTTVTWSKNGQSLPEGSTTNRS---TNSVSSTSRLTISNVTPEDSGTYTCVV 64 (64)
T ss_dssp TSEEEEEEEEEESSSTSEEEEEETTTTTSEEEEEEEE---ETTTEEEEEEEESSCTGGGTEEEEEEE
T ss_pred CCeEEEEeecCCCCCCcEEEEEECCccccCcceeEee---cccceeeeEEEEccCCHHHCEEEEEEC
Confidence 8999999999 77888999999998766543332211 111111113999999999999999986
No 200
>cd05897 Ig2_IL1R2_like Second immunoglobulin (Ig)-like domain of interleukin-1 receptor-2 (IL1R2). Ig2_IL1R2_like: domain similar to the second immunoglobulin (Ig)-like domain of interleukin-1 receptor-2 (IL1R2). IL-1 alpha and IL-1 beta are cytokines which participate in the regulation of inflammation, immune responses, and hematopoiesis. These cytokines bind to the IL-1 receptor type 1 (IL1R1), which is activated on additional association with an accessory protein, IL1RAP. IL-1 also binds the type II (IL1R2) represented in this group. Mature IL1R2 consists of three IG-like domains, a transmembrane domain, and a short cytoplasmic domain. It lacks the large cytoplasmic domain of Mature IL1R1, and does not initiate signal transduction. A naturally occurring cytokine IL-1RA (IL-1 receptor antagonist) is widely expressed and binds to IL-1 receptors, inhibiting the binding of IL-1 alpha and IL-1 beta.
Probab=99.06 E-value=8.4e-10 Score=75.89 Aligned_cols=70 Identities=24% Similarity=0.286 Sum_probs=47.5
Q ss_pred CCCCeEEEEEeee----cCCCCCeEEEEeCCeeCCCCCCceeeecCCCeeeEEEcccCCCCCeEEEEEEEecccce
Q psy15667 206 PEGARTRVICGVT----HGDPPLTIRWLKDGKPLSPRFPVNVSDLDSFSSLLSINSVSAAHSGEYTCVASNTAAQA 277 (286)
Q Consensus 206 ~~g~~~~l~c~~~----~~~p~~~~~W~~~g~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~N~~g~~ 277 (286)
..|....|.|.-. ...+.+.+.|+||+.++....... ... .....|.|.+|..+|+|.|+|.|.|..|..
T Consensus 8 ~~~~~~~l~Cp~~~~f~~~~~~~~v~WYKd~~~l~~~~~~~-~~~-~~~~~L~I~~v~~~D~G~YtC~~~~~~~g~ 81 (95)
T cd05897 8 FTSTSGKLVCPDLSDFTINRTDVELQWYKDSVLLDKDNEKF-YSL-KGSTYLHIIDVSLNDSGYYTCKLQFTHEGK 81 (95)
T ss_pred ccccCcEEECCCHHHcccCCCCCcEEEccCCEECcCCCcce-Eec-CCCCEEEEEEcChhhCEEEEEEEEEeeCCE
Confidence 3455555555311 134667999999999886443221 111 123479999999999999999999997654
No 201
>smart00408 IGc2 Immunoglobulin C-2 Type.
Probab=99.06 E-value=1.1e-09 Score=69.44 Aligned_cols=63 Identities=51% Similarity=0.823 Sum_probs=47.8
Q ss_pred CCCeEEEEEeeecCCCCCeEEEEeCCeeCCCCCCceeeecCCCeeeEEEcccCCCCCeEEEEEEEeccc
Q psy15667 207 EGARTRVICGVTHGDPPLTIRWLKDGKPLSPRFPVNVSDLDSFSSLLSINSVSAAHSGEYTCVASNTAA 275 (286)
Q Consensus 207 ~g~~~~l~c~~~~~~p~~~~~W~~~g~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~N~~g 275 (286)
+|+.+.|.|.+ .+.+.+.+.|++++..+.. ..... .....|.|.++..+|+|.|+|.+.|..|
T Consensus 1 ~g~~~~l~C~~-~~~~~~~v~W~~~~~~~~~--~~~~~---~~~~~L~i~~~~~~d~G~Y~C~~~n~~g 63 (63)
T smart00408 1 EGQSVTLTCPA-EGDPVPNITWLKDGKPLPE--SNRLS---ASGSTLTIKSVSLEDSGEYTCVAENSAG 63 (63)
T ss_pred CCceEEEEeeC-ccCCCCeEEEEECCEECCC--CCEEe---cCCcEEEEeeCCcccCEEEEEEEecCCC
Confidence 46778888875 4677788999999987762 11111 2245899999999999999999999865
No 202
>PF13895 Ig_2: Immunoglobulin domain; PDB: 2V5R_B 2V5M_A 2V5S_B 2GI7_A 3LAF_A 4DEP_C 3O4O_B 2EC8_A 2E9W_A 1J87_A ....
Probab=99.06 E-value=8e-10 Score=73.97 Aligned_cols=69 Identities=36% Similarity=0.736 Sum_probs=54.6
Q ss_pred CeeEeccccccccCCCcEEEEEEeecCCCCeeEEeeCCEEcCCCCeeEeceEEecccceeEEEEEcccccCCCeEEEEEE
Q psy15667 3 PILTYSFIEQTLQPGPAVSLKCIASGNPTPDIGWTLDGFELPTNNRFVIGQFVSGHGDVISHVNISHVTVEDGGEYACVA 82 (286)
Q Consensus 3 p~~~~~~~~~~~~~G~~~~l~C~~~g~p~p~v~W~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~I~~~~~~D~G~Y~C~a 82 (286)
|.++..+ ..+.+|++++|.|.+.++|.+.+.|++++..+.... . .+.|.++..+|+|.|+|.+
T Consensus 2 P~l~~~~--~~v~~g~~~~l~C~~~~~p~~~~~w~~~~~~~~~~~-----------~----~~~~~~~~~~~~g~y~C~~ 64 (80)
T PF13895_consen 2 PVLSSSP--QSVEEGDSVTLTCSVSGNPPPQVQWYKNGSPINSSQ-----------N----GLFIPNVSPEDSGNYTCRA 64 (80)
T ss_dssp -EEEEES--SEEETTSEEEEEEEEESSSSSEEEEEETTEEEEEES-----------S----EEEESSEEGGGTEEEEEEE
T ss_pred cEEEccc--eEEeCCCcEEEEEEEEcccceeeeeeeeeeeeeeee-----------e----eeeeeeeccccCEEEEEEE
Confidence 5566444 678999999999999999999999999987765211 1 1557899999999999999
Q ss_pred EcCCEE
Q psy15667 83 ENRAGT 88 (286)
Q Consensus 83 ~n~~g~ 88 (286)
.+..+.
T Consensus 65 ~~~~~~ 70 (80)
T PF13895_consen 65 SNGSGS 70 (80)
T ss_dssp EETTEE
T ss_pred EeCCCC
Confidence 996653
No 203
>PF00047 ig: Immunoglobulin domain The Prosite family only concerns antibodies and MHCs.; InterPro: IPR013151 Members of the immunoglobulin superfamily are found in hundreds of proteins of different functions. Examples include antibodies, the giant muscle kinase titin and receptor tyrosine kinases. Immunoglobulin-like domains may be involved in protein-protein and protein-ligand interactions. The Pfam alignments do not include the first and last strand of the immunoglobulin-like domain.; PDB: 1B6U_A 3O4O_C 3VH8_H 1BIH_A 2C9A_A 2V5Y_A 1BQH_K 2ATP_A 3B9K_A 1NEZ_H ....
Probab=99.05 E-value=5.5e-10 Score=71.50 Aligned_cols=63 Identities=38% Similarity=0.674 Sum_probs=43.5
Q ss_pred CCeEEEEEeeecCCCCCeEEEEeCCeeCCCCCCceeeecCCCe-eeEEEcccCCCCCeEEEEEE
Q psy15667 208 GARTRVICGVTHGDPPLTIRWLKDGKPLSPRFPVNVSDLDSFS-SLLSINSVSAAHSGEYTCVA 270 (286)
Q Consensus 208 g~~~~l~c~~~~~~p~~~~~W~~~g~~~~~~~~~~~~~~~~~~-~~L~i~~v~~~d~G~Y~C~a 270 (286)
|+.+.|.|.+..+.+.+.+.|+|++..+............... ..|.|.++..+|+|.|+|.|
T Consensus 1 G~~v~L~C~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~v 64 (64)
T PF00047_consen 1 GSSVTLTCSVSSGPPPTTVTWSKNGQSLPEGSTTNRSTNSVSSTSRLTISNVTPEDSGTYTCVV 64 (64)
T ss_dssp TSEEEEEEEEEESSSTSEEEEEETTTTTSEEEEEEEEETTTEEEEEEEESSCTGGGTEEEEEEE
T ss_pred CCeEEEEeecCCCCCCcEEEEEECCccccCcceeEeecccceeeeEEEEccCCHHHCEEEEEEC
Confidence 5677788877557788899999998866443222222111111 12999999999999999986
No 204
>cd05717 Ig1_Necl-1-3_like First (N-terminal) immunoglobulin (Ig)-like domain of the nectin-like molecules Necl-1 - Necl-3 (also known as cell adhesion molecules CADM3, CADM1, and CADM2 respectively). Ig1_Necl-1-3_like: N-terminal immunoglobulin (Ig)-like domain of the nectin-like molecules Necl-1 (also known as cell adhesion molecule 3 (CADM3)), Necl-2 (CADM1), and Necl-3 (CADM2). At least five nectin-like molecules have been identified (Necl-1 - Necl-5). They all have an extracellular region containing three Ig-like domains, a transmembrane region, and a cytoplasmic region. The N-terminal Ig-like domain of the extracellular region belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-1, Necl-2, and Necl-3 have Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-1 is specifically expressed in neural tissue, and is important to the form
Probab=99.05 E-value=1.5e-09 Score=75.43 Aligned_cols=74 Identities=23% Similarity=0.403 Sum_probs=52.5
Q ss_pred cccccccCCCcEEEEEEeecCCCCeeEEeeCCEE-c-------CCCCeeEeceEEecccceeEEEEEcccccCCCeEEEE
Q psy15667 9 FIEQTLQPGPAVSLKCIASGNPTPDIGWTLDGFE-L-------PTNNRFVIGQFVSGHGDVISHVNISHVTVEDGGEYAC 80 (286)
Q Consensus 9 ~~~~~~~~G~~~~l~C~~~g~p~p~v~W~~~~~~-l-------~~~~~~~~~~~~~~~~~~~~~l~I~~~~~~D~G~Y~C 80 (286)
..++.+.+|++++|.|.+.+.|.+.+.|++.+.. + ..+.|+.... .......|.|.+++.+|+|.|.|
T Consensus 4 ~~~~~v~~G~~v~L~C~~~~~~~~~v~W~~p~~~~~~~~~~~~~~~~r~~~~~----~~~~~~~L~I~~v~~~DsG~Y~C 79 (95)
T cd05717 4 TQDVTVVEGGTATLKCRVKNNDNSSLQWSNPNQQTLYFNDKRALRDNRIQLVN----FSANELSISISNVSLSDEGRYTC 79 (95)
T ss_pred CCcEEEcCCCCEEEEEEECCCCCceEEEeCCCCcEEEeccccccccCcEEEEc----CCCCeeEEEEccCCcccCEEEEE
Confidence 3466789999999999999989999999853221 1 1234543311 11112358999999999999999
Q ss_pred EEEcCC
Q psy15667 81 VAENRA 86 (286)
Q Consensus 81 ~a~n~~ 86 (286)
.+.+..
T Consensus 80 ~~~~~~ 85 (95)
T cd05717 80 SLYTMP 85 (95)
T ss_pred EEecCC
Confidence 988754
No 205
>cd05845 Ig2_L1-CAM_like Second immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM) and similar proteins. Ig2_L1-CAM_like: domain similar to the second immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains, five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth.
Probab=99.04 E-value=6.1e-10 Score=76.37 Aligned_cols=69 Identities=20% Similarity=0.337 Sum_probs=51.1
Q ss_pred CCCCCeEEEEEeeecCCCCCeEEEEeCCeeC-CCCCCceeeecCCCeeeEEEcccCCCCCe-EEEEEEEecccce
Q psy15667 205 LPEGARTRVICGVTHGDPPLTIRWLKDGKPL-SPRFPVNVSDLDSFSSLLSINSVSAAHSG-EYTCVASNTAAQA 277 (286)
Q Consensus 205 ~~~g~~~~l~c~~~~~~p~~~~~W~~~g~~~-~~~~~~~~~~~~~~~~~L~i~~v~~~d~G-~Y~C~a~N~~g~~ 277 (286)
+.+|+.+.|.|....|.|.|.+.|.+++... ..+.++.+. ..+.|.|.+|..+|+| .|.|.|.|.+...
T Consensus 15 V~eG~~~~L~C~pP~g~P~P~i~W~~~~~~~i~~~~Ri~~~----~~GnL~fs~v~~~D~g~~Y~C~a~~~~~~~ 85 (95)
T cd05845 15 VEEGDSVVLPCNPPKSAVPLRIYWMNSDLLHITQDERVSMG----QNGNLYFANVEEQDSHPDYICHAHFPGLRT 85 (95)
T ss_pred EecCCCEEEEecCCCCCCCCEEEEECCCCccccccccEEEC----CCceEEEEEEehhhCCCCeEEEEEcccccc
Confidence 5677788888876678888999999876543 223333221 2478999999999999 8999999987543
No 206
>cd05862 Ig1_VEGFR First immunoglobulin (Ig)-like domain of vascular endothelial growth factor (VEGF) receptor(R). IG1_VEGFR: first immunoglobulin (Ig)-like domain of vascular endothelial growth factor (VEGF) receptor(R). The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. The VEGFR family consists of three members, VEGFR-1 (Flt-1), VEGFR-2 (KDR/Flk-1) and VEGFR-3 (Flt-4). VEGF_A interacts with both VEGFR-1 and VEGFR-2. VEGFR-1 binds strongest to VEGF, VEGF-2 binds more weakly. VEGFR-3 appears not to bind VEGF, but binds other members of the VEGF family (VEGF-C and -D). VEGFRs bind VEGFs with high affinity with the IG-like domains. VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGFR-2 is a major mediator of the mitogenic, angioge
Probab=99.03 E-value=1.5e-09 Score=73.79 Aligned_cols=71 Identities=24% Similarity=0.378 Sum_probs=48.1
Q ss_pred CCcEEEEEEeecCCC--CeeEEeeCCEEcCC---CCeeEeceEEecccceeEEEEEcccccCCCeEEEEEEEcCCEEE
Q psy15667 17 GPAVSLKCIASGNPT--PDIGWTLDGFELPT---NNRFVIGQFVSGHGDVISHVNISHVTVEDGGEYACVAENRAGTC 89 (286)
Q Consensus 17 G~~~~l~C~~~g~p~--p~v~W~~~~~~l~~---~~~~~~~~~~~~~~~~~~~l~I~~~~~~D~G~Y~C~a~n~~g~~ 89 (286)
|++++|.|.+.++|. ..+.|.+.++.+.. ...... ...........|.|.+++.+|+|.|+|.|.|..|..
T Consensus 1 Ge~~~L~C~~~~~~~~~~~~~W~~p~~~~~~~~~~~~~~~--~~~~~~~~~s~L~I~~~~~~DsG~Y~C~a~n~~~~~ 76 (86)
T cd05862 1 GEKLVLNCTARTELNVGIDFQWDYPGKKEQRAKSVSENRR--SLQEHTELSSTLTIENVTLSDLGRYTCTASSGQMIA 76 (86)
T ss_pred CCcEEEEEEEEeCCCCcEEEEEEcCCcccccceecccccc--cccccceeeeEEEEecCCcccCEEEEEEEeecceEe
Confidence 789999999988664 47799887754311 111000 000011234569999999999999999999987754
No 207
>cd05871 Ig_Semaphorin_classIII Immunoglobulin (Ig)-like domain of class III semaphorin. Ig_Semaphorin_class III; Immunoglobulin (Ig)-like domain of class III semaphorins. Semaphorins are classified into various classes on the basis of structural features additional to the Sema domain. Class III semaphorins are a vertebrate class having a Sema domain, an Ig domain, a short basic domain, and are secreted. They have been shown to be axonal guidance cues and have a part in the regulation of the cardiovascular, immune and respiratory systems. Sema3A, the prototype member of this class III subfamily, induces growth cone collapse and is an inhibitor of axonal sprouting. In perinatal rat cortex as a chemoattractant, it functions to direct, for pyramidal neurons, the orientated extension of apical dendrites. It may play a role, prior to the development of apical dendrites, in signaling the radial migration of newborn cortical neurons towards the upper layers. Sema3A selectively inhibits vascula
Probab=99.03 E-value=2.3e-09 Score=73.67 Aligned_cols=74 Identities=22% Similarity=0.262 Sum_probs=51.5
Q ss_pred CCCCCeEEEEEeeecCCCCCeEEEEeCCe--eCC----CCCCceeeecCCCeeeEEEcccCCCCCeEEEEEEE-ecccce
Q psy15667 205 LPEGARTRVICGVTHGDPPLTIRWLKDGK--PLS----PRFPVNVSDLDSFSSLLSINSVSAAHSGEYTCVAS-NTAAQA 277 (286)
Q Consensus 205 ~~~g~~~~l~c~~~~~~p~~~~~W~~~g~--~~~----~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~-N~~g~~ 277 (286)
..+|+.+.|.|.. +.|.+.+.|+|.+. ... ...+... ....|.|.++.++|+|.|+|.|. |..+..
T Consensus 8 ~~eG~~v~L~C~~--~~p~p~v~Wykq~~g~~~~~~~~~~~r~~~-----~~~~L~I~~~~~~DsG~Y~C~a~~~~~~~~ 80 (91)
T cd05871 8 GVENNSTFLECLP--KSPQASVKWLFQRGGDQRKEEVKTEERLIH-----TERGLLLRSLQRSDAGVYTCTAVEHSFSQT 80 (91)
T ss_pred EecCCcEEEEEEC--CCCCceEEEEEECCCCCccccccccccEEE-----ecCeEEEeeCChhHCEEEEEEEEccCCeEE
Confidence 4567888888874 36778889987332 211 1112211 12458999999999999999998 567777
Q ss_pred eeEEEEEE
Q psy15667 278 RYSSKLQV 285 (286)
Q Consensus 278 ~~~~~L~V 285 (286)
...+.|.|
T Consensus 81 ~~~~~l~v 88 (91)
T cd05871 81 LAKYTLHV 88 (91)
T ss_pred EEEEEEEE
Confidence 77888876
No 208
>cd05872 Ig_Sema4B_like Immunoglobulin (Ig)-like domain of the class IV semaphorin Sema4B. Ig_Sema4B_like; Immunoglobulin (Ig)-like domain of Sema4B_like. Sema4B is a Class IV semaphorin. Semaphorins are classified based on structural features additional to the Sema domain. Sema4B has extracellular Sema and Ig domains, a transmembrane domain and a short cytoplasmic domain. Sema4B has been shown to preferentially regulate the development of the postsynaptic specialization at the glutamatergic synapses. This cytoplasmic domain includes a PDZ-binding motif upon which the synaptic localization of Sem4B is dependent. Sema4B is a ligand of CLCP1, CLCP1 was identified in an expression profiling analysis, which compared a highly metastic lung cancer subline with its low metastic parental line. Sema4B was shown to promote CLCP1 endocytosis, and their interaction is a potential target for therapeutic intervention of metastasis.
Probab=99.02 E-value=6.4e-10 Score=74.75 Aligned_cols=65 Identities=28% Similarity=0.533 Sum_probs=53.6
Q ss_pred ccccccCCCcEEEEEEeecCCCCeeEEeeCCEEcCCCCeeEeceEEecccceeEEEEEcccccCCCeEEEEEEEc
Q psy15667 10 IEQTLQPGPAVSLKCIASGNPTPDIGWTLDGFELPTNNRFVIGQFVSGHGDVISHVNISHVTVEDGGEYACVAEN 84 (286)
Q Consensus 10 ~~~~~~~G~~~~l~C~~~g~p~p~v~W~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~I~~~~~~D~G~Y~C~a~n 84 (286)
.++++.+|+.++|.|...++ .+.+.|++||.+|..+.++... ..| |.|.++..+|+|.|.|.+..
T Consensus 4 ~~~tv~~g~~v~L~C~~~s~-~A~v~W~~ng~~l~~~~r~~~~----~~G-----LlI~~~~~~dsG~Y~C~s~E 68 (85)
T cd05872 4 KNRTVAPGADVVLPCQLRSN-LASPVWLFNGTPLNAQFSYRVG----TDG-----LLILVTSPEHSGTYRCYSEE 68 (85)
T ss_pred eEEEEecCCCEEEECCCCCC-CccEEEEECCcccCCCcceEEe----CCC-----CEEEECCHhhCEEEEEEEec
Confidence 45789999999999999876 5689999999999877776532 122 66999999999999999873
No 209
>cd05860 Ig4_SCFR Fourth immunoglobulin (Ig)-like domain of stem cell factor receptor (SCFR). Ig4_SCFR: The fourth Immunoglobulin (Ig)-like domain in stem cell factor receptor (SCFR). SCFR is organized as an extracellular component having five IG-like domains, a transmembrane segment, and a cytoplasmic portion having protein tyrosine kinase activity. SCFR and its ligand SCF are critical for normal hematopoiesis, mast cell development, melanocytes and gametogenesis. SCF binds to the second and third Ig-like domains of SCFR. This fourth Ig-like domain participates in SCFR dimerization, which follows ligand binding. Deletion of this fourth domain abolishes the ligand-induced dimerization of SCFR and completely inhibits signal transduction.
Probab=99.02 E-value=3.2e-09 Score=73.10 Aligned_cols=38 Identities=26% Similarity=0.412 Sum_probs=35.3
Q ss_pred CeeeEEEcccCCCCCeEEEEEEEecccceeeEEEEEEC
Q psy15667 249 FSSLLSINSVSAAHSGEYTCVASNTAAQARYSSKLQVK 286 (286)
Q Consensus 249 ~~~~L~i~~v~~~d~G~Y~C~a~N~~g~~~~~~~L~V~ 286 (286)
....|.|.+++.+|+|.|+|.|.|+.+..+.++.|.|+
T Consensus 63 Y~S~L~L~Rlk~~E~G~YTf~a~N~~~~~s~tF~l~v~ 100 (101)
T cd05860 63 YVSELHLTRLKGTEGGTYTFLVSNSDASASVTFNVYVN 100 (101)
T ss_pred EEEEEEEeecChhhCcEEEEEEECCCCeEEEEEEEEEe
Confidence 35789999999999999999999999999999999885
No 210
>cd05860 Ig4_SCFR Fourth immunoglobulin (Ig)-like domain of stem cell factor receptor (SCFR). Ig4_SCFR: The fourth Immunoglobulin (Ig)-like domain in stem cell factor receptor (SCFR). SCFR is organized as an extracellular component having five IG-like domains, a transmembrane segment, and a cytoplasmic portion having protein tyrosine kinase activity. SCFR and its ligand SCF are critical for normal hematopoiesis, mast cell development, melanocytes and gametogenesis. SCF binds to the second and third Ig-like domains of SCFR. This fourth Ig-like domain participates in SCFR dimerization, which follows ligand binding. Deletion of this fourth domain abolishes the ligand-induced dimerization of SCFR and completely inhibits signal transduction.
Probab=99.01 E-value=3.4e-09 Score=72.94 Aligned_cols=82 Identities=15% Similarity=0.315 Sum_probs=60.0
Q ss_pred cccccCCCcEEEEEEeecCCCCe-eEEeeCCEEcCCCCeeEeceEEecccceeEEEEEcccccCCCeEEEEEEEcCCEEE
Q psy15667 11 EQTLQPGPAVSLKCIASGNPTPD-IGWTLDGFELPTNNRFVIGQFVSGHGDVISHVNISHVTVEDGGEYACVAENRAGTC 89 (286)
Q Consensus 11 ~~~~~~G~~~~l~C~~~g~p~p~-v~W~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~I~~~~~~D~G~Y~C~a~n~~g~~ 89 (286)
.+.+.+|+++.|.|.+++.|+|+ +.|.+++..+..............+..-.+.|.|..+..+|+|.|+|.|.|.....
T Consensus 12 ~~~v~~gE~~~L~V~ieAYP~p~~~~W~~~~~~l~~~~~~~~~~~~~~~~rY~S~L~L~Rlk~~E~G~YTf~a~N~~~~~ 91 (101)
T cd05860 12 TIFVNAGENLDLIVEYEAYPKPEHQQWIYMNRTLTNTSDHYVKSRNESNNRYVSELHLTRLKGTEGGTYTFLVSNSDASA 91 (101)
T ss_pred eEEEECCCCEEEEEEEEeCCCCeeeEEEcCCcccCccccceeEEeccCceEEEEEEEEeecChhhCcEEEEEEECCCCeE
Confidence 34689999999999999999997 99999988764322211111100001134569999999999999999999998877
Q ss_pred EEe
Q psy15667 90 EIT 92 (286)
Q Consensus 90 ~~~ 92 (286)
+++
T Consensus 92 s~t 94 (101)
T cd05860 92 SVT 94 (101)
T ss_pred EEE
Confidence 654
No 211
>smart00410 IG_like Immunoglobulin like. IG domains that cannot be classified into one of IGv1, IGc1, IGc2, IG.
Probab=98.98 E-value=1.3e-08 Score=68.49 Aligned_cols=80 Identities=35% Similarity=0.588 Sum_probs=58.8
Q ss_pred CCCCCeEEEEEeeecCCCCCeEEEEeC-CeeCCCCCCceeeecCCCeeeEEEcccCCCCCeEEEEEEEecccceeeEEEE
Q psy15667 205 LPEGARTRVICGVTHGDPPLTIRWLKD-GKPLSPRFPVNVSDLDSFSSLLSINSVSAAHSGEYTCVASNTAAQARYSSKL 283 (286)
Q Consensus 205 ~~~g~~~~l~c~~~~~~p~~~~~W~~~-g~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~N~~g~~~~~~~L 283 (286)
+..|+.+.|.|.+... +.+.+.|+++ +..+....+..+..... ...|.|.++..+|+|.|+|.+.|..+.....+.|
T Consensus 6 ~~~g~~~~l~C~~~~~-~~~~~~W~~~~~~~v~~~~~~~~~~~~~-~~~l~i~~~~~~d~G~Y~C~v~~~~~~~~~~~~l 83 (86)
T smart00410 6 VKEGESVTLSCEVSGS-PPPEVTWYKQGGKLLAESGRFSVSRSGS-NSTLTISNVTPEDSGTYTCAATNSSGSASSTTTL 83 (86)
T ss_pred EeCCCeEEEEEEEccC-CCCeEEEEECCCEEcCCCCcEEEEEcCC-eeEEEEEeeccccCeEEEEEEEcCCCeEEEEEEE
Confidence 3456677777766533 6778889987 77765444444433222 4689999999999999999999998888888888
Q ss_pred EEC
Q psy15667 284 QVK 286 (286)
Q Consensus 284 ~V~ 286 (286)
.|.
T Consensus 84 ~V~ 86 (86)
T smart00410 84 TVL 86 (86)
T ss_pred EEC
Confidence 774
No 212
>smart00409 IG Immunoglobulin.
Probab=98.98 E-value=1.3e-08 Score=68.49 Aligned_cols=80 Identities=35% Similarity=0.588 Sum_probs=58.8
Q ss_pred CCCCCeEEEEEeeecCCCCCeEEEEeC-CeeCCCCCCceeeecCCCeeeEEEcccCCCCCeEEEEEEEecccceeeEEEE
Q psy15667 205 LPEGARTRVICGVTHGDPPLTIRWLKD-GKPLSPRFPVNVSDLDSFSSLLSINSVSAAHSGEYTCVASNTAAQARYSSKL 283 (286)
Q Consensus 205 ~~~g~~~~l~c~~~~~~p~~~~~W~~~-g~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~N~~g~~~~~~~L 283 (286)
+..|+.+.|.|.+... +.+.+.|+++ +..+....+..+..... ...|.|.++..+|+|.|+|.+.|..+.....+.|
T Consensus 6 ~~~g~~~~l~C~~~~~-~~~~~~W~~~~~~~v~~~~~~~~~~~~~-~~~l~i~~~~~~d~G~Y~C~v~~~~~~~~~~~~l 83 (86)
T smart00409 6 VKEGESVTLSCEVSGS-PPPEVTWYKQGGKLLAESGRFSVSRSGS-NSTLTISNVTPEDSGTYTCAATNSSGSASSTTTL 83 (86)
T ss_pred EeCCCeEEEEEEEccC-CCCeEEEEECCCEEcCCCCcEEEEEcCC-eeEEEEEeeccccCeEEEEEEEcCCCeEEEEEEE
Confidence 3456677777766533 6778889987 77765444444433222 4689999999999999999999998888888888
Q ss_pred EEC
Q psy15667 284 QVK 286 (286)
Q Consensus 284 ~V~ 286 (286)
.|.
T Consensus 84 ~V~ 86 (86)
T smart00409 84 TVL 86 (86)
T ss_pred EEC
Confidence 774
No 213
>cd05896 Ig1_IL1RAPL-1_like First immunoglobulin (Ig)-like domain of X-linked interleukin-1 receptor accessory protein-like 1 (IL1RAPL-1). Ig1_ IL1RAPL-1_like: domain similar to the first immunoglobulin (Ig)-like domain of X-linked interleukin-1 receptor accessory protein-like 1 (IL1RAPL-1). IL-1 alpha and IL-1 beta are cytokines which participates in the regulation of inflammation, immune responses, and hematopoiesis. These cytokines bind to the IL-1 receptor type 1 (IL1R1), which is activated on additional association with an accessory protein, IL1RAP. IL-1 also binds a second receptor designated type II (IL1R2). Mature IL1R1 consists of three Ig-like domains, a transmembrane domain, and a large cytoplasmic domain. Mature IL1R2 is organized similarly except that it has a short cytoplasmic domain. The latter does not initiate signal transduction. A naturally occurring cytokine IL-1RA (IL-1 receptor antagonist) is widely expressed and binds to IL-1 receptors, inhibiting the binding of
Probab=98.97 E-value=3e-09 Score=73.50 Aligned_cols=63 Identities=21% Similarity=0.297 Sum_probs=44.1
Q ss_pred CCeEEEEeCCeeCCCCCCceee--ecCCCeeeEEEcccCCCCCeEEEEEEEecccceeeEEEEEE
Q psy15667 223 PLTIRWLKDGKPLSPRFPVNVS--DLDSFSSLLSINSVSAAHSGEYTCVASNTAAQARYSSKLQV 285 (286)
Q Consensus 223 ~~~~~W~~~g~~~~~~~~~~~~--~~~~~~~~L~i~~v~~~d~G~Y~C~a~N~~g~~~~~~~L~V 285 (286)
...+.|+|++..+......... ........|.|..+..+|+|.|+|++.|.-.-.+.++.|+|
T Consensus 40 ~~~v~WyK~~~~~~~~~~~~~~~~Ri~~~~~~Lwf~Pa~~eDSG~Y~C~~rN~t~C~~~~i~l~V 104 (104)
T cd05896 40 GLSLMWYKSSGDGEEPIEIIFDGVRMSKEEDSIWFRPAELQDSGLYTCVLRNSTYCMKVSMSLTV 104 (104)
T ss_pred CceEEEEECCCCCCCCCcccccceeEEEeCCEEEEEeCChhhCeEEEEEECCCCcceEEEEEEEC
Confidence 4579999997555432211100 00112457999999999999999999999877777777765
No 214
>PF13927 Ig_3: Immunoglobulin domain; PDB: 2D3V_A 1G0X_A 1VDG_A 1P7Q_D 3D2U_H 1UFU_A 1UGN_A 3VH8_H 3OQ3_B 4DKD_C ....
Probab=98.97 E-value=2.2e-09 Score=70.74 Aligned_cols=74 Identities=34% Similarity=0.568 Sum_probs=51.4
Q ss_pred CCeeEeccccccccCCCcEEEEEEeecCC-CCeeEEeeCCEEcCCCCeeEeceEEecccceeEEEEEcccccCCCeEEEE
Q psy15667 2 PPILTYSFIEQTLQPGPAVSLKCIASGNP-TPDIGWTLDGFELPTNNRFVIGQFVSGHGDVISHVNISHVTVEDGGEYAC 80 (286)
Q Consensus 2 ~p~~~~~~~~~~~~~G~~~~l~C~~~g~p-~p~v~W~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~I~~~~~~D~G~Y~C 80 (286)
||.|...+.......+. ++|+|.+.+.| .+.+.|+ +......... .........|.|.++..+|.|.|+|
T Consensus 1 kP~I~~~~~~~~~~~~~-~~l~C~~~~~~~~~~~~W~-~~~~~~~~~~-------~~~~~~~~~L~i~~v~~~~~g~y~C 71 (75)
T PF13927_consen 1 KPQISVPPPPVVTSGGS-VTLTCSAEGGPPPPSISWY-DSNPSFNSNS-------RGSSSSNSTLTISNVTRSDNGTYTC 71 (75)
T ss_dssp ESEEEEESTSEEETTEE-EEEEEEESSEESSEEEEEE-TEEEEEEEEE-------EEEEEEEEEEEESSCCGGGTEEEEE
T ss_pred CCEEEEcCCCcEeecee-EEEEEEEccccCCeEEEEE-ecCCceeeee-------eeccceeeEEEEccCCHHhCcEEEE
Confidence 57788777666666555 99999999987 8899999 2111100000 0111223469999999999999999
Q ss_pred EEEc
Q psy15667 81 VAEN 84 (286)
Q Consensus 81 ~a~n 84 (286)
.|.|
T Consensus 72 ~a~N 75 (75)
T PF13927_consen 72 IASN 75 (75)
T ss_dssp EEEE
T ss_pred EEEC
Confidence 9986
No 215
>cd05881 Ig1_Necl-2 First (N-terminal) immunoglobulin (Ig)-like domain of nectin-like molecule 2 (also known as cell adhesion molecule 1 (CADM1)). Ig1_Necl-2: domain similar to the N-terminal immunoglobulin (Ig)-like domain of nectin-like molecule-2, Necl-2 (also known as cell adhesion molecule 1 (CADM1), SynCAM1, IGSF4A, Tslc1, sgIGSF, and RA175). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). They all have an extracellular region containing three Ig-like domains, a transmembrane region, and a cytoplasmic region. The N-terminal Ig-like domain of the extracellular region, belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-2 has Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-2 is expressed in a wide variety of tissues, and is a
Probab=98.95 E-value=8e-09 Score=71.09 Aligned_cols=72 Identities=21% Similarity=0.305 Sum_probs=53.4
Q ss_pred ccccccCCCcEEEEEEeecCCCCeeEEeeCCEEc--------CCCCeeEeceEEecccceeEEEEEcccccCCCeEEEEE
Q psy15667 10 IEQTLQPGPAVSLKCIASGNPTPDIGWTLDGFEL--------PTNNRFVIGQFVSGHGDVISHVNISHVTVEDGGEYACV 81 (286)
Q Consensus 10 ~~~~~~~G~~~~l~C~~~g~p~p~v~W~~~~~~l--------~~~~~~~~~~~~~~~~~~~~~l~I~~~~~~D~G~Y~C~ 81 (286)
.++++.+|++++|+|.+.+.....+.|++-+..+ ..+.||..... .+ ...+|.|.+++.+|+|.|.|.
T Consensus 5 ~nvtv~~G~ta~L~C~v~~~~~~~v~w~~~~~~~i~~~~~~~~~d~Rf~~~~~---~~-~~~tL~I~~vq~~D~G~Y~Cq 80 (95)
T cd05881 5 EDVTVVEGEVAIISCRVKNNDDSVIQLLNPNRQTIYFRDVRPLKDSRFQLVNF---SS-NELRVSLSNVSLSDEGRYFCQ 80 (95)
T ss_pred CceEEcCCCcEEEEEEEccCCccEEEEEecCCcEEEecCccccCCcCEEEEeC---CC-CEEEEEECcCCcccCEEEEEE
Confidence 4578999999999999998866677777655322 35677754321 22 234699999999999999999
Q ss_pred EEcC
Q psy15667 82 AENR 85 (286)
Q Consensus 82 a~n~ 85 (286)
+...
T Consensus 81 v~t~ 84 (95)
T cd05881 81 LYTD 84 (95)
T ss_pred EEcc
Confidence 8763
No 216
>PF13895 Ig_2: Immunoglobulin domain; PDB: 2V5R_B 2V5M_A 2V5S_B 2GI7_A 3LAF_A 4DEP_C 3O4O_B 2EC8_A 2E9W_A 1J87_A ....
Probab=98.95 E-value=3.4e-09 Score=70.87 Aligned_cols=70 Identities=36% Similarity=0.700 Sum_probs=53.5
Q ss_pred CCCCCCeEEEEEeeecCCCCCeEEEEeCCeeCCCCCCceeeecCCCeeeEEEcccCCCCCeEEEEEEEecc-cceeeEEE
Q psy15667 204 GLPEGARTRVICGVTHGDPPLTIRWLKDGKPLSPRFPVNVSDLDSFSSLLSINSVSAAHSGEYTCVASNTA-AQARYSSK 282 (286)
Q Consensus 204 ~~~~g~~~~l~c~~~~~~p~~~~~W~~~g~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~N~~-g~~~~~~~ 282 (286)
.+.+|+.+.|.|.+. +.|.+.+.|++++..+... ...+.|..+..+|+|.|+|.|.|.. +..+.++.
T Consensus 10 ~v~~g~~~~l~C~~~-~~p~~~~~w~~~~~~~~~~-----------~~~~~~~~~~~~~~g~y~C~~~~~~~~~~s~~~~ 77 (80)
T PF13895_consen 10 SVEEGDSVTLTCSVS-GNPPPQVQWYKNGSPINSS-----------QNGLFIPNVSPEDSGNYTCRASNGSGSNTSTSVN 77 (80)
T ss_dssp EEETTSEEEEEEEEE-SSSSSEEEEEETTEEEEEE-----------SSEEEESSEEGGGTEEEEEEEEETTEEEEEEEEE
T ss_pred EEeCCCcEEEEEEEE-cccceeeeeeeeeeeeeee-----------eeeeeeeeeccccCEEEEEEEEeCCCCeEeeeEE
Confidence 356788888888876 7777899999998766421 1126788999999999999999955 56667777
Q ss_pred EEE
Q psy15667 283 LQV 285 (286)
Q Consensus 283 L~V 285 (286)
|+|
T Consensus 78 v~V 80 (80)
T PF13895_consen 78 VTV 80 (80)
T ss_dssp EEE
T ss_pred eeC
Confidence 765
No 217
>cd05897 Ig2_IL1R2_like Second immunoglobulin (Ig)-like domain of interleukin-1 receptor-2 (IL1R2). Ig2_IL1R2_like: domain similar to the second immunoglobulin (Ig)-like domain of interleukin-1 receptor-2 (IL1R2). IL-1 alpha and IL-1 beta are cytokines which participate in the regulation of inflammation, immune responses, and hematopoiesis. These cytokines bind to the IL-1 receptor type 1 (IL1R1), which is activated on additional association with an accessory protein, IL1RAP. IL-1 also binds the type II (IL1R2) represented in this group. Mature IL1R2 consists of three IG-like domains, a transmembrane domain, and a short cytoplasmic domain. It lacks the large cytoplasmic domain of Mature IL1R1, and does not initiate signal transduction. A naturally occurring cytokine IL-1RA (IL-1 receptor antagonist) is widely expressed and binds to IL-1 receptors, inhibiting the binding of IL-1 alpha and IL-1 beta.
Probab=98.94 E-value=2.1e-09 Score=73.92 Aligned_cols=71 Identities=24% Similarity=0.386 Sum_probs=53.1
Q ss_pred cccccCCCcEEEEEE-ee----cCCCCeeEEeeCCEEcCCCC-eeEeceEEecccceeEEEEEcccccCCCeEEEEEEEc
Q psy15667 11 EQTLQPGPAVSLKCI-AS----GNPTPDIGWTLDGFELPTNN-RFVIGQFVSGHGDVISHVNISHVTVEDGGEYACVAEN 84 (286)
Q Consensus 11 ~~~~~~G~~~~l~C~-~~----g~p~p~v~W~~~~~~l~~~~-~~~~~~~~~~~~~~~~~l~I~~~~~~D~G~Y~C~a~n 84 (286)
.+.+.+|.+..|.|. .. .++.|+++|+||+.+|..+. ++.. ..++. .|.|.++..+|+|.|+|.|.+
T Consensus 4 ~~~~~~~~~~~l~Cp~~~~f~~~~~~~~v~WYKd~~~l~~~~~~~~~-----~~~~~--~L~I~~v~~~D~G~YtC~~~~ 76 (95)
T cd05897 4 PQILFTSTSGKLVCPDLSDFTINRTDVELQWYKDSVLLDKDNEKFYS-----LKGST--YLHIIDVSLNDSGYYTCKLQF 76 (95)
T ss_pred eeEeccccCcEEECCCHHHcccCCCCCcEEEccCCEECcCCCcceEe-----cCCCC--EEEEEEcChhhCEEEEEEEEE
Confidence 367889999999995 22 34778999999999987544 3321 01221 388999999999999999999
Q ss_pred CCEE
Q psy15667 85 RAGT 88 (286)
Q Consensus 85 ~~g~ 88 (286)
..|.
T Consensus 77 ~~~g 80 (95)
T cd05897 77 THEG 80 (95)
T ss_pred eeCC
Confidence 7543
No 218
>cd05871 Ig_Semaphorin_classIII Immunoglobulin (Ig)-like domain of class III semaphorin. Ig_Semaphorin_class III; Immunoglobulin (Ig)-like domain of class III semaphorins. Semaphorins are classified into various classes on the basis of structural features additional to the Sema domain. Class III semaphorins are a vertebrate class having a Sema domain, an Ig domain, a short basic domain, and are secreted. They have been shown to be axonal guidance cues and have a part in the regulation of the cardiovascular, immune and respiratory systems. Sema3A, the prototype member of this class III subfamily, induces growth cone collapse and is an inhibitor of axonal sprouting. In perinatal rat cortex as a chemoattractant, it functions to direct, for pyramidal neurons, the orientated extension of apical dendrites. It may play a role, prior to the development of apical dendrites, in signaling the radial migration of newborn cortical neurons towards the upper layers. Sema3A selectively inhibits vascula
Probab=98.94 E-value=2.6e-09 Score=73.36 Aligned_cols=64 Identities=17% Similarity=0.346 Sum_probs=46.8
Q ss_pred cccccCCCcEEEEEEeecCCCCeeEEeeCCE--Ec----CCCCeeEeceEEecccceeEEEEEcccccCCCeEEEEEEEc
Q psy15667 11 EQTLQPGPAVSLKCIASGNPTPDIGWTLDGF--EL----PTNNRFVIGQFVSGHGDVISHVNISHVTVEDGGEYACVAEN 84 (286)
Q Consensus 11 ~~~~~~G~~~~l~C~~~g~p~p~v~W~~~~~--~l----~~~~~~~~~~~~~~~~~~~~~l~I~~~~~~D~G~Y~C~a~n 84 (286)
.+...+|+++.|.|.. +.|.|.+.|++++. .+ ..+.++.. .. ..|.|.+++.+|+|.|+|.|.+
T Consensus 5 ~~~~~eG~~v~L~C~~-~~p~p~v~Wykq~~g~~~~~~~~~~~r~~~------~~---~~L~I~~~~~~DsG~Y~C~a~~ 74 (91)
T cd05871 5 VVYGVENNSTFLECLP-KSPQASVKWLFQRGGDQRKEEVKTEERLIH------TE---RGLLLRSLQRSDAGVYTCTAVE 74 (91)
T ss_pred EEEEecCCcEEEEEEC-CCCCceEEEEEECCCCCccccccccccEEE------ec---CeEEEeeCChhHCEEEEEEEEc
Confidence 3567899999999996 58899999998432 21 12233321 11 2388999999999999999985
No 219
>KOG3515|consensus
Probab=98.94 E-value=1.3e-08 Score=92.86 Aligned_cols=271 Identities=21% Similarity=0.196 Sum_probs=150.3
Q ss_pred ccccccCCCcEEEEEEee--cCCCCeeEEeeCCEEcCC--CCeeEeceEE-ecccceeEEEEEcccccCCCeEEEEEEEc
Q psy15667 10 IEQTLQPGPAVSLKCIAS--GNPTPDIGWTLDGFELPT--NNRFVIGQFV-SGHGDVISHVNISHVTVEDGGEYACVAEN 84 (286)
Q Consensus 10 ~~~~~~~G~~~~l~C~~~--g~p~p~v~W~~~~~~l~~--~~~~~~~~~~-~~~~~~~~~l~I~~~~~~D~G~Y~C~a~n 84 (286)
.+.....+..+.+.|.+. +.|.+.+.|..++..... ..+..+.... .........+.+.....+|.|.|+|.|.|
T Consensus 105 ~e~~~~~~~vvqi~c~~~~~~~P~~nlrW~~n~r~e~~~~~~~~~~~~~a~gss~t~~s~l~~~v~Rka~~g~~tC~A~n 184 (741)
T KOG3515|consen 105 GEIFQVDKGVVQIICSAKVAGRPNPNLRWGFNNRAELNAVNQRGRVGAGALGSSYTEPSLLKQTVSRKADNGNYTCPANN 184 (741)
T ss_pred cchhhhcCCeEEEEEeecCCCCCCcceeeeeccEEeecccCCcccccccccCceeccccceeeEEEEecCCceeEccccc
Confidence 344456788999999544 578899999998764321 1111111000 00101123477888899999999999988
Q ss_pred CCE---EE------EE-----------------------------ecCCCCCeeEEEeeCCccCcCC------C---Ccc
Q psy15667 85 RAG---TC------EI-----------------------------TPYDSGPYLIAWFKDGRQIPGR------T---SST 117 (286)
Q Consensus 85 ~~g---~~------~~-----------------------------~~~~~~~~~~~W~~~g~~l~~~------~---~~~ 117 (286)
... .. .+ .....+...++|+++...+... . ...
T Consensus 185 r~s~~l~~~~~~~i~v~~~~~~~~~~~~~~~qsF~~g~~inlvc~~~gg~P~~~~~w~~~s~~~~~~sl~~~~~sg~~v~ 264 (741)
T KOG3515|consen 185 RNSPGLSFAKQLTIIVEAPCKGIGITGAQEQQSFTEGQTINLVCNAQGGNPSQQQTWYKDSRPQSESSLLSQEPSGDTVS 264 (741)
T ss_pred ccCccccccceeEeecccccccceecchhhcCcccccceEEEEehhhcCCcchhhhhccccccchhhhcccCCCCCCccc
Confidence 421 10 00 0011233578999988765321 1 111
Q ss_pred eEEEccCCCCCCe-eEEEEEEcCCcceeeeeeEEEEcCCCce-ec-CCceEEecCCCEEEEeeEee-ecCCeEEEEEcCC
Q psy15667 118 SLVINPVGREDRG-IYQCIARRSDGDVAQGSAELQLGGLPYV-RL-IPKVTAIDGEGLSIKCPVAG-YPIEEVHWEKVPP 193 (286)
Q Consensus 118 ~l~i~~v~~~d~G-~Y~C~a~~~~g~~~~~~~~l~v~~~~~~-~~-~~~~~~~~g~~~~l~c~~~~-~p~~~v~w~~~~~ 193 (286)
......+.++|.+ ...|.+.|.. ..+..+.+..++.. .+ .+...+..|....+.|...+ +|...+.|.+...
T Consensus 265 ~~~~~~~~r~~~~~~~kc~a~n~~----~~~~~tav~~~~~~~~Ist~~~~ls~g~s~r~~c~~sss~p~~~i~w~~~~~ 340 (741)
T KOG3515|consen 265 STLVLRVGRQDLQAQLKCKASNLL----AASQITAVQVKPTAVPISTSDSGLSSGRSARSSCVSSSSKPPAHIAWYKDTK 340 (741)
T ss_pred ccccccccccchhhhhhccccCcc----ccceeeecccccccccccCcccccccccccccceeccCCCCccceeeeccCc
Confidence 2222333444443 5679998821 22344555443321 12 22344667888888888765 6778899987211
Q ss_pred cccc------------------------------------------------cc-------------cccCCCCCCCeEE
Q psy15667 194 KIES------------------------------------------------FA-------------FPFDGLPEGARTR 212 (286)
Q Consensus 194 ~~~~------------------------------------------------~~-------------~~~~~~~~g~~~~ 212 (286)
.... +. .+.....+++...
T Consensus 341 ~~~~~~~~~~~t~~~~~v~~~~~~~q~~~~~~~g~v~c~a~~~~~~~~sss~~~l~~l~~p~~L~~~~~~v~~~e~d~~~ 420 (741)
T KOG3515|consen 341 MPKGSQKASSKTSNMGGVAVISHYAQPSSQQDGGQVTCPADNLELAHSSSSSFLLPVLPSPAFLVRHKTAVVAMEQDHQA 420 (741)
T ss_pred ccccccCcccCCCcccceeeEEeeecccchhcCceEEccccccccccccccceeccccCCchhhhhcccceeeccCcccc
Confidence 0000 00 0001122333333
Q ss_pred EEEeeecCCCCCeEEEEeCCeeCCCCCCceeeecCCCeeeEEEcccCCCCCeEEEEEEEecccceeeEEEEEE
Q psy15667 213 VICGVTHGDPPLTIRWLKDGKPLSPRFPVNVSDLDSFSSLLSINSVSAAHSGEYTCVASNTAAQARYSSKLQV 285 (286)
Q Consensus 213 l~c~~~~~~p~~~~~W~~~g~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~N~~g~~~~~~~L~V 285 (286)
..-.+...++.+.+.|.+.+-++.+...-..-.. .....+.+.++...|.|.|.|.|.|+.|.+.....+.+
T Consensus 421 ~~~~~~~~p~~~~~~w~~~~~~~~~~~g~~~~v~-~~~~~~s~~~v~~~d~g~y~~tatns~gg~~~~~~~~~ 492 (741)
T KOG3515|consen 421 APLPVRGAPAERTFYWTFRLYKLSQVDGGVVRVG-AGAGLGSGVNVSRSDGGSYGLTATNSPGGAQAYLLLGV 492 (741)
T ss_pred ccCcccCCCcccchhheecceecccccCceEEee-ccccccccceeeeccCCcceeeeccCCCceeeEEeecc
Confidence 3333333455678999998887765443111111 11223346678999999999999999998877665443
No 220
>smart00409 IG Immunoglobulin.
Probab=98.92 E-value=1.4e-08 Score=68.30 Aligned_cols=73 Identities=38% Similarity=0.738 Sum_probs=57.7
Q ss_pred cccccCCCcEEEEEEeecCCCCeeEEeeC-CEEcCCCCeeEeceEEecccceeEEEEEcccccCCCeEEEEEEEcCCEE
Q psy15667 11 EQTLQPGPAVSLKCIASGNPTPDIGWTLD-GFELPTNNRFVIGQFVSGHGDVISHVNISHVTVEDGGEYACVAENRAGT 88 (286)
Q Consensus 11 ~~~~~~G~~~~l~C~~~g~p~p~v~W~~~-~~~l~~~~~~~~~~~~~~~~~~~~~l~I~~~~~~D~G~Y~C~a~n~~g~ 88 (286)
...+..|++++|.|.+.+.+.+.+.|+++ +..+..+.++.... ... ...|.|.++...|+|.|.|.+.+..+.
T Consensus 3 ~~~~~~g~~~~l~C~~~~~~~~~~~W~~~~~~~v~~~~~~~~~~----~~~-~~~l~i~~~~~~d~G~Y~C~v~~~~~~ 76 (86)
T smart00409 3 SVTVKEGESVTLSCEVSGSPPPEVTWYKQGGKLLAESGRFSVSR----SGS-NSTLTISNVTPEDSGTYTCAATNSSGS 76 (86)
T ss_pred cEEEeCCCeEEEEEEEccCCCCeEEEEECCCEEcCCCCcEEEEE----cCC-eeEEEEEeeccccCeEEEEEEEcCCCe
Confidence 45678999999999999888899999998 88876555554321 111 346999999999999999999976654
No 221
>smart00410 IG_like Immunoglobulin like. IG domains that cannot be classified into one of IGv1, IGc1, IGc2, IG.
Probab=98.92 E-value=1.4e-08 Score=68.30 Aligned_cols=73 Identities=38% Similarity=0.738 Sum_probs=57.7
Q ss_pred cccccCCCcEEEEEEeecCCCCeeEEeeC-CEEcCCCCeeEeceEEecccceeEEEEEcccccCCCeEEEEEEEcCCEE
Q psy15667 11 EQTLQPGPAVSLKCIASGNPTPDIGWTLD-GFELPTNNRFVIGQFVSGHGDVISHVNISHVTVEDGGEYACVAENRAGT 88 (286)
Q Consensus 11 ~~~~~~G~~~~l~C~~~g~p~p~v~W~~~-~~~l~~~~~~~~~~~~~~~~~~~~~l~I~~~~~~D~G~Y~C~a~n~~g~ 88 (286)
...+..|++++|.|.+.+.+.+.+.|+++ +..+..+.++.... ... ...|.|.++...|+|.|.|.+.+..+.
T Consensus 3 ~~~~~~g~~~~l~C~~~~~~~~~~~W~~~~~~~v~~~~~~~~~~----~~~-~~~l~i~~~~~~d~G~Y~C~v~~~~~~ 76 (86)
T smart00410 3 SVTVKEGESVTLSCEVSGSPPPEVTWYKQGGKLLAESGRFSVSR----SGS-NSTLTISNVTPEDSGTYTCAATNSSGS 76 (86)
T ss_pred cEEEeCCCeEEEEEEEccCCCCeEEEEECCCEEcCCCCcEEEEE----cCC-eeEEEEEeeccccCeEEEEEEEcCCCe
Confidence 45678999999999999888899999998 88876555554321 111 346999999999999999999976654
No 222
>cd05759 Ig2_KIRREL3-like Second immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 (also known as Neph2). Ig2_KIRREL3-like: domain similar to the second immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 (also known as Neph2). This protein has five Ig-like domains, one transmembrane domain, and a cytoplasmic tail. Included in this group is mammalian Kirrel (Neph1), Kirrel2 (Neph3), and Drosophila RST (irregular chiasm C-roughest) protein. These proteins contain multiple Ig domains, have properties of cell adhesion molecules, and are important in organ development.
Probab=98.91 E-value=1.5e-08 Score=68.33 Aligned_cols=74 Identities=22% Similarity=0.316 Sum_probs=49.0
Q ss_pred EEEEEeeecCCCCCeEEEEeCCeeCCCCCCceeeecC----CCeeeEEEcccCCCCCeEEEEEEEecccceeeEEEEE
Q psy15667 211 TRVICGVTHGDPPLTIRWLKDGKPLSPRFPVNVSDLD----SFSSLLSINSVSAAHSGEYTCVASNTAAQARYSSKLQ 284 (286)
Q Consensus 211 ~~l~c~~~~~~p~~~~~W~~~g~~~~~~~~~~~~~~~----~~~~~L~i~~v~~~d~G~Y~C~a~N~~g~~~~~~~L~ 284 (286)
+.|.|.+..+.|.+.++|+|+|+.+............ .....|.|.....+|.|.|+|.|.|........+.++
T Consensus 2 ~~L~C~v~g~~P~~~v~W~~~g~~l~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~~~~~y~C~a~n~~l~~~~~~s~~ 79 (82)
T cd05759 2 YNLTCRARGAKPAAEIIWFRDGEVLDGATYSKELLKDGKRETTVSTLPITPSDHDTGRTFTCRARNEALPTGKETSVT 79 (82)
T ss_pred EEEEEEEeCccCCCEEEEEECCEEccCceeeeeEecCCCeEEEEEEEEEeCceecCCCEEEEEEcCccCCCCcEEEEE
Confidence 4688888767788899999999987533211111111 1134677888888899999999999875444444443
No 223
>cd05751 Ig1_LILRB1_like First immunoglobulin (Ig)-like domain found in Leukocyte Ig-like receptors (LILR)B1 (also known as LIR-1) and similar proteins. Ig1_LILRB1_like: domain similar to the first immunoglobulin (Ig)-like domain found in Leukocyte Ig-like receptors (LILR)B1 (also known as LIR-1). This group includes, LILRA5 (LIR9), an activating natural cytotoxicity receptor NKp46, and the immune-type receptor glycoprotein VI (GPVI). LILRs are a family of immunoreceptors expressed on expressed on T and B cells, on monocytes, dendritic cells, and subgroups of natural killer (NK) cells. The human LILR family contains nine proteins (LILRA1-3,and 5, and LILRB1-5). From functional assays, and as the cytoplasmic domains of various LILRs, for example LILRB1 (LIR-1), LILRB2 (LIR-2), and LILRB3 (LIR-3) contain immunoreceptor tyrosine-based inhibitory motifs (ITIMs) it is thought that LIR proteins are inhibitory receptors. Of the eight LIR family proteins, only LIR-1(LILRB1), and LIR-2 (LILRB2),
Probab=98.91 E-value=7.2e-09 Score=71.32 Aligned_cols=73 Identities=16% Similarity=0.240 Sum_probs=53.6
Q ss_pred CeeEeccccccccCCCcEEEEEEeecCCCCeeEEeeCCEEcCCCCeeEeceEEecccceeEEEEEcccccCCCeEEEEEE
Q psy15667 3 PILTYSFIEQTLQPGPAVSLKCIASGNPTPDIGWTLDGFELPTNNRFVIGQFVSGHGDVISHVNISHVTVEDGGEYACVA 82 (286)
Q Consensus 3 p~~~~~~~~~~~~~G~~~~l~C~~~g~p~p~v~W~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~I~~~~~~D~G~Y~C~a 82 (286)
|.+...+ ..+|.+|++|+|+|... .+...+.|+|+|....... . . .......|.|.+++.+|+|.|+|.+
T Consensus 3 P~L~a~p-~~vV~~G~~VtL~C~~~-~~~~~f~l~k~g~~~~~~~-~---~----~~~~~~~f~i~~v~~~~~G~Y~C~~ 72 (91)
T cd05751 3 PSLWAEP-SSVVPLGKPVTLRCQGP-YGAVEYRLYREGSTFAVKK-P---P----EPQNKAKFFIPSMKREHAGRYRCYY 72 (91)
T ss_pred CEEEecC-CCccCCCCcEEEEEecC-CCCCEEEEEECCCCccccc-c---C----CCceeEEEEccCCChhHCEEEEEEE
Confidence 4555444 56899999999999876 6778899999987644211 0 0 1111235889999999999999999
Q ss_pred EcC
Q psy15667 83 ENR 85 (286)
Q Consensus 83 ~n~ 85 (286)
.+.
T Consensus 73 ~~~ 75 (91)
T cd05751 73 RSG 75 (91)
T ss_pred ECC
Confidence 885
No 224
>cd07690 Ig1_CD4 First immunoglobulin (Ig) domain of CD4. Ig1_CD4; first immunoglobulin (Ig) domain of CD4. CD4 and CD8 are the two primary co-receptor proteins found on the surface of T cells, and the presence of either CD4 or CD8 determines the function of the T cell. CD4 is found on helper T cells, where it is required for the binding of MHC (major histocompatibility complex) class II molecules, while CD8 is found on cytotoxic T cells, where it is required for the binding of MHC class I molecules. CD4 contains four immunoglobulin domains, with the first three included in this hierarchy. The fourth domain has a general Ig architecture, but has slight topological changes in the arrangement of beta strands relative to the other structures in this family and is not specifically included in the hierarchy.
Probab=98.89 E-value=8e-09 Score=71.10 Aligned_cols=29 Identities=21% Similarity=0.345 Sum_probs=25.9
Q ss_pred eeeEEEcccCCCCCeEEEEEEEeccccee
Q psy15667 250 SSLLSINSVSAAHSGEYTCVASNTAAQAR 278 (286)
Q Consensus 250 ~~~L~i~~v~~~d~G~Y~C~a~N~~g~~~ 278 (286)
...|.|.+++.+|+|.|.|.+.|..++++
T Consensus 64 ~~~L~I~~l~~sDsgtY~C~v~~~~~~~~ 92 (94)
T cd07690 64 SFPLIIKNLKIEDSDTYICEVEDKKEEVE 92 (94)
T ss_pred eEEEEECCCCHHHCEEEEEEECCccceEE
Confidence 45699999999999999999999988764
No 225
>cd05885 Ig2_Necl-4 Second immunoglobulin (Ig)-like domain of nectin-like molecule-4 (Necl-4, also known as cell adhesion molecule 4 (CADM4)). Ig2_Necl-4: second immunoglobulin (Ig)-like domain of nectin-like molecule-4 (Necl-4, also known as cell adhesion molecule 4 (CADM4)). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1-Necl-5). These have an extracellular region containing three Ig-like domains, one transmembrane region, and one cytoplasmic region. Ig domains are likely to participate in ligand binding and recognition. Necl-4 is expressed on Schwann cells, and plays a key part in initiating peripheral nervous system (PNS) myelination. In injured peripheral nerve cells, the mRNA signal for both Necl-4 and Necl-5 was observed to be elevated. Necl-4 participates in cell-cell adhesion and is proposed to play a role in tumor suppression.
Probab=98.86 E-value=1.4e-08 Score=67.24 Aligned_cols=63 Identities=24% Similarity=0.386 Sum_probs=46.8
Q ss_pred cEEEEEEee-cCCCCeeEEeeCCEEcCCCCeeEeceEEeccc---ceeEEEEEcccccCCCeEEEEEEEcCCE
Q psy15667 19 AVSLKCIAS-GNPTPDIGWTLDGFELPTNNRFVIGQFVSGHG---DVISHVNISHVTVEDGGEYACVAENRAG 87 (286)
Q Consensus 19 ~~~l~C~~~-g~p~p~v~W~~~~~~l~~~~~~~~~~~~~~~~---~~~~~l~I~~~~~~D~G~Y~C~a~n~~g 87 (286)
.++|+|... |+|+++++|++|+++|.....- . .++ .....|.+.-...+|.+.|+|+|.|..+
T Consensus 1 ~~~L~C~s~~skP~a~i~W~k~~~~l~~~~~~-~-----~~~~~~t~~s~L~~~~~~~Ddg~~~~C~A~n~a~ 67 (80)
T cd05885 1 EVELTCLSPRSKPAATLRWYRDRKELKGVISQ-Q-----ENGKTVSVSNTIRFPVDRKDDGAILSCEASHPAL 67 (80)
T ss_pred CEEEEEeCCCccCCCeEEEEECCEECCCCccc-c-----cCCceEEEEEEEEEEeeeccCCcEEEEEEEChhh
Confidence 378999866 6899999999999999643210 0 111 1234588888888888999999999765
No 226
>cd05881 Ig1_Necl-2 First (N-terminal) immunoglobulin (Ig)-like domain of nectin-like molecule 2 (also known as cell adhesion molecule 1 (CADM1)). Ig1_Necl-2: domain similar to the N-terminal immunoglobulin (Ig)-like domain of nectin-like molecule-2, Necl-2 (also known as cell adhesion molecule 1 (CADM1), SynCAM1, IGSF4A, Tslc1, sgIGSF, and RA175). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). They all have an extracellular region containing three Ig-like domains, a transmembrane region, and a cytoplasmic region. The N-terminal Ig-like domain of the extracellular region, belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-2 has Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-2 is expressed in a wide variety of tissues, and is a
Probab=98.86 E-value=1.1e-07 Score=65.51 Aligned_cols=80 Identities=21% Similarity=0.317 Sum_probs=55.3
Q ss_pred CceEEecCCCEEEEeeEeeecCCeEEEEEcCCcccccccccCCCCCCCeEEEEEeeecCCCCCeEEEEeCCeeCCCCCCc
Q psy15667 162 PKVTAIDGEGLSIKCPVAGYPIEEVHWEKVPPKIESFAFPFDGLPEGARTRVICGVTHGDPPLTIRWLKDGKPLSPRFPV 241 (286)
Q Consensus 162 ~~~~~~~g~~~~l~c~~~~~p~~~v~w~~~~~~~~~~~~~~~~~~~g~~~~l~c~~~~~~p~~~~~W~~~g~~~~~~~~~ 241 (286)
.++++.+|++++|.|.+.+.....++|.+.. ..+-|+.+.... .+.++
T Consensus 5 ~nvtv~~G~ta~L~C~v~~~~~~~v~w~~~~-------------------------------~~~i~~~~~~~~-~d~Rf 52 (95)
T cd05881 5 EDVTVVEGEVAIISCRVKNNDDSVIQLLNPN-------------------------------RQTIYFRDVRPL-KDSRF 52 (95)
T ss_pred CceEEcCCCcEEEEEEEccCCccEEEEEecC-------------------------------CcEEEecCcccc-CCcCE
Confidence 3567778999999999988777778887432 223455554443 34455
Q ss_pred eeeecCCCeeeEEEcccCCCCCeEEEEEEEec
Q psy15667 242 NVSDLDSFSSLLSINSVSAAHSGEYTCVASNT 273 (286)
Q Consensus 242 ~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~N~ 273 (286)
.........-+|.|.++..+|+|.|.|.+...
T Consensus 53 ~~~~~~~~~~tL~I~~vq~~D~G~Y~Cqv~t~ 84 (95)
T cd05881 53 QLVNFSSNELRVSLSNVSLSDEGRYFCQLYTD 84 (95)
T ss_pred EEEeCCCCEEEEEECcCCcccCEEEEEEEEcc
Confidence 54432233457999999999999999999764
No 227
>cd05759 Ig2_KIRREL3-like Second immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 (also known as Neph2). Ig2_KIRREL3-like: domain similar to the second immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 (also known as Neph2). This protein has five Ig-like domains, one transmembrane domain, and a cytoplasmic tail. Included in this group is mammalian Kirrel (Neph1), Kirrel2 (Neph3), and Drosophila RST (irregular chiasm C-roughest) protein. These proteins contain multiple Ig domains, have properties of cell adhesion molecules, and are important in organ development.
Probab=98.86 E-value=1.9e-08 Score=67.84 Aligned_cols=65 Identities=28% Similarity=0.486 Sum_probs=45.7
Q ss_pred cEEEEEEeec-CCCCeeEEeeCCEEcCCCCeeEeceEEecccc---eeEEEEEcccccCCCeEEEEEEEcCC
Q psy15667 19 AVSLKCIASG-NPTPDIGWTLDGFELPTNNRFVIGQFVSGHGD---VISHVNISHVTVEDGGEYACVAENRA 86 (286)
Q Consensus 19 ~~~l~C~~~g-~p~p~v~W~~~~~~l~~~~~~~~~~~~~~~~~---~~~~l~I~~~~~~D~G~Y~C~a~n~~ 86 (286)
.+.|+|.+.| .|.+.++|++||++|... ...... ...+. ....|.|.....+|.|.|+|.|.|..
T Consensus 1 ~~~L~C~v~g~~P~~~v~W~~~g~~l~~~-~~~~~~--~~~~~~~~~~s~L~i~~~~~~~~~~y~C~a~n~~ 69 (82)
T cd05759 1 PYNLTCRARGAKPAAEIIWFRDGEVLDGA-TYSKEL--LKDGKRETTVSTLPITPSDHDTGRTFTCRARNEA 69 (82)
T ss_pred CEEEEEEEeCccCCCEEEEEECCEEccCc-eeeeeE--ecCCCeEEEEEEEEEeCceecCCCEEEEEEcCcc
Confidence 3689999987 698999999999988543 221111 11121 23457788888888899999998854
No 228
>cd05713 Ig_MOG_like Immunoglobulin (Ig)-like domain of myelin oligodendrocyte glycoprotein (MOG). Ig_MOG_like: immunoglobulin (Ig)-like domain of myelin oligodendrocyte glycoprotein (MOG). MOG, a minor component of the myelin sheath, is an important CNS-specific autoantigen, linked to the pathogenesis of multiple sclerosis (MS) and experimental autoimmune encephalomyelitis (EAE). It is a transmembrane protein having an extracellular Ig domain. MOG is expressed in the CNS on the outermost lamellae of the myelin sheath, and on the surface of oligodendrocytes, and may participate in the completion, compaction, and/or maintenance of myelin. This group also includes butyrophilin (BTN). BTN is the most abundant protein in bovine milk-fat globule membrane (MFGM).
Probab=98.84 E-value=6.1e-08 Score=67.97 Aligned_cols=88 Identities=23% Similarity=0.300 Sum_probs=58.4
Q ss_pred CCCEEEEeeEeeec---CCeEEEEEcCCcccccccccCCCCCCCeEEEEEeeecCCCCCeEEEEeCCeeCCC------CC
Q psy15667 169 GEGLSIKCPVAGYP---IEEVHWEKVPPKIESFAFPFDGLPEGARTRVICGVTHGDPPLTIRWLKDGKPLSP------RF 239 (286)
Q Consensus 169 g~~~~l~c~~~~~p---~~~v~w~~~~~~~~~~~~~~~~~~~g~~~~l~c~~~~~~p~~~~~W~~~g~~~~~------~~ 239 (286)
|++++|.|...... ...+.|.+.. +.+.+.|++++..... ..
T Consensus 1 G~~v~L~C~~~~~~~~~~~~v~W~k~~-----------------------------~~~~v~~~~~~~~~~~~~~~~~~~ 51 (100)
T cd05713 1 GEDAELPCHLSPKMSAEHMEVRWFRSQ-----------------------------FSPAVHLYRDGQDQYGEQMPEYRG 51 (100)
T ss_pred CCcEEEEeEEcCCCCCCeeEEEEEECC-----------------------------CceeEEEEcCCcccccccCccccc
Confidence 67899999986322 1358887632 2234566666654321 11
Q ss_pred Cceeeec--CCCeeeEEEcccCCCCCeEEEEEEEecccceeeEEEEEE
Q psy15667 240 PVNVSDL--DSFSSLLSINSVSAAHSGEYTCVASNTAAQARYSSKLQV 285 (286)
Q Consensus 240 ~~~~~~~--~~~~~~L~i~~v~~~d~G~Y~C~a~N~~g~~~~~~~L~V 285 (286)
+..+... ......|.|.+++.+|+|.|+|.+.|..+.....+.|.|
T Consensus 52 R~~~~~~~~~~~~~sL~I~~v~~~D~G~Y~C~v~~~~~~~~~~i~l~v 99 (100)
T cd05713 52 RTELLKDAIAEGSVALRIHNVRASDEGLYTCFFQSDGFYEEATVELKV 99 (100)
T ss_pred eEEeecccccCCcEEEEEEcCChhhCEEEEEEEecCCcEEEEEEEEEE
Confidence 2222111 123468999999999999999999998888888888877
No 229
>cd05872 Ig_Sema4B_like Immunoglobulin (Ig)-like domain of the class IV semaphorin Sema4B. Ig_Sema4B_like; Immunoglobulin (Ig)-like domain of Sema4B_like. Sema4B is a Class IV semaphorin. Semaphorins are classified based on structural features additional to the Sema domain. Sema4B has extracellular Sema and Ig domains, a transmembrane domain and a short cytoplasmic domain. Sema4B has been shown to preferentially regulate the development of the postsynaptic specialization at the glutamatergic synapses. This cytoplasmic domain includes a PDZ-binding motif upon which the synaptic localization of Sem4B is dependent. Sema4B is a ligand of CLCP1, CLCP1 was identified in an expression profiling analysis, which compared a highly metastic lung cancer subline with its low metastic parental line. Sema4B was shown to promote CLCP1 endocytosis, and their interaction is a potential target for therapeutic intervention of metastasis.
Probab=98.81 E-value=2.7e-08 Score=66.84 Aligned_cols=73 Identities=25% Similarity=0.443 Sum_probs=52.5
Q ss_pred CCCCCeEEEEEeeecCCCCCeEEEEeCCeeCCCCCCceeeecCCCeeeEEEcccCCCCCeEEEEEEEecccceeeEEEEE
Q psy15667 205 LPEGARTRVICGVTHGDPPLTIRWLKDGKPLSPRFPVNVSDLDSFSSLLSINSVSAAHSGEYTCVASNTAAQARYSSKLQ 284 (286)
Q Consensus 205 ~~~g~~~~l~c~~~~~~p~~~~~W~~~g~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~N~~g~~~~~~~L~ 284 (286)
+.+|..+.|.|... .+.+.+.|+++|..+..+.++.... .-|.|..+.++|+|.|.|.|. +.|-....+.+.
T Consensus 8 v~~g~~v~L~C~~~--s~~A~v~W~~ng~~l~~~~r~~~~~-----~GLlI~~~~~~dsG~Y~C~s~-E~gf~~~~~~y~ 79 (85)
T cd05872 8 VAPGADVVLPCQLR--SNLASPVWLFNGTPLNAQFSYRVGT-----DGLLILVTSPEHSGTYRCYSE-EEGFQQLVASYS 79 (85)
T ss_pred EecCCCEEEECCCC--CCCccEEEEECCcccCCCcceEEeC-----CCCEEEECCHhhCEEEEEEEe-cCCCeEEEEEEE
Confidence 55677777888653 3467999999999887655544332 236799999999999999987 556555555544
Q ss_pred E
Q psy15667 285 V 285 (286)
Q Consensus 285 V 285 (286)
+
T Consensus 80 l 80 (85)
T cd05872 80 L 80 (85)
T ss_pred E
Confidence 3
No 230
>cd04983 IgV_TCR_alpha_like Immunoglobulin (Ig) variable (V) domain of T-cell receptor (TCR) alpha chain and similar proteins. IgV_TCR_alpha: immunoglobulin (Ig) variable domain of the alpha chain of alpha/beta T-cell antigen receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are composed of alpha and beta, or gamma and delta, polypeptide chains with variable (V) and constant (C) regions. This group represents the variable domain of the alpha chain of TCRs and also includes the variable domain of delta chains of TCRs. Alpha/beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. The variable domain of TCRs is responsible for antigen recognition, and is located at the N-terminus of the receptor. Gamma/delta TCRs recognize intact protein antigens; they recognize proteins antigens directly and without antigen processing, and MHC independently of the bound peptide.
Probab=98.80 E-value=3.5e-08 Score=70.37 Aligned_cols=77 Identities=21% Similarity=0.227 Sum_probs=54.5
Q ss_pred eccccccccCCCcEEEEEEeecCCCCeeEEeeCCE---Ec-----------CCCCeeEeceEEecccceeEEEEEccccc
Q psy15667 7 YSFIEQTLQPGPAVSLKCIASGNPTPDIGWTLDGF---EL-----------PTNNRFVIGQFVSGHGDVISHVNISHVTV 72 (286)
Q Consensus 7 ~~~~~~~~~~G~~~~l~C~~~g~p~p~v~W~~~~~---~l-----------~~~~~~~~~~~~~~~~~~~~~l~I~~~~~ 72 (286)
..+..+.+.+|++|+|.|.+.+.+...+.|++... +. ....|+.+.. ........|.|.+++.
T Consensus 3 q~~~~v~~~~G~~v~L~C~~~~~~~~~v~W~k~~~~~~~~~l~~~~~~~~~~~~~r~~~~~---~~~~~~~~L~I~~~~~ 79 (109)
T cd04983 3 QSPQSLSVQEGENVTLNCNYSTSTFYYLFWYRQYPGQGPQFLIYISSNGEEKEKGRFSATL---DKSRKSSSLHISAAQL 79 (109)
T ss_pred ecCCceEEcCCCCEEEEEEECCCCccEEEEEEECCCCCeEEEEEEecCCCcccCCcEEEEE---cccCCEEEEEECCCCH
Confidence 45567789999999999999988888999998531 10 1223443211 1112234699999999
Q ss_pred CCCeEEEEEEEcCC
Q psy15667 73 EDGGEYACVAENRA 86 (286)
Q Consensus 73 ~D~G~Y~C~a~n~~ 86 (286)
+|+|.|.|.+.+..
T Consensus 80 ~DsG~Y~C~~~~~~ 93 (109)
T cd04983 80 SDSAVYFCALSESG 93 (109)
T ss_pred HHCEEEEEEEecCC
Confidence 99999999988753
No 231
>cd05896 Ig1_IL1RAPL-1_like First immunoglobulin (Ig)-like domain of X-linked interleukin-1 receptor accessory protein-like 1 (IL1RAPL-1). Ig1_ IL1RAPL-1_like: domain similar to the first immunoglobulin (Ig)-like domain of X-linked interleukin-1 receptor accessory protein-like 1 (IL1RAPL-1). IL-1 alpha and IL-1 beta are cytokines which participates in the regulation of inflammation, immune responses, and hematopoiesis. These cytokines bind to the IL-1 receptor type 1 (IL1R1), which is activated on additional association with an accessory protein, IL1RAP. IL-1 also binds a second receptor designated type II (IL1R2). Mature IL1R1 consists of three Ig-like domains, a transmembrane domain, and a large cytoplasmic domain. Mature IL1R2 is organized similarly except that it has a short cytoplasmic domain. The latter does not initiate signal transduction. A naturally occurring cytokine IL-1RA (IL-1 receptor antagonist) is widely expressed and binds to IL-1 receptors, inhibiting the binding of
Probab=98.76 E-value=2.6e-08 Score=68.82 Aligned_cols=74 Identities=18% Similarity=0.281 Sum_probs=49.8
Q ss_pred ccccccCCCcEEEEEEee-----------cCCCCeeEEeeCCEEcCCCCeeEec-eEEecccceeEEEEEcccccCCCeE
Q psy15667 10 IEQTLQPGPAVSLKCIAS-----------GNPTPDIGWTLDGFELPTNNRFVIG-QFVSGHGDVISHVNISHVTVEDGGE 77 (286)
Q Consensus 10 ~~~~~~~G~~~~l~C~~~-----------g~p~p~v~W~~~~~~l~~~~~~~~~-~~~~~~~~~~~~l~I~~~~~~D~G~ 77 (286)
....+.+||.+.|.|-.. ..+...+.|+|++..+......... .++..+++ .|.|..+..+|+|.
T Consensus 8 ~~~~~~~GE~v~l~C~~~~~~~~~~~~~~~~~~~~v~WyK~~~~~~~~~~~~~~~~Ri~~~~~---~Lwf~Pa~~eDSG~ 84 (104)
T cd05896 8 KKYMVLAGEPVRIKCALFYGYIRTNYSMAQSAGLSLMWYKSSGDGEEPIEIIFDGVRMSKEED---SIWFRPAELQDSGL 84 (104)
T ss_pred eeEEEcCCCeEEEECCCccccccccccccccCCceEEEEECCCCCCCCCcccccceeEEEeCC---EEEEEeCChhhCeE
Confidence 345789999999999751 1223479999997665432211000 01122333 38899999999999
Q ss_pred EEEEEEcCC
Q psy15667 78 YACVAENRA 86 (286)
Q Consensus 78 Y~C~a~n~~ 86 (286)
|+|.+.|..
T Consensus 85 Y~C~~rN~t 93 (104)
T cd05896 85 YTCVLRNST 93 (104)
T ss_pred EEEEECCCC
Confidence 999999975
No 232
>cd05877 Ig_LP_like Immunoglobulin (Ig)-like domain of human cartilage link protein (LP). Ig_LP_like: immunoglobulin (Ig)-like domain similar to that that found in human cartilage link protein (LP). In cartilage, chondroitin-keratan sulfate proteoglycan (CSPG), aggrecan, forms cartilage link protein stabilized aggregates with hyaluronan (HA). These aggregates contribute to the tissue's load bearing properties. Aggregates having other CSPGs substituting for aggrecan may contribute to the structural integrity of many different tissues. Members of the vertebrate HPLN (hyaluronan/HA and proteoglycan binding link) protein family are physically linked adjacent to CSPG genes.
Probab=98.75 E-value=9.3e-08 Score=67.80 Aligned_cols=37 Identities=16% Similarity=0.326 Sum_probs=33.7
Q ss_pred eeeEEEcccCCCCCeEEEEEEEecccceeeEEEEEEC
Q psy15667 250 SSLLSINSVSAAHSGEYTCVASNTAAQARYSSKLQVK 286 (286)
Q Consensus 250 ~~~L~i~~v~~~d~G~Y~C~a~N~~g~~~~~~~L~V~ 286 (286)
...|.|.+++.+|+|.|.|.+.+..+.....+.|.|+
T Consensus 67 ~~sL~I~~v~~~DsG~Y~C~v~~~~~~~~~~~~l~v~ 103 (106)
T cd05877 67 DASLVITDLRLEDYGRYRCEVIDGLEDESVVVALRLR 103 (106)
T ss_pred cEEEEEccCChHHCEEEEEEEEecccceEEEEEEEEE
Confidence 4579999999999999999999999998899888874
No 233
>cd05899 IgV_TCR_beta Immunoglobulin (Ig) variable (V) domain of T-cell receptor (TCR) bet a chain. IgV_TCR_beta: immunoglobulin (Ig) variable domain of the beta chain of alpha/beta T-cell antigen receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are composed of alpha and beta, or gamma and delta, polypeptide chains with variable (V) and constant (C) regions. This group includes the variable domain of the alpha chain of alpha/beta TCRs. Alpha/beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. The variable domain of TCRs is responsible for antigen recognition, and is located at the N-terminus of the receptor. Gamma/delta TCRs recognize intact protein antigens; they recognize proteins antigens directly and without antigen processing, and MHC independently of the bound peptide.
Probab=98.75 E-value=5e-08 Score=69.71 Aligned_cols=75 Identities=21% Similarity=0.274 Sum_probs=53.0
Q ss_pred EeccccccccCCCcEEEEEEeecCCCCeeEEeeCCE--EcC----------------CCCeeEeceEEecccceeEEEEE
Q psy15667 6 TYSFIEQTLQPGPAVSLKCIASGNPTPDIGWTLDGF--ELP----------------TNNRFVIGQFVSGHGDVISHVNI 67 (286)
Q Consensus 6 ~~~~~~~~~~~G~~~~l~C~~~g~p~p~v~W~~~~~--~l~----------------~~~~~~~~~~~~~~~~~~~~l~I 67 (286)
...+....+.+|++++|.|.+.+ +.+.+.|+|... .+. ...|+... ........|.|
T Consensus 2 ~Q~p~~~~v~~G~~v~l~C~~~~-~~~~v~Wykq~~g~~~~~l~~~~~~~~~~~~~~~~~r~~~~----~~~~~~~~L~I 76 (110)
T cd05899 2 TQSPRYLIKGRGQSVTLRCSQTS-GHDNMYWYRQDPGKGLQLLFYSNGGSLNEEEGDPKDRFSAS----RPSLTRSSLTI 76 (110)
T ss_pred EECCCceEEcCCCcEEEEEEECC-CCCEEEEEEECCCCCcEEEEEEcCCCceEecCccCCceEEE----CcCCCccEEEE
Confidence 34566788999999999999987 778899998532 110 02333321 11112346999
Q ss_pred cccccCCCeEEEEEEEcC
Q psy15667 68 SHVTVEDGGEYACVAENR 85 (286)
Q Consensus 68 ~~~~~~D~G~Y~C~a~n~ 85 (286)
.+++.+|+|.|.|.+.+.
T Consensus 77 ~~~~~~Dsg~Y~Ca~~~~ 94 (110)
T cd05899 77 KSAEPEDSAVYLCASSLG 94 (110)
T ss_pred CCCChhhCEEEEEEeeCC
Confidence 999999999999998764
No 234
>cd05883 Ig2_Necl-2 Second immunoglobulin (Ig)-like domain of nectin-like molecule 2 (also known as cell adhesion molecule 1 (CADM1)). Ig2_Necl-2: second immunoglobulin (Ig)-like domain of nectin-like molecule 2 (also known as cell adhesion molecule 1 (CADM1)). Nectin-like molecules (Necls) have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). These have an extracellular region containing three Ig-like domains, one transmembrane region, and one cytoplasmic region. Necl-2 has Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-1 is expressed in a wide variety of tissues, and is a putative tumour suppressor gene, which is downregulated in aggressive neuroblastoma. Ig domains are likely to participate in ligand binding and recognition.
Probab=98.71 E-value=1.3e-07 Score=62.98 Aligned_cols=75 Identities=21% Similarity=0.359 Sum_probs=52.7
Q ss_pred EEEEEeeecCCCCCeEEEEeCCeeCCCCCCc-eeee-cCCCeeeEEEcccCCCCCeEEEEEEEecc-cceeeEEEEEE
Q psy15667 211 TRVICGVTHGDPPLTIRWLKDGKPLSPRFPV-NVSD-LDSFSSLLSINSVSAAHSGEYTCVASNTA-AQARYSSKLQV 285 (286)
Q Consensus 211 ~~l~c~~~~~~p~~~~~W~~~g~~~~~~~~~-~~~~-~~~~~~~L~i~~v~~~d~G~Y~C~a~N~~-g~~~~~~~L~V 285 (286)
+.|.|.+..+.|++.|+|+|+++++...... .... .....+.|.|..-...|...|+|.|.|.. ...+.+..|.|
T Consensus 2 ~~L~C~s~gSkP~A~I~W~k~~~~l~~~~~~~~~~~~~~t~~S~L~~~p~~eDdG~~~~C~a~~~~l~~~~~~~~L~V 79 (82)
T cd05883 2 IELNCTAMASKPAATIRWFKGNKELTGKSTVEETWSRMFTVTSQLMLKVTKEDDGVPVICLVDHPAVKDLQTQRYLEV 79 (82)
T ss_pred EEEEEEecCCCCCCEEEEEECCEECcCcccceeccCCCcEEEEEEEEECchhhCCCEEEEEEcCcccCCceeeEEEEE
Confidence 5789999999999999999999998654221 0110 11235578887777778899999999975 23455555555
No 235
>cd04980 IgV_L_kappa Immunoglobulin (Ig) light chain, kappa type, variable (V) domain. IgV_L_kappa: Immunoglobulin (Ig) light chain, kappa type, variable (V) domain. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. In Ig, each chain is composed of one variable domain (IgV) and one or more constant domains (IgC); these names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. There are five types of heavy chains (alpha, gamma, delta, epsilon, and mu), which determine the type of immunoglobulin: IgA, IgG, IgD, IgE, and IgM, respectively. In higher vertebrates, there are two types of light chain, designated kappa and lambda, which seem to be functionally identical, and can associate with any of the heavy chains.
Probab=98.66 E-value=1.5e-07 Score=66.74 Aligned_cols=75 Identities=27% Similarity=0.350 Sum_probs=52.0
Q ss_pred eEeccccccccCCCcEEEEEEeecCC-CCeeEEeeCC--EE---cC---------CCCeeEeceEEecccceeEEEEEcc
Q psy15667 5 LTYSFIEQTLQPGPAVSLKCIASGNP-TPDIGWTLDG--FE---LP---------TNNRFVIGQFVSGHGDVISHVNISH 69 (286)
Q Consensus 5 ~~~~~~~~~~~~G~~~~l~C~~~g~p-~p~v~W~~~~--~~---l~---------~~~~~~~~~~~~~~~~~~~~l~I~~ 69 (286)
+...+....+.+|++|+|.|.+.+.. ...+.|+|.. .. |. ...|+... .......|.|.+
T Consensus 3 v~Q~p~~~~v~~G~~v~L~C~~~~~~~~~~~~Wyrq~~g~~~~~l~~~~~~~~~~~~~r~~~~-----~~~~~~~L~I~~ 77 (106)
T cd04980 3 LTQSPATLSVSPGESATISCKASQSVSSNYLAWYQQKPGQAPKLLIYGASTLASGTPSRFSGS-----GSGTDFTLTISR 77 (106)
T ss_pred EEECCCcEEECCCCCEEEEEEECCCCCCCcEEEEEECCCCCcEEEEECccccCCCCCCCEEEe-----ccCCEEEEEECC
Confidence 45567778899999999999987665 5679999742 11 10 01233221 111234699999
Q ss_pred cccCCCeEEEEEEEc
Q psy15667 70 VTVEDGGEYACVAEN 84 (286)
Q Consensus 70 ~~~~D~G~Y~C~a~n 84 (286)
++.+|+|.|.|.+.+
T Consensus 78 ~~~~Dsg~Y~Ca~~~ 92 (106)
T cd04980 78 VEPEDAAVYYCQQYG 92 (106)
T ss_pred CChHHCEEEEEEEeC
Confidence 999999999998865
No 236
>cd05714 Ig_CSPGs_LP Immunoglobulin (Ig)-like domain of chondroitin sulfate proteoglycans (CSPGs), human cartilage link protein (LP) and similar proteins. Ig_CSPGs_LP: immunoglobulin (Ig)-like domain similar to that found in chondroitin sulfate proteoglycans (CSPGs) and human cartilage link protein (LP). Included in this group are the CSPGs aggrecan, versican, and neurocan. In CSPGs this Ig-like domain is followed by hyaluronan (HA)-binding tandem repeats, and a C-terminal region with epidermal growth factor-like, lectin-like, and complement regulatory protein-like domains. Separating these N- and C-terminal regions is a nonhomologous glycosaminoglycan attachment region. In cartilage, aggrecan forms cartilage link protein stabilized aggregates with hyaluronan (HA). These aggregates contribute to the tissue's load bearing properties. Aggrecan and versican have a wide distribution in connective tissue and extracellular matrices. Neurocan is localized almost exclusively in nervous tissue.
Probab=98.66 E-value=4.3e-07 Score=64.36 Aligned_cols=38 Identities=21% Similarity=0.363 Sum_probs=33.6
Q ss_pred CeeeEEEcccCCCCCeEEEEEEEecccceeeEEEEEEC
Q psy15667 249 FSSLLSINSVSAAHSGEYTCVASNTAAQARYSSKLQVK 286 (286)
Q Consensus 249 ~~~~L~i~~v~~~d~G~Y~C~a~N~~g~~~~~~~L~V~ 286 (286)
....|.|.+++.+|+|.|.|.+.|..+.....+.|.|+
T Consensus 66 ~~~sL~I~~v~~sD~G~Y~C~v~~~~~~~~~~v~L~V~ 103 (106)
T cd05714 66 GDASLVITDLRLEDSGRYRCEVIDGIEDEQDTVELEVR 103 (106)
T ss_pred CcceEEECCCCHHHCEEEEEEEEcCCCceEEEEEEEEE
Confidence 45689999999999999999999988888888888874
No 237
>cd00099 IgV Immunoglobulin variable domain (IgV). IgV: Immunoglobulin variable domain (IgV). Members of the IgV family are components of immunoglobulin (Ig) and T cell receptors. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. In Ig, each chain is composed of one variable domain (IgV) and one or more constant domains (IgC); these names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. Within the variable domain, there are regions of even more variability called the hypervariable or complementarity-determining regions (CDRs) which are responsible for antigen binding. A predominant feature of most Ig domains is the disulfide bridge connecting 2 beta-sheets with a tryptophan residue packed against the disulfide bond.
Probab=98.62 E-value=1.9e-07 Score=65.96 Aligned_cols=72 Identities=25% Similarity=0.362 Sum_probs=49.8
Q ss_pred cccCCCcEEEEEEeecC-CCCeeEEeeCCE-----Ec------------CCCCeeEeceEEecccceeEEEEEcccccCC
Q psy15667 13 TLQPGPAVSLKCIASGN-PTPDIGWTLDGF-----EL------------PTNNRFVIGQFVSGHGDVISHVNISHVTVED 74 (286)
Q Consensus 13 ~~~~G~~~~l~C~~~g~-p~p~v~W~~~~~-----~l------------~~~~~~~~~~~~~~~~~~~~~l~I~~~~~~D 74 (286)
++.+|++++|.|...+. +...+.|++... .+ ....|+.... .......+|.|.+++.+|
T Consensus 2 ~v~~G~~v~L~C~~~~~~~~~~v~W~k~~~~~~~~~i~~~~~~~~~~~~~~~~r~~~~~---~~~~~~~sL~I~~v~~~D 78 (105)
T cd00099 2 SVSEGESVTLSCTYSGSFSSYYIFWYRQKPGKGPELLIYISSNGSQYAGGVKGRFSGTR---DSSKSSFTLTISSLQPED 78 (105)
T ss_pred eecCCCCEEEEEEEeCCcCcceEEEEEECCCCCCEEEEEEeCCCCccCccCCCcEEEEE---eccCCEEEEEECCCCHHH
Confidence 57899999999999876 677899998432 11 0112332211 111123469999999999
Q ss_pred CeEEEEEEEcCCE
Q psy15667 75 GGEYACVAENRAG 87 (286)
Q Consensus 75 ~G~Y~C~a~n~~g 87 (286)
+|.|.|.+.+..+
T Consensus 79 ~G~Y~C~v~~~~~ 91 (105)
T cd00099 79 SAVYYCAVSLSGG 91 (105)
T ss_pred CEEEEEEEecCCC
Confidence 9999999988654
No 238
>cd05751 Ig1_LILRB1_like First immunoglobulin (Ig)-like domain found in Leukocyte Ig-like receptors (LILR)B1 (also known as LIR-1) and similar proteins. Ig1_LILRB1_like: domain similar to the first immunoglobulin (Ig)-like domain found in Leukocyte Ig-like receptors (LILR)B1 (also known as LIR-1). This group includes, LILRA5 (LIR9), an activating natural cytotoxicity receptor NKp46, and the immune-type receptor glycoprotein VI (GPVI). LILRs are a family of immunoreceptors expressed on expressed on T and B cells, on monocytes, dendritic cells, and subgroups of natural killer (NK) cells. The human LILR family contains nine proteins (LILRA1-3,and 5, and LILRB1-5). From functional assays, and as the cytoplasmic domains of various LILRs, for example LILRB1 (LIR-1), LILRB2 (LIR-2), and LILRB3 (LIR-3) contain immunoreceptor tyrosine-based inhibitory motifs (ITIMs) it is thought that LIR proteins are inhibitory receptors. Of the eight LIR family proteins, only LIR-1(LILRB1), and LIR-2 (LILRB2),
Probab=98.61 E-value=2.2e-07 Score=63.90 Aligned_cols=65 Identities=17% Similarity=0.285 Sum_probs=48.8
Q ss_pred CCCCCCCeEEEEEeeecCCCCCeEEEEeCCeeCCCCCCceeeecCCCeeeEEEcccCCCCCeEEEEEEEec
Q psy15667 203 DGLPEGARTRVICGVTHGDPPLTIRWLKDGKPLSPRFPVNVSDLDSFSSLLSINSVSAAHSGEYTCVASNT 273 (286)
Q Consensus 203 ~~~~~g~~~~l~c~~~~~~p~~~~~W~~~g~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~N~ 273 (286)
..+.+|+.+.|.|.. ..+...+.|+|+|....... .........+.|.+|+.+|+|.|+|.+.|.
T Consensus 11 ~vV~~G~~VtL~C~~--~~~~~~f~l~k~g~~~~~~~----~~~~~~~~~f~i~~v~~~~~G~Y~C~~~~~ 75 (91)
T cd05751 11 SVVPLGKPVTLRCQG--PYGAVEYRLYREGSTFAVKK----PPEPQNKAKFFIPSMKREHAGRYRCYYRSG 75 (91)
T ss_pred CccCCCCcEEEEEec--CCCCCEEEEEECCCCccccc----cCCCceeEEEEccCCChhHCEEEEEEEECC
Confidence 447789999999975 35677899999998543210 111233567999999999999999999987
No 239
>cd05900 Ig_Aggrecan Immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), aggrecan. Ig_Aggrecan: immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), aggrecan. These aggregates contribute to the tissue's load bearing properties. In CSPGs, the Ig-like domain is followed by hyaluronan (HA)-binding tandem repeats, and a C-terminal region with epidermal growth factor-like, lectin-like, and complement regulatory protein-like domains. Separating these N- and C-terminal regions is a nonhomologous glycosaminoglycan attachment region. In cartilage, aggrecan forms cartilage link protein stabilized aggregates with HA. These aggregates contribute to the tissue's load bearing properties. Aggrecan has a wide distribution in connective tissue and extracellular matrices. Members of the vertebrate HPLN (hyaluronan/HA and proteoglycan binding link) protein family are physically linked adjacent to CSPG genes.
Probab=98.60 E-value=9.3e-07 Score=62.95 Aligned_cols=38 Identities=24% Similarity=0.369 Sum_probs=33.9
Q ss_pred CeeeEEEcccCCCCCeEEEEEEEecccceeeEEEEEEC
Q psy15667 249 FSSLLSINSVSAAHSGEYTCVASNTAAQARYSSKLQVK 286 (286)
Q Consensus 249 ~~~~L~i~~v~~~d~G~Y~C~a~N~~g~~~~~~~L~V~ 286 (286)
....|.|.+++.+|+|.|.|...+.+...+..+.|.|+
T Consensus 72 ~~asL~I~nl~~sDsG~Y~C~V~~g~~~~~~~v~l~v~ 109 (112)
T cd05900 72 SDATLEITELRSNDSGTYRCEVMHGIEDNYDTVEVQVK 109 (112)
T ss_pred CCcEEEEeecccccCEEEEEEEecCCCCceeEEEEEEE
Confidence 45789999999999999999999988888888888875
No 240
>cd04983 IgV_TCR_alpha_like Immunoglobulin (Ig) variable (V) domain of T-cell receptor (TCR) alpha chain and similar proteins. IgV_TCR_alpha: immunoglobulin (Ig) variable domain of the alpha chain of alpha/beta T-cell antigen receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are composed of alpha and beta, or gamma and delta, polypeptide chains with variable (V) and constant (C) regions. This group represents the variable domain of the alpha chain of TCRs and also includes the variable domain of delta chains of TCRs. Alpha/beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. The variable domain of TCRs is responsible for antigen recognition, and is located at the N-terminus of the receptor. Gamma/delta TCRs recognize intact protein antigens; they recognize proteins antigens directly and without antigen processing, and MHC independently of the bound peptide.
Probab=98.59 E-value=1.5e-06 Score=61.90 Aligned_cols=86 Identities=16% Similarity=0.303 Sum_probs=51.9
Q ss_pred ceEEecCCCEEEEeeEeeecCCeEEEEEcCCcccccccccCCCCCCCeEEEEEeeecCCCCCeEEEEeCCeeCCCCCCce
Q psy15667 163 KVTAIDGEGLSIKCPVAGYPIEEVHWEKVPPKIESFAFPFDGLPEGARTRVICGVTHGDPPLTIRWLKDGKPLSPRFPVN 242 (286)
Q Consensus 163 ~~~~~~g~~~~l~c~~~~~p~~~v~w~~~~~~~~~~~~~~~~~~~g~~~~l~c~~~~~~p~~~~~W~~~g~~~~~~~~~~ 242 (286)
...+.+|++++|.|.+.+.+...+.|.+..+. ....+..... .++.. ....++.
T Consensus 7 ~v~~~~G~~v~L~C~~~~~~~~~v~W~k~~~~--------------~~~~~l~~~~-----------~~~~~-~~~~r~~ 60 (109)
T cd04983 7 SLSVQEGENVTLNCNYSTSTFYYLFWYRQYPG--------------QGPQFLIYIS-----------SNGEE-KEKGRFS 60 (109)
T ss_pred ceEEcCCCCEEEEEEECCCCccEEEEEEECCC--------------CCeEEEEEEe-----------cCCCc-ccCCcEE
Confidence 45667899999999988877788889874321 0001111000 00000 1122333
Q ss_pred eeec-CCCeeeEEEcccCCCCCeEEEEEEEecc
Q psy15667 243 VSDL-DSFSSLLSINSVSAAHSGEYTCVASNTA 274 (286)
Q Consensus 243 ~~~~-~~~~~~L~i~~v~~~d~G~Y~C~a~N~~ 274 (286)
+... ......|.|.+++.+|+|.|.|.+.+..
T Consensus 61 ~~~~~~~~~~~L~I~~~~~~DsG~Y~C~~~~~~ 93 (109)
T cd04983 61 ATLDKSRKSSSLHISAAQLSDSAVYFCALSESG 93 (109)
T ss_pred EEEcccCCEEEEEECCCCHHHCEEEEEEEecCC
Confidence 3221 1235689999999999999999999764
No 241
>cd05718 Ig1_PVR_like First immunoglobulin (Ig) domain of poliovirus receptor (PVR, also known as CD155) and similar proteins. Ig1_PVR_like: domain similar to the first immunoglobulin (Ig) domain of poliovirus receptor (PVR, also known as CD155). Poliovirus (PV) binds to its cellular receptor (PVR/CD155) to initiate infection. CD155 is a membrane-anchored, single-span glycoprotein; its extracellular region has three Ig-like domains. There are four different isotypes of CD155 (referred to as alpha, beta, gamma, and delta), that result from alternate splicing of the CD155 mRNA, and have identical extracellular domains. CD155-beta and - gamma, are secreted, CD155-alpha and delta are membrane-bound and function as PV receptors. The virus recognition site is contained in the amino-terminal domain, D1. Having the virus attachment site on the receptor distal from the plasma membrane, may be important for successful initiation of infection of cells by the virus. CD155 binds in the poliovirus "c
Probab=98.59 E-value=5.8e-07 Score=62.65 Aligned_cols=36 Identities=19% Similarity=0.405 Sum_probs=31.6
Q ss_pred eeeEEEcccCCCCCeEEEEEEEe-cccceeeEEEEEE
Q psy15667 250 SSLLSINSVSAAHSGEYTCVASN-TAAQARYSSKLQV 285 (286)
Q Consensus 250 ~~~L~i~~v~~~d~G~Y~C~a~N-~~g~~~~~~~L~V 285 (286)
...|.|.+++.+|+|.|.|.+.+ ..|.......|.|
T Consensus 61 ~~sL~I~~v~~~D~G~Y~C~v~~~~~g~~~~~~~l~V 97 (98)
T cd05718 61 DATISISNLRLEDEGNYICEFATFPQGNRQKVTTLTV 97 (98)
T ss_pred ceEEEEccCCcccCEEEEEEEEeCCCCcEEEEEEEEe
Confidence 56899999999999999999876 6788888888877
No 242
>cd05879 Ig_P0 Immunoglobulin (Ig)-like domain of Protein zero (P0). Ig_P0ex: immunoglobulin (Ig) domain of Protein zero (P0). P0 accounts for over 50% of the total protein in peripheral nervous system (PNS) myelin. P0 is a single-pass transmembrane glycoprotein with a highly basic intracellular domain and an Ig domain. The extracellular domain of P0 (P0-ED) is similar to the Ig variable domain, carrying one acceptor sequence for N-linked glycosylation. P0 plays a role in membrane adhesion in the spiral wraps of the myelin sheath. The intracellular domain is thought to mediate membrane apposition of the cytoplasmic faces and may, through electrostatic interactions, interact directly with lipid headgroups. It is thought that homophilic interactions of the P0 extracellular domain mediate membrane juxtaposition in the extracellular space of PNS myelin.
Probab=98.58 E-value=4.6e-07 Score=65.00 Aligned_cols=77 Identities=19% Similarity=0.273 Sum_probs=50.1
Q ss_pred eccccccccCCCcEEEEEEeecC----CCCeeEEee---------------CCEEcC-CCC----eeEeceEEeccccee
Q psy15667 7 YSFIEQTLQPGPAVSLKCIASGN----PTPDIGWTL---------------DGFELP-TNN----RFVIGQFVSGHGDVI 62 (286)
Q Consensus 7 ~~~~~~~~~~G~~~~l~C~~~g~----p~p~v~W~~---------------~~~~l~-~~~----~~~~~~~~~~~~~~~ 62 (286)
+.+.+..+..|++++|.|..... +..+|.|.+ +|.... ... |....... ..++
T Consensus 3 ~~~~ev~a~~G~~v~L~C~f~~~~~~~~~~~v~W~~~~~~~~~~~~v~~y~~g~~~~~~~~~f~~Rv~f~g~~-~~~d-- 79 (116)
T cd05879 3 YTDREVYGTVGSDVTLSCSFWSSEWISDDISFTWHYQPDGSRDAISIFHYGKGQPYIDDVGPFKERIEWVGNP-SRKD-- 79 (116)
T ss_pred EccceEEEEcCCcEEEEEEEecCCCCCCcEEEEEEEcCCCCCccEEEEEeCCCceecccccCccCceEEeCCC-CcCe--
Confidence 45677788999999999987763 346899943 233221 111 22100000 0122
Q ss_pred EEEEEcccccCCCeEEEEEEEcCC
Q psy15667 63 SHVNISHVTVEDGGEYACVAENRA 86 (286)
Q Consensus 63 ~~l~I~~~~~~D~G~Y~C~a~n~~ 86 (286)
.+|.|.+++.+|+|.|+|.+.|..
T Consensus 80 aSI~I~nv~~sD~G~Y~C~v~n~p 103 (116)
T cd05879 80 GSIVIHNLDYTDNGTFTCDVKNPP 103 (116)
T ss_pred eEEEEccCCcccCEEEEEEEEcCC
Confidence 368999999999999999999854
No 243
>cd04982 IgV_TCR_gamma Immunoglobulin (Ig) variable (V) domain of T-cell receptor (TCR) gamma chain. IgV_TCR_gamma: immunoglobulin (Ig) variable (V) domain of the gamma chain of gamma/delta T-cell receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are heterodimers consisting of alpha and beta chains or gamma and delta chains. Each chain contains a variable (V) and a constant (C) region. The majority of T cells contain alpha/beta TCRs but a small subset contain gamma/delta TCRs. Alpha/beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. Gamma/delta TCRs recognize intact protein antigens; they recognize protein antigens directly and without antigen processing, and MHC independently of the bound peptide. Gamma/delta T cells can also be stimulated by non-peptide antigens such as small phosphate- or amine-containing compounds. The variable domain of gamma/delta TCRs is responsible for antigen recognition and is
Probab=98.57 E-value=2.9e-07 Score=66.43 Aligned_cols=75 Identities=27% Similarity=0.395 Sum_probs=51.7
Q ss_pred eccccccccCCCcEEEEEEeec--CCCCeeEEeeC--CEEc------C-----------CCCeeEeceEEecccceeEEE
Q psy15667 7 YSFIEQTLQPGPAVSLKCIASG--NPTPDIGWTLD--GFEL------P-----------TNNRFVIGQFVSGHGDVISHV 65 (286)
Q Consensus 7 ~~~~~~~~~~G~~~~l~C~~~g--~p~p~v~W~~~--~~~l------~-----------~~~~~~~~~~~~~~~~~~~~l 65 (286)
..+..+.+.+|++++|.|.+.+ .+.+.+.|++. +..+ . ...|+.+... .......|
T Consensus 3 Q~p~~~~~~~G~~v~l~C~~~~~~~~~~~v~Wyrq~~g~~~~~l~~~~~~~~~~~~~~~~~~r~~~~~~---~~~~~~~L 79 (116)
T cd04982 3 QPQLSITREESKSVTISCKVSGIDFSTTYIHWYRQKPGQALERLLYVSSTSTQRKLSGGTKNKFEARKD---VGKSTSTL 79 (116)
T ss_pred CcCCeEEeCCCCCEEEEEEEeCCCccccEEEEEEECCCCCCEEEEEEecCCCcEEeCcccCCCEEEEEE---CCCCEEEE
Confidence 3456678899999999999887 67788999985 2111 0 1234432111 11134569
Q ss_pred EEcccccCCCeEEEEEEEc
Q psy15667 66 NISHVTVEDGGEYACVAEN 84 (286)
Q Consensus 66 ~I~~~~~~D~G~Y~C~a~n 84 (286)
+|.+++.+|+|.|.|.+..
T Consensus 80 ~I~~~~~~Dsg~Y~C~~~~ 98 (116)
T cd04982 80 TIQNLEKEDSATYYCAYWE 98 (116)
T ss_pred EEEECCHHHCEEEEEEEec
Confidence 9999999999999998754
No 244
>cd00098 IgC Immunoglobulin Constant domain. IgC: Immunoglobulin constant domain (IgC). Members of the IgC family are components of immunoglobulin, T-cell receptors, CD1 cell surface glycoproteins, secretory glycoproteins A/C, and Major Histocompatibility Complex (MHC) class I/II molecules. In immunoglobulins, each chain is composed of one variable domain (IgV) and one or more IgC domains. These names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. The IgV domain is responsible for antigen binding, and the IgC domain is involved in oligomerization and molecular interactions.
Probab=98.57 E-value=2.7e-07 Score=63.96 Aligned_cols=71 Identities=27% Similarity=0.459 Sum_probs=49.6
Q ss_pred cCCCcEEEEEEeecC-CC-CeeEEeeCCEEcCCCCe-eEeceEEecccc--eeEEEEEcccccCCCeEEEEEEEcCCE
Q psy15667 15 QPGPAVSLKCIASGN-PT-PDIGWTLDGFELPTNNR-FVIGQFVSGHGD--VISHVNISHVTVEDGGEYACVAENRAG 87 (286)
Q Consensus 15 ~~G~~~~l~C~~~g~-p~-p~v~W~~~~~~l~~~~~-~~~~~~~~~~~~--~~~~l~I~~~~~~D~G~Y~C~a~n~~g 87 (286)
..|+.++|.|.+.|. |. .+++|++||..+..... .... ....+. ..+.|.|......|.|.|+|++.+...
T Consensus 11 ~~~~~~~L~C~a~g~~P~~~~i~W~~~g~~~~~~~~~~~~~--~~~~gt~~~~s~l~v~~~~~~~~~~y~C~v~h~~~ 86 (95)
T cd00098 11 LLGGSVTLTCLATGFYPPDITVTWLKNGKELTSGVTTTPPV--PNSDGTYSVSSQLTVSPSDWNSGDTYTCVVTHESL 86 (95)
T ss_pred HcCCCeEEEEEEeeEECCCcEEEEEECCEECCCceeccccc--cCCCCCEEEEEEEEECHHHhCCCCCEEEEEEeCCC
Confidence 579999999999997 64 68999999999865433 1110 111121 123467777777799999999988643
No 245
>cd05715 Ig_P0-like Immunoglobulin (Ig)-like domain of Protein zero (P0) and similar proteins. Ig_P0ex-like: domain similar to the immunoglobulin (Ig) domain of Protein zero (P0). P0 accounts for over 50% of the total protein in peripheral nervous system (PNS) myelin. P0 is a single-pass transmembrane glycoprotein with a highly basic intracellular domain and an extracellular Ig domain. The extracellular domain of P0 (P0-ED) is similar to the Ig variable domain, carrying one acceptor sequence for N-linked glycosylation. P0 plays a role in membrane adhesion in the spiral wraps of the myelin sheath. The intracellular domain is thought to mediate membrane apposition of the cytoplasmic faces and may, through electrostatic interactions, interact directly with lipid headgroups. It is thought that homophilic interactions of the P0 extracellular domain mediate membrane juxtaposition in the extracellular space of PNS myelin. This group also contains the Ig domain of Sodium channel subunit beta-2
Probab=98.54 E-value=2.6e-06 Score=61.39 Aligned_cols=36 Identities=22% Similarity=0.384 Sum_probs=27.3
Q ss_pred eeeEEEcccCCCCCeEEEEEEEecccc--eeeEEEEEE
Q psy15667 250 SSLLSINSVSAAHSGEYTCVASNTAAQ--ARYSSKLQV 285 (286)
Q Consensus 250 ~~~L~i~~v~~~d~G~Y~C~a~N~~g~--~~~~~~L~V 285 (286)
...|.|.+++.+|+|.|.|.+.|.-+. ......|.|
T Consensus 79 ~~sL~I~~v~~~D~G~Y~C~v~~~~~~~~~~~~~~~~~ 116 (116)
T cd05715 79 DASIVIHNLQFTDNGTYTCDVKNPPDIVGKPGEIRLRV 116 (116)
T ss_pred eeEEEEeeCCcccCEEEEEEEEeCCCCCCCccEEEEeC
Confidence 457999999999999999999987653 223455543
No 246
>cd05774 Ig_CEACAM_D1 First immunoglobulin (Ig)-like domain of carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM). IG_CEACAM_D1: immunoglobulin (Ig)-like domain 1 in carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM) protein subfamily. The CEA family is a group of anchored or secreted glycoproteins, expressed by epithelial cells, leukocytes, endothelial cells and placenta. The CEA family is divided into the CEACAM and pregnancy-specific glycoprotein (PSG) subfamilies. This group represents the CEACAM subfamily. CEACAM1 has many important cellular functions, it is a cell adhesion molecule, and a signaling molecule that regulates the growth of tumor cells, it is an angiogenic factor, and is a receptor for bacterial and viral pathogens, including mouse hepatitis virus (MHV). In mice, four isoforms of CEACAM1 generated by alternative splicing have either two [D1, D4] or four [D1-D4] Ig-like domains on the cell surface. This family corresponds to the D
Probab=98.54 E-value=1.1e-06 Score=61.88 Aligned_cols=36 Identities=28% Similarity=0.309 Sum_probs=30.0
Q ss_pred eeeEEEcccCCCCCeEEEEEEEecc-cceeeEEEEEE
Q psy15667 250 SSLLSINSVSAAHSGEYTCVASNTA-AQARYSSKLQV 285 (286)
Q Consensus 250 ~~~L~i~~v~~~d~G~Y~C~a~N~~-g~~~~~~~L~V 285 (286)
+++|.|.+++.+|+|.|+|.+.|.. .....+..|.|
T Consensus 69 ngSL~I~~v~~~D~G~Y~~~v~~~~~~~~~~~v~l~V 105 (105)
T cd05774 69 NGSLLIQNVTQKDTGFYTLQTITTNFQVEQATVHLQV 105 (105)
T ss_pred CCcEEEecCCcccCEEEEEEEEeCCccEEEEEEEEEC
Confidence 5689999999999999999999987 56666666654
No 247
>cd05879 Ig_P0 Immunoglobulin (Ig)-like domain of Protein zero (P0). Ig_P0ex: immunoglobulin (Ig) domain of Protein zero (P0). P0 accounts for over 50% of the total protein in peripheral nervous system (PNS) myelin. P0 is a single-pass transmembrane glycoprotein with a highly basic intracellular domain and an Ig domain. The extracellular domain of P0 (P0-ED) is similar to the Ig variable domain, carrying one acceptor sequence for N-linked glycosylation. P0 plays a role in membrane adhesion in the spiral wraps of the myelin sheath. The intracellular domain is thought to mediate membrane apposition of the cytoplasmic faces and may, through electrostatic interactions, interact directly with lipid headgroups. It is thought that homophilic interactions of the P0 extracellular domain mediate membrane juxtaposition in the extracellular space of PNS myelin.
Probab=98.52 E-value=4.4e-06 Score=59.94 Aligned_cols=99 Identities=15% Similarity=0.247 Sum_probs=56.1
Q ss_pred CceEEecCCCEEEEeeEeeec----CCeEEEEEcCCcccccccccCCCCCCCeEEEEEeeecCCCCCeEEEEeCCeeCC-
Q psy15667 162 PKVTAIDGEGLSIKCPVAGYP----IEEVHWEKVPPKIESFAFPFDGLPEGARTRVICGVTHGDPPLTIRWLKDGKPLS- 236 (286)
Q Consensus 162 ~~~~~~~g~~~~l~c~~~~~p----~~~v~w~~~~~~~~~~~~~~~~~~~g~~~~l~c~~~~~~p~~~~~W~~~g~~~~- 236 (286)
+.+.+..|+.+.|.|...... ...|.|...+.... ....+.=+++|....
T Consensus 6 ~ev~a~~G~~v~L~C~f~~~~~~~~~~~v~W~~~~~~~~-------------------------~~~~v~~y~~g~~~~~ 60 (116)
T cd05879 6 REVYGTVGSDVTLSCSFWSSEWISDDISFTWHYQPDGSR-------------------------DAISIFHYGKGQPYID 60 (116)
T ss_pred ceEEEEcCCcEEEEEEEecCCCCCCcEEEEEEEcCCCCC-------------------------ccEEEEEeCCCceecc
Confidence 346677899999999997643 35788965331100 000111122222211
Q ss_pred C----CCCceeeec-CCCeeeEEEcccCCCCCeEEEEEEEecccce--eeEEEEEE
Q psy15667 237 P----RFPVNVSDL-DSFSSLLSINSVSAAHSGEYTCVASNTAAQA--RYSSKLQV 285 (286)
Q Consensus 237 ~----~~~~~~~~~-~~~~~~L~i~~v~~~d~G~Y~C~a~N~~g~~--~~~~~L~V 285 (286)
. ..++.+.-. ......|.|.+++.+|.|.|+|...|.-+.. ..++.|.|
T Consensus 61 ~~~~f~~Rv~f~g~~~~~daSI~I~nv~~sD~G~Y~C~v~n~p~~~~~~~~~~l~v 116 (116)
T cd05879 61 DVGPFKERIEWVGNPSRKDGSIVIHNLDYTDNGTFTCDVKNPPDIVGKSSQVTLYV 116 (116)
T ss_pred cccCccCceEEeCCCCcCeeEEEEccCCcccCEEEEEEEEcCCCcCCceeEEEEEC
Confidence 0 012222111 1234679999999999999999999986533 34444543
No 248
>cd05880 Ig_EVA1 Immunoglobulin (Ig)-like domain of epithelial V-like antigen 1 (EVA). Ig_EVA: immunoglobulin (Ig) domain of epithelial V-like antigen 1 (EVA). EVA is also known as myelin protein zero-like 2. EVA is an adhesion molecule, which may play a role in structural organization of the thymus and early lymphocyte development.
Probab=98.51 E-value=2.4e-06 Score=61.44 Aligned_cols=27 Identities=22% Similarity=0.426 Sum_probs=24.1
Q ss_pred eeeEEEcccCCCCCeEEEEEEEecccc
Q psy15667 250 SSLLSINSVSAAHSGEYTCVASNTAAQ 276 (286)
Q Consensus 250 ~~~L~i~~v~~~d~G~Y~C~a~N~~g~ 276 (286)
...|.|.+++.+|+|.|.|.+.|..+.
T Consensus 78 ~~sL~I~~v~~~D~G~Y~C~v~~~~~~ 104 (115)
T cd05880 78 DASILIWQLQPTDNGTYTCQVKNPPDV 104 (115)
T ss_pred ceEEEEeeCChhhCEEEEEEEEeCCCC
Confidence 557999999999999999999997664
No 249
>cd05887 Ig1_Nectin-3_like First immunoglobulin (Ig) domain of nectin-3 (also known as poliovirus receptor related protein 3) and similar proteins. Ig1_Nectin-3_like: domain similar to the first immunoglobulin (Ig) domain of nectin-3 (also known as poliovirus receptor related protein 3). Nectin-3 belongs to the nectin family comprised of four transmembrane glycoproteins (nectins-1 through -4). Nectins are synaptic cell adhesion molecules (CAMs) which participate in adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. For example, during spermatid development, the nectin-3,-2 trans-interaction is required for the formation of Sertoli cell-spermatid junctions in testis, and during morphogenesis of the ciliary body, the nectin-3,-1 trans-interaction is important for apex-apex adhesion between the pigment and non-pigment layers of the ciliary epithelia. Nectins also
Probab=98.51 E-value=1.4e-06 Score=60.07 Aligned_cols=36 Identities=19% Similarity=0.375 Sum_probs=32.2
Q ss_pred eeeEEEcccCCCCCeEEEEEEEe-cccceeeEEEEEE
Q psy15667 250 SSLLSINSVSAAHSGEYTCVASN-TAAQARYSSKLQV 285 (286)
Q Consensus 250 ~~~L~i~~v~~~d~G~Y~C~a~N-~~g~~~~~~~L~V 285 (286)
..+|.|.+++.+|+|.|+|...+ +.|..+.++.|+|
T Consensus 59 d~sl~i~nv~~~D~G~Y~C~v~tfP~G~~~~~~~l~~ 95 (96)
T cd05887 59 DATIMLENVGFSDIGVYICKAVTFPLGNTQSSTTVTV 95 (96)
T ss_pred ccEEEEeCCCccccEEEEEEEEeCCCCCeeEEEEEEE
Confidence 56899999999999999999655 6899999999987
No 250
>cd05711 Ig_FcalphaRI Immunoglobulin (IG)-like domain of of FcalphaRI. IG_FcalphaRI : immunoglobulin (IG)-like domain of of FcalphaRI. FcalphaRI (CD89) is an IgA-specific receptor that is expressed on monocytes, eosinophils, neutrophils and macrophages. FcalphaRI mediates IgA-induced immune effector responses such as phagocytosis, antibody-dependent cell-mediated cytotoxicity and respiratory burst. Both monomeric and dimeric IgA can bind to FcalphaRI, and monomeric or dimeric IgA immune complexes can activate phagocytosis and other immune responses through the clustering of FcalphaRI. The Fc RI ectodomain is comprised of two Ig-like domains oriented at about 90 degree to each another.
Probab=98.48 E-value=9.4e-07 Score=61.08 Aligned_cols=75 Identities=20% Similarity=0.340 Sum_probs=50.8
Q ss_pred CeeEeccccccccCCCcEEEEEEeecCCCCeeEEeeCCEEcCCCCeeEeceEEecccceeEEEEEcccccCCCeEEEEEE
Q psy15667 3 PILTYSFIEQTLQPGPAVSLKCIASGNPTPDIGWTLDGFELPTNNRFVIGQFVSGHGDVISHVNISHVTVEDGGEYACVA 82 (286)
Q Consensus 3 p~~~~~~~~~~~~~G~~~~l~C~~~g~p~p~v~W~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~I~~~~~~D~G~Y~C~a 82 (286)
|.+. ..+..+|.+|++|+|.|.... +.-.+.|+|+|..... .+.... ..+.....|.|..++.+|+|.|.|..
T Consensus 2 P~l~-a~p~~vV~~G~~VTL~C~~~~-~~~~f~l~k~g~~~~~--~~~~~~---~~~~~~a~f~I~~~~~~~~G~Y~C~~ 74 (94)
T cd05711 2 PFLS-AHPSPVVPSGENVTLQCHSDI-RFDRFILYKEGRSKPV--LHLYEK---HHGGFQASFPLGPVTPAHAGTYRCYG 74 (94)
T ss_pred CEEE-ecCCCccCCCCeEEEEEecCC-CCCEEEEEECCCCCCc--eecccc---cCCeEEEEEEecCCCcccCEEEEEEE
Confidence 4444 455778999999999997765 4567999999865321 110000 01122335889999999999999987
Q ss_pred Ec
Q psy15667 83 EN 84 (286)
Q Consensus 83 ~n 84 (286)
..
T Consensus 75 ~~ 76 (94)
T cd05711 75 SY 76 (94)
T ss_pred EC
Confidence 53
No 251
>cd05888 Ig1_Nectin-4_like Frst immunoglobulin (Ig) domain of nectin-4 (also known as poliovirus receptor related protein 4, or as LNIR receptor) and similar proteins. Ig1_Nectin-4_like: domain similar to the first immunoglobulin (Ig) domain of nectin-4 (also known as poliovirus receptor related protein 4, or as LNIR receptor). Nectin-4 belongs to the nectin family, which is comprised of four transmembrane glycoproteins (nectins-1 through -4). Nectins are synaptic cell adhesion molecules (CAMs) which participate in adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. For example nectin-4 trans-interacts with nectin-1. Nectin-4 has also been shown to interact with the actin filament-binding protein, afadin. Unlike the other nectins, which are widely expressed in adult tissues, nectin-4 is mainly expressed during embryogenesis, and is not detected in normal adult
Probab=98.48 E-value=3.5e-06 Score=58.95 Aligned_cols=37 Identities=22% Similarity=0.287 Sum_probs=32.6
Q ss_pred eeeEEEcccCCCCCeEEEEEEEe-cccceeeEEEEEEC
Q psy15667 250 SSLLSINSVSAAHSGEYTCVASN-TAAQARYSSKLQVK 286 (286)
Q Consensus 250 ~~~L~i~~v~~~d~G~Y~C~a~N-~~g~~~~~~~L~V~ 286 (286)
...|.|.+++.+|+|.|.|...| ..|..+..+.|.|.
T Consensus 63 ~~sL~I~nv~~sD~GtY~C~v~~~p~g~~~~~~~L~V~ 100 (100)
T cd05888 63 DGALILRNAVQADEGKYKCRVITFPAGNFEAELVLTVW 100 (100)
T ss_pred ceEEEEecCccccceEEEEEEEeCCCCCeeeEEEEEeC
Confidence 55799999999999999999999 67888888888873
No 252
>cd05755 Ig2_ICAM-1_like Second immunoglobulin (Ig)-like domain of intercellular cell adhesion molecule-1 (ICAM-1, CD54) and similar proteins. Ig2_ ICAM-1_like: domain similar to the second immunoglobulin (Ig)-like domain of intercellular cell adhesion molecule-1 (ICAM-1, CD54). During the inflammation process, these molecules recruit leukocytes onto the vascular endothelium before extravasation to the injured tissues. ICAM-1 may be involved in organ targeted tumor metastasis. The interaction of ICAM-1 with leukocyte function-associated antigen-1 (LFA-1) plays a part in leukocyte-endothelial cell recognition. This group also contains ICAM-2, which also interacts with LFA-1. Transmigration of immature dendritic cells across resting endothelium is dependent on the interaction of ICAM-2 with, yet unidentified, ligand(s) on the dendritic cells. ICAM-1 has five Ig-like domains and ICAM-2 has two. ICAM-1 may also act as host receptor for viruses and parasites.
Probab=98.46 E-value=1.9e-06 Score=59.67 Aligned_cols=81 Identities=20% Similarity=0.288 Sum_probs=54.7
Q ss_pred CCeeEeccccccccCCCcEEEEEEeec-CCCCe--eEEeeCCEEcCCCCeeEeceEEecccceeEEEEEcccccCCCe-E
Q psy15667 2 PPILTYSFIEQTLQPGPAVSLKCIASG-NPTPD--IGWTLDGFELPTNNRFVIGQFVSGHGDVISHVNISHVTVEDGG-E 77 (286)
Q Consensus 2 ~p~~~~~~~~~~~~~G~~~~l~C~~~g-~p~p~--v~W~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~I~~~~~~D~G-~ 77 (286)
|-.+++.+....+.+|+.++|+|.+.| .|.+. |.|++++..|... .+.... ........+|++. +..+|.| .
T Consensus 1 p~~V~l~~~p~~~~eG~~~tL~C~v~g~~P~a~L~i~W~rG~~~l~~~-~~~~~~--~~~~~~~stlt~~-~~r~D~g~~ 76 (100)
T cd05755 1 PDSVELSPLPSWQPVGKNYTLQCDVPGVAPRQNLTVVLLRGNETLSRQ-PFGDNT--KSPVNAPATITIT-VDREDHGAN 76 (100)
T ss_pred CceEEEecCCCcccCCCcEEEEEEEcCcCCCCcEEEEEeeCCEEcccc-eecccc--CCCceeEEEEEEe-cchhhCCcE
Confidence 445677777788899999999999886 68886 6999999988542 221100 0011122345554 5566666 9
Q ss_pred EEEEEEcCC
Q psy15667 78 YACVAENRA 86 (286)
Q Consensus 78 Y~C~a~n~~ 86 (286)
|+|+|.+..
T Consensus 77 ~sC~A~l~l 85 (100)
T cd05755 77 FSCETELDL 85 (100)
T ss_pred EEEEEEecc
Confidence 999999854
No 253
>cd05878 Ig_Aggrecan_like Immunoglobulin (Ig)-like domain of the aggrecan-like chondroitin sulfate proteoglycan core protein (CSPG). Ig_Aggrecan_like: immunoglobulin (Ig)-like domain of the aggrecan-like chondroitin sulfate proteoglycan core protein (CSPG)s. Included in this group are the Ig domains of other CSPGs: versican, and neurocan. In CSPGs this Ig-like domain is followed by hyaluronan (HA)-binding tandem repeats, and a C-terminal region with epidermal growth factor-like, lectin-like, and complement regulatory protein-like domains. Separating these N- and C-terminal regions is a nonhomologous glycosaminoglycan attachment region. In cartilage, aggrecan forms cartilage link protein stabilized aggregates with hyaluronan (HA). These aggregates contribute to the tissue's load bearing properties. Aggrecan and versican have a wide distribution in connective tissue and extracellular matrices. Neurocan is localized almost exclusively in nervous tissue. Aggregates having other CSPGs substi
Probab=98.46 E-value=6.1e-06 Score=58.77 Aligned_cols=37 Identities=22% Similarity=0.345 Sum_probs=31.2
Q ss_pred CeeeEEEcccCCCCCeEEEEEEEecccceeeEEEEEE
Q psy15667 249 FSSLLSINSVSAAHSGEYTCVASNTAAQARYSSKLQV 285 (286)
Q Consensus 249 ~~~~L~i~~v~~~d~G~Y~C~a~N~~g~~~~~~~L~V 285 (286)
....|.|.+++.+|+|.|.|..............|.|
T Consensus 70 ~~asL~I~~l~~sD~G~Y~C~v~~~~~~~~~~v~l~V 106 (110)
T cd05878 70 GDASLEISRLRSSDSGVYRCEVMHGIEDEQDTVPLEV 106 (110)
T ss_pred CcEEEEECCCChhhCEEEEEEEEeCCCcceEEEEEEE
Confidence 3567999999999999999999987766777777766
No 254
>cd05714 Ig_CSPGs_LP Immunoglobulin (Ig)-like domain of chondroitin sulfate proteoglycans (CSPGs), human cartilage link protein (LP) and similar proteins. Ig_CSPGs_LP: immunoglobulin (Ig)-like domain similar to that found in chondroitin sulfate proteoglycans (CSPGs) and human cartilage link protein (LP). Included in this group are the CSPGs aggrecan, versican, and neurocan. In CSPGs this Ig-like domain is followed by hyaluronan (HA)-binding tandem repeats, and a C-terminal region with epidermal growth factor-like, lectin-like, and complement regulatory protein-like domains. Separating these N- and C-terminal regions is a nonhomologous glycosaminoglycan attachment region. In cartilage, aggrecan forms cartilage link protein stabilized aggregates with hyaluronan (HA). These aggregates contribute to the tissue's load bearing properties. Aggrecan and versican have a wide distribution in connective tissue and extracellular matrices. Neurocan is localized almost exclusively in nervous tissue.
Probab=98.44 E-value=9.6e-07 Score=62.57 Aligned_cols=71 Identities=24% Similarity=0.351 Sum_probs=44.4
Q ss_pred CCCcEEEEEEeecCC------CCeeEEeeCC-----E-Ec--CCCCeeEec-e---EEe--cccceeEEEEEcccccCCC
Q psy15667 16 PGPAVSLKCIASGNP------TPDIGWTLDG-----F-EL--PTNNRFVIG-Q---FVS--GHGDVISHVNISHVTVEDG 75 (286)
Q Consensus 16 ~G~~~~l~C~~~g~p------~p~v~W~~~~-----~-~l--~~~~~~~~~-~---~~~--~~~~~~~~l~I~~~~~~D~ 75 (286)
.|++|+|.|.....+ .+.|.|++.. . .+ ..+.+.... + ... .......+|.|.+++.+|+
T Consensus 1 ~G~~V~L~C~~~~~~~~~~~~~~~i~W~k~~~~~~~~~~v~~~~~~~~~~~~~~~~r~~~~~~~~~~~sL~I~~v~~sD~ 80 (106)
T cd05714 1 LGGNVTLPCRFHLEPALSAPHGPRIKWTKLESDGAKEVDVLVAIGGRVKVYGSGRVRVPLYPADPGDASLVITDLRLEDS 80 (106)
T ss_pred CCCCEEEeEEeECCcccCCCCCcEEEEEEeCCCCCceEEEEEEcCCEEEEcCCCceEEEeeCCCCCcceEEECCCCHHHC
Confidence 489999999987653 5689999862 1 11 111111100 0 000 0011234699999999999
Q ss_pred eEEEEEEEcCC
Q psy15667 76 GEYACVAENRA 86 (286)
Q Consensus 76 G~Y~C~a~n~~ 86 (286)
|.|.|.+.+..
T Consensus 81 G~Y~C~v~~~~ 91 (106)
T cd05714 81 GRYRCEVIDGI 91 (106)
T ss_pred EEEEEEEEcCC
Confidence 99999998754
No 255
>cd05899 IgV_TCR_beta Immunoglobulin (Ig) variable (V) domain of T-cell receptor (TCR) bet a chain. IgV_TCR_beta: immunoglobulin (Ig) variable domain of the beta chain of alpha/beta T-cell antigen receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are composed of alpha and beta, or gamma and delta, polypeptide chains with variable (V) and constant (C) regions. This group includes the variable domain of the alpha chain of alpha/beta TCRs. Alpha/beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. The variable domain of TCRs is responsible for antigen recognition, and is located at the N-terminus of the receptor. Gamma/delta TCRs recognize intact protein antigens; they recognize proteins antigens directly and without antigen processing, and MHC independently of the bound peptide.
Probab=98.44 E-value=2.7e-06 Score=60.65 Aligned_cols=89 Identities=18% Similarity=0.305 Sum_probs=50.3
Q ss_pred ceEEecCCCEEEEeeEeeecCCeEEEEEcCCcccccccccCCCCCCCeEEEEEeeecCCCCCeEEEEeCCeeCCCCCCce
Q psy15667 163 KVTAIDGEGLSIKCPVAGYPIEEVHWEKVPPKIESFAFPFDGLPEGARTRVICGVTHGDPPLTIRWLKDGKPLSPRFPVN 242 (286)
Q Consensus 163 ~~~~~~g~~~~l~c~~~~~p~~~v~w~~~~~~~~~~~~~~~~~~~g~~~~l~c~~~~~~p~~~~~W~~~g~~~~~~~~~~ 242 (286)
.+.+.+|++++|.|.+.+ +.+.+.|.+..+. +...+..-... .... . .++ ....++.
T Consensus 7 ~~~v~~G~~v~l~C~~~~-~~~~v~Wykq~~g--------------~~~~~l~~~~~--~~~~--~-~~~---~~~~r~~ 63 (110)
T cd05899 7 YLIKGRGQSVTLRCSQTS-GHDNMYWYRQDPG--------------KGLQLLFYSNG--GSLN--E-EEG---DPKDRFS 63 (110)
T ss_pred ceEEcCCCcEEEEEEECC-CCCEEEEEEECCC--------------CCcEEEEEEcC--CCce--E-ecC---ccCCceE
Confidence 456778999999999887 6678999874321 11111110000 0000 0 000 0111222
Q ss_pred eeecCCCeeeEEEcccCCCCCeEEEEEEEecc
Q psy15667 243 VSDLDSFSSLLSINSVSAAHSGEYTCVASNTA 274 (286)
Q Consensus 243 ~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~N~~ 274 (286)
+.........|.|.+++++|+|.|.|.+.+..
T Consensus 64 ~~~~~~~~~~L~I~~~~~~Dsg~Y~Ca~~~~~ 95 (110)
T cd05899 64 ASRPSLTRSSLTIKSAEPEDSAVYLCASSLGG 95 (110)
T ss_pred EECcCCCccEEEECCCChhhCEEEEEEeeCCC
Confidence 22221234579999999999999999998753
No 256
>cd05880 Ig_EVA1 Immunoglobulin (Ig)-like domain of epithelial V-like antigen 1 (EVA). Ig_EVA: immunoglobulin (Ig) domain of epithelial V-like antigen 1 (EVA). EVA is also known as myelin protein zero-like 2. EVA is an adhesion molecule, which may play a role in structural organization of the thymus and early lymphocyte development.
Probab=98.43 E-value=1.8e-06 Score=62.06 Aligned_cols=79 Identities=27% Similarity=0.371 Sum_probs=48.3
Q ss_pred ccccccccCCCcEEEEEEeecCC----CCeeEEeeC----CEE--c---C------CCCeeEeceEEecc-cceeEEEEE
Q psy15667 8 SFIEQTLQPGPAVSLKCIASGNP----TPDIGWTLD----GFE--L---P------TNNRFVIGQFVSGH-GDVISHVNI 67 (286)
Q Consensus 8 ~~~~~~~~~G~~~~l~C~~~g~p----~p~v~W~~~----~~~--l---~------~~~~~~~~~~~~~~-~~~~~~l~I 67 (286)
.+.++.+.+|++++|.|.....+ ...+.|++. +.+ + . ...+|...-....+ .....+|.|
T Consensus 4 ~~~~v~~~~G~~v~L~C~~s~~~~~~~~~~i~W~~~~~~~~~~~~v~~~~~~~~~~~~~~f~~R~~~~~~~~~~~~sL~I 83 (115)
T cd05880 4 TSKEVEAVNGTDVRLKCTFSSSAPIGDTLVITWNFRPLDGGREESVFYYHKRPYPPPDGRFKGRVVWDGNIMRRDASILI 83 (115)
T ss_pred cCceEEEEcCCCEEEEEEEEeCCCCCCcEEEEEEEECCCCCceeEEEEECCCccccCcccccCeEEEecCCcCCceEEEE
Confidence 46677899999999999866433 246999752 111 1 0 11122110000000 011245999
Q ss_pred cccccCCCeEEEEEEEcCC
Q psy15667 68 SHVTVEDGGEYACVAENRA 86 (286)
Q Consensus 68 ~~~~~~D~G~Y~C~a~n~~ 86 (286)
.+++.+|+|.|.|.+.|..
T Consensus 84 ~~v~~~D~G~Y~C~v~~~~ 102 (115)
T cd05880 84 WQLQPTDNGTYTCQVKNPP 102 (115)
T ss_pred eeCChhhCEEEEEEEEeCC
Confidence 9999999999999998753
No 257
>cd05886 Ig1_Nectin-1_like First immunoglobulin (Ig) domain of nectin-1 (also known as poliovirus receptor related protein 1, or as CD111) and similar proteins. Ig1_Nectin-1_like: domain similar to the first immunoglobulin (Ig) domain of nectin-1 (also known as poliovirus receptor related protein 1, or as CD111). Nectin-1 belongs to the nectin family comprised of four transmembrane glycoproteins (nectins-1 through -4). Nectins are synaptic cell adhesion molecules (CAMs) which facilitate adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. In addition nectins heterophilically trans-interact with other CAMs such as nectin-like molecules (Necls), nectin-1 for example, has been shown to trans-interact with Necl-1. Nectins also interact with various other proteins, including the actin filament (F-actin)-binding protein, afadin. Mutation in the human nectin-1 gene is
Probab=98.43 E-value=3.8e-06 Score=58.44 Aligned_cols=36 Identities=17% Similarity=0.338 Sum_probs=33.0
Q ss_pred eeeEEEcccCCCCCeEEEEEEEe-cccceeeEEEEEE
Q psy15667 250 SSLLSINSVSAAHSGEYTCVASN-TAAQARYSSKLQV 285 (286)
Q Consensus 250 ~~~L~i~~v~~~d~G~Y~C~a~N-~~g~~~~~~~L~V 285 (286)
...|.|.+++.+|.|.|+|...| ..|..+..+.|.|
T Consensus 62 daSi~i~nl~~~D~G~Y~C~v~t~P~g~~~~~~~L~V 98 (99)
T cd05886 62 DGTISLSRLELEDEGVYICEFATFPTGNRESQLNLTV 98 (99)
T ss_pred cceEEEcCCccccCEEEEEEEEeCCCCCeEEEEEEEE
Confidence 46799999999999999999999 6898899999987
No 258
>cd05741 Ig_CEACAM_D1_like First immunoglobulin (Ig)-like domain of carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM) and similar proteins. Ig_CEACAM_D1_like : immunoglobulin (IG)-like domain 1 in carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM) protein subfamily-like. The CEA family is a group of anchored or secreted glycoproteins, expressed by epithelial cells, leukocytes, endothelial cells and placenta. The CEA family is divided into the CEACAM and pregnancy-specific glycoprotein (PSG) subfamilies. This group represents the CEACAM subfamily. CEACAM1 has many important cellular functions, it is a cell adhesion molecule, and a signaling molecule that regulates the growth of tumor cells, it is an angiogenic factor, and is a receptor for bacterial and viral pathogens, including mouse hepatitis virus (MHV). In mice, four isoforms of CEACAM1 generated by alternative splicing have either two [D1, D4] or four [D1-D4] Ig-like domains on the cell surf
Probab=98.42 E-value=6.6e-07 Score=61.57 Aligned_cols=68 Identities=18% Similarity=0.176 Sum_probs=45.9
Q ss_pred CCcEEEEEEeecCCCCeeEEeeCCEEcCC--------------CCeeEeceEEecccceeEEEEEcccccCCCeEEEEEE
Q psy15667 17 GPAVSLKCIASGNPTPDIGWTLDGFELPT--------------NNRFVIGQFVSGHGDVISHVNISHVTVEDGGEYACVA 82 (286)
Q Consensus 17 G~~~~l~C~~~g~p~p~v~W~~~~~~l~~--------------~~~~~~~~~~~~~~~~~~~l~I~~~~~~D~G~Y~C~a 82 (286)
|++|+|.|.....+...+.|+++...... ..++.. ......+ .+|.|.+++.+|+|.|.|++
T Consensus 1 G~~VtL~c~~~~~~~~~i~W~~~~~~~~~~~i~~~~~~~~~~~~~~~~~--R~~~~~~--~sL~I~~l~~~DsG~Y~c~v 76 (92)
T cd05741 1 GESVTLPVSNLPENLQEITWYKGKDKSVEAEIASYIATNSTVFGPAYSG--RETIYPN--GSLLIQNLTKEDSGTYTLQI 76 (92)
T ss_pred CCcEEEEcccCCCCCEEEEEECCCCCCcceEEEEEecCCceeECCCcCC--eEEEcCC--ceEEEccCCchhcEEEEEEE
Confidence 89999999887766778999987533210 011110 0111122 35999999999999999999
Q ss_pred EcCCEE
Q psy15667 83 ENRAGT 88 (286)
Q Consensus 83 ~n~~g~ 88 (286)
....+.
T Consensus 77 ~~~~~~ 82 (92)
T cd05741 77 ISTNGV 82 (92)
T ss_pred EcCCCc
Confidence 886543
No 259
>cd00099 IgV Immunoglobulin variable domain (IgV). IgV: Immunoglobulin variable domain (IgV). Members of the IgV family are components of immunoglobulin (Ig) and T cell receptors. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. In Ig, each chain is composed of one variable domain (IgV) and one or more constant domains (IgC); these names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. Within the variable domain, there are regions of even more variability called the hypervariable or complementarity-determining regions (CDRs) which are responsible for antigen binding. A predominant feature of most Ig domains is the disulfide bridge connecting 2 beta-sheets with a tryptophan residue packed against the disulfide bond.
Probab=98.42 E-value=1.7e-06 Score=61.11 Aligned_cols=86 Identities=17% Similarity=0.295 Sum_probs=50.4
Q ss_pred EEecCCCEEEEeeEeee-cCCeEEEEEcCCcccccccccCCCCCCCeEEEEEeeecCCCCCeEEEEeCCeeC--CCCCCc
Q psy15667 165 TAIDGEGLSIKCPVAGY-PIEEVHWEKVPPKIESFAFPFDGLPEGARTRVICGVTHGDPPLTIRWLKDGKPL--SPRFPV 241 (286)
Q Consensus 165 ~~~~g~~~~l~c~~~~~-p~~~v~w~~~~~~~~~~~~~~~~~~~g~~~~l~c~~~~~~p~~~~~W~~~g~~~--~~~~~~ 241 (286)
.+..|++++|.|.+.+. +...+.|.+..... ...+.+ .....+... ....++
T Consensus 2 ~v~~G~~v~L~C~~~~~~~~~~v~W~k~~~~~--------------~~~~i~-----------~~~~~~~~~~~~~~~r~ 56 (105)
T cd00099 2 SVSEGESVTLSCTYSGSFSSYYIFWYRQKPGK--------------GPELLI-----------YISSNGSQYAGGVKGRF 56 (105)
T ss_pred eecCCCCEEEEEEEeCCcCcceEEEEEECCCC--------------CCEEEE-----------EEeCCCCccCccCCCcE
Confidence 46689999999998876 67778888754310 000111 111111000 011222
Q ss_pred eeeecC-CCeeeEEEcccCCCCCeEEEEEEEeccc
Q psy15667 242 NVSDLD-SFSSLLSINSVSAAHSGEYTCVASNTAA 275 (286)
Q Consensus 242 ~~~~~~-~~~~~L~i~~v~~~d~G~Y~C~a~N~~g 275 (286)
.+.... .....|.|.+++.+|+|.|.|.+.+..+
T Consensus 57 ~~~~~~~~~~~sL~I~~v~~~D~G~Y~C~v~~~~~ 91 (105)
T cd00099 57 SGTRDSSKSSFTLTISSLQPEDSAVYYCAVSLSGG 91 (105)
T ss_pred EEEEeccCCEEEEEECCCCHHHCEEEEEEEecCCC
Confidence 222211 1345799999999999999999998664
No 260
>cd05902 Ig_Neurocan Immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), neurocan. Ig_Neurocan: immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), neurocan. In CSPGs, the Ig-like domain is followed by hyaluronan (HA)-binding tandem repeats, and a C-terminal region with epidermal growth factor-like, lectin-like, and complement regulatory protein-like domains. Separating these N- and C-terminal regions is a nonhomologous glycosaminoglycan attachment region. In cartilage, the CSPG aggrecan (not included in this group) forms cartilage link protein stabilized aggregates with HA. These aggregates contribute to the tissue's load bearing properties. Unlike aggrecan which is widely distributed in connective tissue and extracellular matrices, neurocan is localized almost exclusively in nervous tissue. Aggregates having other CSPGs substituting for aggrecan may contribute to the structural integrity of many differen
Probab=98.41 E-value=2.9e-06 Score=60.18 Aligned_cols=38 Identities=18% Similarity=0.360 Sum_probs=32.7
Q ss_pred CeeeEEEcccCCCCCeEEEEEEEecccceeeEEEEEEC
Q psy15667 249 FSSLLSINSVSAAHSGEYTCVASNTAAQARYSSKLQVK 286 (286)
Q Consensus 249 ~~~~L~i~~v~~~d~G~Y~C~a~N~~g~~~~~~~L~V~ 286 (286)
...+|.|.+++.+|+|.|.|.........+..+.|.|.
T Consensus 70 ~~asL~i~nv~~~D~G~Y~C~v~~g~~~~~~~v~L~V~ 107 (110)
T cd05902 70 YNASLVLSRLRYSDSGTYRCEVVLGINDEQDTVPLEVT 107 (110)
T ss_pred ceEEEEECCCCHHHCEEEEEEEEECCcccEEEEEEEEE
Confidence 35789999999999999999999977777788888763
No 261
>cd05761 Ig2_Necl-1-4_like Second immunoglobulin (Ig)-like domain of the nectin-like molecules Necl-1 - Necl-4 (also known as cell adhesion molecules CADM3, CADM1, CADM2, and CADM4, respectively). Ig2_Necl-1-4_like: domain similar to the second immunoglobulin (Ig)-like domain of the nectin-like molecules Necl-1 (also known as cell adhesion molecule 3 (CADM3)), Necl-2 (CADM1), Necl-3 (CADM2) and Necl-4 (CADM4). These nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). These have an extracellular region containing three Ig-like domains, one transmembrane region, and one cytoplasmic region. The N-terminal Ig-like domain of the extracellular region belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-1 and Necl-2 have Ca(2+)-independent homophilic and heterophilic cell-cel
Probab=98.40 E-value=1.7e-06 Score=58.21 Aligned_cols=64 Identities=27% Similarity=0.415 Sum_probs=41.4
Q ss_pred cEEEEEEeec-CCCCeeEEeeCCEEcCCCCeeEeceEEecccc---eeEEEEEcccccCCCeEEEEEEEcCC
Q psy15667 19 AVSLKCIASG-NPTPDIGWTLDGFELPTNNRFVIGQFVSGHGD---VISHVNISHVTVEDGGEYACVAENRA 86 (286)
Q Consensus 19 ~~~l~C~~~g-~p~p~v~W~~~~~~l~~~~~~~~~~~~~~~~~---~~~~l~I~~~~~~D~G~Y~C~a~n~~ 86 (286)
.++|.|.+.+ .|.+.++|++++++|....... ....++ ....|.+.....+|.+.|+|+|.+..
T Consensus 1 ~~~L~C~~~~~~P~~~v~W~~~~~~l~~~~~~~----~~~~~~~~~~~s~l~~~~~~~d~g~~~~C~v~h~~ 68 (82)
T cd05761 1 EVELTCTSSGSKPAATIRWFKGDKELKGVKLKE----EDENGKTFTVTSSLRFQVDREDDGAPIICRVDHPA 68 (82)
T ss_pred CEEEEEEecCcCcCCeEEEEECCEEccCceeeE----ecCCCCEEEEEEEEEEEcchhhCCCEEEEEEeChh
Confidence 3689999986 5889999999999986433111 111121 12335554444555579999998864
No 262
>cd05774 Ig_CEACAM_D1 First immunoglobulin (Ig)-like domain of carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM). IG_CEACAM_D1: immunoglobulin (Ig)-like domain 1 in carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM) protein subfamily. The CEA family is a group of anchored or secreted glycoproteins, expressed by epithelial cells, leukocytes, endothelial cells and placenta. The CEA family is divided into the CEACAM and pregnancy-specific glycoprotein (PSG) subfamilies. This group represents the CEACAM subfamily. CEACAM1 has many important cellular functions, it is a cell adhesion molecule, and a signaling molecule that regulates the growth of tumor cells, it is an angiogenic factor, and is a receptor for bacterial and viral pathogens, including mouse hepatitis virus (MHV). In mice, four isoforms of CEACAM1 generated by alternative splicing have either two [D1, D4] or four [D1-D4] Ig-like domains on the cell surface. This family corresponds to the D
Probab=98.40 E-value=1.4e-06 Score=61.34 Aligned_cols=73 Identities=16% Similarity=0.157 Sum_probs=49.0
Q ss_pred eccccccccCCCcEEEEEEeecCCCCeeEEeeCCEE-----c----CC----------CCeeEeceEEecccceeEEEEE
Q psy15667 7 YSFIEQTLQPGPAVSLKCIASGNPTPDIGWTLDGFE-----L----PT----------NNRFVIGQFVSGHGDVISHVNI 67 (286)
Q Consensus 7 ~~~~~~~~~~G~~~~l~C~~~g~p~p~v~W~~~~~~-----l----~~----------~~~~~~~~~~~~~~~~~~~l~I 67 (286)
+.+....+.+|++++|.|.....+...+.|+|.... + +. ..|.. ...++ +|.|
T Consensus 3 ie~~p~~~~~G~~V~L~v~~~p~~~~~~~W~kg~~~~~~~~I~~y~~~~~~~~~gp~~~gR~~----~~~ng----SL~I 74 (105)
T cd05774 3 IELVPPQVAEGENVLLLVHNLPENLLAYAWYKGKTVSPNFLIASYIISTNSSTPGPAYSGRET----IYPNG----SLLI 74 (105)
T ss_pred EeccCCcccCCCCEEEEecCCCCCceEEEEEcCCCCCCCEEEEEEECCCcccccCcccCCcEE----EeCCC----cEEE
Confidence 345556788999999999665444458999995321 1 00 11111 11122 5899
Q ss_pred cccccCCCeEEEEEEEcCCE
Q psy15667 68 SHVTVEDGGEYACVAENRAG 87 (286)
Q Consensus 68 ~~~~~~D~G~Y~C~a~n~~g 87 (286)
.+++..|+|.|+|++.+...
T Consensus 75 ~~v~~~D~G~Y~~~v~~~~~ 94 (105)
T cd05774 75 QNVTQKDTGFYTLQTITTNF 94 (105)
T ss_pred ecCCcccCEEEEEEEEeCCc
Confidence 99999999999999988653
No 263
>cd05715 Ig_P0-like Immunoglobulin (Ig)-like domain of Protein zero (P0) and similar proteins. Ig_P0ex-like: domain similar to the immunoglobulin (Ig) domain of Protein zero (P0). P0 accounts for over 50% of the total protein in peripheral nervous system (PNS) myelin. P0 is a single-pass transmembrane glycoprotein with a highly basic intracellular domain and an extracellular Ig domain. The extracellular domain of P0 (P0-ED) is similar to the Ig variable domain, carrying one acceptor sequence for N-linked glycosylation. P0 plays a role in membrane adhesion in the spiral wraps of the myelin sheath. The intracellular domain is thought to mediate membrane apposition of the cytoplasmic faces and may, through electrostatic interactions, interact directly with lipid headgroups. It is thought that homophilic interactions of the P0 extracellular domain mediate membrane juxtaposition in the extracellular space of PNS myelin. This group also contains the Ig domain of Sodium channel subunit beta-2
Probab=98.39 E-value=2.3e-06 Score=61.68 Aligned_cols=78 Identities=22% Similarity=0.327 Sum_probs=47.9
Q ss_pred ccccccccCCCcEEEEEEeecCC----CCeeEEeeCCE------Ec--C--------CCCeeEeceEEecc-cceeEEEE
Q psy15667 8 SFIEQTLQPGPAVSLKCIASGNP----TPDIGWTLDGF------EL--P--------TNNRFVIGQFVSGH-GDVISHVN 66 (286)
Q Consensus 8 ~~~~~~~~~G~~~~l~C~~~g~p----~p~v~W~~~~~------~l--~--------~~~~~~~~~~~~~~-~~~~~~l~ 66 (286)
.+.+..+.+|++++|.|...... ...+.|++... .+ . ...+|...-....+ .....+|.
T Consensus 4 ~p~~v~v~~G~~vtL~C~~s~~~~~~~~~~v~W~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~ 83 (116)
T cd05715 4 TPREVYAVNGSDVRLKCTFSSSEPISDDISVTWSFQPEGSGDTESIFHYHKGPYYPLKDGRFKDRVEWVGNPSRKDASIV 83 (116)
T ss_pred cCCeEEEEcCCCeEEEeEEeCCCCcCCceEEEEEEecCCCCCcEEEEEEcCCccccccCccccCcEEEecCCcCCeeEEE
Confidence 46677889999999999876432 25699986321 11 0 11122100000000 01124699
Q ss_pred EcccccCCCeEEEEEEEcC
Q psy15667 67 ISHVTVEDGGEYACVAENR 85 (286)
Q Consensus 67 I~~~~~~D~G~Y~C~a~n~ 85 (286)
|.+++.+|+|.|.|.+.|.
T Consensus 84 I~~v~~~D~G~Y~C~v~~~ 102 (116)
T cd05715 84 IHNLQFTDNGTYTCDVKNP 102 (116)
T ss_pred EeeCCcccCEEEEEEEEeC
Confidence 9999999999999998874
No 264
>cd05846 Ig1_MRC-OX-2_like First immunoglobulin (Ig) domain of rat MRC OX-2 antigen (also known as CD200) and similar proteins. Ig1_ MRC-OX-2_like: domain similar to the first immunoglobulin (Ig) domain of rat MRC OX-2 antigen (also known as CD200). MRC OX-2 is a membrane glycoprotein expressed in a variety of lymphoid and non-lymphoid cells in rats. It has a similar broad distribution pattern in humans. MRC OX-2 may regulate myeloid cell activity. The protein has an extracellular portion containing two Ig-like domains, a transmembrane portion, and a cytoplasmic portion.
Probab=98.39 E-value=3.3e-06 Score=58.76 Aligned_cols=37 Identities=22% Similarity=0.319 Sum_probs=32.0
Q ss_pred eeeEEEcccCCCCCeEEEEEEEe-cccceeeEEEEEEC
Q psy15667 250 SSLLSINSVSAAHSGEYTCVASN-TAAQARYSSKLQVK 286 (286)
Q Consensus 250 ~~~L~i~~v~~~d~G~Y~C~a~N-~~g~~~~~~~L~V~ 286 (286)
...|.|.+++.+|+|.|.|...+ ..|..+..+.|+|.
T Consensus 60 ~~sL~I~nv~~~D~G~Y~C~~~~~p~g~~~~~~~L~v~ 97 (97)
T cd05846 60 STSITIWNVTLEDEGCYKCIFNTFPDGSKSGTMCLTVY 97 (97)
T ss_pred ccEEEEeCCceeeeEEEEEEEEeCCCCCeeeEEEEEEC
Confidence 56799999999999999999775 57888888889884
No 265
>cd04984 IgV_L_lambda Immunoglobulin (Ig) lambda light chain variable (V) domain. IgV_L_lambda: Immunoglobulin (Ig) light chain, lambda type, variable (V) domain. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. In Ig, each chain is composed of one variable domain (IgV) and one or more constant domains (IgC); these names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. There are five types of heavy chains (alpha, gamma, delta, epsilon, and mu), which determine the type of immunoglobulin: IgA, IgG, IgD, IgE, and IgM, respectively. In higher vertebrates, there are two types of light chain, designated kappa and lambda, which seem to be functionally identical, and can associate with any of the heavy chains.
Probab=98.39 E-value=2.2e-06 Score=59.74 Aligned_cols=67 Identities=21% Similarity=0.394 Sum_probs=46.2
Q ss_pred cccCCCcEEEEEEeecC--CCCeeEEeeCCE--Ec---C---------CCCeeEeceEEecccceeEEEEEcccccCCCe
Q psy15667 13 TLQPGPAVSLKCIASGN--PTPDIGWTLDGF--EL---P---------TNNRFVIGQFVSGHGDVISHVNISHVTVEDGG 76 (286)
Q Consensus 13 ~~~~G~~~~l~C~~~g~--p~p~v~W~~~~~--~l---~---------~~~~~~~~~~~~~~~~~~~~l~I~~~~~~D~G 76 (286)
++.+|++++|.|...+. ....+.|++... .+ - ..+|+... .......|.|.+++.+|+|
T Consensus 2 ~v~~G~~v~l~C~~~~~~~~~~~i~Wy~q~~g~~~~~l~~~~~~~~~~~~~rf~~~-----~~~~~~~L~I~~~~~~Dsg 76 (98)
T cd04984 2 SVSPGETVTITCTGSSGNISGNYVNWYQQKPGSAPRYLIYEDSDRPSGIPDRFSGS-----KSGNTASLTISGAQTEDEA 76 (98)
T ss_pred ccCCCCCEEEEEEEcCCCcCCCCEEEEEECCCCCccEEEEeccccCCCCCCCEEEE-----ccCCEEEEEECCCChhhCE
Confidence 57899999999998765 556799997421 11 0 01244321 1112346999999999999
Q ss_pred EEEEEEEc
Q psy15667 77 EYACVAEN 84 (286)
Q Consensus 77 ~Y~C~a~n 84 (286)
.|.|.+.+
T Consensus 77 ~Y~C~~~~ 84 (98)
T cd04984 77 DYYCQVWD 84 (98)
T ss_pred EEEEEEcc
Confidence 99998765
No 266
>cd05883 Ig2_Necl-2 Second immunoglobulin (Ig)-like domain of nectin-like molecule 2 (also known as cell adhesion molecule 1 (CADM1)). Ig2_Necl-2: second immunoglobulin (Ig)-like domain of nectin-like molecule 2 (also known as cell adhesion molecule 1 (CADM1)). Nectin-like molecules (Necls) have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). These have an extracellular region containing three Ig-like domains, one transmembrane region, and one cytoplasmic region. Necl-2 has Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-1 is expressed in a wide variety of tissues, and is a putative tumour suppressor gene, which is downregulated in aggressive neuroblastoma. Ig domains are likely to participate in ligand binding and recognition.
Probab=98.39 E-value=2.5e-06 Score=56.73 Aligned_cols=64 Identities=28% Similarity=0.408 Sum_probs=42.0
Q ss_pred EEEEEEeec-CCCCeeEEeeCCEEcCCCCeeEeceEEecccceeEEEEEcccccCCCe-EEEEEEEcCC
Q psy15667 20 VSLKCIASG-NPTPDIGWTLDGFELPTNNRFVIGQFVSGHGDVISHVNISHVTVEDGG-EYACVAENRA 86 (286)
Q Consensus 20 ~~l~C~~~g-~p~p~v~W~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~I~~~~~~D~G-~Y~C~a~n~~ 86 (286)
+.|.|.+.| .|+++|+|++++.+|........ .........+.|.+ ..+.+|.| .|+|+|.|..
T Consensus 2 ~~L~C~s~gSkP~A~I~W~k~~~~l~~~~~~~~--~~~~~~t~~S~L~~-~p~~eDdG~~~~C~a~~~~ 67 (82)
T cd05883 2 IELNCTAMASKPAATIRWFKGNKELTGKSTVEE--TWSRMFTVTSQLML-KVTKEDDGVPVICLVDHPA 67 (82)
T ss_pred EEEEEEecCCCCCCEEEEEECCEECcCccccee--ccCCCcEEEEEEEE-ECchhhCCCEEEEEEcCcc
Confidence 689998775 79999999999999965422110 00111123445666 45555555 9999999964
No 267
>cd05761 Ig2_Necl-1-4_like Second immunoglobulin (Ig)-like domain of the nectin-like molecules Necl-1 - Necl-4 (also known as cell adhesion molecules CADM3, CADM1, CADM2, and CADM4, respectively). Ig2_Necl-1-4_like: domain similar to the second immunoglobulin (Ig)-like domain of the nectin-like molecules Necl-1 (also known as cell adhesion molecule 3 (CADM3)), Necl-2 (CADM1), Necl-3 (CADM2) and Necl-4 (CADM4). These nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). These have an extracellular region containing three Ig-like domains, one transmembrane region, and one cytoplasmic region. The N-terminal Ig-like domain of the extracellular region belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-1 and Necl-2 have Ca(2+)-independent homophilic and heterophilic cell-cel
Probab=98.39 E-value=3.3e-06 Score=56.72 Aligned_cols=65 Identities=22% Similarity=0.372 Sum_probs=43.6
Q ss_pred EEEEEeeecCCCCCeEEEEeCCeeCCCCCCceeeecC----CCeeeEEEcccCCCCCeEEEEEEEecccc
Q psy15667 211 TRVICGVTHGDPPLTIRWLKDGKPLSPRFPVNVSDLD----SFSSLLSINSVSAAHSGEYTCVASNTAAQ 276 (286)
Q Consensus 211 ~~l~c~~~~~~p~~~~~W~~~g~~~~~~~~~~~~~~~----~~~~~L~i~~v~~~d~G~Y~C~a~N~~g~ 276 (286)
+.|.|.+..+.|.+.+.|+++|+.+.... ....... .....|.+.....+|.+.|+|.|.|....
T Consensus 2 ~~L~C~~~~~~P~~~v~W~~~~~~l~~~~-~~~~~~~~~~~~~~s~l~~~~~~~d~g~~~~C~v~h~~l~ 70 (82)
T cd05761 2 VELTCTSSGSKPAATIRWFKGDKELKGVK-LKEEDENGKTFTVTSSLRFQVDREDDGAPIICRVDHPALK 70 (82)
T ss_pred EEEEEEecCcCcCCeEEEEECCEEccCce-eeEecCCCCEEEEEEEEEEEcchhhCCCEEEEEEeChhcC
Confidence 46888888888889999999999885332 1111111 11334555555566678999999998753
No 268
>cd05775 Ig_SLAM-CD84_like_N N-terminal immunoglobulin (Ig)-like domain of the signaling lymphocyte activation molecule (SLAM) family, CD84_like. Ig_SLAM-CD84_like_N: The N-terminal immunoglobulin (Ig)-like domain of the signaling lymphocyte activation molecule (SLAM) family, CD84_like. The SLAM family is a group of immune-cell specific receptors that can regulate both adaptive and innate immune responses. Members of this group include proteins such as CD84, SLAM (CD150), Ly-9 (CD229), NTB-A (ly-108, SLAM6), 19A (CRACC), and SLAMF9. The genes coding for the SLAM family are nested on chromosome 1, in humans at 1q23, and in mice at 1H2. The SLAM family is a subset of the CD2 family, which also includes CD2 and CD58 located on chromosome 1 at 1p13 in humans. In mice, CD2 is located on chromosome 3, and there is no CD58 homolog. The SLAM family proteins are organized as an extracellular domain with either two or four Ig-like domains, a single transmembrane segment, and a cytoplasmic region
Probab=98.37 E-value=2.6e-06 Score=59.22 Aligned_cols=36 Identities=14% Similarity=0.240 Sum_probs=29.0
Q ss_pred eeeEEEcccCCCCCeEEEEEEEecccce-eeEEEEEE
Q psy15667 250 SSLLSINSVSAAHSGEYTCVASNTAAQA-RYSSKLQV 285 (286)
Q Consensus 250 ~~~L~i~~v~~~d~G~Y~C~a~N~~g~~-~~~~~L~V 285 (286)
...|.|.+++.+|+|.|.|...+..|.. ...+.|.|
T Consensus 60 ~~sL~I~~~~~~DsG~Y~c~v~~~~~~~~~~~f~L~v 96 (97)
T cd05775 60 DYSLQISNLKMEDAGSYRAEINTKNGVTITKEFTLHI 96 (97)
T ss_pred ceeEEECCCchHHCEEEEEEEEcCCCCeEEEEEEEEe
Confidence 4679999999999999999999887644 45555554
No 269
>cd04982 IgV_TCR_gamma Immunoglobulin (Ig) variable (V) domain of T-cell receptor (TCR) gamma chain. IgV_TCR_gamma: immunoglobulin (Ig) variable (V) domain of the gamma chain of gamma/delta T-cell receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are heterodimers consisting of alpha and beta chains or gamma and delta chains. Each chain contains a variable (V) and a constant (C) region. The majority of T cells contain alpha/beta TCRs but a small subset contain gamma/delta TCRs. Alpha/beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. Gamma/delta TCRs recognize intact protein antigens; they recognize protein antigens directly and without antigen processing, and MHC independently of the bound peptide. Gamma/delta T cells can also be stimulated by non-peptide antigens such as small phosphate- or amine-containing compounds. The variable domain of gamma/delta TCRs is responsible for antigen recognition and is
Probab=98.37 E-value=5.6e-06 Score=59.62 Aligned_cols=85 Identities=16% Similarity=0.296 Sum_probs=50.3
Q ss_pred ceEEecCCCEEEEeeEee--ecCCeEEEEEcCCcccccccccCCCCCCCeEEEEEeeecCCCCCeEEEEeCCeeC----C
Q psy15667 163 KVTAIDGEGLSIKCPVAG--YPIEEVHWEKVPPKIESFAFPFDGLPEGARTRVICGVTHGDPPLTIRWLKDGKPL----S 236 (286)
Q Consensus 163 ~~~~~~g~~~~l~c~~~~--~p~~~v~w~~~~~~~~~~~~~~~~~~~g~~~~l~c~~~~~~p~~~~~W~~~g~~~----~ 236 (286)
.+.+.+|++++|.|.+.+ .+.+.+.|.+..+.-. |.--+.+..++... .
T Consensus 7 ~~~~~~G~~v~l~C~~~~~~~~~~~v~Wyrq~~g~~-------------------------~~~l~~~~~~~~~~~~~~~ 61 (116)
T cd04982 7 SITREESKSVTISCKVSGIDFSTTYIHWYRQKPGQA-------------------------LERLLYVSSTSTQRKLSGG 61 (116)
T ss_pred eEEeCCCCCEEEEEEEeCCCccccEEEEEEECCCCC-------------------------CEEEEEEecCCCcEEeCcc
Confidence 345668999999999877 6777899988532110 00001112111100 0
Q ss_pred CCCCceeeecCC-CeeeEEEcccCCCCCeEEEEEEEe
Q psy15667 237 PRFPVNVSDLDS-FSSLLSINSVSAAHSGEYTCVASN 272 (286)
Q Consensus 237 ~~~~~~~~~~~~-~~~~L~i~~v~~~d~G~Y~C~a~N 272 (286)
...++.+..... ....|.|.+++.+|+|.|.|.+..
T Consensus 62 ~~~r~~~~~~~~~~~~~L~I~~~~~~Dsg~Y~C~~~~ 98 (116)
T cd04982 62 TKNKFEARKDVGKSTSTLTIQNLEKEDSATYYCAYWE 98 (116)
T ss_pred cCCCEEEEEECCCCEEEEEEEECCHHHCEEEEEEEec
Confidence 112333332221 356899999999999999999874
No 270
>PF13927 Ig_3: Immunoglobulin domain; PDB: 2D3V_A 1G0X_A 1VDG_A 1P7Q_D 3D2U_H 1UFU_A 1UGN_A 3VH8_H 3OQ3_B 4DKD_C ....
Probab=98.36 E-value=2.9e-07 Score=60.43 Aligned_cols=58 Identities=36% Similarity=0.670 Sum_probs=37.6
Q ss_pred EEEEEeeecCCCCCeEEEEeCCeeCCCCCCceeeecCCCeeeEEEcccCCCCCeEEEEEEEe
Q psy15667 211 TRVICGVTHGDPPLTIRWLKDGKPLSPRFPVNVSDLDSFSSLLSINSVSAAHSGEYTCVASN 272 (286)
Q Consensus 211 ~~l~c~~~~~~p~~~~~W~~~g~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~N 272 (286)
+.|.|.+..+.+.+.+.|+ +...... ............|.|.++..+|.|.|+|.|.|
T Consensus 18 ~~l~C~~~~~~~~~~~~W~-~~~~~~~---~~~~~~~~~~~~L~i~~v~~~~~g~y~C~a~N 75 (75)
T PF13927_consen 18 VTLTCSAEGGPPPPSISWY-DSNPSFN---SNSRGSSSSNSTLTISNVTRSDNGTYTCIASN 75 (75)
T ss_dssp EEEEEEESSEESSEEEEEE-TEEEEEE---EEEEEEEEEEEEEEESSCCGGGTEEEEEEEEE
T ss_pred EEEEEEEccccCCeEEEEE-ecCCcee---eeeeeccceeeEEEEccCCHHhCcEEEEEEEC
Confidence 7777776655557788888 1111000 00001112367899999999999999999998
No 271
>cd04980 IgV_L_kappa Immunoglobulin (Ig) light chain, kappa type, variable (V) domain. IgV_L_kappa: Immunoglobulin (Ig) light chain, kappa type, variable (V) domain. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. In Ig, each chain is composed of one variable domain (IgV) and one or more constant domains (IgC); these names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. There are five types of heavy chains (alpha, gamma, delta, epsilon, and mu), which determine the type of immunoglobulin: IgA, IgG, IgD, IgE, and IgM, respectively. In higher vertebrates, there are two types of light chain, designated kappa and lambda, which seem to be functionally identical, and can associate with any of the heavy chains.
Probab=98.33 E-value=6.4e-06 Score=58.29 Aligned_cols=84 Identities=15% Similarity=0.224 Sum_probs=48.8
Q ss_pred ceEEecCCCEEEEeeEeeec-CCeEEEEEcCCcccccccccCCCCCCCeEEEEEeeecCCCCCeEEEEeCCeeCCCCCCc
Q psy15667 163 KVTAIDGEGLSIKCPVAGYP-IEEVHWEKVPPKIESFAFPFDGLPEGARTRVICGVTHGDPPLTIRWLKDGKPLSPRFPV 241 (286)
Q Consensus 163 ~~~~~~g~~~~l~c~~~~~p-~~~v~w~~~~~~~~~~~~~~~~~~~g~~~~l~c~~~~~~p~~~~~W~~~g~~~~~~~~~ 241 (286)
.+.+.+|++++|.|.+.+.. ...+.|.+..+. ....+.. +..+........++
T Consensus 9 ~~~v~~G~~v~L~C~~~~~~~~~~~~Wyrq~~g--------------~~~~~l~------------~~~~~~~~~~~~r~ 62 (106)
T cd04980 9 TLSVSPGESATISCKASQSVSSNYLAWYQQKPG--------------QAPKLLI------------YGASTLASGTPSRF 62 (106)
T ss_pred cEEECCCCCEEEEEEECCCCCCCcEEEEEECCC--------------CCcEEEE------------ECccccCCCCCCCE
Confidence 45677899999999987655 567889874321 1111111 11110000001122
Q ss_pred eeeecCCCeeeEEEcccCCCCCeEEEEEEEec
Q psy15667 242 NVSDLDSFSSLLSINSVSAAHSGEYTCVASNT 273 (286)
Q Consensus 242 ~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~N~ 273 (286)
... .......|.|.+++.+|+|.|.|.+.+.
T Consensus 63 ~~~-~~~~~~~L~I~~~~~~Dsg~Y~Ca~~~~ 93 (106)
T cd04980 63 SGS-GSGTDFTLTISRVEPEDAAVYYCQQYGT 93 (106)
T ss_pred EEe-ccCCEEEEEECCCChHHCEEEEEEEeCC
Confidence 221 1123457999999999999999999764
No 272
>cd07706 IgV_TCR_delta Immunoglobulin (Ig) variable (V) domain of T-cell receptor (TCR) delta chain. IgV_TCR_delta: immunoglobulin (Ig) variable (V) domain of the delta chain of gamma/delta T-cell receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are heterodimers consisting of alpha and beta chains or gamma and delta chains. Each chain contains a variable (V) and a constant (C) region. The majority of T cells contain alpha/beta TCRs but a small subset contain gamma/delta TCRs. Alpha/beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. Gamma/delta TCRs recognize intact protein antigens; they recognize protein antigens directly and without antigen processing, and MHC independently of the bound peptide. Gamma/delta T cells can also be stimulated by non-peptide antigens such as small phosphate- or amine-containing compounds. The variable domain of gamma/delta TCRs is responsible for antigen recognition and is
Probab=98.32 E-value=4.6e-06 Score=60.06 Aligned_cols=77 Identities=23% Similarity=0.347 Sum_probs=52.1
Q ss_pred eEeccccccccCCCcEEEEEEeecC-CCCeeEEeeC--CEE---c---------CCCCeeEeceEEecccceeEEEEEcc
Q psy15667 5 LTYSFIEQTLQPGPAVSLKCIASGN-PTPDIGWTLD--GFE---L---------PTNNRFVIGQFVSGHGDVISHVNISH 69 (286)
Q Consensus 5 ~~~~~~~~~~~~G~~~~l~C~~~g~-p~p~v~W~~~--~~~---l---------~~~~~~~~~~~~~~~~~~~~~l~I~~ 69 (286)
+...+..+.+.+|++|+|.|..... ....+.|++. +.. | ..+.|+.+... ......+|+|.+
T Consensus 2 v~q~~~~v~~~~G~~v~L~C~~~~~~~~~~v~Wyrq~~~~~~~~l~~~~~~~~~~~~~R~~~~~~---~~~~~~sL~I~~ 78 (116)
T cd07706 2 VTQAQPDVSVQVGEEVTLNCRYETSWTNYYIFWYKQLPSGEMTFLIRQKSIYGNATKGRYSVNFQ---KAQKSISLTISA 78 (116)
T ss_pred cEEeCCceEEcCCCCEEEEEEEeCCCCceEEEEEEECCCCceEEEEEecCccCCccCCeEEEEEe---ccCCEEEEEECC
Confidence 3456677889999999999987754 4567999973 211 1 11234433210 112234699999
Q ss_pred cccCCCeEEEEEEEc
Q psy15667 70 VTVEDGGEYACVAEN 84 (286)
Q Consensus 70 ~~~~D~G~Y~C~a~n 84 (286)
++.+|+|.|.|.+..
T Consensus 79 ~~~~Dsg~Y~C~~~~ 93 (116)
T cd07706 79 LQLEDSAKYFCALST 93 (116)
T ss_pred CCHHHCEEEEEEEEC
Confidence 999999999998875
No 273
>cd05713 Ig_MOG_like Immunoglobulin (Ig)-like domain of myelin oligodendrocyte glycoprotein (MOG). Ig_MOG_like: immunoglobulin (Ig)-like domain of myelin oligodendrocyte glycoprotein (MOG). MOG, a minor component of the myelin sheath, is an important CNS-specific autoantigen, linked to the pathogenesis of multiple sclerosis (MS) and experimental autoimmune encephalomyelitis (EAE). It is a transmembrane protein having an extracellular Ig domain. MOG is expressed in the CNS on the outermost lamellae of the myelin sheath, and on the surface of oligodendrocytes, and may participate in the completion, compaction, and/or maintenance of myelin. This group also includes butyrophilin (BTN). BTN is the most abundant protein in bovine milk-fat globule membrane (MFGM).
Probab=98.32 E-value=3.3e-06 Score=59.05 Aligned_cols=70 Identities=19% Similarity=0.303 Sum_probs=42.0
Q ss_pred CCcEEEEEEeecCC---CCeeEEeeCCE--Ec--CCC-------------CeeEeceEEecccceeEEEEEcccccCCCe
Q psy15667 17 GPAVSLKCIASGNP---TPDIGWTLDGF--EL--PTN-------------NRFVIGQFVSGHGDVISHVNISHVTVEDGG 76 (286)
Q Consensus 17 G~~~~l~C~~~g~p---~p~v~W~~~~~--~l--~~~-------------~~~~~~~~~~~~~~~~~~l~I~~~~~~D~G 76 (286)
|++++|.|...+.. ...+.|++... .+ ..+ +|+.... ........+|.|.+++.+|+|
T Consensus 1 G~~v~L~C~~~~~~~~~~~~v~W~k~~~~~~v~~~~~~~~~~~~~~~~~~~R~~~~~--~~~~~~~~sL~I~~v~~~D~G 78 (100)
T cd05713 1 GEDAELPCHLSPKMSAEHMEVRWFRSQFSPAVHLYRDGQDQYGEQMPEYRGRTELLK--DAIAEGSVALRIHNVRASDEG 78 (100)
T ss_pred CCcEEEEeEEcCCCCCCeeEEEEEECCCceeEEEEcCCcccccccCccccceEEeec--ccccCCcEEEEEEcCChhhCE
Confidence 78999999875321 23688887541 11 010 1211100 000011246999999999999
Q ss_pred EEEEEEEcCCEE
Q psy15667 77 EYACVAENRAGT 88 (286)
Q Consensus 77 ~Y~C~a~n~~g~ 88 (286)
.|.|.+.|..+.
T Consensus 79 ~Y~C~v~~~~~~ 90 (100)
T cd05713 79 LYTCFFQSDGFY 90 (100)
T ss_pred EEEEEEecCCcE
Confidence 999999986554
No 274
>cd07705 Ig2_Necl-1 Second immunoglobulin (Ig)-like domain of nectin-like molcule-1 (Necl-1, also known as cell adhesion molecule3 (CADM3)). Ig2_Necl-1: second immunoglobulin (Ig)-like domain of nectin-like molcule-1 (Necl-1, also known as cell adhesion molecule3 (CADM3)). These nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). These have an extracellular region containing three Ig-like domains, one transmembrane region, and one cytoplasmic region. The N-terminal Ig-like domain of the extracellular region belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-1 and Necl-2 have Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-1 is specifically expressed in neural tissue and is important to the formation of synapses, axon bundles, and myel
Probab=98.32 E-value=7.8e-06 Score=55.02 Aligned_cols=64 Identities=19% Similarity=0.350 Sum_probs=44.1
Q ss_pred EEEEEeeecCCCCCeEEEEeCCeeCCCCCCceeeecCC-----CeeeEEEcccCCCCCeEEEEEEEeccc
Q psy15667 211 TRVICGVTHGDPPLTIRWLKDGKPLSPRFPVNVSDLDS-----FSSLLSINSVSAAHSGEYTCVASNTAA 275 (286)
Q Consensus 211 ~~l~c~~~~~~p~~~~~W~~~g~~~~~~~~~~~~~~~~-----~~~~L~i~~v~~~d~G~Y~C~a~N~~g 275 (286)
+.|.|.+..+.|.+.|+|+++|+.+..... .+..... ....|.|.....+|...|+|.|.+...
T Consensus 2 ~~LtC~a~g~~P~~~ItW~k~g~~l~~~~~-~~~~~~~~~t~~~~s~l~~~~~~~d~g~~~tC~v~h~~l 70 (83)
T cd07705 2 AKLRCTSSGSKPAANIKWRKGDQELEGAPT-SVLEDGNGKTFTVSSSVEFQVTREDDGAEITCSVGHESL 70 (83)
T ss_pred EEEEEEecCccCCCEeEEEECCEECCCcce-eEEECCCCCEEEEEEEEEEEecchhCCCEEEEEEECccc
Confidence 578888888888899999999998865322 1111111 123455555556788999999999864
No 275
>cd05884 Ig2_Necl-3 Second immunoglobulin (Ig)-like domain of nectin-like molecule-3 (Necl-3, also known as cell adhesion molecule 2 (CADM2)). Ig2_Necl-3: second immunoglobulin (Ig)-like domain of nectin-like molecule-3 (Necl-3, also known as cell adhesion molecule 2 (CADM2)). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). These have an extracellular region containing three Ig-like domains, one transmembrane region, and one cytoplasmic region. Necl-3 has been shown to accumulate in tissues of the central and peripheral nervous system, where it is expressed in ependymal cells and myelinated axons. It is observed at the interface between the axon shaft and the myelin sheath. Ig domains are likely to participate in ligand binding and recognition.
Probab=98.31 E-value=4.6e-06 Score=56.08 Aligned_cols=64 Identities=22% Similarity=0.392 Sum_probs=41.2
Q ss_pred EEEEEEeec-CCCCeeEEeeCCEEcCCCCeeEeceEEecccc---eeEEEEEcccccCCCeEEEEEEEcCC
Q psy15667 20 VSLKCIASG-NPTPDIGWTLDGFELPTNNRFVIGQFVSGHGD---VISHVNISHVTVEDGGEYACVAENRA 86 (286)
Q Consensus 20 ~~l~C~~~g-~p~p~v~W~~~~~~l~~~~~~~~~~~~~~~~~---~~~~l~I~~~~~~D~G~Y~C~a~n~~ 86 (286)
++|.|.+.| .|...++|+|||..+........ . ...++ ..+.|.|..-..+|...|+|++.+..
T Consensus 2 ~~LtC~a~gf~P~~~itW~kng~~l~~~~~~~~--~-~~~~~t~~~~s~L~~~~~~~d~g~~ytC~v~h~~ 69 (83)
T cd05884 2 MQLTCKTSGSKPAADIRWFKNDKEIKDVKYLKE--E-DANRKTFTVSSTLDFRVDRSDDGVAIICRVDHES 69 (83)
T ss_pred EEEEEEeCCccCCCEEEEEECCEECcCceeeEe--e-CCCCCEEEEEEEEEEEcccccCCCEEEEEEechh
Confidence 689999987 68889999999999854322111 0 11111 22345555444555669999998853
No 276
>cd07705 Ig2_Necl-1 Second immunoglobulin (Ig)-like domain of nectin-like molcule-1 (Necl-1, also known as cell adhesion molecule3 (CADM3)). Ig2_Necl-1: second immunoglobulin (Ig)-like domain of nectin-like molcule-1 (Necl-1, also known as cell adhesion molecule3 (CADM3)). These nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). These have an extracellular region containing three Ig-like domains, one transmembrane region, and one cytoplasmic region. The N-terminal Ig-like domain of the extracellular region belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-1 and Necl-2 have Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-1 is specifically expressed in neural tissue and is important to the formation of synapses, axon bundles, and myel
Probab=98.30 E-value=5.3e-06 Score=55.83 Aligned_cols=64 Identities=27% Similarity=0.543 Sum_probs=41.8
Q ss_pred EEEEEEeec-CCCCeeEEeeCCEEcCCCCeeEeceEEecccce---eEEEEEcccccCCCeEEEEEEEcCC
Q psy15667 20 VSLKCIASG-NPTPDIGWTLDGFELPTNNRFVIGQFVSGHGDV---ISHVNISHVTVEDGGEYACVAENRA 86 (286)
Q Consensus 20 ~~l~C~~~g-~p~p~v~W~~~~~~l~~~~~~~~~~~~~~~~~~---~~~l~I~~~~~~D~G~Y~C~a~n~~ 86 (286)
++|.|.+.| .|.+.|+|++||++|...... . .....+.. ...|.|.-...+|...|+|+|.+..
T Consensus 2 ~~LtC~a~g~~P~~~ItW~k~g~~l~~~~~~-~--~~~~~~~t~~~~s~l~~~~~~~d~g~~~tC~v~h~~ 69 (83)
T cd07705 2 AKLRCTSSGSKPAANIKWRKGDQELEGAPTS-V--LEDGNGKTFTVSSSVEFQVTREDDGAEITCSVGHES 69 (83)
T ss_pred EEEEEEecCccCCCEeEEEECCEECCCccee-E--EECCCCCEEEEEEEEEEEecchhCCCEEEEEEECcc
Confidence 689999987 599999999999998654321 1 11112222 1335454444556679999999864
No 277
>cd05877 Ig_LP_like Immunoglobulin (Ig)-like domain of human cartilage link protein (LP). Ig_LP_like: immunoglobulin (Ig)-like domain similar to that that found in human cartilage link protein (LP). In cartilage, chondroitin-keratan sulfate proteoglycan (CSPG), aggrecan, forms cartilage link protein stabilized aggregates with hyaluronan (HA). These aggregates contribute to the tissue's load bearing properties. Aggregates having other CSPGs substituting for aggrecan may contribute to the structural integrity of many different tissues. Members of the vertebrate HPLN (hyaluronan/HA and proteoglycan binding link) protein family are physically linked adjacent to CSPG genes.
Probab=98.30 E-value=4e-06 Score=59.32 Aligned_cols=69 Identities=23% Similarity=0.377 Sum_probs=44.3
Q ss_pred CCCcEEEEEEeecCC------CCeeEEeeCCE------E-c-CC----------CCeeEeceEEecccceeEEEEEcccc
Q psy15667 16 PGPAVSLKCIASGNP------TPDIGWTLDGF------E-L-PT----------NNRFVIGQFVSGHGDVISHVNISHVT 71 (286)
Q Consensus 16 ~G~~~~l~C~~~g~p------~p~v~W~~~~~------~-l-~~----------~~~~~~~~~~~~~~~~~~~l~I~~~~ 71 (286)
.|++|+|.|.....| ...|.|+|... . + .. .+|+... .......+|.|.+++
T Consensus 1 ~G~~vtL~C~~~~~~~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~----~~~~~~~sL~I~~v~ 76 (106)
T cd05877 1 RGGNVTLPCRYHYEPELSAPRKIRVKWTKLESDYLKEEDVLVAIGTRHKSYGSYQGRVFLR----RAHDLDASLVITDLR 76 (106)
T ss_pred CCCcEEEEeEeECCCcCCCCccceEEEEEecCCCCeeEEEEEEcCcEEEeccCccCcEEec----CCCCCcEEEEEccCC
Confidence 489999999877653 35799998631 0 1 00 1122110 000112369999999
Q ss_pred cCCCeEEEEEEEcCCEE
Q psy15667 72 VEDGGEYACVAENRAGT 88 (286)
Q Consensus 72 ~~D~G~Y~C~a~n~~g~ 88 (286)
.+|+|.|.|.+.+..+.
T Consensus 77 ~~DsG~Y~C~v~~~~~~ 93 (106)
T cd05877 77 LEDYGRYRCEVIDGLED 93 (106)
T ss_pred hHHCEEEEEEEEecccc
Confidence 99999999999875543
No 278
>cd05741 Ig_CEACAM_D1_like First immunoglobulin (Ig)-like domain of carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM) and similar proteins. Ig_CEACAM_D1_like : immunoglobulin (IG)-like domain 1 in carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM) protein subfamily-like. The CEA family is a group of anchored or secreted glycoproteins, expressed by epithelial cells, leukocytes, endothelial cells and placenta. The CEA family is divided into the CEACAM and pregnancy-specific glycoprotein (PSG) subfamilies. This group represents the CEACAM subfamily. CEACAM1 has many important cellular functions, it is a cell adhesion molecule, and a signaling molecule that regulates the growth of tumor cells, it is an angiogenic factor, and is a receptor for bacterial and viral pathogens, including mouse hepatitis virus (MHV). In mice, four isoforms of CEACAM1 generated by alternative splicing have either two [D1, D4] or four [D1-D4] Ig-like domains on the cell surf
Probab=98.30 E-value=3.9e-06 Score=57.67 Aligned_cols=35 Identities=23% Similarity=0.236 Sum_probs=26.7
Q ss_pred eeeEEEcccCCCCCeEEEEEEEeccc-ceeeEEEEE
Q psy15667 250 SSLLSINSVSAAHSGEYTCVASNTAA-QARYSSKLQ 284 (286)
Q Consensus 250 ~~~L~i~~v~~~d~G~Y~C~a~N~~g-~~~~~~~L~ 284 (286)
+..|.|.+++.+|+|.|+|...+..| .....+.|.
T Consensus 56 ~~sL~I~~l~~~DsG~Y~c~v~~~~~~~~~~~~~l~ 91 (92)
T cd05741 56 NGSLLIQNLTKEDSGTYTLQIISTNGVTENAKFFLR 91 (92)
T ss_pred CceEEEccCCchhcEEEEEEEEcCCCcEEEEEEEEE
Confidence 36899999999999999999998864 333334343
No 279
>cd05771 IgC_Tapasin_R Tapasin-R immunoglobulin-like domain. IgC_Tapasin_R: Immunoglobulin-like domain on Tapasin-R. Tapasin is a V-C1 (variable-constant) immunoglobulin superfamily molecule present in the endoplasmic reticulum (ER), where it links MHC class I molecules to the transporter associated with antigen processing (TAP). Tapasin-R is a tapasin-related protein that contains similar structural motifs to Tapasin, with some marked differences, especially in the V domain, transmembrane and cytoplasmic regions. The majority of Tapasin-R is located within the ER; however, there may be some expression of Tapasin-R at the cell surface. Tapasin-R lacks an obvious ER retention signal.
Probab=98.27 E-value=1.3e-05 Score=59.74 Aligned_cols=85 Identities=20% Similarity=0.312 Sum_probs=52.2
Q ss_pred CCeeEeccccccccCCCcEEEEEEeecC-CC-CeeEEeeCCEEcCC-----CCeeEeceEEecccc--eeEEEEEccccc
Q psy15667 2 PPILTYSFIEQTLQPGPAVSLKCIASGN-PT-PDIGWTLDGFELPT-----NNRFVIGQFVSGHGD--VISHVNISHVTV 72 (286)
Q Consensus 2 ~p~~~~~~~~~~~~~G~~~~l~C~~~g~-p~-p~v~W~~~~~~l~~-----~~~~~~~~~~~~~~~--~~~~l~I~~~~~ 72 (286)
||.+...+......+|+.++|.|.+.|. |+ ++|.|+++|..... +...........++. ..+.|.|..-..
T Consensus 38 ~P~v~~~~~~~~~~~~~~~~L~C~a~g~~P~~~~i~W~~~g~~~~~~~~~~~~~~~~~~~~~~dgt~~~~s~L~v~~~~~ 117 (139)
T cd05771 38 PPRVRLSLEKLVSMIEEPQTLICHIAGYYPLDVQVEWTREPPGDSPPPVSLSNVSFSSHRQHQDGTYSLSSHLTLEPGTE 117 (139)
T ss_pred CCceEEeCCCceeecCCcEEEEEEECCCCCCCeEEEEEECCCCCccceeccCCeEecceEeCCCCCEEEEEEEEecCCcc
Confidence 6788776665555589999999999996 54 48999999865221 111100000111222 124466665555
Q ss_pred CCCeEEEEEEEcCC
Q psy15667 73 EDGGEYACVAENRA 86 (286)
Q Consensus 73 ~D~G~Y~C~a~n~~ 86 (286)
++.+.|+|.+....
T Consensus 118 ~~g~~ytC~V~H~~ 131 (139)
T cd05771 118 DAGATYTCRVSHVS 131 (139)
T ss_pred CCCCEEEEEEEcCC
Confidence 55679999997753
No 280
>cd05755 Ig2_ICAM-1_like Second immunoglobulin (Ig)-like domain of intercellular cell adhesion molecule-1 (ICAM-1, CD54) and similar proteins. Ig2_ ICAM-1_like: domain similar to the second immunoglobulin (Ig)-like domain of intercellular cell adhesion molecule-1 (ICAM-1, CD54). During the inflammation process, these molecules recruit leukocytes onto the vascular endothelium before extravasation to the injured tissues. ICAM-1 may be involved in organ targeted tumor metastasis. The interaction of ICAM-1 with leukocyte function-associated antigen-1 (LFA-1) plays a part in leukocyte-endothelial cell recognition. This group also contains ICAM-2, which also interacts with LFA-1. Transmigration of immature dendritic cells across resting endothelium is dependent on the interaction of ICAM-2 with, yet unidentified, ligand(s) on the dendritic cells. ICAM-1 has five Ig-like domains and ICAM-2 has two. ICAM-1 may also act as host receptor for viruses and parasites.
Probab=98.27 E-value=5.3e-06 Score=57.51 Aligned_cols=73 Identities=16% Similarity=0.236 Sum_probs=50.5
Q ss_pred CCCCCCCeEEEEEeeecCCCCCe--EEEEeCCeeCCCCCCcee-eecCCCeeeEEEcccCCCCCe-EEEEEEEecccc
Q psy15667 203 DGLPEGARTRVICGVTHGDPPLT--IRWLKDGKPLSPRFPVNV-SDLDSFSSLLSINSVSAAHSG-EYTCVASNTAAQ 276 (286)
Q Consensus 203 ~~~~~g~~~~l~c~~~~~~p~~~--~~W~~~g~~~~~~~~~~~-~~~~~~~~~L~i~~v~~~d~G-~Y~C~a~N~~g~ 276 (286)
..+.+|+.+.|.|.+..+.|.+. |.|+|++..+........ ........+|.+. +..+|.| .|+|.|.+.++.
T Consensus 11 ~~~~eG~~~tL~C~v~g~~P~a~L~i~W~rG~~~l~~~~~~~~~~~~~~~~stlt~~-~~r~D~g~~~sC~A~l~l~~ 87 (100)
T cd05755 11 SWQPVGKNYTLQCDVPGVAPRQNLTVVLLRGNETLSRQPFGDNTKSPVNAPATITIT-VDREDHGANFSCETELDLRP 87 (100)
T ss_pred CcccCCCcEEEEEEEcCcCCCCcEEEEEeeCCEEcccceeccccCCCceeEEEEEEe-cchhhCCcEEEEEEEeccCc
Confidence 34679999999999999999987 699999998854321110 0011224566665 4455555 999999998764
No 281
>cd07698 IgC_MHC_I_alpha3 Class I major histocompatibility complex (MHC) alpha chain immunoglobulin domain. IgC_MHC_I_alpha3; Immunoglobulin (Ig) domain of major histocompatibility complex (MHC) class I alpha chain. Class I MHC proteins bind antigenic peptide fragments and present them to CD8+ T lymphocytes. Class I molecules consist of a transmembrane alpha chain and a small chain called the beta2 microglobulin. The alpha chain contains three extracellular domains, two of which fold together to form the peptide-binding cleft (alpha1 and alpha2), and one which has an Ig fold (alpha3). Peptide binding to class I molecules occurs in the endoplasmic reticulum (ER) and involves both chaperones and dedicated factors to assist in peptide loading. Class I MHC molecules are expressed on most nucleated cells.
Probab=98.27 E-value=1.4e-05 Score=55.07 Aligned_cols=79 Identities=20% Similarity=0.353 Sum_probs=47.0
Q ss_pred CCeeEeccccccccCCCcEEEEEEeecC-CCC-eeEEeeCCEEcCCCCeeEeceEEecccceeEEEEEcccccCCCeEEE
Q psy15667 2 PPILTYSFIEQTLQPGPAVSLKCIASGN-PTP-DIGWTLDGFELPTNNRFVIGQFVSGHGDVISHVNISHVTVEDGGEYA 79 (286)
Q Consensus 2 ~p~~~~~~~~~~~~~G~~~~l~C~~~g~-p~p-~v~W~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~I~~~~~~D~G~Y~ 79 (286)
||.+........ |+.++|.|.+.|. |.. .++|.++|+.+....... ......++.......-.+...|.+.|+
T Consensus 2 pP~v~v~~~~~~---~~~~~L~C~a~gF~P~~i~v~W~~~g~~~~~~~~~~--~~~~~~d~ty~~~s~l~v~~~~~~~yt 76 (93)
T cd07698 2 PPEVRVTRKRAP---DGSLTLSCHATGFYPRDIEVTWLRDGEDSVDDVESG--EILPNGDGTYQLWVTLEVPPEDKARYS 76 (93)
T ss_pred CCEEEEEecCCC---CCcEEEEEEEEEEeCCCcEEEEEECCEECccccccc--ceEECCCCeEEEEEEEEECCCCCCEEE
Confidence 788876665544 7899999999995 544 899999996443221110 011111222212222333444788999
Q ss_pred EEEEcC
Q psy15667 80 CVAENR 85 (286)
Q Consensus 80 C~a~n~ 85 (286)
|.+...
T Consensus 77 C~V~H~ 82 (93)
T cd07698 77 CRVEHS 82 (93)
T ss_pred EEEEeC
Confidence 998764
No 282
>cd05900 Ig_Aggrecan Immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), aggrecan. Ig_Aggrecan: immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), aggrecan. These aggregates contribute to the tissue's load bearing properties. In CSPGs, the Ig-like domain is followed by hyaluronan (HA)-binding tandem repeats, and a C-terminal region with epidermal growth factor-like, lectin-like, and complement regulatory protein-like domains. Separating these N- and C-terminal regions is a nonhomologous glycosaminoglycan attachment region. In cartilage, aggrecan forms cartilage link protein stabilized aggregates with HA. These aggregates contribute to the tissue's load bearing properties. Aggrecan has a wide distribution in connective tissue and extracellular matrices. Members of the vertebrate HPLN (hyaluronan/HA and proteoglycan binding link) protein family are physically linked adjacent to CSPG genes.
Probab=98.20 E-value=8.2e-06 Score=58.10 Aligned_cols=68 Identities=19% Similarity=0.399 Sum_probs=42.1
Q ss_pred CCCcEEEEEEeecCC------------CCeeEEeeC--CE--E-c-CCC----------CeeEeceEEecccceeEEEEE
Q psy15667 16 PGPAVSLKCIASGNP------------TPDIGWTLD--GF--E-L-PTN----------NRFVIGQFVSGHGDVISHVNI 67 (286)
Q Consensus 16 ~G~~~~l~C~~~g~p------------~p~v~W~~~--~~--~-l-~~~----------~~~~~~~~~~~~~~~~~~l~I 67 (286)
.|++|+|.|.....+ .+.|.|+|. |. . + ... +|+.........+ ..+|+|
T Consensus 1 ~G~~VtLpC~~~~~~~~~~~~~~~~~~~~~I~W~k~~~g~~~~ii~~~~~~~~~~~~f~~R~sl~~~~~~~~--~asL~I 78 (112)
T cd05900 1 LGSSLLIPCYFQDPIAKDPGAPTVAPLSPRIKWSFISKEKESVLLVATEGKVRVNTEYLDRVSLPNYPAIPS--DATLEI 78 (112)
T ss_pred CCCcEEEeeEEeCCcCccccccccCCCCCEEEEEEecCCCccEEEEEECCeEEECccccCeEEecccCCCCC--CcEEEE
Confidence 489999999876532 468999984 21 1 1 011 1221100000112 246999
Q ss_pred cccccCCCeEEEEEEEcC
Q psy15667 68 SHVTVEDGGEYACVAENR 85 (286)
Q Consensus 68 ~~~~~~D~G~Y~C~a~n~ 85 (286)
.+++.+|+|.|.|.+...
T Consensus 79 ~nl~~sDsG~Y~C~V~~g 96 (112)
T cd05900 79 TELRSNDSGTYRCEVMHG 96 (112)
T ss_pred eecccccCEEEEEEEecC
Confidence 999999999999998753
No 283
>cd05901 Ig_Versican Immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), versican. Ig_Versican: immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), versican. In CSPGs, the Ig-like domain is followed by hyaluronan (HA)-binding tandem repeats, and a C-terminal region with epidermal growth factor-like, lectin-like, and complement regulatory protein-like domains. Separating these N- and C-terminal regions is a nonhomologous glycosaminoglycan attachment region. In cartilage, the CSPG aggrecan (not included in this group) forms cartilage link protein stabilized aggregates with HA. These aggregates contribute to the tissue's load bearing properties. Like aggrecan, versican has a wide distribution in connective tissue and extracellular matrices. Aggregates having other CSPGs substituting for aggrecan may contribute to the structural integrity of many different tissues. Members of the vertebrate HPLN (hyaluronan/HA
Probab=98.20 E-value=4.8e-05 Score=54.24 Aligned_cols=38 Identities=21% Similarity=0.330 Sum_probs=34.2
Q ss_pred CeeeEEEcccCCCCCeEEEEEEEecccceeeEEEEEEC
Q psy15667 249 FSSLLSINSVSAAHSGEYTCVASNTAAQARYSSKLQVK 286 (286)
Q Consensus 249 ~~~~L~i~~v~~~d~G~Y~C~a~N~~g~~~~~~~L~V~ 286 (286)
...+|.|.+++.+|+|.|.|...+.....+.+..|.|+
T Consensus 77 g~asL~i~~v~~sD~G~Y~C~V~~g~~~~~~~v~L~V~ 114 (117)
T cd05901 77 GDASLTIVKLRASDAGVYRCEVMHGIEDTQDTVSLDVS 114 (117)
T ss_pred CceEEEEcccccccCEEEEEEEEECCcccEEEEEEEEE
Confidence 46789999999999999999999999888888888874
No 284
>cd05770 IgC_beta2m Class I major histocompatibility complex (MHC) beta2-microglobulin. IgC_beta2m: Immunoglobulin-like domain in beta2-Microglobulin (beta2m). Beta2m is the non-covalently bound light chain of the human class I major histocompatibility complex (MHC-I). Beta2m is structured as a beta-sandwich domain composed of two facing beta-sheets (four stranded and three stranded), that is typical of the C-type immunoglobulin superfamily. This structure is stabilized by an intramolecular disulfide bridge connecting two Cys residues in the facing beta -sheets. In vivo, MHC-I continuously exposes beta2m on the cell surface, where it may be released to plasmatic fluids, transported to the kidneys, degraded and then excreted.
Probab=98.20 E-value=3.9e-05 Score=52.61 Aligned_cols=80 Identities=19% Similarity=0.299 Sum_probs=48.1
Q ss_pred CCeeEeccccccccCCCcEEEEEEeecC-C-CCeeEEeeCCEEcCCCCeeEeceEEecccceeEEEEEcccccCCCeEEE
Q psy15667 2 PPILTYSFIEQTLQPGPAVSLKCIASGN-P-TPDIGWTLDGFELPTNNRFVIGQFVSGHGDVISHVNISHVTVEDGGEYA 79 (286)
Q Consensus 2 ~p~~~~~~~~~~~~~G~~~~l~C~~~g~-p-~p~v~W~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~I~~~~~~D~G~Y~ 79 (286)
||.+.+...+ .+..|+..+|.|.+.|. | .-.|+|.+||+.+. +.. ........+.......--.+...+...|+
T Consensus 1 pP~v~v~~~~-~~~~g~~~~L~C~a~gFyP~~i~v~W~~dg~~~~-~~~--~~~~~p~~d~tyq~~s~l~~~~~~~~~ys 76 (93)
T cd05770 1 TPKVQVYSRF-PAENGKPNVLNCYVTGFHPPDIEIRLLKNGVKIP-KVE--QSDLSFSKDWTFYLLKSTEFTPTKGDEYA 76 (93)
T ss_pred CCEEEEEecC-CCcCCCceEEEEEEEEEeCCCCEEEEEECCEECC-CcE--ECcEEECCCCCEEEEEEEEECCCCCCeEE
Confidence 6777754433 45668888999999994 3 34779999999986 322 11221222222211222234556777999
Q ss_pred EEEEcC
Q psy15667 80 CVAENR 85 (286)
Q Consensus 80 C~a~n~ 85 (286)
|++.-.
T Consensus 77 C~V~H~ 82 (93)
T cd05770 77 CRVRHN 82 (93)
T ss_pred EEEEEC
Confidence 988753
No 285
>PHA02987 Ig domain OX-2-like protein; Provisional
Probab=98.19 E-value=4.5e-06 Score=63.56 Aligned_cols=70 Identities=19% Similarity=0.338 Sum_probs=47.5
Q ss_pred ccccccCCCcEEEEEEee-cCCCCeeEEeeCCEEc----CCCC--------eeEeceEEecccceeEEEEEcccccCCCe
Q psy15667 10 IEQTLQPGPAVSLKCIAS-GNPTPDIGWTLDGFEL----PTNN--------RFVIGQFVSGHGDVISHVNISHVTVEDGG 76 (286)
Q Consensus 10 ~~~~~~~G~~~~l~C~~~-g~p~p~v~W~~~~~~l----~~~~--------~~~~~~~~~~~~~~~~~l~I~~~~~~D~G 76 (286)
-..++.+|++++|.|... +...++|.|.|+...+ +.+. |+.. .........|+|.+++.+|+|
T Consensus 23 ~~v~V~ege~VtLsCs~t~s~~~~qVtWkK~~~~IatY~~~g~~i~~~Fk~Rve~----mS~s~~~StItIknVt~sDeG 98 (189)
T PHA02987 23 VKITVSEHVNVKISCNKTSSFNSILITWKKNNKTIAGYGPCGPVIVDKFKNKIEY----LSKSFNESTILIKNVSLKDNG 98 (189)
T ss_pred EEEEEcCCCCEEEEEecCCCCccceEEEEEcCCCEEEEecCCcEEChhhcCeEEE----eccCCCcceEEEEeCChhhCe
Confidence 356789999999999874 6567889999874322 1111 2210 001112246899999999999
Q ss_pred EEEEEEE
Q psy15667 77 EYACVAE 83 (286)
Q Consensus 77 ~Y~C~a~ 83 (286)
.|.|...
T Consensus 99 cY~C~F~ 105 (189)
T PHA02987 99 CYTCIFN 105 (189)
T ss_pred EEEEEEE
Confidence 9999864
No 286
>cd07700 IgV_CD8_beta Immunoglobulin (Ig) like domain of CD8 beta chain. IgV_CD8_beta: immunoglobulin (Ig)-like domain in CD8 beta. The CD8 glycoprotein plays an essential role in the control of T-cell selection, maturation and the T-cell receptor (TCR)-mediated response to peptide antigen. CD8 is comprised of alpha and beta subunits and is expressed as either an alpha/alpha or alpha/beta dimer. Both dimeric isoforms can serve as a coreceptor for T cell activation and differentiation, however they have distinct physiological roles, different cellular distributions, unique binding partners etc. Each CD8 subunit is comprised of an extracellular domain containing a V-type Ig-like domain, a single pass transmembrane portion and a short intracellular domain.
Probab=98.19 E-value=9e-06 Score=57.64 Aligned_cols=68 Identities=25% Similarity=0.375 Sum_probs=44.3
Q ss_pred cccCCCcEEEEEEeecC-CCCeeEEeeCCEE---------c--CC-----------CCeeEeceEEecccceeEEEEEcc
Q psy15667 13 TLQPGPAVSLKCIASGN-PTPDIGWTLDGFE---------L--PT-----------NNRFVIGQFVSGHGDVISHVNISH 69 (286)
Q Consensus 13 ~~~~G~~~~l~C~~~g~-p~p~v~W~~~~~~---------l--~~-----------~~~~~~~~~~~~~~~~~~~l~I~~ 69 (286)
++++|++++|.|...+. ....+.|++.... + .. ..++.... ........|+|.+
T Consensus 2 ~v~~G~~vtL~C~~~~~~~~~~~~Wyrq~~g~~~~~~~~l~~~~~~~~~~~~~~~~~~rf~~~~---~~~~~~~~L~I~~ 78 (107)
T cd07700 2 LVQTNNTVKLSCEAKGISENTRIYWLRWRQAPKDSHFEFLALWSPLGGATYGEEVSQEKFSIRV---TSDSSRYRLHINR 78 (107)
T ss_pred EEcCCCCEEEEEEEecCCCCCeEEEEEECCCCCCCccEEEEEEcCCCCeEEccccccCcEEEEE---ECCCCEEEEEECC
Confidence 57899999999998764 3457999974221 0 00 12222110 1112234699999
Q ss_pred cccCCCeEEEEEEE
Q psy15667 70 VTVEDGGEYACVAE 83 (286)
Q Consensus 70 ~~~~D~G~Y~C~a~ 83 (286)
++.+|+|.|.|...
T Consensus 79 ~~~~Dsg~YyCa~~ 92 (107)
T cd07700 79 VKPEDSGTYFCMTV 92 (107)
T ss_pred CCHHHCEEEEEeEc
Confidence 99999999999864
No 287
>cd04984 IgV_L_lambda Immunoglobulin (Ig) lambda light chain variable (V) domain. IgV_L_lambda: Immunoglobulin (Ig) light chain, lambda type, variable (V) domain. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. In Ig, each chain is composed of one variable domain (IgV) and one or more constant domains (IgC); these names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. There are five types of heavy chains (alpha, gamma, delta, epsilon, and mu), which determine the type of immunoglobulin: IgA, IgG, IgD, IgE, and IgM, respectively. In higher vertebrates, there are two types of light chain, designated kappa and lambda, which seem to be functionally identical, and can associate with any of the heavy chains.
Probab=98.17 E-value=2.3e-05 Score=54.60 Aligned_cols=81 Identities=19% Similarity=0.235 Sum_probs=46.9
Q ss_pred EecCCCEEEEeeEeee--cCCeEEEEEcCCcccccccccCCCCCCCeEEEEEeeecCCCCCeEEEEeCCeeCCCCCCcee
Q psy15667 166 AIDGEGLSIKCPVAGY--PIEEVHWEKVPPKIESFAFPFDGLPEGARTRVICGVTHGDPPLTIRWLKDGKPLSPRFPVNV 243 (286)
Q Consensus 166 ~~~g~~~~l~c~~~~~--p~~~v~w~~~~~~~~~~~~~~~~~~~g~~~~l~c~~~~~~p~~~~~W~~~g~~~~~~~~~~~ 243 (286)
+.+|++++|.|...+. ....+.|.+..+.-. |..-+.+..+.. .....++..
T Consensus 3 v~~G~~v~l~C~~~~~~~~~~~i~Wy~q~~g~~-------------------------~~~l~~~~~~~~-~~~~~rf~~ 56 (98)
T cd04984 3 VSPGETVTITCTGSSGNISGNYVNWYQQKPGSA-------------------------PRYLIYEDSDRP-SGIPDRFSG 56 (98)
T ss_pred cCCCCCEEEEEEEcCCCcCCCCEEEEEECCCCC-------------------------ccEEEEeccccC-CCCCCCEEE
Confidence 4579999999988764 456788987442210 111111111100 000112222
Q ss_pred eecCCCeeeEEEcccCCCCCeEEEEEEEec
Q psy15667 244 SDLDSFSSLLSINSVSAAHSGEYTCVASNT 273 (286)
Q Consensus 244 ~~~~~~~~~L~i~~v~~~d~G~Y~C~a~N~ 273 (286)
.. ......|.|.+++++|+|.|.|.+.+.
T Consensus 57 ~~-~~~~~~L~I~~~~~~Dsg~Y~C~~~~~ 85 (98)
T cd04984 57 SK-SGNTASLTISGAQTEDEADYYCQVWDS 85 (98)
T ss_pred Ec-cCCEEEEEECCCChhhCEEEEEEEccC
Confidence 21 223557999999999999999998764
No 288
>cd05889 Ig1_DNAM-1_like First immunoglobulin (Ig) domain of DNAX accessory molecule 1 (DNAM-1, also known as CD226) and similar proteins. Ig1_DNAM-1_like: domain similar to the first immunoglobulin (Ig) domain of DNAX accessory molecule 1 (DNAM-1, also known as CD226). DNAM-1 is a transmembrane protein having two Ig-like domains. It is an adhesion molecule which plays a part in tumor-directed cytotoxicity and adhesion in natural killer (NK) cells and T lymphocytes. It has been shown to regulate the NK cell killing of several tumor types, including myeloma cells and ovarian carcinoma cells. DNAM-1 interacts specifically with poliovirus receptor (PVR; CD155) and nectin -2 (CD211), other members of the Ig superfamily. DNAM-1 is expressed in most peripheral T cells, NK cells, monocytes and a subset of B lymphocytes.
Probab=98.16 E-value=2.7e-05 Score=53.72 Aligned_cols=34 Identities=18% Similarity=0.230 Sum_probs=27.9
Q ss_pred eeeEEEcccCCCCCeEEEEEEEec-ccceeeEEEE
Q psy15667 250 SSLLSINSVSAAHSGEYTCVASNT-AAQARYSSKL 283 (286)
Q Consensus 250 ~~~L~i~~v~~~d~G~Y~C~a~N~-~g~~~~~~~L 283 (286)
..+|.|.+++.+|+|.|+|...+. .|..+....|
T Consensus 59 d~sI~i~nvt~~D~G~Y~C~~~t~P~g~~~~~i~~ 93 (96)
T cd05889 59 DMSLSFNNATEEDVGLYCCSLVTYPQGSWEKVIEV 93 (96)
T ss_pred ccEEEEcCCCcccCEEEEEEEEeCCCCCeEEEEEE
Confidence 468999999999999999998874 6776666554
No 289
>PHA02987 Ig domain OX-2-like protein; Provisional
Probab=98.16 E-value=2.1e-05 Score=60.00 Aligned_cols=92 Identities=18% Similarity=0.250 Sum_probs=55.9
Q ss_pred eEEecCCCEEEEeeEe-eecCCeEEEEEcCCcccccccccCCCCCCCeEEEEEeeecCCCCCeEEEEeCCeeCCCC--CC
Q psy15667 164 VTAIDGEGLSIKCPVA-GYPIEEVHWEKVPPKIESFAFPFDGLPEGARTRVICGVTHGDPPLTIRWLKDGKPLSPR--FP 240 (286)
Q Consensus 164 ~~~~~g~~~~l~c~~~-~~p~~~v~w~~~~~~~~~~~~~~~~~~~g~~~~l~c~~~~~~p~~~~~W~~~g~~~~~~--~~ 240 (286)
..+.+|++++|.|... +...+.|.|.+....+. .+. ..|..+.+. ++
T Consensus 25 v~V~ege~VtLsCs~t~s~~~~qVtWkK~~~~Ia---------------tY~---------------~~g~~i~~~Fk~R 74 (189)
T PHA02987 25 ITVSEHVNVKISCNKTSSFNSILITWKKNNKTIA---------------GYG---------------PCGPVIVDKFKNK 74 (189)
T ss_pred EEEcCCCCEEEEEecCCCCccceEEEEEcCCCEE---------------EEe---------------cCCcEEChhhcCe
Confidence 4567888899999874 55677788877421111 000 111122221 23
Q ss_pred ceeeecCCCeeeEEEcccCCCCCeEEEEEEEec-cc-ceeeEEEEEE
Q psy15667 241 VNVSDLDSFSSLLSINSVSAAHSGEYTCVASNT-AA-QARYSSKLQV 285 (286)
Q Consensus 241 ~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~N~-~g-~~~~~~~L~V 285 (286)
+.+.........|.|.+++.+|+|.|+|.-.-- .| ..+.++-|.|
T Consensus 75 ve~mS~s~~~StItIknVt~sDeGcY~C~F~tfp~G~~~~gt~CLtV 121 (189)
T PHA02987 75 IEYLSKSFNESTILIKNVSLKDNGCYTCIFNTLLSKNNEKGVVCLNV 121 (189)
T ss_pred EEEeccCCCcceEEEEeCChhhCeEEEEEEEecCCCCCceeEEEEEE
Confidence 333222233568999999999999999986653 45 6666666766
No 290
>PHA03376 BARF1; Provisional
Probab=98.16 E-value=0.00015 Score=55.25 Aligned_cols=74 Identities=19% Similarity=0.354 Sum_probs=39.7
Q ss_pred cceEEEccCCCCCCeeEEEEEEcCCcceeeeeeEEEEcCCCceecCCceEEe-cCCCEEEEeeEeeecCCeEEEEE
Q psy15667 116 STSLVINPVGREDRGIYQCIARRSDGDVAQGSAELQLGGLPYVRLIPKVTAI-DGEGLSIKCPVAGYPIEEVHWEK 190 (286)
Q Consensus 116 ~~~l~i~~v~~~d~G~Y~C~a~~~~g~~~~~~~~l~v~~~~~~~~~~~~~~~-~g~~~~l~c~~~~~p~~~v~w~~ 190 (286)
.-+|.|.++..+|.|.|.|............ -.|++..+-......+..-+ .-....+.|.+.|+|.|.+.|..
T Consensus 86 nvsLvI~~l~lSDdGtY~C~fQkge~~~~k~-ehLt~V~~~~Lsv~a~~~dFp~~~~~~i~C~sggfP~P~~~Wle 160 (221)
T PHA03376 86 TFFLVVTAANISHDGNYLCRMKLGETEVTKQ-EHLSVVKPLTLSVHSERSQFPDFSVLTVTCTVNAFPHPHVQWLM 160 (221)
T ss_pred eEEEEEEeeeecCCceEEEEEEcCCCceeee-eeeeeeecceEEEEeccccCCCCCeeEEEEecCCcCCchheecc
Confidence 3568888999999999999888755443221 12222110000000000001 12234677887777888888865
No 291
>cd00098 IgC Immunoglobulin Constant domain. IgC: Immunoglobulin constant domain (IgC). Members of the IgC family are components of immunoglobulin, T-cell receptors, CD1 cell surface glycoproteins, secretory glycoproteins A/C, and Major Histocompatibility Complex (MHC) class I/II molecules. In immunoglobulins, each chain is composed of one variable domain (IgV) and one or more IgC domains. These names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. The IgV domain is responsible for antigen binding, and the IgC domain is involved in oligomerization and molecular interactions.
Probab=98.15 E-value=1.2e-05 Score=55.65 Aligned_cols=70 Identities=29% Similarity=0.450 Sum_probs=44.9
Q ss_pred CCCeEEEEEeeecCCC-CCeEEEEeCCeeCCCCCC-ceeeec-C---CCeeeEEEcccCCCCCeEEEEEEEecccc
Q psy15667 207 EGARTRVICGVTHGDP-PLTIRWLKDGKPLSPRFP-VNVSDL-D---SFSSLLSINSVSAAHSGEYTCVASNTAAQ 276 (286)
Q Consensus 207 ~g~~~~l~c~~~~~~p-~~~~~W~~~g~~~~~~~~-~~~~~~-~---~~~~~L~i~~v~~~d~G~Y~C~a~N~~g~ 276 (286)
.|+.+.|.|.+....| .+.++|+++|..+..... ...... + .....|.|......|.|.|+|.+.+....
T Consensus 12 ~~~~~~L~C~a~g~~P~~~~i~W~~~g~~~~~~~~~~~~~~~~~gt~~~~s~l~v~~~~~~~~~~y~C~v~h~~~~ 87 (95)
T cd00098 12 LGGSVTLTCLATGFYPPDITVTWLKNGKELTSGVTTTPPVPNSDGTYSVSSQLTVSPSDWNSGDTYTCVVTHESLP 87 (95)
T ss_pred cCCCeEEEEEEeeEECCCcEEEEEECCEECCCceeccccccCCCCCEEEEEEEEECHHHhCCCCCEEEEEEeCCCC
Confidence 5667777777765444 478999999988754432 111111 1 11334666666667999999999997653
No 292
>cd05884 Ig2_Necl-3 Second immunoglobulin (Ig)-like domain of nectin-like molecule-3 (Necl-3, also known as cell adhesion molecule 2 (CADM2)). Ig2_Necl-3: second immunoglobulin (Ig)-like domain of nectin-like molecule-3 (Necl-3, also known as cell adhesion molecule 2 (CADM2)). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). These have an extracellular region containing three Ig-like domains, one transmembrane region, and one cytoplasmic region. Necl-3 has been shown to accumulate in tissues of the central and peripheral nervous system, where it is expressed in ependymal cells and myelinated axons. It is observed at the interface between the axon shaft and the myelin sheath. Ig domains are likely to participate in ligand binding and recognition.
Probab=98.15 E-value=1.3e-05 Score=53.85 Aligned_cols=66 Identities=18% Similarity=0.349 Sum_probs=44.5
Q ss_pred EEEEEeeecCCCCCeEEEEeCCeeCCCCCCceeeecC----CCeeeEEEcccCCCCCeEEEEEEEecccc
Q psy15667 211 TRVICGVTHGDPPLTIRWLKDGKPLSPRFPVNVSDLD----SFSSLLSINSVSAAHSGEYTCVASNTAAQ 276 (286)
Q Consensus 211 ~~l~c~~~~~~p~~~~~W~~~g~~~~~~~~~~~~~~~----~~~~~L~i~~v~~~d~G~Y~C~a~N~~g~ 276 (286)
+.|.|.+..+.|+..++|+|+|+.+............ .....|.+..-...|...|+|.+.+..-.
T Consensus 2 ~~LtC~a~gf~P~~~itW~kng~~l~~~~~~~~~~~~~~t~~~~s~L~~~~~~~d~g~~ytC~v~h~~l~ 71 (83)
T cd05884 2 MQLTCKTSGSKPAADIRWFKNDKEIKDVKYLKEEDANRKTFTVSSTLDFRVDRSDDGVAIICRVDHESLN 71 (83)
T ss_pred EEEEEEeCCccCCCEEEEEECCEECcCceeeEeeCCCCCEEEEEEEEEEEcccccCCCEEEEEEechhcC
Confidence 5688888878888999999999987543211111111 11345666655567789999999997643
No 293
>cd05846 Ig1_MRC-OX-2_like First immunoglobulin (Ig) domain of rat MRC OX-2 antigen (also known as CD200) and similar proteins. Ig1_ MRC-OX-2_like: domain similar to the first immunoglobulin (Ig) domain of rat MRC OX-2 antigen (also known as CD200). MRC OX-2 is a membrane glycoprotein expressed in a variety of lymphoid and non-lymphoid cells in rats. It has a similar broad distribution pattern in humans. MRC OX-2 may regulate myeloid cell activity. The protein has an extracellular portion containing two Ig-like domains, a transmembrane portion, and a cytoplasmic portion.
Probab=98.14 E-value=8.9e-06 Score=56.54 Aligned_cols=68 Identities=21% Similarity=0.341 Sum_probs=39.7
Q ss_pred CCcEEEEEEeecCCC-CeeEEeeCCE----Ec----C-C----CCeeEeceEEecccceeEEEEEcccccCCCeEEEEEE
Q psy15667 17 GPAVSLKCIASGNPT-PDIGWTLDGF----EL----P-T----NNRFVIGQFVSGHGDVISHVNISHVTVEDGGEYACVA 82 (286)
Q Consensus 17 G~~~~l~C~~~g~p~-p~v~W~~~~~----~l----~-~----~~~~~~~~~~~~~~~~~~~l~I~~~~~~D~G~Y~C~a 82 (286)
|++++|.|....... -.|.|+|... .+ . . .+.+..............+|+|.+++.+|+|.|.|..
T Consensus 1 G~~vtL~C~~~~~~~~~~v~W~k~~~~~~~~i~~~~~~~~~~~~~~~~~r~~~~~~~~~~~sL~I~nv~~~D~G~Y~C~~ 80 (97)
T cd05846 1 GGNVTLSCNLTLPEEVLQVTWQKIQGSSPENIATYSEKYGVKIQPSYFRRRSITSLGLNSTSITIWNVTLEDEGCYKCIF 80 (97)
T ss_pred CCcEEEEEEeCCCCeeEEEEEEEcCCCCceEEEEEcccCCcccCCCccCeEEEcCCCCCccEEEEeCCceeeeEEEEEEE
Confidence 789999998664432 3699998532 11 0 0 0111100000001112246999999999999999987
Q ss_pred Ec
Q psy15667 83 EN 84 (286)
Q Consensus 83 ~n 84 (286)
..
T Consensus 81 ~~ 82 (97)
T cd05846 81 NT 82 (97)
T ss_pred Ee
Confidence 53
No 294
>cd05775 Ig_SLAM-CD84_like_N N-terminal immunoglobulin (Ig)-like domain of the signaling lymphocyte activation molecule (SLAM) family, CD84_like. Ig_SLAM-CD84_like_N: The N-terminal immunoglobulin (Ig)-like domain of the signaling lymphocyte activation molecule (SLAM) family, CD84_like. The SLAM family is a group of immune-cell specific receptors that can regulate both adaptive and innate immune responses. Members of this group include proteins such as CD84, SLAM (CD150), Ly-9 (CD229), NTB-A (ly-108, SLAM6), 19A (CRACC), and SLAMF9. The genes coding for the SLAM family are nested on chromosome 1, in humans at 1q23, and in mice at 1H2. The SLAM family is a subset of the CD2 family, which also includes CD2 and CD58 located on chromosome 1 at 1p13 in humans. In mice, CD2 is located on chromosome 3, and there is no CD58 homolog. The SLAM family proteins are organized as an extracellular domain with either two or four Ig-like domains, a single transmembrane segment, and a cytoplasmic region
Probab=98.14 E-value=4e-06 Score=58.32 Aligned_cols=71 Identities=18% Similarity=0.258 Sum_probs=45.8
Q ss_pred cCCCcEEEEEEeec-CCCCeeEEeeCCEEcC--C-----------CCeeEeceEEecccceeEEEEEcccccCCCeEEEE
Q psy15667 15 QPGPAVSLKCIASG-NPTPDIGWTLDGFELP--T-----------NNRFVIGQFVSGHGDVISHVNISHVTVEDGGEYAC 80 (286)
Q Consensus 15 ~~G~~~~l~C~~~g-~p~p~v~W~~~~~~l~--~-----------~~~~~~~~~~~~~~~~~~~l~I~~~~~~D~G~Y~C 80 (286)
..|++|+|.|.... .....+.|++....+. . +.++.. ......+ ..+|+|.+++.+|+|.|.|
T Consensus 2 ~~G~sVtL~c~~~~~~~~~~v~W~~~~~~~i~~~~~~~~~~~~~~~~~f~~--R~~~~~~-~~sL~I~~~~~~DsG~Y~c 78 (97)
T cd05775 2 ILGGSVTLPLNIPDGTEIESITWSFNTSLAIITPGEETAPEIIVTDPSYKE--RVNFSQN-DYSLQISNLKMEDAGSYRA 78 (97)
T ss_pred ccCCeEEEeCCCCCCcEEEEEEEecCCEeEEEecCCCCCCccEEeCCCcee--eEEecCC-ceeEEECCCchHHCEEEEE
Confidence 36999999997754 4456899998643221 1 111111 1111121 2369999999999999999
Q ss_pred EEEcCCEE
Q psy15667 81 VAENRAGT 88 (286)
Q Consensus 81 ~a~n~~g~ 88 (286)
.+.+..|.
T Consensus 79 ~v~~~~~~ 86 (97)
T cd05775 79 EINTKNGV 86 (97)
T ss_pred EEEcCCCC
Confidence 98876543
No 295
>cd07706 IgV_TCR_delta Immunoglobulin (Ig) variable (V) domain of T-cell receptor (TCR) delta chain. IgV_TCR_delta: immunoglobulin (Ig) variable (V) domain of the delta chain of gamma/delta T-cell receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are heterodimers consisting of alpha and beta chains or gamma and delta chains. Each chain contains a variable (V) and a constant (C) region. The majority of T cells contain alpha/beta TCRs but a small subset contain gamma/delta TCRs. Alpha/beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. Gamma/delta TCRs recognize intact protein antigens; they recognize protein antigens directly and without antigen processing, and MHC independently of the bound peptide. Gamma/delta T cells can also be stimulated by non-peptide antigens such as small phosphate- or amine-containing compounds. The variable domain of gamma/delta TCRs is responsible for antigen recognition and is
Probab=98.14 E-value=6e-05 Score=54.24 Aligned_cols=85 Identities=19% Similarity=0.207 Sum_probs=49.0
Q ss_pred ceEEecCCCEEEEeeEeee-cCCeEEEEEcCCcccccccccCCCCCCCeEEEEEeeecCCCCCeEEEEeCCeeCCCCCCc
Q psy15667 163 KVTAIDGEGLSIKCPVAGY-PIEEVHWEKVPPKIESFAFPFDGLPEGARTRVICGVTHGDPPLTIRWLKDGKPLSPRFPV 241 (286)
Q Consensus 163 ~~~~~~g~~~~l~c~~~~~-p~~~v~w~~~~~~~~~~~~~~~~~~~g~~~~l~c~~~~~~p~~~~~W~~~g~~~~~~~~~ 241 (286)
.+.+.+|++++|.|..... ....+.|.+..+. ....+.- ...+........++
T Consensus 8 ~v~~~~G~~v~L~C~~~~~~~~~~v~Wyrq~~~--------------~~~~~l~------------~~~~~~~~~~~~R~ 61 (116)
T cd07706 8 DVSVQVGEEVTLNCRYETSWTNYYIFWYKQLPS--------------GEMTFLI------------RQKSIYGNATKGRY 61 (116)
T ss_pred ceEEcCCCCEEEEEEEeCCCCceEEEEEEECCC--------------CceEEEE------------EecCccCCccCCeE
Confidence 4567789999999988754 4456889885321 1100000 00000000011233
Q ss_pred eeee-cCCCeeeEEEcccCCCCCeEEEEEEEec
Q psy15667 242 NVSD-LDSFSSLLSINSVSAAHSGEYTCVASNT 273 (286)
Q Consensus 242 ~~~~-~~~~~~~L~i~~v~~~d~G~Y~C~a~N~ 273 (286)
.+.. .......|.|.+++.+|+|.|.|...+.
T Consensus 62 ~~~~~~~~~~~sL~I~~~~~~Dsg~Y~C~~~~~ 94 (116)
T cd07706 62 SVNFQKAQKSISLTISALQLEDSAKYFCALSTL 94 (116)
T ss_pred EEEEeccCCEEEEEECCCCHHHCEEEEEEEECC
Confidence 3332 1223457999999999999999998853
No 296
>cd05718 Ig1_PVR_like First immunoglobulin (Ig) domain of poliovirus receptor (PVR, also known as CD155) and similar proteins. Ig1_PVR_like: domain similar to the first immunoglobulin (Ig) domain of poliovirus receptor (PVR, also known as CD155). Poliovirus (PV) binds to its cellular receptor (PVR/CD155) to initiate infection. CD155 is a membrane-anchored, single-span glycoprotein; its extracellular region has three Ig-like domains. There are four different isotypes of CD155 (referred to as alpha, beta, gamma, and delta), that result from alternate splicing of the CD155 mRNA, and have identical extracellular domains. CD155-beta and - gamma, are secreted, CD155-alpha and delta are membrane-bound and function as PV receptors. The virus recognition site is contained in the amino-terminal domain, D1. Having the virus attachment site on the receptor distal from the plasma membrane, may be important for successful initiation of infection of cells by the virus. CD155 binds in the poliovirus "c
Probab=98.13 E-value=1e-05 Score=56.24 Aligned_cols=63 Identities=21% Similarity=0.353 Sum_probs=39.9
Q ss_pred CcEEEEEEeecCC---CCeeEEeeCCEE----c-----------CC--CCeeEeceEEecccceeEEEEEcccccCCCeE
Q psy15667 18 PAVSLKCIASGNP---TPDIGWTLDGFE----L-----------PT--NNRFVIGQFVSGHGDVISHVNISHVTVEDGGE 77 (286)
Q Consensus 18 ~~~~l~C~~~g~p---~p~v~W~~~~~~----l-----------~~--~~~~~~~~~~~~~~~~~~~l~I~~~~~~D~G~ 77 (286)
++|+|.|.....+ ...|.|+|.... + .. ..|... ........+|.|.+++.+|+|.
T Consensus 1 ~~v~L~C~~~~~~~~~~~~v~W~k~~~~~~~~i~~~~~~~~~~~~~~~~~R~~~----~~~~~~~~sL~I~~v~~~D~G~ 76 (98)
T cd05718 1 ESVTLECSFPVPGPVQITQVTWMKITGGSKQNIAVFHPQYGISIPPSYEGRVSF----LNSSLEDATISISNLRLEDEGN 76 (98)
T ss_pred CCEEEEeEeeCCCCceEEEEEEeeECCCCCEEEEEEecCCCcccCcCcCceEEE----eCCCCCceEEEEccCCcccCEE
Confidence 5799999887654 447999986431 0 00 011100 0000012469999999999999
Q ss_pred EEEEEEc
Q psy15667 78 YACVAEN 84 (286)
Q Consensus 78 Y~C~a~n 84 (286)
|.|.+.+
T Consensus 77 Y~C~v~~ 83 (98)
T cd05718 77 YICEFAT 83 (98)
T ss_pred EEEEEEe
Confidence 9999864
No 297
>cd05716 Ig_pIgR Immunoglobulin (Ig)-like domain in the polymeric Ig receptor (pIgR). Ig_pIgR: Immunoglobulin (Ig)-like domain in the polymeric Ig receptor (pIgR). pIgR delivers dimeric IgA and pentameric IgM to mucosal secretions. Polymeric immunoglobulin (pIgs) are the first defense against pathogens and toxins. IgA and IgM can form polymers via an 18-residue extension at their c-termini referred to as the tailpiece. pIgR transports pIgs across mucosal epithelia into mucosal secretions. Human pIgR is a glycosylated type I transmembrane protein, comprised of a 620 residue extracellular region, a 23 residue transmembrane region, and a 103 residue cytoplasmic tail. The extracellular region contains five domains that share sequence similarity with Ig variable (v) regions.
Probab=98.12 E-value=7.9e-06 Score=56.93 Aligned_cols=71 Identities=20% Similarity=0.296 Sum_probs=47.1
Q ss_pred ccccCCCcEEEEEEeec-CCCCeeEEeeCCEE-----c--------CCCCeeEeceEEecccceeEEEEEcccccCCCeE
Q psy15667 12 QTLQPGPAVSLKCIASG-NPTPDIGWTLDGFE-----L--------PTNNRFVIGQFVSGHGDVISHVNISHVTVEDGGE 77 (286)
Q Consensus 12 ~~~~~G~~~~l~C~~~g-~p~p~v~W~~~~~~-----l--------~~~~~~~~~~~~~~~~~~~~~l~I~~~~~~D~G~ 77 (286)
+++.+|++|+|.|.... .+...+.|+|.... | ....|+.+.. ........|.|.+++.+|+|.
T Consensus 2 v~~~~G~~vtl~C~~~~~~~~~~~~W~r~~~~~~~~~l~~~~~~~~~~~~r~~~~~---~~~~~~~~L~I~~v~~~DsG~ 78 (98)
T cd05716 2 VTGELGGSVTIPCPYPPKNRSYEKYWCKWGSAGCCLIIVSEGSVQSQYEGRVSLTD---DPDNGVFTVTLNQLRKEDAGW 78 (98)
T ss_pred EEEEeCCeEEEEeeCCCCCCCcEeEeECCCCCCCCeEEECCCccccccCCCEEEEe---cCCCCEEEEEEcCCCHHHCEE
Confidence 35789999999998765 35567899975321 1 0123333211 111223469999999999999
Q ss_pred EEEEEEcC
Q psy15667 78 YACVAENR 85 (286)
Q Consensus 78 Y~C~a~n~ 85 (286)
|.|.+...
T Consensus 79 Y~C~~~~~ 86 (98)
T cd05716 79 YWCGVGDD 86 (98)
T ss_pred EEEEcccC
Confidence 99987664
No 298
>cd05767 IgC_MHC_II_alpha Class II major histocompatibility complex (MHC) alpha chain immunoglobulin domain. IgC_MHC_II_alpha: Immunoglobulin (Ig) domain of major histocompatibility complex (MHC) class II alpha chain. MHC class II molecules play a key role in the initiation of the antigen-specific immune reponse. In both humans and in mice these molecules have been shown to be expressed constitutively on the cell surface of professional antigen-presenting cells (APCs), for example on B-lymphocytes, monocytes, and macrophages. The expression of these molecules has been shown to be induced in nonprofessional APCs such as keratinocyctes, and they are expressed on the surface of activated human T cells and on T cells from other species. The MHC II molecules present antigenic peptides to CD4(+) T-lymphocytes. These peptides derive mostly from protelytic processing via the endocytic pathway, of antigens internalized by the APC. These peptides bind to the MHC class II molecules in the endosom
Probab=98.11 E-value=8e-05 Score=51.23 Aligned_cols=79 Identities=20% Similarity=0.415 Sum_probs=46.6
Q ss_pred CCeeEeccccccccCCCcEEEEEEeecC-CC-CeeEEeeCCEEcCCCCeeEeceEEecccce--eEEEEEcccccCCCeE
Q psy15667 2 PPILTYSFIEQTLQPGPAVSLKCIASGN-PT-PDIGWTLDGFELPTNNRFVIGQFVSGHGDV--ISHVNISHVTVEDGGE 77 (286)
Q Consensus 2 ~p~~~~~~~~~~~~~G~~~~l~C~~~g~-p~-p~v~W~~~~~~l~~~~~~~~~~~~~~~~~~--~~~l~I~~~~~~D~G~ 77 (286)
||.+.+...+ ....|+.++|.|.+.|. |. -.++|.+||+.+..+... .......++.. ...|.|. .++...
T Consensus 1 ~P~V~v~~~~-~~~~~~~~tL~C~a~gFyP~~I~v~W~~~g~~~~~~~~~-~~~~~~~Dgty~~~s~L~v~---~~~~~~ 75 (94)
T cd05767 1 PPEVTVFSLK-PVELGEPNTLICFVDNFFPPVLNVTWLKNGVPVTDGVSE-TRYYPRQDLSFQKFSYLNFT---PEEGDI 75 (94)
T ss_pred CCEEEEEeCC-cccCCCCeEEEEEEEEEECCcCEEEEEECCeEccCceEE-eeeEeCCCCcEEEEEEEEEE---CCCCCe
Confidence 6777765544 34557778999999994 43 478999999988643211 11111111211 1234443 345569
Q ss_pred EEEEEEcC
Q psy15667 78 YACVAENR 85 (286)
Q Consensus 78 Y~C~a~n~ 85 (286)
|+|.+.-.
T Consensus 76 ytC~V~H~ 83 (94)
T cd05767 76 YSCIVEHW 83 (94)
T ss_pred EEEEEEeC
Confidence 99988654
No 299
>cd07694 Ig2_CD4 Second immunoglobulin (Ig) domain of CD4. Ig2_CD4; second immunoglobulin (Ig) domain of CD4. CD4 and CD8 are the two primary co-receptor proteins found on the surface of T cells, and the presence of either CD4 or CD8 determines the function of the T cell. CD4 is found on helper T cells, where it is required for the binding of MHC (major histocompatibility complex) class II molecules, while CD8 is found on cytotoxic T cells, where it is required for the binding of MHC class I molecules. CD4 contains four immunoglobulin domains, with the first three included in this hierarchy. The fourth domain has a general Ig architecture, but has slight topological changes in the arrangement of beta strands relative to the other structures in this family and is not specifically included in the hierarchy.
Probab=98.10 E-value=3.8e-05 Score=51.19 Aligned_cols=75 Identities=15% Similarity=0.310 Sum_probs=48.1
Q ss_pred CCCCCCCeEEEEEeeecC-CCCCeEEEEeCCeeCCCCCCceeeecCCCeeeEEEcccCCCCCeEEEEEEEecccceeeEE
Q psy15667 203 DGLPEGARTRVICGVTHG-DPPLTIRWLKDGKPLSPRFPVNVSDLDSFSSLLSINSVSAAHSGEYTCVASNTAAQARYSS 281 (286)
Q Consensus 203 ~~~~~g~~~~l~c~~~~~-~p~~~~~W~~~g~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~N~~g~~~~~~ 281 (286)
..+..|+.+.|.|....+ .|.++++|.-.+...-. .......+|.+..++..|+|.++|...-..-.....+
T Consensus 9 ~~lL~G~sLtLtl~~~s~s~p~~~i~w~~P~n~~~~-------~~~~~~ktL~~~qv~~qdSG~WtC~V~~~~k~~~~~~ 81 (88)
T cd07694 9 DHVLSGTNLTLTLHGSSNSLPAFKVEWRGPGNKSKQ-------ILNQDKKTLNLVQLGPNDSGTWDCIVSVNSSEKTLKL 81 (88)
T ss_pred CeeecCCcEEEEEecCCCCCCCccEEEeCCCCccce-------eccCCccEEEeceeCcccCCEEEEEEEECceEEEEEe
Confidence 346678888888887443 44568999865543211 0112345899999999999999999864333333333
Q ss_pred EEE
Q psy15667 282 KLQ 284 (286)
Q Consensus 282 ~L~ 284 (286)
.+.
T Consensus 82 ~V~ 84 (88)
T cd07694 82 DIK 84 (88)
T ss_pred eEE
Confidence 343
No 300
>cd00096 Ig Immunoglobulin domain. Ig: immunoglobulin (Ig) domain found in the Ig superfamily. The Ig superfamily is a heterogenous group of proteins, built on a common fold comprised of a sandwich of two beta sheets. Members of this group are components of immunoglobulin, neuroglia, cell surface glycoproteins, such as, T-cell receptors, CD2, CD4, CD8, and membrane glycoproteins, such as, butyrophilin and chondroitin sulfate proteoglycan core protein. A predominant feature of most Ig domains is a disulfide bridge connecting the two beta-sheets with a tryptophan residue packed against the disulfide bond.
Probab=98.08 E-value=2.9e-05 Score=49.41 Aligned_cols=66 Identities=42% Similarity=0.718 Sum_probs=44.9
Q ss_pred EEEEEEeecCCCCeeEEeeCCEEcCCCCeeEeceEEecccceeEEEEEcccccCCCeEEEEEEEcCC
Q psy15667 20 VSLKCIASGNPTPDIGWTLDGFELPTNNRFVIGQFVSGHGDVISHVNISHVTVEDGGEYACVAENRA 86 (286)
Q Consensus 20 ~~l~C~~~g~p~p~v~W~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~I~~~~~~D~G~Y~C~a~n~~ 86 (286)
+.|.|.+.+.+...+.|++++........... ............|.|.++..+|.|.|.|.+.+..
T Consensus 1 ~~l~C~~~~~~~~~~~W~~~~~~~~~~~~~~~-~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~ 66 (74)
T cd00096 1 VTLTCLASGPPPPTITWLKNGKPLPSSVLTRV-RSSRGTSSGSSTLTISNVTLEDSGTYTCVASNSA 66 (74)
T ss_pred CEEEEEecCCCCCcEEEEECCEECCCcccEEe-ccccCcceeEEEEEECccCcccCcEEEEEEecCc
Confidence 47899999878889999998876543221000 0000111223458999999999999999998865
No 301
>cd05769 IgC_TCR_beta T cell receptor (TCR) beta chain constant immunoglobulin domain. IgC_TCR_beta: Constant domain of the beta chain of alpha/beta T-cell antigen receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are composed of alpha and beta, or gamma and delta, polypeptide chains with variable (V) and constant (C) regions. This group includes the variable domain of the beta chain. Alpha/beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. The antigen binding site is formed by the variable domains of the alpha and beta chains, located at the N-terminus of each chain. Alpha/beta TCRs recognize antigens differently from gamma/delta TCRs.
Probab=98.07 E-value=3.6e-05 Score=54.99 Aligned_cols=84 Identities=18% Similarity=0.343 Sum_probs=51.4
Q ss_pred CCCeeEeccccc-cccCCCcEEEEEEeecC-CC-CeeEEeeCCEEcCCCCeeEeceEEecccce---eEEEEEcccccCC
Q psy15667 1 TPPILTYSFIEQ-TLQPGPAVSLKCIASGN-PT-PDIGWTLDGFELPTNNRFVIGQFVSGHGDV---ISHVNISHVTVED 74 (286)
Q Consensus 1 ~~p~~~~~~~~~-~~~~G~~~~l~C~~~g~-p~-p~v~W~~~~~~l~~~~~~~~~~~~~~~~~~---~~~l~I~~~~~~D 74 (286)
+||.+.+-++.. .+.+++.++|.|.+.|. |. -.|+|++||+.+..+..... .....+++. .+.|.|......|
T Consensus 1 ~~P~V~v~~ps~~e~~~~~~~tL~Cla~gFyP~~I~V~W~kng~~l~~g~~~~~-~~~~~~~gTYs~~S~L~v~~~~w~~ 79 (115)
T cd05769 1 TPPTVAIFPPSEAEIRNKRKATLVCLATGFYPDHVSLSWKVNGKEVTDGVATDP-QALRENTSTYSISSRLRVSATEWFN 79 (115)
T ss_pred CCCEEEEECcChHHhccCCCcEEEEEEEeEeCCCcEEEEEECCEECCCCccccc-ceecCCCCeEEEEEEEEEChHHhcc
Confidence 578777554443 56678889999999984 55 38899999998864321100 001111121 2346666555444
Q ss_pred -CeEEEEEEEcC
Q psy15667 75 -GGEYACVAENR 85 (286)
Q Consensus 75 -~G~Y~C~a~n~ 85 (286)
...|+|.+.-.
T Consensus 80 ~~~~ytC~V~H~ 91 (115)
T cd05769 80 PRNTFTCIVQFY 91 (115)
T ss_pred CCCeEEEEEEEe
Confidence 45999988653
No 302
>cd05716 Ig_pIgR Immunoglobulin (Ig)-like domain in the polymeric Ig receptor (pIgR). Ig_pIgR: Immunoglobulin (Ig)-like domain in the polymeric Ig receptor (pIgR). pIgR delivers dimeric IgA and pentameric IgM to mucosal secretions. Polymeric immunoglobulin (pIgs) are the first defense against pathogens and toxins. IgA and IgM can form polymers via an 18-residue extension at their c-termini referred to as the tailpiece. pIgR transports pIgs across mucosal epithelia into mucosal secretions. Human pIgR is a glycosylated type I transmembrane protein, comprised of a 620 residue extracellular region, a 23 residue transmembrane region, and a 103 residue cytoplasmic tail. The extracellular region contains five domains that share sequence similarity with Ig variable (v) regions.
Probab=98.07 E-value=2.5e-05 Score=54.36 Aligned_cols=26 Identities=15% Similarity=0.265 Sum_probs=22.4
Q ss_pred CeeeEEEcccCCCCCeEEEEEEEecc
Q psy15667 249 FSSLLSINSVSAAHSGEYTCVASNTA 274 (286)
Q Consensus 249 ~~~~L~i~~v~~~d~G~Y~C~a~N~~ 274 (286)
....|.|.+++.+|+|.|.|.+.+..
T Consensus 62 ~~~~L~I~~v~~~DsG~Y~C~~~~~~ 87 (98)
T cd05716 62 GVFTVTLNQLRKEDAGWYWCGVGDDG 87 (98)
T ss_pred CEEEEEEcCCCHHHCEEEEEEcccCC
Confidence 34579999999999999999888754
No 303
>cd05720 Ig_CD8_alpha Immunoglobulin (Ig) like domain of CD8 alpha chain. Ig_CD8_alpha: immunoglobulin (Ig)-like domain in CD8 alpha. The CD8 glycoprotein plays an essential role in the control of T-cell selection, maturation and the T-cell receptor (TCR)-mediated response to peptide antigen. CD8 is comprised of alpha and beta subunits and is expressed as either an alphaalpha or alphabeta dimer. Both dimeric isoforms can serve as a coreceptor for T cell activation and differentiation, however they have distinct physiological roles, different cellular distributions, unique binding partners etc. Each CD8 subunit is comprised of an extracellular domain containing a v-type Ig-like domain, a single pass transmembrane portion and a short intracellular domain. The Ig domain of CD8 alpha binds to antibodies.
Probab=98.07 E-value=2e-05 Score=55.53 Aligned_cols=67 Identities=19% Similarity=0.351 Sum_probs=44.5
Q ss_pred cccCCCcEEEEEEeecCCCCeeEEeeCCE----E---c---CC------------CCeeEeceEEecccceeEEEEEccc
Q psy15667 13 TLQPGPAVSLKCIASGNPTPDIGWTLDGF----E---L---PT------------NNRFVIGQFVSGHGDVISHVNISHV 70 (286)
Q Consensus 13 ~~~~G~~~~l~C~~~g~p~p~v~W~~~~~----~---l---~~------------~~~~~~~~~~~~~~~~~~~l~I~~~ 70 (286)
.+.+|++|+|.|.....-...+.|++... . | .. ..|+..+ .......|.|.++
T Consensus 2 ~v~~G~~vtL~C~~~~~~~~~v~Wyrq~~g~~~~~~~l~~~~~~~~~~~~~~~~~~~rf~~~-----~~~~~~~L~I~~~ 76 (104)
T cd05720 2 DAELGQKVELKCEVLNSSPTGCSWLFQPPGSAPQPTFLVYLSGSSKITWDEEELSSKRFSGS-----RSSNSFVLTLKNF 76 (104)
T ss_pred cccCCCeEEEEEEecCCCCCcEEEEEeCCCCCCCCEEEEEEeCCCCeeeccccCCCceEEEE-----ecCCEEEEEECCC
Confidence 57899999999988655445699997431 1 1 11 1122110 1123346999999
Q ss_pred ccCCCeEEEEEEEc
Q psy15667 71 TVEDGGEYACVAEN 84 (286)
Q Consensus 71 ~~~D~G~Y~C~a~n 84 (286)
+.+|+|+|.|.+.+
T Consensus 77 ~~sDsgtY~Ca~~~ 90 (104)
T cd05720 77 QKENEGYYFCSVAS 90 (104)
T ss_pred CHHHCEEEEEEEcc
Confidence 99999999998653
No 304
>cd05766 IgC_MHC_II_beta Class II major histocompatibility complex (MHC) beta chain immunoglobulin domain. IgC_MHC_II_beta: Immunoglobulin (Ig) domain of major histocompatibility complex (MHC) class II beta chain. MHC class II molecules play a key role in the initiation of the antigen-specific immune reponse. In both humans and in mice these molecules have been shown to be expressed constitutively on the cell surface of professional antigen-presenting cells (APCs), for example on B-lymphocytes, monocytes, and macrophages. The expression of these molecules has been shown to be induced in nonprofessional APCs such as keratinocyctes, and they are expressed on the surface of activated human T cells and on T cells from other species. The MHC II molecules present antigenic peptides to CD4(+) T-lymphocytes. These peptides derive mostly from protelytic processing via the endocytic pathway, of antigens internalized by the APC. These peptides bind to the MHC class II molecules in the endosome be
Probab=98.05 E-value=0.0001 Score=50.85 Aligned_cols=71 Identities=24% Similarity=0.354 Sum_probs=41.7
Q ss_pred ccccCCCcEEEEEEeecC-CCC-eeEEeeCCEEcCCCCeeEeceEEecccc-eeEEEEEcccccCCCeEEEEEEEcC
Q psy15667 12 QTLQPGPAVSLKCIASGN-PTP-DIGWTLDGFELPTNNRFVIGQFVSGHGD-VISHVNISHVTVEDGGEYACVAENR 85 (286)
Q Consensus 12 ~~~~~G~~~~l~C~~~g~-p~p-~v~W~~~~~~l~~~~~~~~~~~~~~~~~-~~~~l~I~~~~~~D~G~Y~C~a~n~ 85 (286)
..+..|+.++|.|.+.|. |.. .++|++||+.+..+... .... .+++ .......-.+...+...|+|.+.-.
T Consensus 9 ~~~~~~~~~~L~C~~~gFyP~~i~v~W~~~g~~~~~~~~~--~~~~-~~~dgTy~~~s~L~~~~~~~~~ysC~V~H~ 82 (94)
T cd05766 9 QTGSLSHPHLLVCHVWGFYPPEITVKWFKNGQEETEGVVS--TELI-PNGDWTYQILVMLETTPSRGDTYTCVVEHS 82 (94)
T ss_pred CCccCCCCeEEEEEEeeecCCCCEEEEEECCeecCCCcee--cceE-ECCCCcEEEEEEEEEcCCCCCEEEEEEEeC
Confidence 444578999999999994 544 78999999987653111 1111 1222 1111111223344566999988764
No 305
>cd05711 Ig_FcalphaRI Immunoglobulin (IG)-like domain of of FcalphaRI. IG_FcalphaRI : immunoglobulin (IG)-like domain of of FcalphaRI. FcalphaRI (CD89) is an IgA-specific receptor that is expressed on monocytes, eosinophils, neutrophils and macrophages. FcalphaRI mediates IgA-induced immune effector responses such as phagocytosis, antibody-dependent cell-mediated cytotoxicity and respiratory burst. Both monomeric and dimeric IgA can bind to FcalphaRI, and monomeric or dimeric IgA immune complexes can activate phagocytosis and other immune responses through the clustering of FcalphaRI. The Fc RI ectodomain is comprised of two Ig-like domains oriented at about 90 degree to each another.
Probab=98.04 E-value=3.7e-05 Score=53.07 Aligned_cols=66 Identities=20% Similarity=0.353 Sum_probs=43.9
Q ss_pred CCCCCCCeEEEEEeeecCCCCCeEEEEeCCeeCCCCCCceeeecCCCeeeEEEcccCCCCCeEEEEEEE
Q psy15667 203 DGLPEGARTRVICGVTHGDPPLTIRWLKDGKPLSPRFPVNVSDLDSFSSLLSINSVSAAHSGEYTCVAS 271 (286)
Q Consensus 203 ~~~~~g~~~~l~c~~~~~~p~~~~~W~~~g~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~ 271 (286)
..+.+|+.+.|.|.... ....+.|+|+|....... ............+.|..++.+|+|.|.|...
T Consensus 10 ~vV~~G~~VTL~C~~~~--~~~~f~l~k~g~~~~~~~-~~~~~~~~~~a~f~I~~~~~~~~G~Y~C~~~ 75 (94)
T cd05711 10 PVVPSGENVTLQCHSDI--RFDRFILYKEGRSKPVLH-LYEKHHGGFQASFPLGPVTPAHAGTYRCYGS 75 (94)
T ss_pred CccCCCCeEEEEEecCC--CCCEEEEEECCCCCCcee-cccccCCeEEEEEEecCCCcccCEEEEEEEE
Confidence 34678888888886542 446789999987532210 0000011234578999999999999999974
No 306
>PF07686 V-set: Immunoglobulin V-set domain; InterPro: IPR013106 The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulphide bonds. There are two types of light chains: kappa and lambda, each composed of a constant domain (CL) and a variable domain (VL). There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are highly modular proteins, in which the variable and constant domains have clear, conserved sequence patterns. The domains in Ig and Ig-like molecules are grouped into four types: V-set (variable; IPR013106 from INTERPRO), C1-set (constant-1; IPR003597 from INTERPRO), C2-set (constant-2; IPR008424 from INTERPRO) and I-set (intermediate; IPR013098 from INTERPRO) []. Structural studies have shown that these domains share a common core Greek-key beta-sandwich structure, with the types differing in the number of strands in the beta-sheets as well as in their sequence patterns [, ]. Immunoglobulin-like domains that are related in both sequence and structure can be found in several diverse protein families. Ig-like domains are involved in a variety of functions, including cell-cell recognition, cell-surface receptors, muscle structure and the immune system []. This entry represents the V-set domains, which are Ig-like domains resembling the antibody variable domain. V-set domains are found in diverse protein families, including immunoglobulin light and heavy chains; in several T-cell receptors such as CD2 (Cluster of Differentiation 2), CD4, CD80, and CD86; in myelin membrane adhesion molecules; in junction adhesion molecules (JAM); in tyrosine-protein kinase receptors; and in the programmed cell death protein 1 (PD1).; PDB: 1PY9_A 2NXY_D 1U9K_B 3RNK_A 3BP6_A 3BIK_B 3SBW_A 1NPU_A 3BP5_A 3RNQ_A ....
Probab=98.02 E-value=1.5e-05 Score=56.82 Aligned_cols=75 Identities=20% Similarity=0.312 Sum_probs=49.9
Q ss_pred ccccccccCCCcEEEEEEee-cCCCCeeEEeeCCE-----EcC---C-----------CCeeEeceEEecccceeEEEEE
Q psy15667 8 SFIEQTLQPGPAVSLKCIAS-GNPTPDIGWTLDGF-----ELP---T-----------NNRFVIGQFVSGHGDVISHVNI 67 (286)
Q Consensus 8 ~~~~~~~~~G~~~~l~C~~~-g~p~p~v~W~~~~~-----~l~---~-----------~~~~~~~~~~~~~~~~~~~l~I 67 (286)
.+....+.+|+++.|.|... ......+.|++... .+. . ..++.. .........+|.|
T Consensus 7 ~~~~v~~~~G~~v~L~C~~~~~~~~~~v~W~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~r~~~---~~~~~~~~~sL~i 83 (114)
T PF07686_consen 7 PPSPVTVQEGESVTLPCSYSSSSNQSSVYWYRQSPGQGPQLIIRYSLSSTNETPTPSYSGRFTF---SGNGSQNNFSLTI 83 (114)
T ss_dssp EESEEEEETTSEEEEEEEEESSSSGSEEEEEEEETTSEEEEEEEEETTEEEEEEETTETTTEEE---EEETTTTEEEEEE
T ss_pred eCCeEEEecCCCEEEEEEEeCCCCcceEEEEEECccccceeeeeeccceeeeccccceeeeeee---eecccCCeEEEEE
Confidence 45667889999999999988 55667899998321 111 0 011111 0001112346999
Q ss_pred cccccCCCeEEEEEEEcC
Q psy15667 68 SHVTVEDGGEYACVAENR 85 (286)
Q Consensus 68 ~~~~~~D~G~Y~C~a~n~ 85 (286)
.+++.+|+|.|.|.+...
T Consensus 84 ~~l~~~DsG~Y~C~v~~~ 101 (114)
T PF07686_consen 84 KNLQPSDSGTYFCQVSTS 101 (114)
T ss_dssp SSESGGGEEEEEEEEEES
T ss_pred CCCCcCcCEEEEEEEEEC
Confidence 999999999999998775
No 307
>cd07699 IgC_L Immunoglobulin Constant domain. IgC_L: Immunoglobulin (Ig) light chain constant (C) domain. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. In Ig, each chain is composed of one variable domain (IgV) and one or more constant domains (IgC); these names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. There are five types of heavy chains (alpha, gamma, delta, epsilon, and mu), which determine the type of immunoglobulin: IgA, IgG, IgD, IgE, and IgM, respectively. In higher vertebrates, there are two types of light chain, designated kappa and lambda, which seem to be functionally identical, and can associate with any of the heavy chains.
Probab=98.02 E-value=4.4e-05 Score=53.33 Aligned_cols=83 Identities=14% Similarity=0.279 Sum_probs=51.0
Q ss_pred CCeeEeccccc-cccCCCcEEEEEEeecC-C-CCeeEEeeCCEEcCCCCeeEeceEEecccc--eeEEEEEcccccCCCe
Q psy15667 2 PPILTYSFIEQ-TLQPGPAVSLKCIASGN-P-TPDIGWTLDGFELPTNNRFVIGQFVSGHGD--VISHVNISHVTVEDGG 76 (286)
Q Consensus 2 ~p~~~~~~~~~-~~~~G~~~~l~C~~~g~-p-~p~v~W~~~~~~l~~~~~~~~~~~~~~~~~--~~~~l~I~~~~~~D~G 76 (286)
||.+...+... .+..++.++|.|.+.|. | ...|+|++||+.+..+.. ........++. ....|.+..-...+..
T Consensus 1 pP~V~v~~p~~~~~~~~~~~~L~C~~~gfyP~~i~v~W~~~g~~~~~~~~-~~~~~~~~dgty~~~s~L~v~~~~w~~~~ 79 (100)
T cd07699 1 APSVTIFPPSSEELEKSGKATLVCLINDFYPGFATVQWKVDGATVSSGVQ-TSTTEQQSDNTYSLSSYLTLTKSDWNKHK 79 (100)
T ss_pred CCeEEEECCCHHHHccCCCcEEEEEEEeEECCCCEEEEEECCEECcccEe-ccccEECCCCCEEEEEEEEEcHHHhCCCC
Confidence 56666555554 55688999999999984 4 457899999999853211 00001111221 1233555555555567
Q ss_pred EEEEEEEcC
Q psy15667 77 EYACVAENR 85 (286)
Q Consensus 77 ~Y~C~a~n~ 85 (286)
.|+|.+.-.
T Consensus 80 ~~sC~V~H~ 88 (100)
T cd07699 80 VYTCEVTHE 88 (100)
T ss_pred eEEEEEEec
Confidence 999998764
No 308
>PF07686 V-set: Immunoglobulin V-set domain; InterPro: IPR013106 The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulphide bonds. There are two types of light chains: kappa and lambda, each composed of a constant domain (CL) and a variable domain (VL). There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are highly modular proteins, in which the variable and constant domains have clear, conserved sequence patterns. The domains in Ig and Ig-like molecules are grouped into four types: V-set (variable; IPR013106 from INTERPRO), C1-set (constant-1; IPR003597 from INTERPRO), C2-set (constant-2; IPR008424 from INTERPRO) and I-set (intermediate; IPR013098 from INTERPRO) []. Structural studies have shown that these domains share a common core Greek-key beta-sandwich structure, with the types differing in the number of strands in the beta-sheets as well as in their sequence patterns [, ]. Immunoglobulin-like domains that are related in both sequence and structure can be found in several diverse protein families. Ig-like domains are involved in a variety of functions, including cell-cell recognition, cell-surface receptors, muscle structure and the immune system []. This entry represents the V-set domains, which are Ig-like domains resembling the antibody variable domain. V-set domains are found in diverse protein families, including immunoglobulin light and heavy chains; in several T-cell receptors such as CD2 (Cluster of Differentiation 2), CD4, CD80, and CD86; in myelin membrane adhesion molecules; in junction adhesion molecules (JAM); in tyrosine-protein kinase receptors; and in the programmed cell death protein 1 (PD1).; PDB: 1PY9_A 2NXY_D 1U9K_B 3RNK_A 3BP6_A 3BIK_B 3SBW_A 1NPU_A 3BP5_A 3RNQ_A ....
Probab=97.99 E-value=0.0001 Score=52.39 Aligned_cols=98 Identities=23% Similarity=0.345 Sum_probs=58.4
Q ss_pred ceEEecCCCEEEEeeEe-eecCCeEEEEEcCCcccccccccCCCCCCCeEEEEEeeecCCCCCeEEEEeCCe----eCCC
Q psy15667 163 KVTAIDGEGLSIKCPVA-GYPIEEVHWEKVPPKIESFAFPFDGLPEGARTRVICGVTHGDPPLTIRWLKDGK----PLSP 237 (286)
Q Consensus 163 ~~~~~~g~~~~l~c~~~-~~p~~~v~w~~~~~~~~~~~~~~~~~~~g~~~~l~c~~~~~~p~~~~~W~~~g~----~~~~ 237 (286)
.+.+.+|+++.|.|... ......+.|.+..+... ..+. +.+..+.. ....
T Consensus 10 ~v~~~~G~~v~L~C~~~~~~~~~~v~W~~~~~~~~--------------~~~i-----------~~~~~~~~~~~~~~~~ 64 (114)
T PF07686_consen 10 PVTVQEGESVTLPCSYSSSSNQSSVYWYRQSPGQG--------------PQLI-----------IRYSLSSTNETPTPSY 64 (114)
T ss_dssp EEEEETTSEEEEEEEEESSSSGSEEEEEEEETTSE--------------EEEE-----------EEEETTEEEEEEETTE
T ss_pred eEEEecCCCEEEEEEEeCCCCcceEEEEEECcccc--------------ceee-----------eeeccceeeeccccce
Confidence 35667899999999998 44566788987432110 0000 00111100 0011
Q ss_pred CCCceeeec-CCCeeeEEEcccCCCCCeEEEEEEEec-ccceeeEEEEEE
Q psy15667 238 RFPVNVSDL-DSFSSLLSINSVSAAHSGEYTCVASNT-AAQARYSSKLQV 285 (286)
Q Consensus 238 ~~~~~~~~~-~~~~~~L~i~~v~~~d~G~Y~C~a~N~-~g~~~~~~~L~V 285 (286)
..+..+... ......|.|.+++.+|+|.|.|..... .......+.|.|
T Consensus 65 ~~r~~~~~~~~~~~~sL~i~~l~~~DsG~Y~C~v~~~~~~~~~~~~~L~V 114 (114)
T PF07686_consen 65 SGRFTFSGNGSQNNFSLTIKNLQPSDSGTYFCQVSTSNEQSFGNGTKLTV 114 (114)
T ss_dssp TTTEEEEEETTTTEEEEEESSESGGGEEEEEEEEEESSEEEEEEEEEEEE
T ss_pred eeeeeeeecccCCeEEEEECCCCcCcCEEEEEEEEECCCCEECCcEEEEC
Confidence 122332221 234568999999999999999999887 556666666765
No 309
>PF08205 C2-set_2: CD80-like C2-set immunoglobulin domain ; InterPro: IPR013162 The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulphide bonds. There are two types of light chains: kappa and lambda, each composed of a constant domain (CL) and a variable domain (VL). There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are highly modular proteins, in which the variable and constant domains have clear, conserved sequence patterns. The domains in Ig and Ig-like molecules are grouped into four types: V-set (variable; IPR013106 from INTERPRO), C1-set (constant-1; IPR003597 from INTERPRO), C2-set (constant-2; IPR008424 from INTERPRO) and I-set (intermediate; IPR013098 from INTERPRO) []. Structural studies have shown that these domains share a common core Greek-key beta-sandwich structure, with the types differing in the number of strands in the beta-sheets as well as in their sequence patterns [, ]. Immunoglobulin-like domains that are related in both sequence and structure can be found in several diverse protein families. Ig-like domains are involved in a variety of functions, including cell-cell recognition, cell-surface receptors, muscle structure and the immune system []. This entry represents the C2-set type domains found in the T-cell antigen CD80, as well as in related proteins. CD80 (B7-1) is a glycoprotein expressed on antigen-presenting cells []. The shared ligands on CD80 and CD86 (B7-2) deliver the co-stimulatory signal through CD28 and CTLA-4 on T-cells, where CD28 augments the T-cell response and CTLA-4 attenuates it [].; PDB: 3S58_A 3O3U_N 3CJJ_A 3S59_A 2PF6_B 2PET_A 3ALP_A 3SKU_D 3U83_A 3U82_B ....
Probab=97.99 E-value=2.5e-05 Score=53.28 Aligned_cols=67 Identities=33% Similarity=0.541 Sum_probs=41.2
Q ss_pred CCcEEEEEEee-cCCCCeeEEeeCCEEcCCCCeeEeceEEecccc---eeEEEEEcccccCCCeEEEEEEEcCC
Q psy15667 17 GPAVSLKCIAS-GNPTPDIGWTLDGFELPTNNRFVIGQFVSGHGD---VISHVNISHVTVEDGGEYACVAENRA 86 (286)
Q Consensus 17 G~~~~l~C~~~-g~p~p~v~W~~~~~~l~~~~~~~~~~~~~~~~~---~~~~l~I~~~~~~D~G~Y~C~a~n~~ 86 (286)
|+.+.|.|.+. |.|+|.++|+.++..+.... .. .......+ ..+.|.+..-..++...++|.|.+..
T Consensus 14 ~~~~~~~C~s~~~~P~~~i~W~~~~~~~~~~~-~~--~~~~~~~~~~~~~S~l~~~~~~~~~~~~~~C~~~~~~ 84 (89)
T PF08205_consen 14 GEEVTLTCSSSGGYPPPQITWYLDGGPVVASN-TT--QSSSPDNGLFTVSSTLTLTPTREDHGKTLTCRASHPA 84 (89)
T ss_dssp TEEEEEEEEEEEEBS-EEEEEEETTCEECEEE-EE--EEEETTTTTEEEEEEEEEETTGGGTTEEEEEEEEETT
T ss_pred ceEEEEEEEeCCeECCeEEEEEECCCceeeee-ee--eeeccCCCcceEEEEEEEEcChHHCCeEEEEEEECCc
Confidence 78999999655 68999999999988771111 10 11111222 22346665444445569999998754
No 310
>cd05878 Ig_Aggrecan_like Immunoglobulin (Ig)-like domain of the aggrecan-like chondroitin sulfate proteoglycan core protein (CSPG). Ig_Aggrecan_like: immunoglobulin (Ig)-like domain of the aggrecan-like chondroitin sulfate proteoglycan core protein (CSPG)s. Included in this group are the Ig domains of other CSPGs: versican, and neurocan. In CSPGs this Ig-like domain is followed by hyaluronan (HA)-binding tandem repeats, and a C-terminal region with epidermal growth factor-like, lectin-like, and complement regulatory protein-like domains. Separating these N- and C-terminal regions is a nonhomologous glycosaminoglycan attachment region. In cartilage, aggrecan forms cartilage link protein stabilized aggregates with hyaluronan (HA). These aggregates contribute to the tissue's load bearing properties. Aggrecan and versican have a wide distribution in connective tissue and extracellular matrices. Neurocan is localized almost exclusively in nervous tissue. Aggregates having other CSPGs substi
Probab=97.99 E-value=3.5e-05 Score=54.86 Aligned_cols=70 Identities=26% Similarity=0.374 Sum_probs=42.6
Q ss_pred CCCcEEEEEEeecCC----------CCeeEEeeC--CEEc----CCCCeeEec-e---EEec----ccceeEEEEEcccc
Q psy15667 16 PGPAVSLKCIASGNP----------TPDIGWTLD--GFEL----PTNNRFVIG-Q---FVSG----HGDVISHVNISHVT 71 (286)
Q Consensus 16 ~G~~~~l~C~~~g~p----------~p~v~W~~~--~~~l----~~~~~~~~~-~---~~~~----~~~~~~~l~I~~~~ 71 (286)
.|++++|.|....++ ...|.|+|. +..+ ..+...... + +... ......+|+|.+++
T Consensus 1 ~G~~V~LpC~~~~~~~~~~~~~~~~~~~i~W~k~~~~~~~~v~~~~~~~~~~~~~f~gR~~~~~~~~~~~~asL~I~~l~ 80 (110)
T cd05878 1 LSSSVLLPCYFTLPPALPPPSNAPESPRIKWTKLSGQKEVTVLVAQDGVVKVGQEYQGRVSLPNYPENRGDASLEISRLR 80 (110)
T ss_pred CCCCEEEeeEeeCCccccccccCCCCCEEEEEEecCCCcEEEEEEECCEEEecccccCeEEeccCCCCCCcEEEEECCCC
Confidence 489999999887654 367999985 2211 011111000 0 0010 01122469999999
Q ss_pred cCCCeEEEEEEEcC
Q psy15667 72 VEDGGEYACVAENR 85 (286)
Q Consensus 72 ~~D~G~Y~C~a~n~ 85 (286)
.+|+|.|.|.+...
T Consensus 81 ~sD~G~Y~C~v~~~ 94 (110)
T cd05878 81 SSDSGVYRCEVMHG 94 (110)
T ss_pred hhhCEEEEEEEEeC
Confidence 99999999998754
No 311
>cd05902 Ig_Neurocan Immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), neurocan. Ig_Neurocan: immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), neurocan. In CSPGs, the Ig-like domain is followed by hyaluronan (HA)-binding tandem repeats, and a C-terminal region with epidermal growth factor-like, lectin-like, and complement regulatory protein-like domains. Separating these N- and C-terminal regions is a nonhomologous glycosaminoglycan attachment region. In cartilage, the CSPG aggrecan (not included in this group) forms cartilage link protein stabilized aggregates with HA. These aggregates contribute to the tissue's load bearing properties. Unlike aggrecan which is widely distributed in connective tissue and extracellular matrices, neurocan is localized almost exclusively in nervous tissue. Aggregates having other CSPGs substituting for aggrecan may contribute to the structural integrity of many differen
Probab=97.94 E-value=3.8e-05 Score=54.46 Aligned_cols=70 Identities=24% Similarity=0.360 Sum_probs=41.3
Q ss_pred CCCcEEEEEEeecCC-------CCeeEEeeCC-----EE----cCCCCeeEece----EEeccc----ceeEEEEEcccc
Q psy15667 16 PGPAVSLKCIASGNP-------TPDIGWTLDG-----FE----LPTNNRFVIGQ----FVSGHG----DVISHVNISHVT 71 (286)
Q Consensus 16 ~G~~~~l~C~~~g~p-------~p~v~W~~~~-----~~----l~~~~~~~~~~----~~~~~~----~~~~~l~I~~~~ 71 (286)
.|++++|.|.-.-.| .+.+.|.|.. .. +..+....... +..... ....+|.|.+++
T Consensus 1 ~~~~v~LpC~~~~~p~~~~~~~~~~I~W~k~~~~~~~~~~~v~v~~~~~~~~~~~y~gRvsl~~~~~~~~~asL~i~nv~ 80 (110)
T cd05902 1 LSSSVLLPCVFTLPPSASSPPEGPRIKWTKLRPASGQKQRPVLVARDNVVRVAKAFQGRVSLPGYPKNRYNASLVLSRLR 80 (110)
T ss_pred CCCcEEEeeEEEcCccccCCCCCCEEEEEEeCCCCCceEEEEEECCCCcEEEchhcccEEEeecCCCCCceEEEEECCCC
Confidence 378999999855333 3689999741 11 11111111000 000000 112469999999
Q ss_pred cCCCeEEEEEEEcC
Q psy15667 72 VEDGGEYACVAENR 85 (286)
Q Consensus 72 ~~D~G~Y~C~a~n~ 85 (286)
.+|+|.|.|.....
T Consensus 81 ~~D~G~Y~C~v~~g 94 (110)
T cd05902 81 YSDSGTYRCEVVLG 94 (110)
T ss_pred HHHCEEEEEEEEEC
Confidence 99999999998763
No 312
>cd00096 Ig Immunoglobulin domain. Ig: immunoglobulin (Ig) domain found in the Ig superfamily. The Ig superfamily is a heterogenous group of proteins, built on a common fold comprised of a sandwich of two beta sheets. Members of this group are components of immunoglobulin, neuroglia, cell surface glycoproteins, such as, T-cell receptors, CD2, CD4, CD8, and membrane glycoproteins, such as, butyrophilin and chondroitin sulfate proteoglycan core protein. A predominant feature of most Ig domains is a disulfide bridge connecting the two beta-sheets with a tryptophan residue packed against the disulfide bond.
Probab=97.93 E-value=6.8e-05 Score=47.61 Aligned_cols=64 Identities=44% Similarity=0.685 Sum_probs=41.3
Q ss_pred EEEEeeecCCCCCeEEEEeCCeeCCCCCCc---eeeecCCCeeeEEEcccCCCCCeEEEEEEEecccc
Q psy15667 212 RVICGVTHGDPPLTIRWLKDGKPLSPRFPV---NVSDLDSFSSLLSINSVSAAHSGEYTCVASNTAAQ 276 (286)
Q Consensus 212 ~l~c~~~~~~p~~~~~W~~~g~~~~~~~~~---~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~N~~g~ 276 (286)
.|.|.+.. .+...+.|++++......... ...........|.|.+++.+|.|.|.|.+.+..+.
T Consensus 2 ~l~C~~~~-~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~ 68 (74)
T cd00096 2 TLTCLASG-PPPPTITWLKNGKPLPSSVLTRVRSSRGTSSGSSTLTISNVTLEDSGTYTCVASNSAGT 68 (74)
T ss_pred EEEEEecC-CCCCcEEEEECCEECCCcccEEeccccCcceeEEEEEECccCcccCcEEEEEEecCcCc
Confidence 45666553 566778888877655332110 00011123567899999999999999999987643
No 313
>cd05901 Ig_Versican Immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), versican. Ig_Versican: immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), versican. In CSPGs, the Ig-like domain is followed by hyaluronan (HA)-binding tandem repeats, and a C-terminal region with epidermal growth factor-like, lectin-like, and complement regulatory protein-like domains. Separating these N- and C-terminal regions is a nonhomologous glycosaminoglycan attachment region. In cartilage, the CSPG aggrecan (not included in this group) forms cartilage link protein stabilized aggregates with HA. These aggregates contribute to the tissue's load bearing properties. Like aggrecan, versican has a wide distribution in connective tissue and extracellular matrices. Aggregates having other CSPGs substituting for aggrecan may contribute to the structural integrity of many different tissues. Members of the vertebrate HPLN (hyaluronan/HA
Probab=97.90 E-value=7.9e-05 Score=53.13 Aligned_cols=24 Identities=21% Similarity=0.458 Sum_probs=20.8
Q ss_pred EEEEEcccccCCCeEEEEEEEcCC
Q psy15667 63 SHVNISHVTVEDGGEYACVAENRA 86 (286)
Q Consensus 63 ~~l~I~~~~~~D~G~Y~C~a~n~~ 86 (286)
.+|.|.+++.+|+|.|.|+.....
T Consensus 79 asL~i~~v~~sD~G~Y~C~V~~g~ 102 (117)
T cd05901 79 ASLTIVKLRASDAGVYRCEVMHGI 102 (117)
T ss_pred eEEEEcccccccCEEEEEEEEECC
Confidence 469999999999999999987643
No 314
>cd07700 IgV_CD8_beta Immunoglobulin (Ig) like domain of CD8 beta chain. IgV_CD8_beta: immunoglobulin (Ig)-like domain in CD8 beta. The CD8 glycoprotein plays an essential role in the control of T-cell selection, maturation and the T-cell receptor (TCR)-mediated response to peptide antigen. CD8 is comprised of alpha and beta subunits and is expressed as either an alpha/alpha or alpha/beta dimer. Both dimeric isoforms can serve as a coreceptor for T cell activation and differentiation, however they have distinct physiological roles, different cellular distributions, unique binding partners etc. Each CD8 subunit is comprised of an extracellular domain containing a V-type Ig-like domain, a single pass transmembrane portion and a short intracellular domain.
Probab=97.87 E-value=0.00011 Score=52.06 Aligned_cols=23 Identities=35% Similarity=0.561 Sum_probs=20.3
Q ss_pred eeeEEEcccCCCCCeEEEEEEEe
Q psy15667 250 SSLLSINSVSAAHSGEYTCVASN 272 (286)
Q Consensus 250 ~~~L~i~~v~~~d~G~Y~C~a~N 272 (286)
...|.|.+++.+|+|.|.|...+
T Consensus 71 ~~~L~I~~~~~~Dsg~YyCa~~~ 93 (107)
T cd07700 71 RYRLHINRVKPEDSGTYFCMTVG 93 (107)
T ss_pred EEEEEECCCCHHHCEEEEEeEcC
Confidence 45799999999999999999764
No 315
>cd04981 IgV_H Immunoglobulin (Ig) heavy chain (H), variable (V) domain. IgV_H: Immunoglobulin (Ig) heavy chain (H), variable (V) domain. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. In Ig, each chain is composed of one variable domain (IgV) and one or more constant domains (IgC); these names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. There are five types of heavy chains (alpha, gamma, delta, epsilon, and mu), which determine the type of immunoglobulin: IgA, IgG, IgD, IgE, and IgM, respectively. In higher vertebrates, there are two types of light chain, designated kappa and lambda, which can associate with any of the heavy chains. This family includes alpha, gamma, delta, epsilon, and mu heavy chains.
Probab=97.87 E-value=8.3e-05 Score=53.56 Aligned_cols=74 Identities=22% Similarity=0.358 Sum_probs=47.1
Q ss_pred ccccccccCCCcEEEEEEeecCC--CCeeEEeeCC--E-E--c---CC-----------CCeeEeceEEecccceeEEEE
Q psy15667 8 SFIEQTLQPGPAVSLKCIASGNP--TPDIGWTLDG--F-E--L---PT-----------NNRFVIGQFVSGHGDVISHVN 66 (286)
Q Consensus 8 ~~~~~~~~~G~~~~l~C~~~g~p--~p~v~W~~~~--~-~--l---~~-----------~~~~~~~~~~~~~~~~~~~l~ 66 (286)
.+....+.+|++|+|.|...+.- ...+.|+|.. + + | .. ..|+..... .......|.
T Consensus 3 ~~~~~~v~~G~~vtL~C~~~~~~~~~~~~~WYkQ~~g~~p~~l~~~~~~~~~~~~~~~~~~rf~~~~~---~~~~~~~L~ 79 (117)
T cd04981 3 ESGPGLVKPGQSLKLSCKASGFTFTSYGVNWVRQAPGKGLEWIGFINPGGGETYYADSVKGRFTITRD---TSKSTVYLQ 79 (117)
T ss_pred cCCCeEEcCCCCEEEEEEEeCCCcccceEEEEEECCCCCcEEEEEEecCCCceEeCcccCCcEEEEEE---ccCCEEEEE
Confidence 45567889999999999876432 3458899742 2 1 1 00 123322110 111223599
Q ss_pred EcccccCCCeEEEEEEEc
Q psy15667 67 ISHVTVEDGGEYACVAEN 84 (286)
Q Consensus 67 I~~~~~~D~G~Y~C~a~n 84 (286)
|.++..+|+|.|.|.+..
T Consensus 80 I~~~~~~Dsa~YyCa~~~ 97 (117)
T cd04981 80 LNSLTPEDTAVYYCARGL 97 (117)
T ss_pred ECCCCHHHCEEEEEEEEc
Confidence 999999999999997654
No 316
>cd05712 Ig_Siglec_N Immunoglobulin (Ig) domain at the N terminus of Siglec (sialic acid-binding Ig-like lectins). Ig_Siglec_N: immunoglobulin (Ig) domain at the N terminus of Siglec (sialic acid-binding Ig-like lectins). Siglec refers to a structurally related protein family that specifically recognizes sialic acid in oligosaccharide chains of glycoproteins and glycolipids. Siglecs are type I transmembrane proteins, organized as an extracellular module composed of Ig-like domains (an N-terminal variable set of Ig-like carbohydrate recognition domains, and 1 to 16 constant Ig-like domains), followed by transmembrane and short cytoplasmic domains. Human siglecs are classified into two subgroups, one subgroup is comprised of sialoadhesin (Siglec-1), CD22 (Siglec-2), and MAG, the other subgroup is comprised of CD33-related Siglecs which include CD33 (Siglec-3) and human Siglecs 5-11.
Probab=97.86 E-value=8.8e-05 Score=53.64 Aligned_cols=74 Identities=22% Similarity=0.192 Sum_probs=46.3
Q ss_pred ccccccccCCCcEEEEEEeecCC------CCeeEEeeCCEE------c--CC---------CCeeEeceEEecccceeEE
Q psy15667 8 SFIEQTLQPGPAVSLKCIASGNP------TPDIGWTLDGFE------L--PT---------NNRFVIGQFVSGHGDVISH 64 (286)
Q Consensus 8 ~~~~~~~~~G~~~~l~C~~~g~p------~p~v~W~~~~~~------l--~~---------~~~~~~~~~~~~~~~~~~~ 64 (286)
.+.++.+.+|++|+|.|.-...+ ...+.|++.... + .. .+|+.. .........+
T Consensus 5 ~P~~v~~~~G~~VtL~C~f~~~~~~~~~~~~~~~Wykq~~g~~~~~~~~~~~~~~~~~~~f~gR~~~---~~~~~~~~~s 81 (119)
T cd05712 5 MPKSVSVQEGLCVLIPCSFSYPADWPVSNGVHGIWYKGHPYPKNRPPVATNNRSRLVHESTRGRFRL---LGDLGKKNCS 81 (119)
T ss_pred CCCEEEEeccccEEEEEEeeCcccccCCCceEEEEEeCCCCCCCCCcEEEcCCCccccccccccEEE---ecCCCCCEEE
Confidence 45667899999999999754221 245889985311 0 00 012211 0001122346
Q ss_pred EEEcccccCCCeEEEEEEEc
Q psy15667 65 VNISHVTVEDGGEYACVAEN 84 (286)
Q Consensus 65 l~I~~~~~~D~G~Y~C~a~n 84 (286)
|.|.+++.+|+|.|.|....
T Consensus 82 L~I~~l~~~Dsg~Y~C~~~~ 101 (119)
T cd05712 82 LLISDAQPEDSGKYFFRVEL 101 (119)
T ss_pred EEEccCChhhCeEEEEEEEc
Confidence 99999999999999998765
No 317
>cd05889 Ig1_DNAM-1_like First immunoglobulin (Ig) domain of DNAX accessory molecule 1 (DNAM-1, also known as CD226) and similar proteins. Ig1_DNAM-1_like: domain similar to the first immunoglobulin (Ig) domain of DNAX accessory molecule 1 (DNAM-1, also known as CD226). DNAM-1 is a transmembrane protein having two Ig-like domains. It is an adhesion molecule which plays a part in tumor-directed cytotoxicity and adhesion in natural killer (NK) cells and T lymphocytes. It has been shown to regulate the NK cell killing of several tumor types, including myeloma cells and ovarian carcinoma cells. DNAM-1 interacts specifically with poliovirus receptor (PVR; CD155) and nectin -2 (CD211), other members of the Ig superfamily. DNAM-1 is expressed in most peripheral T cells, NK cells, monocytes and a subset of B lymphocytes.
Probab=97.86 E-value=5e-05 Score=52.43 Aligned_cols=68 Identities=16% Similarity=0.173 Sum_probs=38.8
Q ss_pred CcEEEEEEeec-CCCCeeEEeeCCE----EcC-----CCCeeEe--ceEEeccc--ceeEEEEEcccccCCCeEEEEEEE
Q psy15667 18 PAVSLKCIASG-NPTPDIGWTLDGF----ELP-----TNNRFVI--GQFVSGHG--DVISHVNISHVTVEDGGEYACVAE 83 (286)
Q Consensus 18 ~~~~l~C~~~g-~p~p~v~W~~~~~----~l~-----~~~~~~~--~~~~~~~~--~~~~~l~I~~~~~~D~G~Y~C~a~ 83 (286)
++++|.|.... ....+|+|.|... .+. .+..+.. ..++...+ ..-.+|.|.+++.+|+|.|+|...
T Consensus 1 ~~vtL~C~~~~~~~~~qV~W~k~~~~~~~~iavy~~~~g~~~~~~y~~Rv~f~~~~~~d~sI~i~nvt~~D~G~Y~C~~~ 80 (96)
T cd05889 1 EKMKLECVYPKTGVLIQVSWTKHNGSHKENIAVYHPIYGMHIEDKYRGRVYFLNSTREDMSLSFNNATEEDVGLYCCSLV 80 (96)
T ss_pred CCEEEEeEcCCCCcEEEEEEEEcCCCCCceEEEEECCCCCEECccccCeEEEecCCCCccEEEEcCCCcccCEEEEEEEE
Confidence 57899998653 3456889998432 110 0111100 00000010 011358999999999999999876
Q ss_pred cC
Q psy15667 84 NR 85 (286)
Q Consensus 84 n~ 85 (286)
+-
T Consensus 81 t~ 82 (96)
T cd05889 81 TY 82 (96)
T ss_pred eC
Confidence 53
No 318
>cd05768 IgC_CH4 CH4 domain (fourth constant Ig domain of the heavy chain) in immunoglobulin. IgC_CH4: The fourth immunoglobulin constant domain (IgC), of immunoglobulin (Ig) heavy chains. This domain is found on the Fc fragment. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. There are two types of light chains: kappa and lambda; each composed of a constant domain and a variable domain. There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are modular proteins, in which the variable and constant domains have clear, conserved sequence patterns.
Probab=97.86 E-value=8.2e-05 Score=52.10 Aligned_cols=79 Identities=15% Similarity=0.308 Sum_probs=45.3
Q ss_pred eccccccccCCCcEEEEEEeecCCCC--eeEEeeCCEEcCCCCeeEeceEEec--ccc--eeEEEEEcccccCCCeEEEE
Q psy15667 7 YSFIEQTLQPGPAVSLKCIASGNPTP--DIGWTLDGFELPTNNRFVIGQFVSG--HGD--VISHVNISHVTVEDGGEYAC 80 (286)
Q Consensus 7 ~~~~~~~~~~G~~~~l~C~~~g~p~p--~v~W~~~~~~l~~~~~~~~~~~~~~--~~~--~~~~l~I~~~~~~D~G~Y~C 80 (286)
+.+....+..|+.++|.|.+.|..++ .++|++||+++.............. ++. ....|.|..-...+...|+|
T Consensus 6 ~~p~~~~~~~~~~~tL~C~a~gFyP~~i~v~W~k~g~~~~~~~~~~~~~~~~~~~dgTy~~~s~L~v~~~~w~~~~~ytC 85 (102)
T cd05768 6 LPPPSEELSLQETATLTCLVKGFSPSDIFVKWLQNGQPLSKQKYVTTAPMQEPGGNESYFLYSKLTVSAEDWNAGDVFTC 85 (102)
T ss_pred eCcChHHhCcCCceEEEEEEeeEeCCCCEEEEEECCEECCcccccccCcccccCCCCeEEEEEEEEEcHHHhcCCCcEEE
Confidence 34444456678999999999995333 5799999998754321110000000 121 12335554443345568999
Q ss_pred EEEcC
Q psy15667 81 VAENR 85 (286)
Q Consensus 81 ~a~n~ 85 (286)
.+.-.
T Consensus 86 ~V~H~ 90 (102)
T cd05768 86 VVGHE 90 (102)
T ss_pred EeEeC
Confidence 88654
No 319
>cd07694 Ig2_CD4 Second immunoglobulin (Ig) domain of CD4. Ig2_CD4; second immunoglobulin (Ig) domain of CD4. CD4 and CD8 are the two primary co-receptor proteins found on the surface of T cells, and the presence of either CD4 or CD8 determines the function of the T cell. CD4 is found on helper T cells, where it is required for the binding of MHC (major histocompatibility complex) class II molecules, while CD8 is found on cytotoxic T cells, where it is required for the binding of MHC class I molecules. CD4 contains four immunoglobulin domains, with the first three included in this hierarchy. The fourth domain has a general Ig architecture, but has slight topological changes in the arrangement of beta strands relative to the other structures in this family and is not specifically included in the hierarchy.
Probab=97.81 E-value=8.3e-05 Score=49.57 Aligned_cols=62 Identities=18% Similarity=0.365 Sum_probs=43.1
Q ss_pred ccccCCCcEEEEEEeecCCC--CeeEEeeCCEEcCCCCeeEeceEEecccceeEEEEEcccccCCCeEEEEEEEc
Q psy15667 12 QTLQPGPAVSLKCIASGNPT--PDIGWTLDGFELPTNNRFVIGQFVSGHGDVISHVNISHVTVEDGGEYACVAEN 84 (286)
Q Consensus 12 ~~~~~G~~~~l~C~~~g~p~--p~v~W~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~I~~~~~~D~G~Y~C~a~n 84 (286)
-.+..|++++|+|+....+. +.|.|..-+...-. + ..++. .+|.+.++...|+|.++|.+.-
T Consensus 9 ~~lL~G~sLtLtl~~~s~s~p~~~i~w~~P~n~~~~-----~----~~~~~--ktL~~~qv~~qdSG~WtC~V~~ 72 (88)
T cd07694 9 DHVLSGTNLTLTLHGSSNSLPAFKVEWRGPGNKSKQ-----I----LNQDK--KTLNLVQLGPNDSGTWDCIVSV 72 (88)
T ss_pred CeeecCCcEEEEEecCCCCCCCccEEEeCCCCccce-----e----ccCCc--cEEEeceeCcccCCEEEEEEEE
Confidence 36789999999999876444 49999753322110 0 00111 2588999999999999999864
No 320
>cd05712 Ig_Siglec_N Immunoglobulin (Ig) domain at the N terminus of Siglec (sialic acid-binding Ig-like lectins). Ig_Siglec_N: immunoglobulin (Ig) domain at the N terminus of Siglec (sialic acid-binding Ig-like lectins). Siglec refers to a structurally related protein family that specifically recognizes sialic acid in oligosaccharide chains of glycoproteins and glycolipids. Siglecs are type I transmembrane proteins, organized as an extracellular module composed of Ig-like domains (an N-terminal variable set of Ig-like carbohydrate recognition domains, and 1 to 16 constant Ig-like domains), followed by transmembrane and short cytoplasmic domains. Human siglecs are classified into two subgroups, one subgroup is comprised of sialoadhesin (Siglec-1), CD22 (Siglec-2), and MAG, the other subgroup is comprised of CD33-related Siglecs which include CD33 (Siglec-3) and human Siglecs 5-11.
Probab=97.80 E-value=0.00064 Score=49.09 Aligned_cols=25 Identities=20% Similarity=0.174 Sum_probs=21.3
Q ss_pred CeeeEEEcccCCCCCeEEEEEEEec
Q psy15667 249 FSSLLSINSVSAAHSGEYTCVASNT 273 (286)
Q Consensus 249 ~~~~L~i~~v~~~d~G~Y~C~a~N~ 273 (286)
....|.|.+++.+|+|.|.|.....
T Consensus 78 ~~~sL~I~~l~~~Dsg~Y~C~~~~~ 102 (119)
T cd05712 78 KNCSLLISDAQPEDSGKYFFRVELG 102 (119)
T ss_pred CEEEEEEccCChhhCeEEEEEEEcC
Confidence 3568999999999999999987553
No 321
>cd05720 Ig_CD8_alpha Immunoglobulin (Ig) like domain of CD8 alpha chain. Ig_CD8_alpha: immunoglobulin (Ig)-like domain in CD8 alpha. The CD8 glycoprotein plays an essential role in the control of T-cell selection, maturation and the T-cell receptor (TCR)-mediated response to peptide antigen. CD8 is comprised of alpha and beta subunits and is expressed as either an alphaalpha or alphabeta dimer. Both dimeric isoforms can serve as a coreceptor for T cell activation and differentiation, however they have distinct physiological roles, different cellular distributions, unique binding partners etc. Each CD8 subunit is comprised of an extracellular domain containing a v-type Ig-like domain, a single pass transmembrane portion and a short intracellular domain. The Ig domain of CD8 alpha binds to antibodies.
Probab=97.77 E-value=0.00022 Score=50.15 Aligned_cols=24 Identities=21% Similarity=0.439 Sum_probs=20.7
Q ss_pred CeeeEEEcccCCCCCeEEEEEEEe
Q psy15667 249 FSSLLSINSVSAAHSGEYTCVASN 272 (286)
Q Consensus 249 ~~~~L~i~~v~~~d~G~Y~C~a~N 272 (286)
....|.|.+++.+|+|.|.|...+
T Consensus 67 ~~~~L~I~~~~~sDsgtY~Ca~~~ 90 (104)
T cd05720 67 NSFVLTLKNFQKENEGYYFCSVAS 90 (104)
T ss_pred CEEEEEECCCCHHHCEEEEEEEcc
Confidence 345799999999999999998764
No 322
>smart00407 IGc1 Immunoglobulin C-Type.
Probab=97.75 E-value=0.00029 Score=46.29 Aligned_cols=65 Identities=25% Similarity=0.481 Sum_probs=40.4
Q ss_pred cEEEEEEeecC-CC-CeeEEeeCCEEcCCCCeeEeceEEe-cccc--eeEEEEEcccccCCCeEEEEEEEcC
Q psy15667 19 AVSLKCIASGN-PT-PDIGWTLDGFELPTNNRFVIGQFVS-GHGD--VISHVNISHVTVEDGGEYACVAENR 85 (286)
Q Consensus 19 ~~~l~C~~~g~-p~-p~v~W~~~~~~l~~~~~~~~~~~~~-~~~~--~~~~l~I~~~~~~D~G~Y~C~a~n~ 85 (286)
.++|.|.+.|. |+ ..++|+|||+++..+.. ...... ..+. ..+.|.|.....++...|+|.+...
T Consensus 1 ~~~L~C~a~gf~P~~i~v~W~k~g~~~~~~~~--~~~~~~~~~gt~~~~s~L~v~~~~~~~~~~~tC~V~H~ 70 (75)
T smart00407 1 KATLVCLVSGFYPPDITVTWLRNGQEVTSGVS--TTDPLKNSDGTYFLSSYLTVSASTWESGDTYTCQVTHE 70 (75)
T ss_pred CeEEEEEEEeEeCCCCEEEEEECCEECCCCEE--ECceEECCCCCEEEEEEEEEccccCCCCCEEEEEEEEc
Confidence 36899999985 55 58999999987543321 111111 1221 1234666665667778999998754
No 323
>cd05888 Ig1_Nectin-4_like Frst immunoglobulin (Ig) domain of nectin-4 (also known as poliovirus receptor related protein 4, or as LNIR receptor) and similar proteins. Ig1_Nectin-4_like: domain similar to the first immunoglobulin (Ig) domain of nectin-4 (also known as poliovirus receptor related protein 4, or as LNIR receptor). Nectin-4 belongs to the nectin family, which is comprised of four transmembrane glycoproteins (nectins-1 through -4). Nectins are synaptic cell adhesion molecules (CAMs) which participate in adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. For example nectin-4 trans-interacts with nectin-1. Nectin-4 has also been shown to interact with the actin filament-binding protein, afadin. Unlike the other nectins, which are widely expressed in adult tissues, nectin-4 is mainly expressed during embryogenesis, and is not detected in normal adult
Probab=97.73 E-value=0.00017 Score=50.41 Aligned_cols=22 Identities=18% Similarity=0.418 Sum_probs=20.1
Q ss_pred EEEEEcccccCCCeEEEEEEEc
Q psy15667 63 SHVNISHVTVEDGGEYACVAEN 84 (286)
Q Consensus 63 ~~l~I~~~~~~D~G~Y~C~a~n 84 (286)
.+|+|.+++.+|+|.|.|.+.+
T Consensus 64 ~sL~I~nv~~sD~GtY~C~v~~ 85 (100)
T cd05888 64 GALILRNAVQADEGKYKCRVIT 85 (100)
T ss_pred eEEEEecCccccceEEEEEEEe
Confidence 3599999999999999999876
No 324
>cd05887 Ig1_Nectin-3_like First immunoglobulin (Ig) domain of nectin-3 (also known as poliovirus receptor related protein 3) and similar proteins. Ig1_Nectin-3_like: domain similar to the first immunoglobulin (Ig) domain of nectin-3 (also known as poliovirus receptor related protein 3). Nectin-3 belongs to the nectin family comprised of four transmembrane glycoproteins (nectins-1 through -4). Nectins are synaptic cell adhesion molecules (CAMs) which participate in adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. For example, during spermatid development, the nectin-3,-2 trans-interaction is required for the formation of Sertoli cell-spermatid junctions in testis, and during morphogenesis of the ciliary body, the nectin-3,-1 trans-interaction is important for apex-apex adhesion between the pigment and non-pigment layers of the ciliary epithelia. Nectins also
Probab=97.70 E-value=0.00013 Score=50.30 Aligned_cols=63 Identities=22% Similarity=0.284 Sum_probs=38.2
Q ss_pred CcEEEEEEeecC-CCCeeEEeeCC----EEcC-----CC--------CeeEeceEEecccceeEEEEEcccccCCCeEEE
Q psy15667 18 PAVSLKCIASGN-PTPDIGWTLDG----FELP-----TN--------NRFVIGQFVSGHGDVISHVNISHVTVEDGGEYA 79 (286)
Q Consensus 18 ~~~~l~C~~~g~-p~p~v~W~~~~----~~l~-----~~--------~~~~~~~~~~~~~~~~~~l~I~~~~~~D~G~Y~ 79 (286)
++++|.|.-... ...+|+|.|.. ..+. .+ +|..... .... -.+|.|.+++.+|+|.|.
T Consensus 1 ~~vtL~C~~~~~~~~~qV~W~k~~~~~~~~ia~y~~~~g~~~~~~y~~Rv~~~~--~~~~--d~sl~i~nv~~~D~G~Y~ 76 (96)
T cd05887 1 KNVTLKCRIQVNETITQSSWEKIHGKGSVTLAVHHPMYGISIQPDYQGRVSFKN--YSLL--DATIMLENVGFSDIGVYI 76 (96)
T ss_pred CCEEEEEEecCCCcEEEEEEEEcCCCCcEEEEEEcccCCcccChhhCCcEEEcC--CCCC--ccEEEEeCCCccccEEEE
Confidence 478999987643 34589998842 1110 01 1211100 0011 235899999999999999
Q ss_pred EEEEc
Q psy15667 80 CVAEN 84 (286)
Q Consensus 80 C~a~n 84 (286)
|++.+
T Consensus 77 C~v~t 81 (96)
T cd05887 77 CKAVT 81 (96)
T ss_pred EEEEe
Confidence 99754
No 325
>cd07692 Ig_CD3_epsilon Immunoglobulin (Ig)-like domain of CD3 epsilon chain. Ig_CD3_epsilon; immunoglobulin (Ig)-like domain of CD3 epsilon chain. CD3 is a T cell surface receptor that is associated with alpha/beta T cell receptors (TCRs). The CD3 complex consists of one gamma, one delta, two epsilon, and two zeta chains. The CD3 subunits form heterodimers as gamma/epsilon, delta/epsilon, and zeta/zeta. The gamma, delta, and epsilon chains each contain an extracellular Ig domain, whereas the extracellular domains of the zeta chains are very small and have unknown structure. The CD3 domain participates in intracellular signalling once the TCR has bound an MHC/antigen complex.
Probab=97.66 E-value=0.00027 Score=44.25 Aligned_cols=58 Identities=22% Similarity=0.340 Sum_probs=35.1
Q ss_pred CCeEEEEEeeecCCCCCeEEEEeCCeeCCCCCCceeeecCCCeeeEEEcccCCCCCeEEEEEEEecccceeeEEEEEE
Q psy15667 208 GARTRVICGVTHGDPPLTIRWLKDGKPLSPRFPVNVSDLDSFSSLLSINSVSAAHSGEYTCVASNTAAQARYSSKLQV 285 (286)
Q Consensus 208 g~~~~l~c~~~~~~p~~~~~W~~~g~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~N~~g~~~~~~~L~V 285 (286)
|..+.|+|... ...+.|.+++..+... ...+.+.+-. +++|.|.|.+.+.. +.+.|..
T Consensus 7 GTtVtlTCP~~----~~~i~W~~n~~~~~g~-----------~~~~~~~~~~-e~~G~Y~C~~~~~~----~~lYLKa 64 (65)
T cd07692 7 GTTVTVTCPLS----GDDIKWKKNDQVSQGS-----------DEKYLSLNHF-SSSGYYHCTADNAN----HTLYLKA 64 (65)
T ss_pred ccEEEEECCCC----CCCceEEeCCccCCCC-----------CceEEeeccC-CCCceEEEEeCCCc----EEEEEEc
Confidence 45566666321 2238999998655431 1234455555 89999999997443 5555543
No 326
>cd05772 IgC_SIRP Signal-regulatory protein (SIRP) immunoglobulin-like domain. IgC_SIRP: Immunoglobulin-like domain of signal-regulatory proteins (SIRP); the signal-regulatory proteins (SIRP) are Ig-like cell surface receptors detected in hematopoietic and non-hematopoietic cells. While their extracellular domains are similar, SIRP are classified as alpha or beta based on the length of the intracytoplasmic domain. Those having a 110- to 113-amino acid tail are classified as SIRP-alpha, and those having a 5-amino acid tail as SIRP-beta. SIRP-alpha and SIRP-beta molecules are thought to have complementary roles in signal regulation: SIRP-alpha inhibit signalling via their immunoreceptor tyrosine (IT)-based inhibition motifs while SIRP-beta are activating. SIRP-beta lack the cytoplasmic domainof SIRP-alpha, and associate with at least one other transmembrane protein (DAP-12 or KARAP). The IT-based activation motifs within DAP-12's cytoplasmic domain may link SIRP-beta to the activating
Probab=97.60 E-value=0.00087 Score=47.64 Aligned_cols=71 Identities=25% Similarity=0.453 Sum_probs=43.0
Q ss_pred cccccCCCcEEEEEEeecC-CC-CeeEEeeCCEEcCCCCeeEeceEEecccce---eEEEEEcccccCCCe-EEEEEEEc
Q psy15667 11 EQTLQPGPAVSLKCIASGN-PT-PDIGWTLDGFELPTNNRFVIGQFVSGHGDV---ISHVNISHVTVEDGG-EYACVAEN 84 (286)
Q Consensus 11 ~~~~~~G~~~~l~C~~~g~-p~-p~v~W~~~~~~l~~~~~~~~~~~~~~~~~~---~~~l~I~~~~~~D~G-~Y~C~a~n 84 (286)
...+..|+.++|.|.+.|. |. ..++|++||+.+.....-. ...++++. .+.|.+.. ...|.| .|+|.+..
T Consensus 15 ~~~~~~g~~~tL~C~a~gF~P~~i~v~W~kng~~~~~~~~~~---~p~~d~~ty~~~S~L~~~~-~~~d~~~~ytC~V~H 90 (111)
T cd05772 15 SGRANPGQSVNFTCSAHGFSPRDITVKWLKNGNELSAEQPNI---TPEGDSVSYNVTSTVQVKL-TEDDVHSQVTCEVQH 90 (111)
T ss_pred hhccCCCCCEEEEEEEeeEeCCCCEEEEEECCEECcccccce---eeCCCCCcEEEEEEEEEEC-ccccccCceEEEEEe
Confidence 4456678999999999984 54 5899999999985421110 00111111 22354443 334444 69998876
Q ss_pred C
Q psy15667 85 R 85 (286)
Q Consensus 85 ~ 85 (286)
.
T Consensus 91 ~ 91 (111)
T cd05772 91 R 91 (111)
T ss_pred C
Confidence 4
No 327
>PF08205 C2-set_2: CD80-like C2-set immunoglobulin domain ; InterPro: IPR013162 The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulphide bonds. There are two types of light chains: kappa and lambda, each composed of a constant domain (CL) and a variable domain (VL). There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are highly modular proteins, in which the variable and constant domains have clear, conserved sequence patterns. The domains in Ig and Ig-like molecules are grouped into four types: V-set (variable; IPR013106 from INTERPRO), C1-set (constant-1; IPR003597 from INTERPRO), C2-set (constant-2; IPR008424 from INTERPRO) and I-set (intermediate; IPR013098 from INTERPRO) []. Structural studies have shown that these domains share a common core Greek-key beta-sandwich structure, with the types differing in the number of strands in the beta-sheets as well as in their sequence patterns [, ]. Immunoglobulin-like domains that are related in both sequence and structure can be found in several diverse protein families. Ig-like domains are involved in a variety of functions, including cell-cell recognition, cell-surface receptors, muscle structure and the immune system []. This entry represents the C2-set type domains found in the T-cell antigen CD80, as well as in related proteins. CD80 (B7-1) is a glycoprotein expressed on antigen-presenting cells []. The shared ligands on CD80 and CD86 (B7-2) deliver the co-stimulatory signal through CD28 and CTLA-4 on T-cells, where CD28 augments the T-cell response and CTLA-4 attenuates it [].; PDB: 3S58_A 3O3U_N 3CJJ_A 3S59_A 2PF6_B 2PET_A 3ALP_A 3SKU_D 3U83_A 3U82_B ....
Probab=97.60 E-value=0.0004 Score=47.26 Aligned_cols=69 Identities=29% Similarity=0.507 Sum_probs=44.2
Q ss_pred CCeEEEEEeeecCCCCCeEEEEeCCeeCCCCCCceeee-cCC---CeeeEEEcccCCCCCeEEEEEEEecccc
Q psy15667 208 GARTRVICGVTHGDPPLTIRWLKDGKPLSPRFPVNVSD-LDS---FSSLLSINSVSAAHSGEYTCVASNTAAQ 276 (286)
Q Consensus 208 g~~~~l~c~~~~~~p~~~~~W~~~g~~~~~~~~~~~~~-~~~---~~~~L~i~~v~~~d~G~Y~C~a~N~~g~ 276 (286)
|+.+.+.|.+..+.|++.++|+.++..+.......... ... ....|.+..-...+...++|.|.|..-.
T Consensus 14 ~~~~~~~C~s~~~~P~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~S~l~~~~~~~~~~~~~~C~~~~~~~~ 86 (89)
T PF08205_consen 14 GEEVTLTCSSSGGYPPPQITWYLDGGPVVASNTTQSSSPDNGLFTVSSTLTLTPTREDHGKTLTCRASHPALS 86 (89)
T ss_dssp TEEEEEEEEEEEEBS-EEEEEEETTCEECEEEEEEEEETTTTTEEEEEEEEEETTGGGTTEEEEEEEEETTCC
T ss_pred ceEEEEEEEeCCeECCeEEEEEECCCceeeeeeeeeeccCCCcceEEEEEEEEcChHHCCeEEEEEEECCccC
Confidence 56788888888888999999999887662111001011 111 1345666655566789999999998644
No 328
>cd07692 Ig_CD3_epsilon Immunoglobulin (Ig)-like domain of CD3 epsilon chain. Ig_CD3_epsilon; immunoglobulin (Ig)-like domain of CD3 epsilon chain. CD3 is a T cell surface receptor that is associated with alpha/beta T cell receptors (TCRs). The CD3 complex consists of one gamma, one delta, two epsilon, and two zeta chains. The CD3 subunits form heterodimers as gamma/epsilon, delta/epsilon, and zeta/zeta. The gamma, delta, and epsilon chains each contain an extracellular Ig domain, whereas the extracellular domains of the zeta chains are very small and have unknown structure. The CD3 domain participates in intracellular signalling once the TCR has bound an MHC/antigen complex.
Probab=97.59 E-value=0.00015 Score=45.44 Aligned_cols=52 Identities=25% Similarity=0.409 Sum_probs=35.0
Q ss_pred cCCCcEEEEEEeecCCCCeeEEeeCCEEcCCCCeeEeceEEecccceeEEEEEcccccCCCeEEEEEEEcC
Q psy15667 15 QPGPAVSLKCIASGNPTPDIGWTLDGFELPTNNRFVIGQFVSGHGDVISHVNISHVTVEDGGEYACVAENR 85 (286)
Q Consensus 15 ~~G~~~~l~C~~~g~p~p~v~W~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~I~~~~~~D~G~Y~C~a~n~ 85 (286)
..|.+|+|+|-..+ ..+.|.+|+..+..+... +.+.+-. +++|.|+|.+.+.
T Consensus 5 isGTtVtlTCP~~~---~~i~W~~n~~~~~g~~~~---------------~~~~~~~-e~~G~Y~C~~~~~ 56 (65)
T cd07692 5 ISGTTVTVTCPLSG---DDIKWKKNDQVSQGSDEK---------------YLSLNHF-SSSGYYHCTADNA 56 (65)
T ss_pred EeccEEEEECCCCC---CCceEEeCCccCCCCCce---------------EEeeccC-CCCceEEEEeCCC
Confidence 46899999994332 239999998666542221 2233444 8899999999764
No 329
>cd05847 IgC_CH2_IgE CH2 domain (second constant Ig domain of the heavy chain) in immunoglobulin E (IgE). IgC_CH2_IgE: The second constant domain of the heavy chain of immunoglobulin E (IgE). The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. There are two types of light chains: kappa and lambda; each composed of a constant domain and a variable domain. There are five types of heavy chains: alpha, delta, epsilon, gamma, and mu, all consisting of a variable domain (VH) and three (in alpha, delta, and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). The different classes of antibodies vary in their heavy chains; the IgE class has the epsilon type. This domain (Cepsilon2) of IgE is in place of the flexible hinge region found in IgG.
Probab=97.58 E-value=0.00085 Score=46.15 Aligned_cols=79 Identities=18% Similarity=0.311 Sum_probs=46.4
Q ss_pred eccccccccCCCcEEEEEEeecC-CC-CeeEEeeCCEEcCCCCeeEeceEEecccce---eEEEEEcccccCCCeEEEEE
Q psy15667 7 YSFIEQTLQPGPAVSLKCIASGN-PT-PDIGWTLDGFELPTNNRFVIGQFVSGHGDV---ISHVNISHVTVEDGGEYACV 81 (286)
Q Consensus 7 ~~~~~~~~~~G~~~~l~C~~~g~-p~-p~v~W~~~~~~l~~~~~~~~~~~~~~~~~~---~~~l~I~~~~~~D~G~Y~C~ 81 (286)
+.+........+.++|.|.+.|. |. -.|+|.+||..+...... . ......++. ...|.|..-...+...|+|.
T Consensus 4 ~~ps~~~~~~~~~~~L~C~a~gFyP~~I~vtW~~dg~~~~~~~~~-s-~~~~~~~~Ty~~~S~L~v~~~~w~~~~~ytC~ 81 (94)
T cd05847 4 LHSSCCDTGTSETIQLLCLISGYTPGTIEVEWLVDGQVATLVAAS-T-APQKEEGSTFSTTSELNVTQEDWKSGKTYTCK 81 (94)
T ss_pred ECcChHHcCCCCCEEEEEEEEeEECCCCEEEEEECCEECcCceee-c-ccEECCCCcEEEEEEEEEchHHhcCCCeEEEE
Confidence 33444444456779999999994 44 578999999987432110 0 001112222 23355554444466799999
Q ss_pred EEcCCE
Q psy15667 82 AENRAG 87 (286)
Q Consensus 82 a~n~~g 87 (286)
+.....
T Consensus 82 V~H~~~ 87 (94)
T cd05847 82 VTHQGT 87 (94)
T ss_pred EEECCe
Confidence 987543
No 330
>cd04981 IgV_H Immunoglobulin (Ig) heavy chain (H), variable (V) domain. IgV_H: Immunoglobulin (Ig) heavy chain (H), variable (V) domain. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. In Ig, each chain is composed of one variable domain (IgV) and one or more constant domains (IgC); these names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. There are five types of heavy chains (alpha, gamma, delta, epsilon, and mu), which determine the type of immunoglobulin: IgA, IgG, IgD, IgE, and IgM, respectively. In higher vertebrates, there are two types of light chain, designated kappa and lambda, which can associate with any of the heavy chains. This family includes alpha, gamma, delta, epsilon, and mu heavy chains.
Probab=97.58 E-value=0.0015 Score=47.02 Aligned_cols=22 Identities=23% Similarity=0.462 Sum_probs=19.7
Q ss_pred eeEEEcccCCCCCeEEEEEEEe
Q psy15667 251 SLLSINSVSAAHSGEYTCVASN 272 (286)
Q Consensus 251 ~~L~i~~v~~~d~G~Y~C~a~N 272 (286)
..|.|.++..+|+|.|.|.+..
T Consensus 76 ~~L~I~~~~~~Dsa~YyCa~~~ 97 (117)
T cd04981 76 VYLQLNSLTPEDTAVYYCARGL 97 (117)
T ss_pred EEEEECCCCHHHCEEEEEEEEc
Confidence 4699999999999999998764
No 331
>KOG1480|consensus
Probab=97.56 E-value=5.2e-05 Score=69.01 Aligned_cols=68 Identities=29% Similarity=0.522 Sum_probs=52.3
Q ss_pred CCCCCeEEEEEeeecCCCCCeEEEEeCCeeCCCCCCceeeecCCCeeeEEEcccCCCCCeEEEEEEEecccc
Q psy15667 205 LPEGARTRVICGVTHGDPPLTIRWLKDGKPLSPRFPVNVSDLDSFSSLLSINSVSAAHSGEYTCVASNTAAQ 276 (286)
Q Consensus 205 ~~~g~~~~l~c~~~~~~p~~~~~W~~~g~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~N~~g~ 276 (286)
|.++....+.|....+.|...++|+|++..+.+...+.... ...|+|..+...|+|+|+|+|.|-++.
T Consensus 141 V~~~s~~~l~cr~pe~~paae~~w~k~e~~~~pd~n~~~~~----d~~li~~~arlsd~~nytc~a~ni~~~ 208 (909)
T KOG1480|consen 141 VQEETTLQLPCRPPEGDPKAEVEWLKNEVVIDPDANVIRAS----DHNLIISQARLSDSGNYTCEATNIVAK 208 (909)
T ss_pred ecccccccccccCcccchhhhhhccccCCCCCccccchhhh----cCCccccchhhhhcccceeeeehhhcc
Confidence 44556667777777788889999999999887754443322 235789999999999999999998764
No 332
>cd05772 IgC_SIRP Signal-regulatory protein (SIRP) immunoglobulin-like domain. IgC_SIRP: Immunoglobulin-like domain of signal-regulatory proteins (SIRP); the signal-regulatory proteins (SIRP) are Ig-like cell surface receptors detected in hematopoietic and non-hematopoietic cells. While their extracellular domains are similar, SIRP are classified as alpha or beta based on the length of the intracytoplasmic domain. Those having a 110- to 113-amino acid tail are classified as SIRP-alpha, and those having a 5-amino acid tail as SIRP-beta. SIRP-alpha and SIRP-beta molecules are thought to have complementary roles in signal regulation: SIRP-alpha inhibit signalling via their immunoreceptor tyrosine (IT)-based inhibition motifs while SIRP-beta are activating. SIRP-beta lack the cytoplasmic domainof SIRP-alpha, and associate with at least one other transmembrane protein (DAP-12 or KARAP). The IT-based activation motifs within DAP-12's cytoplasmic domain may link SIRP-beta to the activating
Probab=97.54 E-value=0.0016 Score=46.25 Aligned_cols=70 Identities=23% Similarity=0.423 Sum_probs=41.5
Q ss_pred CCCCCeEEEEEeeecCCCC-CeEEEEeCCeeCCCCCCceeeecCC----CeeeEEEcccCCCCCe-EEEEEEEeccc
Q psy15667 205 LPEGARTRVICGVTHGDPP-LTIRWLKDGKPLSPRFPVNVSDLDS----FSSLLSINSVSAAHSG-EYTCVASNTAA 275 (286)
Q Consensus 205 ~~~g~~~~l~c~~~~~~p~-~~~~W~~~g~~~~~~~~~~~~~~~~----~~~~L~i~~v~~~d~G-~Y~C~a~N~~g 275 (286)
+..|+.+.|.|.+....|. ..++|+|||+.+...........+. ....|.+.. ...|.| .|+|.+.....
T Consensus 18 ~~~g~~~tL~C~a~gF~P~~i~v~W~kng~~~~~~~~~~~p~~d~~ty~~~S~L~~~~-~~~d~~~~ytC~V~H~~l 93 (111)
T cd05772 18 ANPGQSVNFTCSAHGFSPRDITVKWLKNGNELSAEQPNITPEGDSVSYNVTSTVQVKL-TEDDVHSQVTCEVQHRTL 93 (111)
T ss_pred cCCCCCEEEEEEEeeEeCCCCEEEEEECCEECcccccceeeCCCCCcEEEEEEEEEEC-ccccccCceEEEEEeCCC
Confidence 3456667888877766665 6899999999875432111111111 133454443 344544 49999988653
No 333
>cd07697 IgC_TCR_gamma T cell receptor (TCR) gamma chain constant immunoglobulin domain. IgC_TCR_gamma; immunoglobulin (Ig) constant (C) domain of the gamma chain of gamma-delta T-cell receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are heterodimers consisting of alpha and beta chains or gamma and delta chains. Each chain contains a variable (V) and a constant (C) region. The majority of T cells contain alpha-beta TCRs but a small subset contain gamma-delta TCRs. Alpha-beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. Gamma-delta TCRs recognize intact protein antigens; they recognize protein antigens directly and without antigen processing, and MHC independently of the bound peptide. Gamma-delta T cells can also be stimulated by non-peptide antigens such as small phosphate- or amine-containing compounds.
Probab=97.54 E-value=0.0014 Score=45.22 Aligned_cols=38 Identities=11% Similarity=0.122 Sum_probs=28.2
Q ss_pred ccccccccCCCcEEEEEEeecC-CC-CeeEEeeCCEEcCC
Q psy15667 8 SFIEQTLQPGPAVSLKCIASGN-PT-PDIGWTLDGFELPT 45 (286)
Q Consensus 8 ~~~~~~~~~G~~~~l~C~~~g~-p~-p~v~W~~~~~~l~~ 45 (286)
.+....+..++.++|.|.+.|- |. -.|+|.+||..+..
T Consensus 7 ~ps~~e~~~~~~~tL~C~a~gFyP~~I~v~W~kng~~~~~ 46 (96)
T cd07697 7 SPSKKEIEKQGQGIYLCLLENFFPDVIQVHWREGNSPSIL 46 (96)
T ss_pred CCCHHHHccCCCEEEEEEEEEEeCCCeEEEEEECCEECcC
Confidence 3433466667889999999994 43 36799999998754
No 334
>cd07696 IgC_CH3 CH3 domain (third constant Ig domain of the heavy chain) in immunoglobulin. IgC_CH3: The third immunoglobulin constant domain (IgC) of immunoglobulin (Ig) heavy chains. This domain is found on the Fc fragment. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. There are two types of light chains: kappa and lambda; each composed of a constant domain and a variable domain. There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are modular proteins, in which the variable and constant domains have clear, conserved sequence patterns.
Probab=97.53 E-value=0.00087 Score=46.31 Aligned_cols=75 Identities=19% Similarity=0.262 Sum_probs=41.3
Q ss_pred cccccccCCCcEEEEEEeecC--CC-CeeEEeeCCEEcCCCCeeEeceEEecccc--eeEEEEEcccccCCCeEEEEEEE
Q psy15667 9 FIEQTLQPGPAVSLKCIASGN--PT-PDIGWTLDGFELPTNNRFVIGQFVSGHGD--VISHVNISHVTVEDGGEYACVAE 83 (286)
Q Consensus 9 ~~~~~~~~G~~~~l~C~~~g~--p~-p~v~W~~~~~~l~~~~~~~~~~~~~~~~~--~~~~l~I~~~~~~D~G~Y~C~a~ 83 (286)
+....+..|+.++|.|.+.|. |. -.|+|.||++..... ... ......++. ....|.+..-...+.-.|+|.+.
T Consensus 6 Ps~~~l~~~~~~tLtC~v~gf~yP~~i~v~W~r~~~~~~~~-~~~-~~~~~~dgty~~~s~l~v~~~~w~~g~~ysC~V~ 83 (96)
T cd07696 6 PSPKQLLLTKSVKLTCLVTNLTSPEGVNVTWTRGSGEPVKA-SIQ-PPESHNNATLSVTSTLNVSTDDWISGDTFQCKVT 83 (96)
T ss_pred cCHHHhccCCCeEEEEEEeCCCCCCCcEEEEEECCeEeeeE-Eec-ccccCCCCCEEEEEEEEeCHHHccCCCcEEEEEE
Confidence 334456778999999999998 43 367999997533110 000 000011111 11234444433334458999987
Q ss_pred cC
Q psy15667 84 NR 85 (286)
Q Consensus 84 n~ 85 (286)
-.
T Consensus 84 H~ 85 (96)
T cd07696 84 HP 85 (96)
T ss_pred CC
Confidence 64
No 335
>cd05719 Ig2_PVR_like Second immunoglobulin (Ig) domain of poliovirus receptor (PVR, also known as CD155) and similar proteins. Ig2_PVR_like: domain similar to the second immunoglobulin (Ig) domain of poliovirus receptor (PVR, also known as CD155). Poliovirus (PV) binds to its cellular receptor (PVR/CD155) to initiate infection. CD155 is a membrane-anchored, single-span glycoprotein; its extracellular region has three Ig-like domains. There are four different isotypes of CD155 (referred to as alpha, beta, gamma, and delta), these result from alternate splicing of the CD155 mRNA, and have identical extracellular domains. CD155-beta and - gamma, are secreted, CD155-alpha and delta are membrane-bound and function as PV receptors. The virus recognition site is contained in the amino-terminal domain, D1. Having the virus attachment site on the receptor distal from the plasma membrane may be important for successful initiation of infection of cells by the virus. CD155 binds in the poliovirus
Probab=97.50 E-value=0.0012 Score=45.55 Aligned_cols=74 Identities=26% Similarity=0.393 Sum_probs=46.2
Q ss_pred CeEEEEEeeecCCCCCeEEEEeCCeeCCCCCCceeee-cCC---CeeeEEEcccCCCCCeEEEEEEEecc--cceeeEEE
Q psy15667 209 ARTRVICGVTHGDPPLTIRWLKDGKPLSPRFPVNVSD-LDS---FSSLLSINSVSAAHSGEYTCVASNTA--AQARYSSK 282 (286)
Q Consensus 209 ~~~~l~c~~~~~~p~~~~~W~~~g~~~~~~~~~~~~~-~~~---~~~~L~i~~v~~~d~G~Y~C~a~N~~--g~~~~~~~ 282 (286)
....+.|.+..|.|++.|+|+++.. ......... .++ ....|.+......|.-.|+|.+.|.. .....+..
T Consensus 16 ~~~va~C~s~~gkP~a~ItW~~~~~---~~~~~~~~~~~~g~~tv~S~l~~~p~~~d~G~~~tC~v~h~~l~~~~~~~~~ 92 (95)
T cd05719 16 PVTVATCVSANGKPPATISWETTLG---GEAETQSKENPNGTVTVTSEYRLVPSREANGKELTCVVSHPTLQEPQRFSVT 92 (95)
T ss_pred ccEEEEEECCCCcCCCEEEEEeCCC---CcceeEeecCCCCCEEEEEEEEEecCHHHCCCEEEEEEeCcccCCCeEEEEE
Confidence 4577899998999999999999721 110000000 011 13456666666677889999999986 44445554
Q ss_pred EEE
Q psy15667 283 LQV 285 (286)
Q Consensus 283 L~V 285 (286)
|.|
T Consensus 93 L~V 95 (95)
T cd05719 93 LNV 95 (95)
T ss_pred eeC
Confidence 543
No 336
>smart00406 IGv Immunoglobulin V-Type.
Probab=97.49 E-value=0.00032 Score=46.49 Aligned_cols=60 Identities=30% Similarity=0.472 Sum_probs=37.2
Q ss_pred cEEEEEEeecCCCC--eeEEeeCCE--E---cC-------------CCCeeEeceEEecccceeEEEEEcccccCCCeEE
Q psy15667 19 AVSLKCIASGNPTP--DIGWTLDGF--E---LP-------------TNNRFVIGQFVSGHGDVISHVNISHVTVEDGGEY 78 (286)
Q Consensus 19 ~~~l~C~~~g~p~p--~v~W~~~~~--~---l~-------------~~~~~~~~~~~~~~~~~~~~l~I~~~~~~D~G~Y 78 (286)
+++|.|.......+ .+.|++... . +. ...|+.... .......+|.|.+++.+|+|.|
T Consensus 1 ~v~l~C~~~~~~~~~~~v~W~~~~~~~~~~~l~~~~~~~~~~~~~~~~~R~~~~~---~~~~~~~~L~i~~~~~~D~G~Y 77 (81)
T smart00406 1 SVTLSCKASGFTFSSYYVSWVRQPPGKGLEWLGYIGSSGSTYYQQSYKGRVTISK---DTSKNDVSLTISNLRVEDTGTY 77 (81)
T ss_pred CEEEEEEEeccccceeEEEEEEeCCCCCeEEEEEEcCCCcEEECcccCCcEEEEe---cCcCCEEEEEEcCCCHHHCEEE
Confidence 47899988865543 789987431 1 10 012332211 0012234699999999999999
Q ss_pred EEE
Q psy15667 79 ACV 81 (286)
Q Consensus 79 ~C~ 81 (286)
.|.
T Consensus 78 ~C~ 80 (81)
T smart00406 78 YCA 80 (81)
T ss_pred EEc
Confidence 996
No 337
>cd07703 Ig2_Nectin-2_like Second immunoglobulin (Ig) domain of nectin-2 (also known as poliovirus receptor related protein 2 or CD112) and similar proteins. Ig2_Nectin-2_like: domain similar to the second immunoglobulin (Ig) domain of nectin-2 (also known as poliovirus receptor related protein 2 or CD112). Nectin-2 belongs to the nectin family comprised of four transmembrane glycoproteins (nectins-1 through 4). Nectins are synaptic cell adhesion molecules (CAMs) which facilitate adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. Nectin-2 and nectin-3 localize at Sertoli-spermatid junctions where they form heterophilic trans-interactions between the cells that are essential for the formation and maintenance of the junctions and for spermatid development.
Probab=97.49 E-value=0.00095 Score=45.93 Aligned_cols=72 Identities=19% Similarity=0.253 Sum_probs=44.9
Q ss_pred eEEEEEeeecCCCCCeEEEEeCCeeCCCCCCceeee-cCC---CeeeEEEcccCCCCCeEEEEEEEecc--cceeeEEEE
Q psy15667 210 RTRVICGVTHGDPPLTIRWLKDGKPLSPRFPVNVSD-LDS---FSSLLSINSVSAAHSGEYTCVASNTA--AQARYSSKL 283 (286)
Q Consensus 210 ~~~l~c~~~~~~p~~~~~W~~~g~~~~~~~~~~~~~-~~~---~~~~L~i~~v~~~d~G~Y~C~a~N~~--g~~~~~~~L 283 (286)
...+.|.+..|.|++.|+|+++..-. ....... .++ ....|.+..-...|.-.|+|.+.|.. ......+.|
T Consensus 17 ~~va~C~s~~gkPaa~IsW~~~~~g~---~~~~~~~~~~gt~tv~S~l~~~P~~~d~Gk~ltC~v~h~al~~~~~~~~~l 93 (95)
T cd07703 17 VPVAKCVSANGRPPARISWSSTLGGN---ANTTSKENGDGTVTVTSEYSLVPTPEANGKEVTCKVEHETLQEPQLLPVTL 93 (95)
T ss_pred cEEEEEEcCCCCCCcEEEEEcCCCCC---eeEEEEeCCCCCEEEEEEEEEecCHHHCCCEEEEEEeCcccCCCeEEEEEE
Confidence 46788988889999999999982211 0000000 111 13456666666677889999999987 344444444
Q ss_pred E
Q psy15667 284 Q 284 (286)
Q Consensus 284 ~ 284 (286)
.
T Consensus 94 ~ 94 (95)
T cd07703 94 S 94 (95)
T ss_pred e
Confidence 3
No 338
>cd05719 Ig2_PVR_like Second immunoglobulin (Ig) domain of poliovirus receptor (PVR, also known as CD155) and similar proteins. Ig2_PVR_like: domain similar to the second immunoglobulin (Ig) domain of poliovirus receptor (PVR, also known as CD155). Poliovirus (PV) binds to its cellular receptor (PVR/CD155) to initiate infection. CD155 is a membrane-anchored, single-span glycoprotein; its extracellular region has three Ig-like domains. There are four different isotypes of CD155 (referred to as alpha, beta, gamma, and delta), these result from alternate splicing of the CD155 mRNA, and have identical extracellular domains. CD155-beta and - gamma, are secreted, CD155-alpha and delta are membrane-bound and function as PV receptors. The virus recognition site is contained in the amino-terminal domain, D1. Having the virus attachment site on the receptor distal from the plasma membrane may be important for successful initiation of infection of cells by the virus. CD155 binds in the poliovirus
Probab=97.45 E-value=0.00084 Score=46.27 Aligned_cols=74 Identities=20% Similarity=0.355 Sum_probs=42.6
Q ss_pred ccccccccCCCcEEEEEEee-cCCCCeeEEeeCCEEcCCCCeeEeceEEecccc--eeEEEEEcccccCCCeEEEEEEEc
Q psy15667 8 SFIEQTLQPGPAVSLKCIAS-GNPTPDIGWTLDGFELPTNNRFVIGQFVSGHGD--VISHVNISHVTVEDGGEYACVAEN 84 (286)
Q Consensus 8 ~~~~~~~~~G~~~~l~C~~~-g~p~p~v~W~~~~~~l~~~~~~~~~~~~~~~~~--~~~~l~I~~~~~~D~G~Y~C~a~n 84 (286)
...+..........+.|.+. |.|.++|+|+++ +....... +....++. ..+.|.+.-...+|...|+|++.+
T Consensus 6 ~~~~~~~~~~~~~va~C~s~~gkP~a~ItW~~~---~~~~~~~~--~~~~~~g~~tv~S~l~~~p~~~d~G~~~tC~v~h 80 (95)
T cd05719 6 EAGPVALGGEPVTVATCVSANGKPPATISWETT---LGGEAETQ--SKENPNGTVTVTSEYRLVPSREANGKELTCVVSH 80 (95)
T ss_pred ceeccccCCCccEEEEEECCCCcCCCEEEEEeC---CCCcceeE--eecCCCCCEEEEEEEEEecCHHHCCCEEEEEEeC
Confidence 34444556667789999884 799999999987 21111110 11111221 123455543444444599999988
Q ss_pred CC
Q psy15667 85 RA 86 (286)
Q Consensus 85 ~~ 86 (286)
..
T Consensus 81 ~~ 82 (95)
T cd05719 81 PT 82 (95)
T ss_pred cc
Confidence 54
No 339
>smart00406 IGv Immunoglobulin V-Type.
Probab=97.41 E-value=0.00095 Score=44.17 Aligned_cols=21 Identities=24% Similarity=0.528 Sum_probs=18.7
Q ss_pred CeeeEEEcccCCCCCeEEEEE
Q psy15667 249 FSSLLSINSVSAAHSGEYTCV 269 (286)
Q Consensus 249 ~~~~L~i~~v~~~d~G~Y~C~ 269 (286)
....|.|.+++.+|+|.|.|.
T Consensus 60 ~~~~L~i~~~~~~D~G~Y~C~ 80 (81)
T smart00406 60 NDVSLTISNLRVEDTGTYYCA 80 (81)
T ss_pred CEEEEEEcCCCHHHCEEEEEc
Confidence 356799999999999999995
No 340
>smart00407 IGc1 Immunoglobulin C-Type.
Probab=97.34 E-value=0.0013 Score=43.19 Aligned_cols=64 Identities=23% Similarity=0.527 Sum_probs=37.1
Q ss_pred EEEEEeeecCCCC-CeEEEEeCCeeCCCCC-Cceeee-cC---CCeeeEEEcccCCCCCeEEEEEEEecc
Q psy15667 211 TRVICGVTHGDPP-LTIRWLKDGKPLSPRF-PVNVSD-LD---SFSSLLSINSVSAAHSGEYTCVASNTA 274 (286)
Q Consensus 211 ~~l~c~~~~~~p~-~~~~W~~~g~~~~~~~-~~~~~~-~~---~~~~~L~i~~v~~~d~G~Y~C~a~N~~ 274 (286)
+.|.|.+....|+ ..+.|+|+|+.+.... ...... .+ .....|.|......+...|+|.+....
T Consensus 2 ~~L~C~a~gf~P~~i~v~W~k~g~~~~~~~~~~~~~~~~~gt~~~~s~L~v~~~~~~~~~~~tC~V~H~~ 71 (75)
T smart00407 2 ATLVCLVSGFYPPDITVTWLRNGQEVTSGVSTTDPLKNSDGTYFLSSYLTVSASTWESGDTYTCQVTHEG 71 (75)
T ss_pred eEEEEEEEeEeCCCCEEEEEECCEECCCCEEECceEECCCCCEEEEEEEEEccccCCCCCEEEEEEEEcC
Confidence 3455655544444 5789999998643321 110111 11 123456666666778899999997654
No 341
>cd07691 Ig_CD3_gamma_delta Immunoglobulin (Ig)-like domain of CD3 gamma and delta chains. Ig_CD3_gamma_delta; immunoglobulin (Ig)-like domain of CD3 gamma and delta chains. CD3 is a T cell surface receptor that is associated with alpha/beta T cell receptors (TCRs). The CD3 complex consists of one gamma, one delta, two epsilon, and two zeta chains. The CD3 subunits form heterodimers as gamma/epsilon, delta/epsilon, and zeta/zeta. The gamma, delta, and epsilon chains each contain an extracellular Ig domain, whereas the extracellular domains of the zeta chains are very small and have unknown structure. The CD3 domain participates in intracellular signalling once the TCR has bound an MHC/antigen complex.
Probab=97.33 E-value=0.0007 Score=42.74 Aligned_cols=49 Identities=27% Similarity=0.478 Sum_probs=35.5
Q ss_pred CCeEEEEEeeecCCCCCeEEEEeCCeeCCCCCCceeeecCCCeeeEEEcccCCCCCeEEEEEEEe
Q psy15667 208 GARTRVICGVTHGDPPLTIRWLKDGKPLSPRFPVNVSDLDSFSSLLSINSVSAAHSGEYTCVASN 272 (286)
Q Consensus 208 g~~~~l~c~~~~~~p~~~~~W~~~g~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~N 272 (286)
.+.+.|.|.+ ..+|.|++ |..+.... +.+|-+.++..+-.|.|.|.+.|
T Consensus 6 ~~~V~L~C~~-----~tsi~W~k-G~~~~~~~----------~~tlnLGs~~~DPRG~Y~C~~s~ 54 (69)
T cd07691 6 EGKVFLKCNG-----ATNITWKK-GKEILEVS----------NTLLDLGSRINDPRGTYSCKESE 54 (69)
T ss_pred CceEEEEecC-----CCcEEEec-Cccccccc----------ccEEeccCcccCCCcceEecCcc
Confidence 4578888964 25699999 55443221 34677888888889999999987
No 342
>PF07654 C1-set: Immunoglobulin C1-set domain; InterPro: IPR003597 The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulphide bonds. There are two types of light chains: kappa and lambda, each composed of a constant domain (CL) and a variable domain (VL). There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are highly modular proteins, in which the variable and constant domains have clear, conserved sequence patterns. The domains in Ig and Ig-like molecules are grouped into four types: V-set (variable; IPR013106 from INTERPRO), C1-set (constant-1; IPR003597 from INTERPRO), C2-set (constant-2; IPR008424 from INTERPRO) and I-set (intermediate; IPR013098 from INTERPRO) []. Structural studies have shown that these domains share a common core Greek-key beta-sandwich structure, with the types differing in the number of strands in the beta-sheets as well as in their sequence patterns [, ]. Immunoglobulin-like domains that are related in both sequence and structure can be found in several diverse protein families. Ig-like domains are involved in a variety of functions, including cell-cell recognition, cell-surface receptors, muscle structure and the immune system []. This entry represents C1-set domains, which are classical Ig-like domains resembling the antibody constant domain. C1-set domains are found almost exclusively in molecules involved in the immune system, such as in immunoglobulin light and heavy chains, in the major histocompatibility complex (MHC) class I and II complex molecules [, ], and in various T-cell receptors.; PDB: 3BVN_D 3BXN_A 3PWV_E 3L9R_F 2XFX_B 1BMG_A 1K8I_A 3M1B_G 3M17_C 1EXU_A ....
Probab=97.33 E-value=0.0018 Score=43.37 Aligned_cols=65 Identities=23% Similarity=0.480 Sum_probs=41.1
Q ss_pred CCCcEEEEEEeecC-CCC-eeEEeeCCEEcCCCCeeEeceEEeccccee---EEEEEcccccCCCeEEEEEEEcC
Q psy15667 16 PGPAVSLKCIASGN-PTP-DIGWTLDGFELPTNNRFVIGQFVSGHGDVI---SHVNISHVTVEDGGEYACVAENR 85 (286)
Q Consensus 16 ~G~~~~l~C~~~g~-p~p-~v~W~~~~~~l~~~~~~~~~~~~~~~~~~~---~~l~I~~~~~~D~G~Y~C~a~n~ 85 (286)
.++.++|.|.+.+. |.. .|.|++||..+........ . ....++.. ..|.|. ..+...|+|.+...
T Consensus 7 ~~~~~~L~C~v~~f~P~~i~v~W~~~~~~~~~~~~~~~-~-~~~~dgty~~~s~l~v~---~~~~~~ysC~V~H~ 76 (83)
T PF07654_consen 7 LGGSVTLTCLVSGFYPKDITVTWLKNGKEVTEGVETTP-P-PPNSDGTYSVTSSLTVT---WNSGDEYSCRVTHE 76 (83)
T ss_dssp STSEEEEEEEEEEEBSSTEEEEEEETTEEETTTEEEEE-E-EEETTSEEEEEEEEEEE---TTTTGGEEEEEEET
T ss_pred CCCCEEEEEEEEEEECCCcEEEEEeccceeeeeeeecc-c-ccccccceeeeEEEEec---CCCCCEEEEEEEEC
Confidence 48999999999984 544 7999999998865432211 1 11122222 234444 55666899998754
No 343
>cd04985 IgC_CH1 CH1 domain (first constant Ig domain of the heavy chain) in immunoglobulin. IgC_CH1: The first immunoglobulin constant domain (IgC), of immunoglobulin (Ig) heavy chains. This domain is found on the Fab antigen-binding fragment. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. There are two types of light chains: kappa and lambda; each composed of a constant domain and a variable domain. There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are modular proteins, in which the variable and constant domains have clear, conserved sequence patterns.
Probab=97.32 E-value=0.0025 Score=43.90 Aligned_cols=77 Identities=16% Similarity=0.265 Sum_probs=41.5
Q ss_pred eEeccccccccCCCcEEEEEEeecC-CC-CeeEEeeCCEEcCCCCeeEeceEEecccce---eEEEEEcccccCCCeEEE
Q psy15667 5 LTYSFIEQTLQPGPAVSLKCIASGN-PT-PDIGWTLDGFELPTNNRFVIGQFVSGHGDV---ISHVNISHVTVEDGGEYA 79 (286)
Q Consensus 5 ~~~~~~~~~~~~G~~~~l~C~~~g~-p~-p~v~W~~~~~~l~~~~~~~~~~~~~~~~~~---~~~l~I~~~~~~D~G~Y~ 79 (286)
|-+.+-+... .++.++|.|.+.|. |. -.|+|.+||+. ..+... ......+++. ...|.|..-.......|+
T Consensus 5 ~~l~~~~~~~-~~~~~~L~C~a~gFyP~~i~vtW~k~g~~-~~~~~~--~~~~~~~dgty~~~s~L~v~~~~w~~~~~yt 80 (95)
T cd04985 5 FPLVPCCSSS-SSDSVTLGCLATGFLPEPVTFTWNSGSNS-TSGVKT--YPAVLQSGGLYTASSQLTVPASEWKGKESFY 80 (95)
T ss_pred EEeCCCcccc-CCCcEEEEEEEeeEECCCcEEEEeECCEE-CCCcEE--CCCEeCCCCCEEEEEEEEEeHHHcCCCCcEE
Confidence 3334433333 56779999999995 43 47789999997 322110 0001111222 122444433322355899
Q ss_pred EEEEcC
Q psy15667 80 CVAENR 85 (286)
Q Consensus 80 C~a~n~ 85 (286)
|++.-.
T Consensus 81 C~V~H~ 86 (95)
T cd04985 81 CKVEHP 86 (95)
T ss_pred EEEEeC
Confidence 998764
No 344
>PHA03376 BARF1; Provisional
Probab=97.21 E-value=0.0043 Score=47.51 Aligned_cols=35 Identities=17% Similarity=0.354 Sum_probs=25.8
Q ss_pred CeeeEEEcccCCCCCeEEEEEEEecccceeeEEEE
Q psy15667 249 FSSLLSINSVSAAHSGEYTCVASNTAAQARYSSKL 283 (286)
Q Consensus 249 ~~~~L~i~~v~~~d~G~Y~C~a~N~~g~~~~~~~L 283 (286)
++-+|.|.+++.+|.|.|+|.-.-.-..+...-+|
T Consensus 85 gnvsLvI~~l~lSDdGtY~C~fQkge~~~~k~ehL 119 (221)
T PHA03376 85 NTFFLVVTAANISHDGNYLCRMKLGETEVTKQEHL 119 (221)
T ss_pred CeEEEEEEeeeecCCceEEEEEEcCCCceeeeeee
Confidence 46689999999999999999877644433333333
No 345
>KOG1480|consensus
Probab=97.19 E-value=0.00014 Score=66.28 Aligned_cols=74 Identities=22% Similarity=0.466 Sum_probs=57.2
Q ss_pred eccccccccCCCcEEEEEE-eecCCCCeeEEeeCCEEcCCCCeeEeceEEecccceeEEEEEcccccCCCeEEEEEEEcC
Q psy15667 7 YSFIEQTLQPGPAVSLKCI-ASGNPTPDIGWTLDGFELPTNNRFVIGQFVSGHGDVISHVNISHVTVEDGGEYACVAENR 85 (286)
Q Consensus 7 ~~~~~~~~~~G~~~~l~C~-~~g~p~p~v~W~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~I~~~~~~D~G~Y~C~a~n~ 85 (286)
..+--+.|..+..++|.|. ..+.|+..+.|++++..+..+......+ . ..+.|..+...|+|.|+|+|.|.
T Consensus 134 ~~p~~q~V~~~s~~~l~cr~pe~~paae~~w~k~e~~~~pd~n~~~~~----d----~~li~~~arlsd~~nytc~a~ni 205 (909)
T KOG1480|consen 134 QSPVGQEVQEETTLQLPCRPPEGDPKAEVEWLKNEVVIDPDANVIRAS----D----HNLIISQARLSDSGNYTCEATNI 205 (909)
T ss_pred cChhhheecccccccccccCcccchhhhhhccccCCCCCccccchhhh----c----CCccccchhhhhcccceeeeehh
Confidence 3344467888999999996 5588999999999998887755543221 1 13779999999999999999997
Q ss_pred CEE
Q psy15667 86 AGT 88 (286)
Q Consensus 86 ~g~ 88 (286)
.+.
T Consensus 206 ~~~ 208 (909)
T KOG1480|consen 206 VAK 208 (909)
T ss_pred hcc
Confidence 664
No 346
>cd07698 IgC_MHC_I_alpha3 Class I major histocompatibility complex (MHC) alpha chain immunoglobulin domain. IgC_MHC_I_alpha3; Immunoglobulin (Ig) domain of major histocompatibility complex (MHC) class I alpha chain. Class I MHC proteins bind antigenic peptide fragments and present them to CD8+ T lymphocytes. Class I molecules consist of a transmembrane alpha chain and a small chain called the beta2 microglobulin. The alpha chain contains three extracellular domains, two of which fold together to form the peptide-binding cleft (alpha1 and alpha2), and one which has an Ig fold (alpha3). Peptide binding to class I molecules occurs in the endoplasmic reticulum (ER) and involves both chaperones and dedicated factors to assist in peptide loading. Class I MHC molecules are expressed on most nucleated cells.
Probab=97.17 E-value=0.0036 Score=42.93 Aligned_cols=68 Identities=18% Similarity=0.321 Sum_probs=34.2
Q ss_pred CCeEEEEEeeecCCCC-CeEEEEeCCeeCCCCC-Cceeeec-CCCeeeEEEcccCCCCCeEEEEEEEeccc
Q psy15667 208 GARTRVICGVTHGDPP-LTIRWLKDGKPLSPRF-PVNVSDL-DSFSSLLSINSVSAAHSGEYTCVASNTAA 275 (286)
Q Consensus 208 g~~~~l~c~~~~~~p~-~~~~W~~~g~~~~~~~-~~~~~~~-~~~~~~L~i~~v~~~d~G~Y~C~a~N~~g 275 (286)
++.+.|.|.+.+-.|. ..++|.|+|..+.... .-..... +..-.....-.+...|...|+|.+.+..-
T Consensus 14 ~~~~~L~C~a~gF~P~~i~v~W~~~g~~~~~~~~~~~~~~~~d~ty~~~s~l~v~~~~~~~ytC~V~H~~~ 84 (93)
T cd07698 14 DGSLTLSCHATGFYPRDIEVTWLRDGEDSVDDVESGEILPNGDGTYQLWVTLEVPPEDKARYSCRVEHSGL 84 (93)
T ss_pred CCcEEEEEEEEEEeCCCcEEEEEECCEECcccccccceEECCCCeEEEEEEEEECCCCCCEEEEEEEeCCC
Confidence 3445555555433333 4788888886332211 0011111 11001112334555689999999987654
No 347
>cd07703 Ig2_Nectin-2_like Second immunoglobulin (Ig) domain of nectin-2 (also known as poliovirus receptor related protein 2 or CD112) and similar proteins. Ig2_Nectin-2_like: domain similar to the second immunoglobulin (Ig) domain of nectin-2 (also known as poliovirus receptor related protein 2 or CD112). Nectin-2 belongs to the nectin family comprised of four transmembrane glycoproteins (nectins-1 through 4). Nectins are synaptic cell adhesion molecules (CAMs) which facilitate adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. Nectin-2 and nectin-3 localize at Sertoli-spermatid junctions where they form heterophilic trans-interactions between the cells that are essential for the formation and maintenance of the junctions and for spermatid development.
Probab=97.15 E-value=0.0025 Score=43.88 Aligned_cols=69 Identities=22% Similarity=0.367 Sum_probs=39.7
Q ss_pred cccCCCcEEEEEEee-cCCCCeeEEeeCCEEcCCCCeeEeceEEecccc--eeEEEEEcccccCCCeEEEEEEEcCC
Q psy15667 13 TLQPGPAVSLKCIAS-GNPTPDIGWTLDGFELPTNNRFVIGQFVSGHGD--VISHVNISHVTVEDGGEYACVAENRA 86 (286)
Q Consensus 13 ~~~~G~~~~l~C~~~-g~p~p~v~W~~~~~~l~~~~~~~~~~~~~~~~~--~~~~l~I~~~~~~D~G~Y~C~a~n~~ 86 (286)
....-..+.++|.+. |.|.++|+|+++.... .... +....++. ..+.|.+.--..+|...|+|++.+..
T Consensus 11 ~~~~~~~~va~C~s~~gkPaa~IsW~~~~~g~---~~~~--~~~~~~gt~tv~S~l~~~P~~~d~Gk~ltC~v~h~a 82 (95)
T cd07703 11 SAGTIPVPVAKCVSANGRPPARISWSSTLGGN---ANTT--SKENGDGTVTVTSEYSLVPTPEANGKEVTCKVEHET 82 (95)
T ss_pred ecCCCccEEEEEEcCCCCCCcEEEEEcCCCCC---eeEE--EEeCCCCCEEEEEEEEEecCHHHCCCEEEEEEeCcc
Confidence 334456789999766 7899999999882111 1111 11111222 12345554444444459999999854
No 348
>PHA02633 hypothetical protein; Provisional
Probab=97.14 E-value=0.0011 Score=40.83 Aligned_cols=36 Identities=19% Similarity=0.305 Sum_probs=29.3
Q ss_pred eeeEEEcccCCCCCeEEEEEEEecccceeeEEEEEE
Q psy15667 250 SSLLSINSVSAAHSGEYTCVASNTAAQARYSSKLQV 285 (286)
Q Consensus 250 ~~~L~i~~v~~~d~G~Y~C~a~N~~g~~~~~~~L~V 285 (286)
...|.|-++..+|+|.|.|..+|.---...++.|+|
T Consensus 17 ~~nLwilpa~~sDSGiYiC~~rn~t~c~~~si~l~V 52 (63)
T PHA02633 17 CNNMLILNPTQSDSGIYMCITKNETYSDMMKFDLCI 52 (63)
T ss_pred cccEEEeccccccCcEEEEEEcCCCeeEEEEEEEEE
Confidence 346889999999999999999988766666666665
No 349
>cd07691 Ig_CD3_gamma_delta Immunoglobulin (Ig)-like domain of CD3 gamma and delta chains. Ig_CD3_gamma_delta; immunoglobulin (Ig)-like domain of CD3 gamma and delta chains. CD3 is a T cell surface receptor that is associated with alpha/beta T cell receptors (TCRs). The CD3 complex consists of one gamma, one delta, two epsilon, and two zeta chains. The CD3 subunits form heterodimers as gamma/epsilon, delta/epsilon, and zeta/zeta. The gamma, delta, and epsilon chains each contain an extracellular Ig domain, whereas the extracellular domains of the zeta chains are very small and have unknown structure. The CD3 domain participates in intracellular signalling once the TCR has bound an MHC/antigen complex.
Probab=97.12 E-value=0.00091 Score=42.24 Aligned_cols=51 Identities=22% Similarity=0.440 Sum_probs=36.6
Q ss_pred cCCCcEEEEEEeecCCCCeeEEeeCCEEcCCCCeeEeceEEecccceeEEEEEcccccCCCeEEEEEEEc
Q psy15667 15 QPGPAVSLKCIASGNPTPDIGWTLDGFELPTNNRFVIGQFVSGHGDVISHVNISHVTVEDGGEYACVAEN 84 (286)
Q Consensus 15 ~~G~~~~l~C~~~g~p~p~v~W~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~I~~~~~~D~G~Y~C~a~n 84 (286)
...+.|.|+|.+. ..|.|++ |..+.... ...|.+.+...+-.|.|.|.+.+
T Consensus 4 e~~~~V~L~C~~~----tsi~W~k-G~~~~~~~--------------~~tlnLGs~~~DPRG~Y~C~~s~ 54 (69)
T cd07691 4 ESEGKVFLKCNGA----TNITWKK-GKEILEVS--------------NTLLDLGSRINDPRGTYSCKESE 54 (69)
T ss_pred ecCceEEEEecCC----CcEEEec-Cccccccc--------------ccEEeccCcccCCCcceEecCcc
Confidence 3456799999663 4599999 55543211 12477888899999999999877
No 350
>cd07699 IgC_L Immunoglobulin Constant domain. IgC_L: Immunoglobulin (Ig) light chain constant (C) domain. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. In Ig, each chain is composed of one variable domain (IgV) and one or more constant domains (IgC); these names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. There are five types of heavy chains (alpha, gamma, delta, epsilon, and mu), which determine the type of immunoglobulin: IgA, IgG, IgD, IgE, and IgM, respectively. In higher vertebrates, there are two types of light chain, designated kappa and lambda, which seem to be functionally identical, and can associate with any of the heavy chains.
Probab=97.12 E-value=0.0014 Score=45.77 Aligned_cols=70 Identities=21% Similarity=0.395 Sum_probs=41.1
Q ss_pred CCCCCeEEEEEeeecCCC-CCeEEEEeCCeeCCCCCC--ceeee-cC--CCeeeEEEcccCCCCCeEEEEEEEecc
Q psy15667 205 LPEGARTRVICGVTHGDP-PLTIRWLKDGKPLSPRFP--VNVSD-LD--SFSSLLSINSVSAAHSGEYTCVASNTA 274 (286)
Q Consensus 205 ~~~g~~~~l~c~~~~~~p-~~~~~W~~~g~~~~~~~~--~~~~~-~~--~~~~~L~i~~v~~~d~G~Y~C~a~N~~ 274 (286)
+..++.+.|.|.+..-.| ...++|+|||+.+..... ..... .. .....|.+..-...+...|+|.+....
T Consensus 14 ~~~~~~~~L~C~~~gfyP~~i~v~W~~~g~~~~~~~~~~~~~~~~dgty~~~s~L~v~~~~w~~~~~~sC~V~H~~ 89 (100)
T cd07699 14 LEKSGKATLVCLINDFYPGFATVQWKVDGATVSSGVQTSTTEQQSDNTYSLSSYLTLTKSDWNKHKVYTCEVTHEG 89 (100)
T ss_pred HccCCCcEEEEEEEeEECCCCEEEEEECCEECcccEeccccEECCCCCEEEEEEEEEcHHHhCCCCeEEEEEEecC
Confidence 334566777777765445 578999999998743211 00001 11 113345554444446889999998764
No 351
>cd05886 Ig1_Nectin-1_like First immunoglobulin (Ig) domain of nectin-1 (also known as poliovirus receptor related protein 1, or as CD111) and similar proteins. Ig1_Nectin-1_like: domain similar to the first immunoglobulin (Ig) domain of nectin-1 (also known as poliovirus receptor related protein 1, or as CD111). Nectin-1 belongs to the nectin family comprised of four transmembrane glycoproteins (nectins-1 through -4). Nectins are synaptic cell adhesion molecules (CAMs) which facilitate adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. In addition nectins heterophilically trans-interact with other CAMs such as nectin-like molecules (Necls), nectin-1 for example, has been shown to trans-interact with Necl-1. Nectins also interact with various other proteins, including the actin filament (F-actin)-binding protein, afadin. Mutation in the human nectin-1 gene is
Probab=97.09 E-value=0.0015 Score=45.36 Aligned_cols=37 Identities=19% Similarity=0.460 Sum_probs=29.6
Q ss_pred CcceEEEccCCCCCCeeEEEEEEc-CCcceeeeeeEEEE
Q psy15667 115 SSTSLVINPVGREDRGIYQCIARR-SDGDVAQGSAELQL 152 (286)
Q Consensus 115 ~~~~l~i~~v~~~d~G~Y~C~a~~-~~g~~~~~~~~l~v 152 (286)
...+|.|.++..+|+|.|+|...+ +.|. .+..+.|.|
T Consensus 61 ~daSi~i~nl~~~D~G~Y~C~v~t~P~g~-~~~~~~L~V 98 (99)
T cd05886 61 EDGTISLSRLELEDEGVYICEFATFPTGN-RESQLNLTV 98 (99)
T ss_pred CcceEEEcCCccccCEEEEEEEEeCCCCC-eEEEEEEEE
Confidence 457899999999999999999998 5664 345566665
No 352
>cd05766 IgC_MHC_II_beta Class II major histocompatibility complex (MHC) beta chain immunoglobulin domain. IgC_MHC_II_beta: Immunoglobulin (Ig) domain of major histocompatibility complex (MHC) class II beta chain. MHC class II molecules play a key role in the initiation of the antigen-specific immune reponse. In both humans and in mice these molecules have been shown to be expressed constitutively on the cell surface of professional antigen-presenting cells (APCs), for example on B-lymphocytes, monocytes, and macrophages. The expression of these molecules has been shown to be induced in nonprofessional APCs such as keratinocyctes, and they are expressed on the surface of activated human T cells and on T cells from other species. The MHC II molecules present antigenic peptides to CD4(+) T-lymphocytes. These peptides derive mostly from protelytic processing via the endocytic pathway, of antigens internalized by the APC. These peptides bind to the MHC class II molecules in the endosome be
Probab=97.06 E-value=0.012 Score=40.43 Aligned_cols=68 Identities=22% Similarity=0.489 Sum_probs=40.4
Q ss_pred CCCCeEEEEEeeecCCCC-CeEEEEeCCeeCCCCC-Cceeeec-C-CC--eeeEEEcccCCCCCeEEEEEEEecccc
Q psy15667 206 PEGARTRVICGVTHGDPP-LTIRWLKDGKPLSPRF-PVNVSDL-D-SF--SSLLSINSVSAAHSGEYTCVASNTAAQ 276 (286)
Q Consensus 206 ~~g~~~~l~c~~~~~~p~-~~~~W~~~g~~~~~~~-~~~~~~~-~-~~--~~~L~i~~v~~~d~G~Y~C~a~N~~g~ 276 (286)
..|+...|.|.+.+-.|. ..++|+|||+.+.... ....... + .. ...| .+...+...|+|.+.-....
T Consensus 12 ~~~~~~~L~C~~~gFyP~~i~v~W~~~g~~~~~~~~~~~~~~~~dgTy~~~s~L---~~~~~~~~~ysC~V~H~~l~ 85 (94)
T cd05766 12 SLSHPHLLVCHVWGFYPPEITVKWFKNGQEETEGVVSTELIPNGDWTYQILVML---ETTPSRGDTYTCVVEHSSLQ 85 (94)
T ss_pred cCCCCeEEEEEEeeecCCCCEEEEEECCeecCCCceecceEECCCCcEEEEEEE---EEcCCCCCEEEEEEEeCCCC
Confidence 456777888877665554 4789999999875531 1111111 1 11 2233 34456788999999876543
No 353
>cd05721 IgV_CTLA-4 Immunoglobulin (Ig) domain of cytotoxic T lymphocyte-associated antigen 4 (CTLA-4). IgV_CTLA-4: domain similar to the variable(v)-type immunoglobulin (Ig) domain found in cytotoxic T lymphocyte-associated antigen 4 (CTLA-4). CTLA-4 is involved in the regulation of T cell response, acting as an inhibitor of intracellular signalling. CTLA-4 is similar to CD28, a T cell co-receptor protein that recognizes the B7 proteins (CD80 and CD86). CD28 binding of the B7 proteins occurs after the presentation of antigen to the T cell receptor (TCR) via the peptide-MHC complex on the surface of an antigen presenting cell (APC). CTLA-4 also binds the B7 molecules with a higher affinity than does CD28. The B7/CTLA-4 interaction generates inhibitory signals down-regulating the response, and may prevent T cell activation by weak TCR signals. CD28 and CTLA-4 then elicit opposing signals in the regulation of T cell responsiveness and homeostasis. T cell activation leads to increased
Probab=96.86 E-value=0.0095 Score=42.16 Aligned_cols=73 Identities=14% Similarity=0.115 Sum_probs=46.8
Q ss_pred ccccccccCCCcEEEEEEeecCC--C-CeeEEeeC--CEEc-------------C-CCCeeEeceEEecccceeEEEEEc
Q psy15667 8 SFIEQTLQPGPAVSLKCIASGNP--T-PDIGWTLD--GFEL-------------P-TNNRFVIGQFVSGHGDVISHVNIS 68 (286)
Q Consensus 8 ~~~~~~~~~G~~~~l~C~~~g~p--~-p~v~W~~~--~~~l-------------~-~~~~~~~~~~~~~~~~~~~~l~I~ 68 (286)
.....++.+|+.+.|.|.+.|.- . -.+.|.|. + .+ . ...++.++. . .......|.|.
T Consensus 4 ~~~~~lv~p~~sv~LsC~~sg~~~s~e~~~~wvRq~pg-~lE~c~~~~~~g~~~~~~~~r~tcs~--~-~s~ntv~L~l~ 79 (115)
T cd05721 4 QQSPVLASSNGAASLVCEYTYNGFSKEFRASLLKGADS-AVEVCAVTGNMSNQLQTSLDGFNCDG--T-LGNEQVNFTLQ 79 (115)
T ss_pred ecCCeEEcCCCCEEEEEEecCCccccEEEEEEEEeCCC-CcEEEEEEeCCCccccccCCCeEEeE--e-CCCCEEEEEEc
Confidence 34456788999999999997643 3 35778873 3 21 0 122332221 1 11223469999
Q ss_pred ccccCCCeEEEEEEEc
Q psy15667 69 HVTVEDGGEYACVAEN 84 (286)
Q Consensus 69 ~~~~~D~G~Y~C~a~n 84 (286)
+++.+|++.|.|..+.
T Consensus 80 ~L~a~DTa~Y~Ca~e~ 95 (115)
T cd05721 80 NLRANQTDIYFCKIEL 95 (115)
T ss_pred CCCHHHCeEEEEEeee
Confidence 9999999999996643
No 354
>cd05770 IgC_beta2m Class I major histocompatibility complex (MHC) beta2-microglobulin. IgC_beta2m: Immunoglobulin-like domain in beta2-Microglobulin (beta2m). Beta2m is the non-covalently bound light chain of the human class I major histocompatibility complex (MHC-I). Beta2m is structured as a beta-sandwich domain composed of two facing beta-sheets (four stranded and three stranded), that is typical of the C-type immunoglobulin superfamily. This structure is stabilized by an intramolecular disulfide bridge connecting two Cys residues in the facing beta -sheets. In vivo, MHC-I continuously exposes beta2m on the cell surface, where it may be released to plasmatic fluids, transported to the kidneys, degraded and then excreted.
Probab=96.77 E-value=0.023 Score=38.96 Aligned_cols=62 Identities=21% Similarity=0.293 Sum_probs=31.6
Q ss_pred EEEEEeeecCC-CCCeEEEEeCCeeCCCCCCceeeecCCCeeeEE---EcccCCCCCeEEEEEEEecc
Q psy15667 211 TRVICGVTHGD-PPLTIRWLKDGKPLSPRFPVNVSDLDSFSSLLS---INSVSAAHSGEYTCVASNTA 274 (286)
Q Consensus 211 ~~l~c~~~~~~-p~~~~~W~~~g~~~~~~~~~~~~~~~~~~~~L~---i~~v~~~d~G~Y~C~a~N~~ 274 (286)
..|.|.+..-. +...++|+|||..+.......+.... ..+.. --.+.+.+.-.|+|.+.-..
T Consensus 18 ~~L~C~a~gFyP~~i~v~W~~dg~~~~~~~~~~~~p~~--d~tyq~~s~l~~~~~~~~~ysC~V~H~~ 83 (93)
T cd05770 18 NVLNCYVTGFHPPDIEIRLLKNGVKIPKVEQSDLSFSK--DWTFYLLKSTEFTPTKGDEYACRVRHNS 83 (93)
T ss_pred eEEEEEEEEEeCCCCEEEEEECCEECCCcEECcEEECC--CCCEEEEEEEEECCCCCCeEEEEEEECC
Confidence 34444443322 33567899999877511111111111 11222 12345778899999987643
No 355
>cd07704 Ig2_Nectin-3-4_like Second immunoglobulin (Ig) domain of nectin-3 (also known as poliovirus receptor related protein 3), nectin-4 (poliovirus receptor related protein 4) and similar proteins. Ig2_Nectin-3-4_like: domain similar to the second immunoglobulin (Ig) domain of nectin-3 (also known as poliovirus receptor related protein 3) and nectin-4 (poliovirus receptor related protein 4). Nectin-3 and nectin-4 belong to the nectin family comprised of four transmembrane glycoproteins (nectins-1 through 4). Nectins are synaptic cell adhesion molecules (CAMs) which facilitate adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. Nectin-2 and nectin-3 localize at Sertoli-spermatid junctions where they form heterophilic trans-interactions between the cells that are essential for the formation and maintenance of the junctions and for spermatid development. Nect
Probab=96.74 E-value=0.009 Score=41.13 Aligned_cols=68 Identities=21% Similarity=0.376 Sum_probs=41.3
Q ss_pred cccCCCcEEE-EEEee-cCCCCeeEEeeCCEEcCCCCeeEeceEEecccc--eeEEEEEcccccCCCeEEEEEEEcC
Q psy15667 13 TLQPGPAVSL-KCIAS-GNPTPDIGWTLDGFELPTNNRFVIGQFVSGHGD--VISHVNISHVTVEDGGEYACVAENR 85 (286)
Q Consensus 13 ~~~~G~~~~l-~C~~~-g~p~p~v~W~~~~~~l~~~~~~~~~~~~~~~~~--~~~~l~I~~~~~~D~G~Y~C~a~n~ 85 (286)
.+.+|+.+.+ .|.+. |.|+++|+|+.+..... + ... ....++. ..+.+.+.--..+|.-.++|.+...
T Consensus 12 ~~~~g~~~~vA~C~sa~gkPaa~IsW~~~~~G~~-~--~~~--~~~~ngT~TV~S~~~l~p~r~d~G~~vtC~V~H~ 83 (97)
T cd07704 12 LIDGGNGTTLAACCAAEGRPAADVTWETNVYGTS-E--SHS--QEHPNGTTTVTSEYIWVPSRHANGHPLTCVVSHP 83 (97)
T ss_pred EeecCcceeEEEEEccCCccCCEeEEeCCCCCcc-c--eee--ecCCCCCEEEEEEEEEEeCHHHCCcEEEEEEeCc
Confidence 5689999999 99755 78999999998743321 1 100 0111222 2233555444444555999998764
No 356
>cd05768 IgC_CH4 CH4 domain (fourth constant Ig domain of the heavy chain) in immunoglobulin. IgC_CH4: The fourth immunoglobulin constant domain (IgC), of immunoglobulin (Ig) heavy chains. This domain is found on the Fc fragment. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. There are two types of light chains: kappa and lambda; each composed of a constant domain and a variable domain. There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are modular proteins, in which the variable and constant domains have clear, conserved sequence patterns.
Probab=96.68 E-value=0.0064 Score=42.51 Aligned_cols=69 Identities=23% Similarity=0.405 Sum_probs=38.7
Q ss_pred CCCCeEEEEEeeecCCCC-CeEEEEeCCeeCCCCCCce--eeec----C--CCeeeEEEcccCCCCCeEEEEEEEecc
Q psy15667 206 PEGARTRVICGVTHGDPP-LTIRWLKDGKPLSPRFPVN--VSDL----D--SFSSLLSINSVSAAHSGEYTCVASNTA 274 (286)
Q Consensus 206 ~~g~~~~l~c~~~~~~p~-~~~~W~~~g~~~~~~~~~~--~~~~----~--~~~~~L~i~~v~~~d~G~Y~C~a~N~~ 274 (286)
..|..+.|.|.+.+-.|. ..++|+|+|+.+....... .... . .....|.|..-...+...|+|.+.-..
T Consensus 14 ~~~~~~tL~C~a~gFyP~~i~v~W~k~g~~~~~~~~~~~~~~~~~~~dgTy~~~s~L~v~~~~w~~~~~ytC~V~H~~ 91 (102)
T cd05768 14 SLQETATLTCLVKGFSPSDIFVKWLQNGQPLSKQKYVTTAPMQEPGGNESYFLYSKLTVSAEDWNAGDVFTCVVGHEA 91 (102)
T ss_pred CcCCceEEEEEEeeEeCCCCEEEEEECCEECCcccccccCcccccCCCCeEEEEEEEEEcHHHhcCCCcEEEEeEeCC
Confidence 345667777777654443 5689999998875331111 0110 0 013345554333346678999987543
No 357
>cd05847 IgC_CH2_IgE CH2 domain (second constant Ig domain of the heavy chain) in immunoglobulin E (IgE). IgC_CH2_IgE: The second constant domain of the heavy chain of immunoglobulin E (IgE). The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. There are two types of light chains: kappa and lambda; each composed of a constant domain and a variable domain. There are five types of heavy chains: alpha, delta, epsilon, gamma, and mu, all consisting of a variable domain (VH) and three (in alpha, delta, and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). The different classes of antibodies vary in their heavy chains; the IgE class has the epsilon type. This domain (Cepsilon2) of IgE is in place of the flexible hinge region found in IgG.
Probab=96.64 E-value=0.011 Score=40.53 Aligned_cols=69 Identities=17% Similarity=0.336 Sum_probs=39.5
Q ss_pred CCeEEEEEeeecCCCC-CeEEEEeCCeeCCCCC-C--ceeeecC--CCeeeEEEcccCCCCCeEEEEEEEecccc
Q psy15667 208 GARTRVICGVTHGDPP-LTIRWLKDGKPLSPRF-P--VNVSDLD--SFSSLLSINSVSAAHSGEYTCVASNTAAQ 276 (286)
Q Consensus 208 g~~~~l~c~~~~~~p~-~~~~W~~~g~~~~~~~-~--~~~~~~~--~~~~~L~i~~v~~~d~G~Y~C~a~N~~g~ 276 (286)
++.+.|.|.+..-.|. ..++|+|||..+.... . ......+ .....|.|..-...+...|+|.+......
T Consensus 14 ~~~~~L~C~a~gFyP~~I~vtW~~dg~~~~~~~~~s~~~~~~~~Ty~~~S~L~v~~~~w~~~~~ytC~V~H~~~~ 88 (94)
T cd05847 14 SETIQLLCLISGYTPGTIEVEWLVDGQVATLVAASTAPQKEEGSTFSTTSELNVTQEDWKSGKTYTCKVTHQGTT 88 (94)
T ss_pred CCCEEEEEEEEeEECCCCEEEEEECCEECcCceeecccEECCCCcEEEEEEEEEchHHhcCCCeEEEEEEECCee
Confidence 4557777777654444 7889999998863321 0 0000111 11334545544344678999999876543
No 358
>cd07704 Ig2_Nectin-3-4_like Second immunoglobulin (Ig) domain of nectin-3 (also known as poliovirus receptor related protein 3), nectin-4 (poliovirus receptor related protein 4) and similar proteins. Ig2_Nectin-3-4_like: domain similar to the second immunoglobulin (Ig) domain of nectin-3 (also known as poliovirus receptor related protein 3) and nectin-4 (poliovirus receptor related protein 4). Nectin-3 and nectin-4 belong to the nectin family comprised of four transmembrane glycoproteins (nectins-1 through 4). Nectins are synaptic cell adhesion molecules (CAMs) which facilitate adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. Nectin-2 and nectin-3 localize at Sertoli-spermatid junctions where they form heterophilic trans-interactions between the cells that are essential for the formation and maintenance of the junctions and for spermatid development. Nect
Probab=96.62 E-value=0.016 Score=39.95 Aligned_cols=79 Identities=20% Similarity=0.264 Sum_probs=47.7
Q ss_pred CCCCCeEEE-EEeeecCCCCCeEEEEeCCeeCCCCCCceeeecC--CCeeeEEEcccCCCCCeEEEEEEEeccc--ceee
Q psy15667 205 LPEGARTRV-ICGVTHGDPPLTIRWLKDGKPLSPRFPVNVSDLD--SFSSLLSINSVSAAHSGEYTCVASNTAA--QARY 279 (286)
Q Consensus 205 ~~~g~~~~l-~c~~~~~~p~~~~~W~~~g~~~~~~~~~~~~~~~--~~~~~L~i~~v~~~d~G~Y~C~a~N~~g--~~~~ 279 (286)
+.+|+.+.+ .|.+..|.|++.|+|+.+..-.... .......+ .....|.+..-+..|.-.++|.+....- ....
T Consensus 13 ~~~g~~~~vA~C~sa~gkPaa~IsW~~~~~G~~~~-~~~~~~ngT~TV~S~~~l~p~r~d~G~~vtC~V~H~al~~~~~~ 91 (97)
T cd07704 13 IDGGNGTTLAACCAAEGRPAADVTWETNVYGTSES-HSQEHPNGTTTVTSEYIWVPSRHANGHPLTCVVSHPALQQDFRI 91 (97)
T ss_pred eecCcceeEEEEEccCCccCCEeEEeCCCCCccce-eeecCCCCCEEEEEEEEEEeCHHHCCcEEEEEEeCcccCCCcee
Confidence 456777777 8888889999999999874321110 00000000 1134566666667789999999988743 4444
Q ss_pred EEEEE
Q psy15667 280 SSKLQ 284 (286)
Q Consensus 280 ~~~L~ 284 (286)
+..|.
T Consensus 92 ~~~L~ 96 (97)
T cd07704 92 THILN 96 (97)
T ss_pred eEEee
Confidence 44443
No 359
>cd05767 IgC_MHC_II_alpha Class II major histocompatibility complex (MHC) alpha chain immunoglobulin domain. IgC_MHC_II_alpha: Immunoglobulin (Ig) domain of major histocompatibility complex (MHC) class II alpha chain. MHC class II molecules play a key role in the initiation of the antigen-specific immune reponse. In both humans and in mice these molecules have been shown to be expressed constitutively on the cell surface of professional antigen-presenting cells (APCs), for example on B-lymphocytes, monocytes, and macrophages. The expression of these molecules has been shown to be induced in nonprofessional APCs such as keratinocyctes, and they are expressed on the surface of activated human T cells and on T cells from other species. The MHC II molecules present antigenic peptides to CD4(+) T-lymphocytes. These peptides derive mostly from protelytic processing via the endocytic pathway, of antigens internalized by the APC. These peptides bind to the MHC class II molecules in the endosom
Probab=96.59 E-value=0.053 Score=37.21 Aligned_cols=48 Identities=23% Similarity=0.423 Sum_probs=25.4
Q ss_pred CeEEEEeCCeeCCCCCC-ceeee--cCC--CeeeEEEcccCCCCCeEEEEEEEecc
Q psy15667 224 LTIRWLKDGKPLSPRFP-VNVSD--LDS--FSSLLSINSVSAAHSGEYTCVASNTA 274 (286)
Q Consensus 224 ~~~~W~~~g~~~~~~~~-~~~~~--~~~--~~~~L~i~~v~~~d~G~Y~C~a~N~~ 274 (286)
..++|.|||..+..+.. -.... +.. ....|.+ .+++...|+|.+.-..
T Consensus 32 I~v~W~~~g~~~~~~~~~~~~~~~~Dgty~~~s~L~v---~~~~~~~ytC~V~H~~ 84 (94)
T cd05767 32 LNVTWLKNGVPVTDGVSETRYYPRQDLSFQKFSYLNF---TPEEGDIYSCIVEHWG 84 (94)
T ss_pred CEEEEEECCeEccCceEEeeeEeCCCCcEEEEEEEEE---ECCCCCeEEEEEEeCC
Confidence 56778888877643210 00000 111 1223443 3567779999997653
No 360
>PF08204 V-set_CD47: CD47 immunoglobulin-like domain; InterPro: IPR013270 This family represents the CD47 leukocyte antigen V-set like Ig domain [, ].; PDB: 2VSC_B 2JJS_D 2JJT_C.
Probab=96.58 E-value=0.014 Score=42.22 Aligned_cols=61 Identities=18% Similarity=0.348 Sum_probs=36.8
Q ss_pred CeEEEEeCCeeCCC--CC----------CceeeecCCCeeeEEEcccCCCCCeEEEEEEEecccceeeEEEEEE
Q psy15667 224 LTIRWLKDGKPLSP--RF----------PVNVSDLDSFSSLLSINSVSAAHSGEYTCVASNTAAQARYSSKLQV 285 (286)
Q Consensus 224 ~~~~W~~~g~~~~~--~~----------~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~N~~g~~~~~~~L~V 285 (286)
..+.|..+|..+.. +. +..+.....++..|.+...+.- .|+|+|.+.....+.+....|..
T Consensus 47 m~VkWk~~~~~If~~dg~~~~~~~~~f~sa~i~~l~kG~aSL~~~~~~a~-~GnYTCeVt~~~~ege~~i~Lk~ 119 (130)
T PF08204_consen 47 MYVKWKFKNKDIFIFDGTNNKSTSDNFPSAKISELLKGNASLKMDKSDAV-EGNYTCEVTELSREGETTIELKY 119 (130)
T ss_dssp EEEEEEETTEEEEEEETTTTEEEEGGGTT-BEGGGGGTB--EEEEHHHHH--EEEEEEEEETTEEEEEEEEEEE
T ss_pred EEEEEEECCeEEEEEcCccceecccCccccchhHhhCCCEEEEEcchhcc-ccceEEEEEecCCCceEEEEEEE
Confidence 45889988875521 10 0111111123345777775544 99999999998888888888875
No 361
>cd04986 IgC_CH2 CH2 domain (second constant Ig domain of the heavy chain) in immunoglobulin. IgC_CH2: The second immunoglobulin constant domain (IgC), of immunoglobulin (Ig) heavy chains. This domain is found on the Fc fragment. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. There are two types of light chains: kappa and lambda; each composed of a constant domain and a variable domain. There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are modular proteins, in which the variable and constant domains have clear, conserved sequence patterns.
Probab=96.55 E-value=0.021 Score=39.47 Aligned_cols=80 Identities=24% Similarity=0.287 Sum_probs=43.8
Q ss_pred CeeEec-cccccccCCCcEEEEEEeecC--CC-CeeEEeeCCEEcCCCCeeEeceEEecccc--eeEEEEEcccccCCCe
Q psy15667 3 PILTYS-FIEQTLQPGPAVSLKCIASGN--PT-PDIGWTLDGFELPTNNRFVIGQFVSGHGD--VISHVNISHVTVEDGG 76 (286)
Q Consensus 3 p~~~~~-~~~~~~~~G~~~~l~C~~~g~--p~-p~v~W~~~~~~l~~~~~~~~~~~~~~~~~--~~~~l~I~~~~~~D~G 76 (286)
|.+..- +....+..++.++|.|.+.+. |. -.|.|.+||+. . .... ......++. ..+.|.|..-...-..
T Consensus 4 PsV~l~pPs~e~l~~~~~atLtClV~~f~~P~~i~V~W~~~g~~-~--~~~t-~~~~~~dgTys~~S~L~v~~~~W~~g~ 79 (99)
T cd04986 4 PSLSLQRPALEDLLLGSSASLTCTLSGLRDPEGAVFTWTPSGGK-E--AVQT-SAESDQCGCYSVSSVLPGCAEEWNKGE 79 (99)
T ss_pred CEEEEECcChHHhCcCCccEEEEEEeccCCCCCeEEEEEECCcc-C--cEEc-CcccCCCCCEEEEEEEEeCHHHhcCCC
Confidence 444433 333345578999999999984 42 47899999875 1 1110 000011111 1223555433333334
Q ss_pred EEEEEEEcCC
Q psy15667 77 EYACVAENRA 86 (286)
Q Consensus 77 ~Y~C~a~n~~ 86 (286)
.|+|.+....
T Consensus 80 ~ytC~V~H~~ 89 (99)
T cd04986 80 PFACTVTHPE 89 (99)
T ss_pred eEEEEEECCC
Confidence 7999987653
No 362
>cd05769 IgC_TCR_beta T cell receptor (TCR) beta chain constant immunoglobulin domain. IgC_TCR_beta: Constant domain of the beta chain of alpha/beta T-cell antigen receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are composed of alpha and beta, or gamma and delta, polypeptide chains with variable (V) and constant (C) regions. This group includes the variable domain of the beta chain. Alpha/beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. The antigen binding site is formed by the variable domains of the alpha and beta chains, located at the N-terminus of each chain. Alpha/beta TCRs recognize antigens differently from gamma/delta TCRs.
Probab=96.51 E-value=0.019 Score=41.06 Aligned_cols=72 Identities=17% Similarity=0.336 Sum_probs=41.7
Q ss_pred CCCCeEEEEEeeecCCCC-CeEEEEeCCeeCCCCCCceeee-cC-----CCeeeEEEcccCCCC-CeEEEEEEEecccce
Q psy15667 206 PEGARTRVICGVTHGDPP-LTIRWLKDGKPLSPRFPVNVSD-LD-----SFSSLLSINSVSAAH-SGEYTCVASNTAAQA 277 (286)
Q Consensus 206 ~~g~~~~l~c~~~~~~p~-~~~~W~~~g~~~~~~~~~~~~~-~~-----~~~~~L~i~~v~~~d-~G~Y~C~a~N~~g~~ 277 (286)
.+++.+.|.|.+..-.|. ..+.|+|||..+.......... .. .....|.|..-+..| .-.|+|.+.-.....
T Consensus 16 ~~~~~~tL~Cla~gFyP~~I~V~W~kng~~l~~g~~~~~~~~~~~~gTYs~~S~L~v~~~~w~~~~~~ytC~V~H~g~~~ 95 (115)
T cd05769 16 RNKRKATLVCLATGFYPDHVSLSWKVNGKEVTDGVATDPQALRENTSTYSISSRLRVSATEWFNPRNTFTCIVQFYGGTD 95 (115)
T ss_pred ccCCCcEEEEEEEeEeCCCcEEEEEECCEECCCCcccccceecCCCCeEEEEEEEEEChHHhccCCCeEEEEEEEeCCcc
Confidence 345667888877655555 5889999998875432110001 11 113445555444333 679999887654433
No 363
>PF07654 C1-set: Immunoglobulin C1-set domain; InterPro: IPR003597 The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulphide bonds. There are two types of light chains: kappa and lambda, each composed of a constant domain (CL) and a variable domain (VL). There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are highly modular proteins, in which the variable and constant domains have clear, conserved sequence patterns. The domains in Ig and Ig-like molecules are grouped into four types: V-set (variable; IPR013106 from INTERPRO), C1-set (constant-1; IPR003597 from INTERPRO), C2-set (constant-2; IPR008424 from INTERPRO) and I-set (intermediate; IPR013098 from INTERPRO) []. Structural studies have shown that these domains share a common core Greek-key beta-sandwich structure, with the types differing in the number of strands in the beta-sheets as well as in their sequence patterns [, ]. Immunoglobulin-like domains that are related in both sequence and structure can be found in several diverse protein families. Ig-like domains are involved in a variety of functions, including cell-cell recognition, cell-surface receptors, muscle structure and the immune system []. This entry represents C1-set domains, which are classical Ig-like domains resembling the antibody constant domain. C1-set domains are found almost exclusively in molecules involved in the immune system, such as in immunoglobulin light and heavy chains, in the major histocompatibility complex (MHC) class I and II complex molecules [, ], and in various T-cell receptors.; PDB: 3BVN_D 3BXN_A 3PWV_E 3L9R_F 2XFX_B 1BMG_A 1K8I_A 3M1B_G 3M17_C 1EXU_A ....
Probab=96.34 E-value=0.029 Score=37.45 Aligned_cols=65 Identities=25% Similarity=0.481 Sum_probs=36.4
Q ss_pred CCeEEEEEeeecCCCC-CeEEEEeCCeeCCCCCCceeee--cCC---CeeeEEEcccCCCCCeEEEEEEEeccc
Q psy15667 208 GARTRVICGVTHGDPP-LTIRWLKDGKPLSPRFPVNVSD--LDS---FSSLLSINSVSAAHSGEYTCVASNTAA 275 (286)
Q Consensus 208 g~~~~l~c~~~~~~p~-~~~~W~~~g~~~~~~~~~~~~~--~~~---~~~~L~i~~v~~~d~G~Y~C~a~N~~g 275 (286)
++.+.|.|.+..-.|. ..+.|+++|..+.......... .++ ....|.+. ..+...|+|.+.....
T Consensus 8 ~~~~~L~C~v~~f~P~~i~v~W~~~~~~~~~~~~~~~~~~~~dgty~~~s~l~v~---~~~~~~ysC~V~H~~l 78 (83)
T PF07654_consen 8 GGSVTLTCLVSGFYPKDITVTWLKNGKEVTEGVETTPPPPNSDGTYSVTSSLTVT---WNSGDEYSCRVTHESL 78 (83)
T ss_dssp TSEEEEEEEEEEEBSSTEEEEEEETTEEETTTEEEEEEEEETTSEEEEEEEEEEE---TTTTGGEEEEEEETTS
T ss_pred CCCEEEEEEEEEEECCCcEEEEEeccceeeeeeeecccccccccceeeeEEEEec---CCCCCEEEEEEEECCC
Confidence 4555556655543333 4688999988775432211111 111 12344444 6677799999987654
No 364
>cd07696 IgC_CH3 CH3 domain (third constant Ig domain of the heavy chain) in immunoglobulin. IgC_CH3: The third immunoglobulin constant domain (IgC) of immunoglobulin (Ig) heavy chains. This domain is found on the Fc fragment. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. There are two types of light chains: kappa and lambda; each composed of a constant domain and a variable domain. There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are modular proteins, in which the variable and constant domains have clear, conserved sequence patterns.
Probab=96.33 E-value=0.031 Score=38.52 Aligned_cols=71 Identities=14% Similarity=0.218 Sum_probs=37.1
Q ss_pred CCCCCeEEEEEeeecC--CCCCeEEEEeCCeeCCCC-CCceeeecC---CCeeeEEEcccCCCCCeEEEEEEEeccc
Q psy15667 205 LPEGARTRVICGVTHG--DPPLTIRWLKDGKPLSPR-FPVNVSDLD---SFSSLLSINSVSAAHSGEYTCVASNTAA 275 (286)
Q Consensus 205 ~~~g~~~~l~c~~~~~--~p~~~~~W~~~g~~~~~~-~~~~~~~~~---~~~~~L~i~~v~~~d~G~Y~C~a~N~~g 275 (286)
+..|+.+.|.|.+..- ++...++|.|++...... ........+ .....|.+..-...+.-.|+|.+.-..-
T Consensus 11 l~~~~~~tLtC~v~gf~yP~~i~v~W~r~~~~~~~~~~~~~~~~~dgty~~~s~l~v~~~~w~~g~~ysC~V~H~~l 87 (96)
T cd07696 11 LLLTKSVKLTCLVTNLTSPEGVNVTWTRGSGEPVKASIQPPESHNNATLSVTSTLNVSTDDWISGDTFQCKVTHPDL 87 (96)
T ss_pred hccCCCeEEEEEEeCCCCCCCcEEEEEECCeEeeeEEecccccCCCCCEEEEEEEEeCHHHccCCCcEEEEEECCCC
Confidence 4456777788877655 344678999987432110 000000000 1123344443333346689999986643
No 365
>cd07689 Ig2_VCAM-1 Second immunoglobulin (Ig)-like domain of vascular endothelial cell adhesion molecule-1 (VCAM-1, CD106) and intercellular cell adhesion molecule-1 (ICAM-1, CD54) and similar proteins. Ig2_ VCAM-1_like: domain similar to the second immunoglobulin (Ig)-like domain of vascular endothelial cell adhesion molecule-1 (VCAM-1, CD106). During the inflammation process, these molecules recruit leukocytes onto the vascular endothelium before extravasation to the injured tissues. The interaction of VCAM-1 binding to the beta1 integrin very late antigen (VLA-4) expressed by lymphocytes and monocytes mediates the adhesion of leucocytes to blood vessel walls, and regulates migration across the endothelium. During metastasis, some circulating cancer cells extravasate to a secondary site by a similar process. VCAM-1 may be involved in organ targeted tumor metastasis and may also act as host receptors for viruses and parasites. VCAM-1 contains seven Ig domains.
Probab=96.32 E-value=0.034 Score=38.17 Aligned_cols=70 Identities=24% Similarity=0.301 Sum_probs=43.8
Q ss_pred CCCCCeEEEEEeeecCCCC--CeEEEEeCCeeCCCCCCce-ee--ecCCCeeeEEEcccCCCCCe-EEEEEEEeccc
Q psy15667 205 LPEGARTRVICGVTHGDPP--LTIRWLKDGKPLSPRFPVN-VS--DLDSFSSLLSINSVSAAHSG-EYTCVASNTAA 275 (286)
Q Consensus 205 ~~~g~~~~l~c~~~~~~p~--~~~~W~~~g~~~~~~~~~~-~~--~~~~~~~~L~i~~v~~~d~G-~Y~C~a~N~~g 275 (286)
+.+|..+.+.|.+....|. ..+.|+|+...+....-.. +. ........+++.. ..+|.| .|+|.|.-.++
T Consensus 12 l~~G~~vtv~C~v~~v~P~~~l~v~LlkG~~~l~~~~f~~~~~~ks~~~~~~~vtftp-treD~g~~fsC~A~L~l~ 87 (99)
T cd07689 12 LEEGKPVTVKCEVPDVYPFDRLEIELLKGETLLPSKSFLEDMDKKSLETKSLEVTFTP-TIEDIGKVLVCRAKLHID 87 (99)
T ss_pred ccCCceEEEEEEecCcccCCceEEEEecCcceecccccccccccCCCCCcceeEEEec-chhhCCcEEEEEEEEeec
Confidence 5688999999988766666 7799999776653221100 00 0001123455544 477766 99999987665
No 366
>PHA02982 hypothetical protein; Provisional
Probab=96.16 E-value=0.14 Score=39.94 Aligned_cols=72 Identities=13% Similarity=0.204 Sum_probs=43.7
Q ss_pred CCcceEEEccCCCCCCeeEEEEEEcCCcceeeeeeEEEEcCCCceecCCceEEecCCC-EEEEeeEeeecCCeEEEEE
Q psy15667 114 TSSTSLVINPVGREDRGIYQCIARRSDGDVAQGSAELQLGGLPYVRLIPKVTAIDGEG-LSIKCPVAGYPIEEVHWEK 190 (286)
Q Consensus 114 ~~~~~l~i~~v~~~d~G~Y~C~a~~~~g~~~~~~~~l~v~~~~~~~~~~~~~~~~g~~-~~l~c~~~~~p~~~v~w~~ 190 (286)
...++|+|.++..+..|.|+|+++...+......--|.|+.-. +. ....++.+ ..+.|-+-....+-..|.-
T Consensus 97 g~~STLTIkk~~i~N~GCYtc~~ks~~~k~E~c~kCl~V~~~~-V~----~~W~e~nNeT~V~CyVgS~~~dvp~W~V 169 (251)
T PHA02982 97 GNSSTFTMKKPDPQNLGCFTCEAKDAEGKEETCEKCLEIQKED-IL----YVVEEHNNETIITCFVGSKHGDVPRFIV 169 (251)
T ss_pred ccceeEEeccCCcccCCceEEEEecCCCchheeheeeeEecce-EE----EEEEecCCeEEEEEEEEeccCCCccEEE
Confidence 3567899999999999999999998765544434444442111 10 11113333 4577887665444335654
No 367
>cd07689 Ig2_VCAM-1 Second immunoglobulin (Ig)-like domain of vascular endothelial cell adhesion molecule-1 (VCAM-1, CD106) and intercellular cell adhesion molecule-1 (ICAM-1, CD54) and similar proteins. Ig2_ VCAM-1_like: domain similar to the second immunoglobulin (Ig)-like domain of vascular endothelial cell adhesion molecule-1 (VCAM-1, CD106). During the inflammation process, these molecules recruit leukocytes onto the vascular endothelium before extravasation to the injured tissues. The interaction of VCAM-1 binding to the beta1 integrin very late antigen (VLA-4) expressed by lymphocytes and monocytes mediates the adhesion of leucocytes to blood vessel walls, and regulates migration across the endothelium. During metastasis, some circulating cancer cells extravasate to a secondary site by a similar process. VCAM-1 may be involved in organ targeted tumor metastasis and may also act as host receptors for viruses and parasites. VCAM-1 contains seven Ig domains.
Probab=96.00 E-value=0.051 Score=37.32 Aligned_cols=71 Identities=24% Similarity=0.308 Sum_probs=40.3
Q ss_pred cccCCCcEEEEEEeec-CCC--CeeEEeeCCEEcCCCCeeEeceEEecccceeEEEEEcccccCCCe-EEEEEEEcC
Q psy15667 13 TLQPGPAVSLKCIASG-NPT--PDIGWTLDGFELPTNNRFVIGQFVSGHGDVISHVNISHVTVEDGG-EYACVAENR 85 (286)
Q Consensus 13 ~~~~G~~~~l~C~~~g-~p~--p~v~W~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~I~~~~~~D~G-~Y~C~a~n~ 85 (286)
.+.+|..++++|.+.+ .|. ..|.|++....+.... +...............+++.- +.+|.| .|+|+|.-.
T Consensus 11 ~l~~G~~vtv~C~v~~v~P~~~l~v~LlkG~~~l~~~~-f~~~~~~ks~~~~~~~vtftp-treD~g~~fsC~A~L~ 85 (99)
T cd07689 11 PLEEGKPVTVKCEVPDVYPFDRLEIELLKGETLLPSKS-FLEDMDKKSLETKSLEVTFTP-TIEDIGKVLVCRAKLH 85 (99)
T ss_pred cccCCceEEEEEEecCcccCCceEEEEecCcceecccc-cccccccCCCCCcceeEEEec-chhhCCcEEEEEEEEe
Confidence 4589999999999985 454 5788987665554322 110000000001011233322 477887 999999764
No 368
>KOG0613|consensus
Probab=95.98 E-value=0.023 Score=55.38 Aligned_cols=220 Identities=10% Similarity=-0.007 Sum_probs=117.4
Q ss_pred CCcEEEEEEeecCCCCeeEEeeCCEEcCCCCeeEeceEEecccceeEEEEEcccccCCCeEEEEEEEcCCEEEEEecCCC
Q psy15667 17 GPAVSLKCIASGNPTPDIGWTLDGFELPTNNRFVIGQFVSGHGDVISHVNISHVTVEDGGEYACVAENRAGTCEITPYDS 96 (286)
Q Consensus 17 G~~~~l~C~~~g~p~p~v~W~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~I~~~~~~D~G~Y~C~a~n~~g~~~~~~~~~ 96 (286)
++...+-=...|.|.+.+.|+.+|..+..++.+.+..... + ..+.|...-..+.|.|.-.+-|..+.-
T Consensus 204 ~e~~v~~v~s~gqp~~~~~~~~~g~~i~~~~~~~~s~t~e---~--s~~~i~~~l~~~~G~~~~~~~~~l~e~------- 271 (1205)
T KOG0613|consen 204 YESRVRAVVSAGQPEPLERWEILGELIAPGSAPSMSVTLE---A--SDRKIQLTLRAPRGPYSAHILGYLIEQ------- 271 (1205)
T ss_pred cceeEEEEEecCCCccchhhhhcccccCCCCccccccccc---h--hheeeeEEeecCCCchHHHHhcchhhh-------
Confidence 3444444445688999999999999887766654422111 1 124445555555555543222211111
Q ss_pred CCeeEEEeeCCccCcCCCCcceEEEccCCCCCCeeEEEEEEcCCcceeeeeeEEEEcCCCceecCCceEEecCCCEEEEe
Q psy15667 97 GPYLIAWFKDGRQIPGRTSSTSLVINPVGREDRGIYQCIARRSDGDVAQGSAELQLGGLPYVRLIPKVTAIDGEGLSIKC 176 (286)
Q Consensus 97 ~~~~~~W~~~g~~l~~~~~~~~l~i~~v~~~d~G~Y~C~a~~~~g~~~~~~~~l~v~~~~~~~~~~~~~~~~g~~~~l~c 176 (286)
..........|.+-..++.+.|+|...+..+.... .+.-.+.............+.
T Consensus 272 --------------~~~~~~~t~~i~~~~~~~~~s~t~~~~~~~~q~~~-~v~~~~~i~~~~~~p~~~~~a--------- 327 (1205)
T KOG0613|consen 272 --------------RKHKGGNTKTIQNDGPEPELSWTVADKRQGCQDRF-KVTEEAPIGKGKPGPESLQAA--------- 327 (1205)
T ss_pred --------------cccCCCccccccccCCccccceeeecccCCcccce-eeeEEeeccccccCchhhhhh---------
Confidence 00122345667777788889999999888776532 111111100000000000000
Q ss_pred eEeeecCCeEEEEEcCCcccccccccCCCCCCCeEEEEEeeecCCCCCeEEEEeCCeeCCCCCCceeee-cCCCeeeEEE
Q psy15667 177 PVAGYPIEEVHWEKVPPKIESFAFPFDGLPEGARTRVICGVTHGDPPLTIRWLKDGKPLSPRFPVNVSD-LDSFSSLLSI 255 (286)
Q Consensus 177 ~~~~~p~~~v~w~~~~~~~~~~~~~~~~~~~g~~~~l~c~~~~~~p~~~~~W~~~g~~~~~~~~~~~~~-~~~~~~~L~i 255 (286)
+ ..|+ .+ ............+.+..+.+.|......++-.+.|++++..........+.. .......+.|
T Consensus 328 -a-a~~~-~~-------~v~~~~~~~v~a~d~~~v~m~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~ts~~~~~ 397 (1205)
T KOG0613|consen 328 -A-ARPP-EV-------PVGLVRNLSVTARDNTLVEMPTALSGTQKPDEAQGYHGEEVSSESLGALPCPVGTVTSHTYTI 397 (1205)
T ss_pred -c-cCCc-cc-------cccccccceeccccCcceeecccccCCcCCchheeecccccccccccccccccccccCcchhh
Confidence 0 0000 00 0000011123345667788888776444445589999887665443211111 1234567889
Q ss_pred cccCCCCCeEEEEEEEecccceeeEEE
Q psy15667 256 NSVSAAHSGEYTCVASNTAAQARYSSK 282 (286)
Q Consensus 256 ~~v~~~d~G~Y~C~a~N~~g~~~~~~~ 282 (286)
..+...+.+.|.|.|.|..|.......
T Consensus 398 ~~~~~~e~~~~~~~a~n~~g~~~~~~~ 424 (1205)
T KOG0613|consen 398 KDAGPGEGYFTRVPAVNKGGTEQTIAE 424 (1205)
T ss_pred hhcCcccccccccceeccCCcccccch
Confidence 999999999999999999997665443
No 369
>PF07354 Sp38: Zona-pellucida-binding protein (Sp38); InterPro: IPR010857 This family contains a number of zona-pellucida-binding proteins that seem to be restricted to mammals. These are sperm proteins that bind to the 90 kDa family of zona pellucida glycoproteins in a calcium-dependent manner []. These represent some of the specific molecules that mediate the first steps of gamete interaction, allowing fertilisation to occur [].; GO: 0007339 binding of sperm to zona pellucida, 0005576 extracellular region
Probab=95.95 E-value=0.011 Score=47.67 Aligned_cols=48 Identities=33% Similarity=0.539 Sum_probs=35.9
Q ss_pred CCeEEEEe-CCeeCCCCCCceeeecCCCeeeEEEcccCCCCCeEEEEEEEecc
Q psy15667 223 PLTIRWLK-DGKPLSPRFPVNVSDLDSFSSLLSINSVSAAHSGEYTCVASNTA 274 (286)
Q Consensus 223 ~~~~~W~~-~g~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~N~~ 274 (286)
-|.+.|.. +|+.+.....++++. .+.|.+.+...+++|.|+|...-..
T Consensus 12 DP~y~W~GP~g~~l~gn~~~nIT~----TG~L~~~~F~esmSG~YTCtLsYk~ 60 (271)
T PF07354_consen 12 DPTYLWTGPNGKPLSGNSYVNITE----TGKLMFKNFQESMSGSYTCTLSYKP 60 (271)
T ss_pred CCceEEECCCCcccCCCCeEEEcc----CceEEeeccccccCCceEEEEEEEe
Confidence 46788985 455666555666654 5679999999999999999866543
No 370
>PHA03270 envelope glycoprotein C; Provisional
Probab=95.92 E-value=0.25 Score=42.93 Aligned_cols=65 Identities=20% Similarity=0.346 Sum_probs=38.1
Q ss_pred cceEEEccCCCCCCeeEEEEEEcCCcce-eeeeeEEEEcCCCceecCCceEEecCCCEEEEeeEeee
Q psy15667 116 STSLVINPVGREDRGIYQCIARRSDGDV-AQGSAELQLGGLPYVRLIPKVTAIDGEGLSIKCPVAGY 181 (286)
Q Consensus 116 ~~~l~i~~v~~~d~G~Y~C~a~~~~g~~-~~~~~~l~v~~~~~~~~~~~~~~~~g~~~~l~c~~~~~ 181 (286)
...|.|..++...+|.|+=...+..+.. ......+.++..|.+.+.+ -.++.|++..-.|.+..+
T Consensus 181 ~~~L~I~slt~aTeGvY~Wr~~~~~~~~~~~~~VtV~~yr~Psvsv~~-~PvL~Ge~Y~AtC~va~Y 246 (466)
T PHA03270 181 TQRLVIQELTLATQGMYYWARGPADRPHRYGTWTRVRMFRRPSLSIRP-HAVLEGEPFGATCVAANY 246 (466)
T ss_pred cceEEEEEcccccceEEEEEEecCCCceeeeeEEEEEEecCCcccccC-CccccCCCceEEEEeeee
Confidence 4569999999999999998877655532 1223444445555433222 123345555555555443
No 371
>PHA03269 envelope glycoprotein C; Provisional
Probab=95.92 E-value=0.19 Score=44.25 Aligned_cols=63 Identities=16% Similarity=0.156 Sum_probs=34.1
Q ss_pred ceEEEccCCCCCCeeEEEEEEcCC-c-ceeeeeeEEEEcCCCceecCCceEEecCCCEEEEeeEee
Q psy15667 117 TSLVINPVGREDRGIYQCIARRSD-G-DVAQGSAELQLGGLPYVRLIPKVTAIDGEGLSIKCPVAG 180 (286)
Q Consensus 117 ~~l~i~~v~~~d~G~Y~C~a~~~~-g-~~~~~~~~l~v~~~~~~~~~~~~~~~~g~~~~l~c~~~~ 180 (286)
-.|.|..++..++|.|+=...+.. + ........+.++..|.+.+.+ -.++.|++..-.|.+..
T Consensus 289 ~pL~I~sltaATeGvY~Wrv~~~~n~t~~~~~~VtV~~yr~PsVsV~p-~PVL~Ge~YkAtC~vA~ 353 (566)
T PHA03269 289 FSLHILSLDASTEGTYIWRVIHTANKNVINEHHITVMSYKRPNITVIG-DPVLLGNPYAAYCKVNK 353 (566)
T ss_pred cceEEeecccccCceEEEEEecCCCCceeeeeEEEEEEecCCCccccC-CccccCCCceEEEEeee
Confidence 469999999999999985554322 1 112223445555555332221 12334555555555544
No 372
>PHA02633 hypothetical protein; Provisional
Probab=95.92 E-value=0.028 Score=34.70 Aligned_cols=38 Identities=21% Similarity=0.354 Sum_probs=27.3
Q ss_pred CcceEEEccCCCCCCeeEEEEEEcCCcceeeeeeEEEEc
Q psy15667 115 SSTSLVINPVGREDRGIYQCIARRSDGDVAQGSAELQLG 153 (286)
Q Consensus 115 ~~~~l~i~~v~~~d~G~Y~C~a~~~~g~~~~~~~~l~v~ 153 (286)
....|.|.++..+|+|.|.|..+|..- ....++.|.|.
T Consensus 16 ~~~nLwilpa~~sDSGiYiC~~rn~t~-c~~~si~l~V~ 53 (63)
T PHA02633 16 NCNNMLILNPTQSDSGIYMCITKNETY-SDMMKFDLCIC 53 (63)
T ss_pred ccccEEEeccccccCcEEEEEEcCCCe-eEEEEEEEEEe
Confidence 446799999999999999999987532 22334555553
No 373
>PHA03271 envelope glycoprotein C; Provisional
Probab=95.91 E-value=0.55 Score=40.68 Aligned_cols=25 Identities=28% Similarity=0.377 Sum_probs=19.2
Q ss_pred CcceEEEccCCCCCCeeEEEEEEcC
Q psy15667 115 SSTSLVINPVGREDRGIYQCIARRS 139 (286)
Q Consensus 115 ~~~~l~i~~v~~~d~G~Y~C~a~~~ 139 (286)
....|.|.+|+..|+|.|.-...+.
T Consensus 205 ~~m~v~I~svD~~t~Gy~~v~~~d~ 229 (490)
T PHA03271 205 NTMGVEIRNVDYADNGYIQVIMRDP 229 (490)
T ss_pred ceeeEEEEEeecccceEEEEEecCC
Confidence 3467999999999999776555553
No 374
>cd07697 IgC_TCR_gamma T cell receptor (TCR) gamma chain constant immunoglobulin domain. IgC_TCR_gamma; immunoglobulin (Ig) constant (C) domain of the gamma chain of gamma-delta T-cell receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are heterodimers consisting of alpha and beta chains or gamma and delta chains. Each chain contains a variable (V) and a constant (C) region. The majority of T cells contain alpha-beta TCRs but a small subset contain gamma-delta TCRs. Alpha-beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. Gamma-delta TCRs recognize intact protein antigens; they recognize protein antigens directly and without antigen processing, and MHC independently of the bound peptide. Gamma-delta T cells can also be stimulated by non-peptide antigens such as small phosphate- or amine-containing compounds.
Probab=95.90 E-value=0.041 Score=37.90 Aligned_cols=30 Identities=13% Similarity=0.301 Sum_probs=19.8
Q ss_pred CCeEEEEEeeecCCC-CCeEEEEeCCeeCCC
Q psy15667 208 GARTRVICGVTHGDP-PLTIRWLKDGKPLSP 237 (286)
Q Consensus 208 g~~~~l~c~~~~~~p-~~~~~W~~~g~~~~~ 237 (286)
++.+.|.|.+..-.| ...++|.|||..+..
T Consensus 16 ~~~~tL~C~a~gFyP~~I~v~W~kng~~~~~ 46 (96)
T cd07697 16 QGQGIYLCLLENFFPDVIQVHWREGNSPSIL 46 (96)
T ss_pred CCCEEEEEEEEEEeCCCeEEEEEECCEECcC
Confidence 455667776654333 467899999987643
No 375
>cd05721 IgV_CTLA-4 Immunoglobulin (Ig) domain of cytotoxic T lymphocyte-associated antigen 4 (CTLA-4). IgV_CTLA-4: domain similar to the variable(v)-type immunoglobulin (Ig) domain found in cytotoxic T lymphocyte-associated antigen 4 (CTLA-4). CTLA-4 is involved in the regulation of T cell response, acting as an inhibitor of intracellular signalling. CTLA-4 is similar to CD28, a T cell co-receptor protein that recognizes the B7 proteins (CD80 and CD86). CD28 binding of the B7 proteins occurs after the presentation of antigen to the T cell receptor (TCR) via the peptide-MHC complex on the surface of an antigen presenting cell (APC). CTLA-4 also binds the B7 molecules with a higher affinity than does CD28. The B7/CTLA-4 interaction generates inhibitory signals down-regulating the response, and may prevent T cell activation by weak TCR signals. CD28 and CTLA-4 then elicit opposing signals in the regulation of T cell responsiveness and homeostasis. T cell activation leads to increased
Probab=95.85 E-value=0.064 Score=38.00 Aligned_cols=82 Identities=17% Similarity=0.188 Sum_probs=45.8
Q ss_pred eEEecCCCEEEEeeEeeecC---CeEEEEEcCCcccccccccCCCCCCCeEEEEEeeecCCCCCeEEEEeCCeeCCCCCC
Q psy15667 164 VTAIDGEGLSIKCPVAGYPI---EEVHWEKVPPKIESFAFPFDGLPEGARTRVICGVTHGDPPLTIRWLKDGKPLSPRFP 240 (286)
Q Consensus 164 ~~~~~g~~~~l~c~~~~~p~---~~v~w~~~~~~~~~~~~~~~~~~~g~~~~l~c~~~~~~p~~~~~W~~~g~~~~~~~~ 240 (286)
+.+..|..++|.|.++|.-. -.++|.|..+. . .-.|......-. ...|.++.
T Consensus 8 ~lv~p~~sv~LsC~~sg~~~s~e~~~~wvRq~pg-~---------------lE~c~~~~~~g~-~~~~~~~r-------- 62 (115)
T cd05721 8 VLASSNGAASLVCEYTYNGFSKEFRASLLKGADS-A---------------VEVCAVTGNMSN-QLQTSLDG-------- 62 (115)
T ss_pred eEEcCCCCEEEEEEecCCccccEEEEEEEEeCCC-C---------------cEEEEEEeCCCc-cccccCCC--------
Confidence 44567888999999977433 35888874322 1 112222100000 11133222
Q ss_pred ceeeec-CCCeeeEEEcccCCCCCeEEEEEE
Q psy15667 241 VNVSDL-DSFSSLLSINSVSAAHSGEYTCVA 270 (286)
Q Consensus 241 ~~~~~~-~~~~~~L~i~~v~~~d~G~Y~C~a 270 (286)
..++.. ....-.|.|.+++.+|++.|.|.-
T Consensus 63 ~tcs~~~s~ntv~L~l~~L~a~DTa~Y~Ca~ 93 (115)
T cd05721 63 FNCDGTLGNEQVNFTLQNLRANQTDIYFCKI 93 (115)
T ss_pred eEEeEeCCCCEEEEEEcCCCHHHCeEEEEEe
Confidence 112211 123557999999999999999954
No 376
>PF02480 Herpes_gE: Alphaherpesvirus glycoprotein E; InterPro: IPR003404 Glycoprotein E (gE) of Alphaherpesvirus forms a complex with glycoprotein I (gI), functioning as an immunoglobulin G (IgG) Fc binding protein. gE is involved in virus spread but is not essential for propagation [].; GO: 0016020 membrane; PDB: 2GJ7_F 2GIY_B.
Probab=95.81 E-value=0.031 Score=49.62 Aligned_cols=148 Identities=17% Similarity=0.211 Sum_probs=44.6
Q ss_pred cceEEEccCCCCCCeeEEEEEEcCCcceeeeeeEEEEcCCCce--------ecCC------------ceE-EecCCCEEE
Q psy15667 116 STSLVINPVGREDRGIYQCIARRSDGDVAQGSAELQLGGLPYV--------RLIP------------KVT-AIDGEGLSI 174 (286)
Q Consensus 116 ~~~l~i~~v~~~d~G~Y~C~a~~~~g~~~~~~~~l~v~~~~~~--------~~~~------------~~~-~~~g~~~~l 174 (286)
.+.|.|.+++.+|+|.|+-...+..+......+.|.|...... ...+ ... ...|+++.+
T Consensus 88 ~~~l~i~~a~~~~~GvY~l~~~~~~~~~~~~~~~v~v~~~~~~~~~p~p~~p~~p~~~~~~~~~~~~~s~vf~~Gdtf~~ 167 (439)
T PF02480_consen 88 KGGLSILNATEQDSGVYTLYVRNDSGWAHQSVVFVTVKGPAPDPRTPPPHHPIVPHRHGATFHLKNYHSHVFSPGDTFHL 167 (439)
T ss_dssp ----------------------------------------------------------SEEEEEE--SEEE--TT--EE-
T ss_pred CCceEEeccccccCeeEEEEecCCCCceEEEEEEEEEcCCCcCCCCCCCCCCCCCcccccEEEEeccceEEecCCCcEEE
Confidence 4679999999999999999998776665444556666432111 0111 112 236888877
Q ss_pred EeeEeeecC------CeEEEEEcCCcc-------------------------cccc--cccCCCCCCCeEEEEEeeecCC
Q psy15667 175 KCPVAGYPI------EEVHWEKVPPKI-------------------------ESFA--FPFDGLPEGARTRVICGVTHGD 221 (286)
Q Consensus 175 ~c~~~~~p~------~~v~w~~~~~~~-------------------------~~~~--~~~~~~~~g~~~~l~c~~~~~~ 221 (286)
.-....... ..+.|...+... ..+. .+......+.+....|....
T Consensus 168 ~v~l~~~~~d~~~f~~~i~W~~~~~~~~C~~~riYE~CifHP~~p~Cl~P~~~~C~f~s~~~a~~~~~~~y~~C~~~~-- 245 (439)
T PF02480_consen 168 SVHLQSEAHDDPPFSLEIDWYYMPTDPSCAEMRIYEPCIFHPHAPECLHPADARCSFASPLRAERLASRRYANCSPSG-- 245 (439)
T ss_dssp --EEEEEESSS--EEEEEEEEEE---TT-SEEEEEHHHHH-TTSHHHHS-TTGGGEES----SS-SEEEEEEEEBTTC--
T ss_pred eEEEEeccCCCCCeeEEEEEEEecCCCCCceEEEeeecccCCCCccccCCCCCCceeecchhHHHHHHHhhcCCCCCC--
Confidence 766544322 257788732210 1121 12355778899999996431
Q ss_pred CCCeEEEEeCCeeCCCC-CCceeeecCCCeeeEEEcccCCCCCeEEEEEEEe
Q psy15667 222 PPLTIRWLKDGKPLSPR-FPVNVSDLDSFSSLLSINSVSAAHSGEYTCVASN 272 (286)
Q Consensus 222 p~~~~~W~~~g~~~~~~-~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~N 272 (286)
|.++....... ....+.. ...+..|.+.++...++|.|.|.+.=
T Consensus 246 ------~~~~C~~~~~~~~~~~~~~-~~~~~~l~f~~a~~~~sGLYv~V~~~ 290 (439)
T PF02480_consen 246 ------WPRRCPSTSHIEPVPGLRW-ASNGVDLQFTNAPESASGLYVFVVYY 290 (439)
T ss_dssp -------TTTTEEEEEE---TTEEE--TTSSSEEESS--GGG-EEEEEEEEE
T ss_pred ------CcCCCCchhccCcCccccc-cCCCcceEecCCCcccCceEEEEEEE
Confidence 44444211000 0111111 12345689999999999999998753
No 377
>PF11465 Receptor_2B4: Natural killer cell receptor 2B4; InterPro: IPR024303 2B4 is a transmembrane receptor which is expressed primarily on natural killer (NK) cells. It plays a role in activating NK-mediated cytotoxicity through its interaction with CD48 on target cells in a subset of CD8 T cells []. The structure of 2B4 consists of an immunoglobulin variable domain fold and contains two beta-sheets. One of the beta-sheets, the six-stranded sheet, contains structural features that may have a role in ligand recognition and receptor function []. This entry represents the 2B4 immunoglobulin domain.; GO: 0005488 binding; PDB: 2PTU_D 2PTT_B 1Z2K_A.
Probab=95.68 E-value=0.057 Score=37.39 Aligned_cols=28 Identities=21% Similarity=0.294 Sum_probs=23.7
Q ss_pred eeeEEEcccCCCCCeEEEEEEEecccce
Q psy15667 250 SSLLSINSVSAAHSGEYTCVASNTAAQA 277 (286)
Q Consensus 250 ~~~L~i~~v~~~d~G~Y~C~a~N~~g~~ 277 (286)
+-.|.|..+++.|+|.|.-+.+|..|.+
T Consensus 70 nlaLlIkaAq~qDSG~Y~LEvT~~sG~V 97 (108)
T PF11465_consen 70 NLALLIKAAQPQDSGLYCLEVTNESGKV 97 (108)
T ss_dssp TTEEEESS-SGGG-EEEEEEEEETTSCE
T ss_pred CceEEEeecCcccCceEEEEEEcCCCcE
Confidence 5689999999999999999999999866
No 378
>PHA02914 Immunoglobulin-like domain protein; Provisional
Probab=95.41 E-value=0.18 Score=43.21 Aligned_cols=79 Identities=27% Similarity=0.443 Sum_probs=51.1
Q ss_pred eccccccccCCCcEEEEEEee--cC-CCCeeEEeeCCEEcC-----------------CCCeeEeceEEecccc-eeEEE
Q psy15667 7 YSFIEQTLQPGPAVSLKCIAS--GN-PTPDIGWTLDGFELP-----------------TNNRFVIGQFVSGHGD-VISHV 65 (286)
Q Consensus 7 ~~~~~~~~~~G~~~~l~C~~~--g~-p~p~v~W~~~~~~l~-----------------~~~~~~~~~~~~~~~~-~~~~l 65 (286)
..+.++++..|..+.|.|... |+ ....++|.--|-++. .+..|.++..-.-..+ ..++|
T Consensus 269 k~~~~~~~~~g~~v~~~c~~s~~~~e~i~~~~w~~t~~~~~~~~g~~~~~~~v~~~~~~~~~~~i~~~~~~s~dlk~STL 348 (500)
T PHA02914 269 KKFDEVMLEVGKRVDIECFFSMCGNENISNAKWIDTGFEIGPLIGTVKSKDIVEGDFAEDDDFMISAHANYSDDLKNSTL 348 (500)
T ss_pred cccceeEeccCcEEEEEEEEeecCCcccccceEEecCCcccceeEEEEecceeecccccCCceEEEEecccccchhhceE
Confidence 345677889999999999755 44 345788975543321 2233443221111122 24569
Q ss_pred EEcccccCCCeEEEEEEEcC
Q psy15667 66 NISHVTVEDGGEYACVAENR 85 (286)
Q Consensus 66 ~I~~~~~~D~G~Y~C~a~n~ 85 (286)
+|.++.....|.|+|+|...
T Consensus 349 TIkka~I~N~GCY~~~a~~g 368 (500)
T PHA02914 349 TIKKAHINNAGCYEAQAFMG 368 (500)
T ss_pred EeeeEEEEcCCceEEEEecC
Confidence 99999999999999999753
No 379
>KOG4597|consensus
Probab=95.32 E-value=0.029 Score=48.90 Aligned_cols=80 Identities=20% Similarity=0.199 Sum_probs=54.4
Q ss_pred CCCCCCeEEEEEeeecCCCCCeEEEEe---CCeeC--CCCCCceeeecCCCeeeEEEcccCCCCCeEEEEEEEeccccee
Q psy15667 204 GLPEGARTRVICGVTHGDPPLTIRWLK---DGKPL--SPRFPVNVSDLDSFSSLLSINSVSAAHSGEYTCVASNTAAQAR 278 (286)
Q Consensus 204 ~~~~g~~~~l~c~~~~~~p~~~~~W~~---~g~~~--~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~N~~g~~~ 278 (286)
.+.+++..+++|.+. |.+.+.|.|.+ ++..+ +..+.+.- ..-.....|.|-+..++|+|-|+|.|.|.+|...
T Consensus 207 ~vg~wetcS~tCg~~-G~q~r~V~c~qv~anr~~vv~~~nq~~e~-p~vtstcql~ic~ewq~~a~w~tCs~rcg~g~~~ 284 (560)
T KOG4597|consen 207 FVGDWETCSSTCGVQ-GRQYRVVTCEQVFANRENVVMRPNQTVEN-PVVTSTCQLVICNEWQADAGWYTCSARCGAGFLR 284 (560)
T ss_pred hcccchhhccccccc-CCcCceeeeehhhccccceeecCccccCC-cceeeeeeEEEcchhhcCCCceeeccccccceee
Confidence 466788888888764 77888888875 22211 11111000 0001245689999999999999999999999988
Q ss_pred eEEEEEE
Q psy15667 279 YSSKLQV 285 (286)
Q Consensus 279 ~~~~L~V 285 (286)
..+.+.+
T Consensus 285 rdv~c~s 291 (560)
T KOG4597|consen 285 RDVPCSS 291 (560)
T ss_pred ccceeee
Confidence 8887765
No 380
>PF06328 Lep_receptor_Ig: Ig-like C2-type domain; InterPro: IPR010457 This entry represents a ligand-binding domain that displays similarity to C2-set immunoglobulin domains (antibody constant domain 2) []. The two cysteine residues form a disulphide bridge.; PDB: 3L5H_A 1P9M_A 1I1R_A 2D9Q_B.
Probab=95.30 E-value=0.16 Score=34.38 Aligned_cols=68 Identities=22% Similarity=0.431 Sum_probs=45.4
Q ss_pred ccccccccCCCcEEEEEEeecC-----CCCeeEEeeCCEEcCCCCeeEeceEEecccceeEEEEEcccccCCCeEEEEEE
Q psy15667 8 SFIEQTLQPGPAVSLKCIASGN-----PTPDIGWTLDGFELPTNNRFVIGQFVSGHGDVISHVNISHVTVEDGGEYACVA 82 (286)
Q Consensus 8 ~~~~~~~~~G~~~~l~C~~~g~-----p~p~v~W~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~I~~~~~~D~G~Y~C~a 82 (286)
.+...++..|++++..|..... .+..+.|..|+..++.+....+ ++ ..+.+++.+.....+-.|.|.-
T Consensus 9 ~p~~pvv~lGS~vtasC~l~~~c~~~~~a~~I~Wkln~~~iP~~qy~~i------n~-~~SsVT~~~~~~~~~~L~cC~l 81 (89)
T PF06328_consen 9 SPPSPVVSLGSNVTASCVLKQNCSHSVNASQIVWKLNGEKIPGSQYRVI------ND-TVSSVTLPNLNPTGATLFCCKL 81 (89)
T ss_dssp ECSSSEEETTS-EEEEEEE-CCCHCT-STTCEEEECSSCESTCGCEEEE------ST-TEEEEEESS--SSEEEEEEEEE
T ss_pred ecCCCEEeCCCCEEEEEEEECCCCCCcccceEEEEECCEECChhHccee------CC-eEEEEEEccCCCCCceEEEEEE
Confidence 4566788999999999987743 5668999999987775433222 22 2356888888877777888863
No 381
>PF08204 V-set_CD47: CD47 immunoglobulin-like domain; InterPro: IPR013270 This family represents the CD47 leukocyte antigen V-set like Ig domain [, ].; PDB: 2VSC_B 2JJS_D 2JJT_C.
Probab=95.20 E-value=0.038 Score=40.05 Aligned_cols=70 Identities=16% Similarity=0.345 Sum_probs=38.7
Q ss_pred cCCCcEEEEEEeecC-----CCCeeEEeeCCEEcC----CCCee--------EeceEEecccceeEEEEEcccccCCCeE
Q psy15667 15 QPGPAVSLKCIASGN-----PTPDIGWTLDGFELP----TNNRF--------VIGQFVSGHGDVISHVNISHVTVEDGGE 77 (286)
Q Consensus 15 ~~G~~~~l~C~~~g~-----p~p~v~W~~~~~~l~----~~~~~--------~~~~~~~~~~~~~~~l~I~~~~~~D~G~ 77 (286)
.-.++|.|.|.+... +.-.|.|.++|..+- ...+. .++++. .| ..+|.+...+.- .|.
T Consensus 25 ~CN~tV~IPC~v~n~~~~ni~~m~VkWk~~~~~If~~dg~~~~~~~~~f~sa~i~~l~--kG--~aSL~~~~~~a~-~Gn 99 (130)
T PF08204_consen 25 VCNDTVVIPCFVNNLEANNISEMYVKWKFKNKDIFIFDGTNNKSTSDNFPSAKISELL--KG--NASLKMDKSDAV-EGN 99 (130)
T ss_dssp TT-SEEEE--BBSS---SSGGGEEEEEEETTEEEEEEETTTTEEEEGGGTT-BEGGGG--GT--B--EEEEHHHHH--EE
T ss_pred ecCCCEEEEeEeccccccccceEEEEEEECCeEEEEEcCccceecccCccccchhHhh--CC--CEEEEEcchhcc-ccc
Confidence 468999999988752 234689999988762 11111 111111 12 134777775555 799
Q ss_pred EEEEEEcCCEEE
Q psy15667 78 YACVAENRAGTC 89 (286)
Q Consensus 78 Y~C~a~n~~g~~ 89 (286)
|+|++.....+.
T Consensus 100 YTCeVt~~~~eg 111 (130)
T PF08204_consen 100 YTCEVTELSREG 111 (130)
T ss_dssp EEEEEEETTEEE
T ss_pred eEEEEEecCCCc
Confidence 999998765543
No 382
>PHA03286 envelope glycoprotein E; Provisional
Probab=94.76 E-value=0.6 Score=40.83 Aligned_cols=38 Identities=16% Similarity=0.212 Sum_probs=31.6
Q ss_pred cceEEEccCCCCCCeeEEEEEEcCCcceeeeeeEEEEc
Q psy15667 116 STSLVINPVGREDRGIYQCIARRSDGDVAQGSAELQLG 153 (286)
Q Consensus 116 ~~~l~i~~v~~~d~G~Y~C~a~~~~g~~~~~~~~l~v~ 153 (286)
...|.|.+.+.+++|.|+-...|..|......+.+.|.
T Consensus 126 ~~~L~I~nAt~qnaGiYtly~rnd~~~~~~~vflVtV~ 163 (492)
T PHA03286 126 GKELTILNASSQNAGIYIRYSRNGTRTAVMDVLVVWVS 163 (492)
T ss_pred CCceEEeeccccccceEEEEEcCCCCcEEEEEEEEEEe
Confidence 46799999999999999999998877765556677774
No 383
>cd04986 IgC_CH2 CH2 domain (second constant Ig domain of the heavy chain) in immunoglobulin. IgC_CH2: The second immunoglobulin constant domain (IgC), of immunoglobulin (Ig) heavy chains. This domain is found on the Fc fragment. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. There are two types of light chains: kappa and lambda; each composed of a constant domain and a variable domain. There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are modular proteins, in which the variable and constant domains have clear, conserved sequence patterns.
Probab=94.74 E-value=0.12 Score=35.81 Aligned_cols=70 Identities=19% Similarity=0.269 Sum_probs=36.8
Q ss_pred CCCCCeEEEEEeeecCC-C-CCeEEEEeCCeeCCCCCCceeeecC---CCeeeEEEcccCCCCCeEEEEEEEeccc
Q psy15667 205 LPEGARTRVICGVTHGD-P-PLTIRWLKDGKPLSPRFPVNVSDLD---SFSSLLSINSVSAAHSGEYTCVASNTAA 275 (286)
Q Consensus 205 ~~~g~~~~l~c~~~~~~-p-~~~~~W~~~g~~~~~~~~~~~~~~~---~~~~~L~i~~v~~~d~G~Y~C~a~N~~g 275 (286)
+..+..+.|.|.+..-. | ...+.|.++|.. ...........+ ...+.|.|..-.-.-.-.|+|.+.....
T Consensus 16 l~~~~~atLtClV~~f~~P~~i~V~W~~~g~~-~~~~t~~~~~~dgTys~~S~L~v~~~~W~~g~~ytC~V~H~~l 90 (99)
T cd04986 16 LLLGSSASLTCTLSGLRDPEGAVFTWTPSGGK-EAVQTSAESDQCGCYSVSSVLPGCAEEWNKGEPFACTVTHPEG 90 (99)
T ss_pred hCcCCccEEEEEEeccCCCCCeEEEEEECCcc-CcEEcCcccCCCCCEEEEEEEEeCHHHhcCCCeEEEEEECCCc
Confidence 33566778888776533 3 367889999874 110000000001 1133455443222334569999987643
No 384
>PHA02865 MHC-like TNF binding protein; Provisional
Probab=94.66 E-value=0.19 Score=42.58 Aligned_cols=21 Identities=14% Similarity=0.281 Sum_probs=17.2
Q ss_pred cEEEEEEeecCCCC--eeEEeeC
Q psy15667 19 AVSLKCIASGNPTP--DIGWTLD 39 (286)
Q Consensus 19 ~~~l~C~~~g~p~p--~v~W~~~ 39 (286)
.++|+|.+.|.-+. .++|.||
T Consensus 216 ~~tL~C~A~GFYP~~I~v~W~kd 238 (338)
T PHA02865 216 NTTLFCTFDSHYPSSVAAKWYNS 238 (338)
T ss_pred CceEEEEEEeEeCCccEEEEEec
Confidence 68999999996444 6779999
No 385
>PHA03283 envelope glycoprotein E; Provisional
Probab=94.31 E-value=0.82 Score=40.86 Aligned_cols=149 Identities=13% Similarity=0.127 Sum_probs=80.2
Q ss_pred cceEEEccCCCCCCeeEEEEEEcCCcceeeeeeEEEEcCCCce---------ecCCc-------------eEEecCCCEE
Q psy15667 116 STSLVINPVGREDRGIYQCIARRSDGDVAQGSAELQLGGLPYV---------RLIPK-------------VTAIDGEGLS 173 (286)
Q Consensus 116 ~~~l~i~~v~~~d~G~Y~C~a~~~~g~~~~~~~~l~v~~~~~~---------~~~~~-------------~~~~~g~~~~ 173 (286)
...|.|.+++.+++|.|+-..++..+ .....+.|.|...+.. ...+. .....|+++.
T Consensus 133 ~~~l~I~~at~~~aGVYtly~r~d~~-~~~~vflvtVk~~~~~~~~~Pp~~~pv~P~~h~a~f~v~nYhS~vf~~GDtf~ 211 (542)
T PHA03283 133 RSVLQIQRATPNIAGVYTLHVSSDGM-MKHSVFFVTVKKPPKQPQTPPAPLVPQVPARHHTDFHVRGYHSRVYSPGDSFD 211 (542)
T ss_pred CCeeEEEecccccCeEEEEEecCCCc-eEEEEEEEEecCCCcCCCCCCCCccccCCccCCceEEEecceeEEecCCCcee
Confidence 46799999999999999999998766 4444566777552110 11110 1124688887
Q ss_pred EEeeEeee---c--CCeEEEEEcCCccc-----------------c--------c--ccccCCCCCCCeEEEEEeeecCC
Q psy15667 174 IKCPVAGY---P--IEEVHWEKVPPKIE-----------------S--------F--AFPFDGLPEGARTRVICGVTHGD 221 (286)
Q Consensus 174 l~c~~~~~---p--~~~v~w~~~~~~~~-----------------~--------~--~~~~~~~~~g~~~~l~c~~~~~~ 221 (286)
+.-..... + ...+.|...+.... . + ..+......+.+....|....+
T Consensus 212 lsi~l~s~~~d~~fs~~i~Wyy~p~~~~C~~mrIYEtCIfHP~aPeCL~P~da~CsFaSp~ra~~l~~R~Y~~Cs~~~~- 290 (542)
T PHA03283 212 LSVHLESDIGDPSFSATIDWYYMNTSSSCDLFRVYETCIFHPTAMACLHPEDPACSFTSPARATKILHRVYGNCSPRGD- 290 (542)
T ss_pred EeEEEeeccCCCCceEEEEEEEecCCCCCceEEeeeecccCCCchhhcCcCCCCceeecchhHHHHHHHhhcCCCCccC-
Confidence 75544321 1 23577887432111 0 0 0111123344555555643211
Q ss_pred CCCeEEEEeCCeeCCCCCCceeeecCCCeeeEEEcccCCCCCeEEEEEEE
Q psy15667 222 PPLTIRWLKDGKPLSPRFPVNVSDLDSFSSLLSINSVSAAHSGEYTCVAS 271 (286)
Q Consensus 222 p~~~~~W~~~g~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~ 271 (286)
.|.+...................+..|.+.++..+++|.|.|+..
T Consensus 291 -----~wp~~C~~~~~~~~~~~l~~~~~~v~L~f~nap~~~SGLYVfVv~ 335 (542)
T PHA03283 291 -----RWPSRCHSTLLGNRPHFIQPAQNRVDLLFKNAPASASGLYVFVLL 335 (542)
T ss_pred -----CCCcCCcchhccCCcccceecCCCcceEeccCCcccCceEEEEEE
Confidence 233333211111111111112234568899999999999999875
No 386
>PHA03273 envelope glycoprotein C; Provisional
Probab=94.04 E-value=1.8 Score=38.16 Aligned_cols=63 Identities=24% Similarity=0.338 Sum_probs=34.5
Q ss_pred ceEEEccCCCCCCeeEEEEEEcCCcce-eeeeeEEEEcCCCceecCCceEEecCCCEEEEeeEee
Q psy15667 117 TSLVINPVGREDRGIYQCIARRSDGDV-AQGSAELQLGGLPYVRLIPKVTAIDGEGLSIKCPVAG 180 (286)
Q Consensus 117 ~~l~i~~v~~~d~G~Y~C~a~~~~g~~-~~~~~~l~v~~~~~~~~~~~~~~~~g~~~~l~c~~~~ 180 (286)
-.|.|..++..++|.|+=...+..+.. ......+.++..|.+.+.+ -.++.|++..-.|.+..
T Consensus 198 ~~LtI~sltaaTeGvYtWr~~~~n~t~~~~~~VtV~~yr~Psvsv~~-~PvL~Ge~y~A~C~aa~ 261 (486)
T PHA03273 198 FPLTIKSVDWRTAGVYVWSLYAKNGTLVNSTSVTVSTYNAPLVDLSV-HPSLKGENYRAVCVVAS 261 (486)
T ss_pred cceEEEecchhhceEEEEEEecCCCceeeeeEEEEEEecCCcccccC-CccccCCCceEEEEeee
Confidence 459999999999999985554543332 1122333334444433222 12334555555555544
No 387
>PHA03042 CD47-like protein; Provisional
Probab=93.89 E-value=0.33 Score=39.54 Aligned_cols=59 Identities=17% Similarity=0.294 Sum_probs=37.7
Q ss_pred CCCcEEEEEEeecC-----CCCeeEEeeCCEEcCCCCeeEeceEEecccceeEEEEEcccccCCCeEEEEEEEcCC
Q psy15667 16 PGPAVSLKCIASGN-----PTPDIGWTLDGFELPTNNRFVIGQFVSGHGDVISHVNISHVTVEDGGEYACVAENRA 86 (286)
Q Consensus 16 ~G~~~~l~C~~~g~-----p~p~v~W~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~I~~~~~~D~G~Y~C~a~n~~ 86 (286)
-.+++.+.|.+... -.-.|.|..||..+-..+. ....+|...... .=.|.|+|+|.+..
T Consensus 30 CN~TV~IpC~v~n~~~~ni~~~~V~Wkf~~~~If~~n~-----------tn~aSL~~~f~~-~l~GNYTCEv~~l~ 93 (286)
T PHA03042 30 CNKTIVIVCNLNLLIYYNISNIHINWKFNNKVIFKKNN-----------TNTSSLKFNFSK-NLSGNYTCEAINKF 93 (286)
T ss_pred cCceEEEEeecCChhhcCccceEEEEEeCCeeEEEecC-----------CcceEEEEeccc-cCCCceeEEEeecc
Confidence 57899999988742 3457999999987643211 111234443332 22699999998754
No 388
>KOG4597|consensus
Probab=93.64 E-value=0.084 Score=46.18 Aligned_cols=78 Identities=17% Similarity=0.084 Sum_probs=54.6
Q ss_pred eccccccccCCCcEEEEEEeecCCCCeeEEee---CCEEc--CCCCeeEeceEEecccceeEEEEEcccccCCCeEEEEE
Q psy15667 7 YSFIEQTLQPGPAVSLKCIASGNPTPDIGWTL---DGFEL--PTNNRFVIGQFVSGHGDVISHVNISHVTVEDGGEYACV 81 (286)
Q Consensus 7 ~~~~~~~~~~G~~~~l~C~~~g~p~p~v~W~~---~~~~l--~~~~~~~~~~~~~~~~~~~~~l~I~~~~~~D~G~Y~C~ 81 (286)
--+-.+-+..|++..++|-+.|.|.+.|+|-+ |+..+ ..+..+ +.. .-..+-.|.|-+....|+|-|+|.
T Consensus 201 ~cpa~w~vg~wetcS~tCg~~G~q~r~V~c~qv~anr~~vv~~~nq~~--e~p---~vtstcql~ic~ewq~~a~w~tCs 275 (560)
T KOG4597|consen 201 DCPAEWFVGDWETCSSTCGVQGRQYRVVTCEQVFANRENVVMRPNQTV--ENP---VVTSTCQLVICNEWQADAGWYTCS 275 (560)
T ss_pred cCcchhhcccchhhcccccccCCcCceeeeehhhccccceeecCcccc--CCc---ceeeeeeEEEcchhhcCCCceeec
Confidence 34556678899999999999999999999975 33222 211111 000 011123488999999999999999
Q ss_pred EEcCCEEE
Q psy15667 82 AENRAGTC 89 (286)
Q Consensus 82 a~n~~g~~ 89 (286)
|.+..|..
T Consensus 276 ~rcg~g~~ 283 (560)
T KOG4597|consen 276 ARCGAGFL 283 (560)
T ss_pred ccccccee
Confidence 99988853
No 389
>PHA03273 envelope glycoprotein C; Provisional
Probab=93.62 E-value=4 Score=36.10 Aligned_cols=71 Identities=17% Similarity=0.190 Sum_probs=40.9
Q ss_pred cccCCCcEEEEEEeecCCCC---eeEEeeCCEEcCCCCeeEeceEEeccc--ceeEEEEEcccccCC-CeEEEEEEE
Q psy15667 13 TLQPGPAVSLKCIASGNPTP---DIGWTLDGFELPTNNRFVIGQFVSGHG--DVISHVNISHVTVED-GGEYACVAE 83 (286)
Q Consensus 13 ~~~~G~~~~l~C~~~g~p~p---~v~W~~~~~~l~~~~~~~~~~~~~~~~--~~~~~l~I~~~~~~D-~G~Y~C~a~ 83 (286)
-+.+|+...=.|.+...-+| .+.|++||.++...............+ ...+.|++.+....+ .=..+|.+.
T Consensus 246 PvL~Ge~y~A~C~aa~YYPp~Sv~~rWf~dg~~V~~~~~~~~~~~~~~~gl~T~vStlt~~~~~~~~~PP~lrC~v~ 322 (486)
T PHA03273 246 PSLKGENYRAVCVVASYFPHSSVKLRWYKNAKEVDFTKYVTNASSVWVDGLITRISTLSIPVDPDEEYTPSLRCSIE 322 (486)
T ss_pred ccccCCCceEEEEeeeecCCCceEEEEEeCCeeccccccceeeEEEecCCceEEEEEEeccCcccCCCCCCceEEEE
Confidence 45789999999998875333 688999999886211111111111112 223445566543322 347799984
No 390
>PF07354 Sp38: Zona-pellucida-binding protein (Sp38); InterPro: IPR010857 This family contains a number of zona-pellucida-binding proteins that seem to be restricted to mammals. These are sperm proteins that bind to the 90 kDa family of zona pellucida glycoproteins in a calcium-dependent manner []. These represent some of the specific molecules that mediate the first steps of gamete interaction, allowing fertilisation to occur [].; GO: 0007339 binding of sperm to zona pellucida, 0005576 extracellular region
Probab=93.22 E-value=0.16 Score=41.26 Aligned_cols=47 Identities=23% Similarity=0.370 Sum_probs=34.1
Q ss_pred CCCeeEEeeC-CEEcCCCCeeEeceEEecccceeEEEEEcccccCCCeEEEEEEEc
Q psy15667 30 PTPDIGWTLD-GFELPTNNRFVIGQFVSGHGDVISHVNISHVTVEDGGEYACVAEN 84 (286)
Q Consensus 30 p~p~v~W~~~-~~~l~~~~~~~~~~~~~~~~~~~~~l~I~~~~~~D~G~Y~C~a~n 84 (286)
..|.+.|.-. |+.|..+.++.+ ...| .|.+.+...+++|.|+|...-
T Consensus 11 iDP~y~W~GP~g~~l~gn~~~nI----T~TG----~L~~~~F~esmSG~YTCtLsY 58 (271)
T PF07354_consen 11 IDPTYLWTGPNGKPLSGNSYVNI----TETG----KLMFKNFQESMSGSYTCTLSY 58 (271)
T ss_pred CCCceEEECCCCcccCCCCeEEE----ccCc----eEEeeccccccCCceEEEEEE
Confidence 4578999975 455655555544 2233 388999999999999999754
No 391
>cd04985 IgC_CH1 CH1 domain (first constant Ig domain of the heavy chain) in immunoglobulin. IgC_CH1: The first immunoglobulin constant domain (IgC), of immunoglobulin (Ig) heavy chains. This domain is found on the Fab antigen-binding fragment. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. There are two types of light chains: kappa and lambda; each composed of a constant domain and a variable domain. There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are modular proteins, in which the variable and constant domains have clear, conserved sequence patterns.
Probab=93.06 E-value=0.49 Score=32.49 Aligned_cols=64 Identities=17% Similarity=0.263 Sum_probs=31.1
Q ss_pred eEEEEEeeecCCC-CCeEEEEeCCeeCCCCC---CceeeecCC--CeeeEEEcccCCCCCeEEEEEEEecc
Q psy15667 210 RTRVICGVTHGDP-PLTIRWLKDGKPLSPRF---PVNVSDLDS--FSSLLSINSVSAAHSGEYTCVASNTA 274 (286)
Q Consensus 210 ~~~l~c~~~~~~p-~~~~~W~~~g~~~~~~~---~~~~~~~~~--~~~~L~i~~v~~~d~G~Y~C~a~N~~ 274 (286)
.+.|.|.+..-.| ...++|+|||+. .... .......+. ....|.+..-.-...-.|+|.+.-..
T Consensus 18 ~~~L~C~a~gFyP~~i~vtW~k~g~~-~~~~~~~~~~~~~dgty~~~s~L~v~~~~w~~~~~ytC~V~H~~ 87 (95)
T cd04985 18 SVTLGCLATGFLPEPVTFTWNSGSNS-TSGVKTYPAVLQSGGLYTASSQLTVPASEWKGKESFYCKVEHPS 87 (95)
T ss_pred cEEEEEEEeeEECCCcEEEEeECCEE-CCCcEECCCEeCCCCCEEEEEEEEEeHHHcCCCCcEEEEEEeCC
Confidence 3455555443222 367889999986 3221 001110111 12334444332223677999998654
No 392
>PHA03271 envelope glycoprotein C; Provisional
Probab=93.06 E-value=5.7 Score=34.73 Aligned_cols=22 Identities=23% Similarity=0.333 Sum_probs=17.3
Q ss_pred EEEEEcccccCCCeEEEEEEEc
Q psy15667 63 SHVNISHVTVEDGGEYACVAEN 84 (286)
Q Consensus 63 ~~l~I~~~~~~D~G~Y~C~a~n 84 (286)
..|.|.++...|+|.|+-...+
T Consensus 207 m~v~I~svD~~t~Gy~~v~~~d 228 (490)
T PHA03271 207 MGVEIRNVDYADNGYIQVIMRD 228 (490)
T ss_pred eeEEEEEeecccceEEEEEecC
Confidence 4589999999999977555543
No 393
>PHA02982 hypothetical protein; Provisional
Probab=92.87 E-value=0.28 Score=38.33 Aligned_cols=28 Identities=21% Similarity=0.380 Sum_probs=24.3
Q ss_pred CCeeeEEEcccCCCCCeEEEEEEEeccc
Q psy15667 248 SFSSLLSINSVSAAHSGEYTCVASNTAA 275 (286)
Q Consensus 248 ~~~~~L~i~~v~~~d~G~Y~C~a~N~~g 275 (286)
...++|+|.++..+..|=|+|+|....+
T Consensus 97 g~~STLTIkk~~i~N~GCYtc~~ks~~~ 124 (251)
T PHA02982 97 GNSSTFTMKKPDPQNLGCFTCEAKDAEG 124 (251)
T ss_pred ccceeEEeccCCcccCCceEEEEecCCC
Confidence 4477999999999999999999987554
No 394
>PHA03269 envelope glycoprotein C; Provisional
Probab=92.76 E-value=5.5 Score=35.52 Aligned_cols=33 Identities=15% Similarity=0.204 Sum_probs=26.4
Q ss_pred cccCCCcEEEEEEeecCCCC---eeEEeeCCEEcCC
Q psy15667 13 TLQPGPAVSLKCIASGNPTP---DIGWTLDGFELPT 45 (286)
Q Consensus 13 ~~~~G~~~~l~C~~~g~p~p---~v~W~~~~~~l~~ 45 (286)
-+.+|+...=.|.+...-+| .+.|++|+.++..
T Consensus 338 PVL~Ge~YkAtC~vA~YYPp~SvrlrWf~ng~~V~~ 373 (566)
T PHA03269 338 PVLLGNPYAAYCKVNKYYPPHSVIVKWTSNFGNIGK 373 (566)
T ss_pred ccccCCCceEEEEeeeecCCCceEEEEEeCCcccCc
Confidence 46789999999998875333 6889999998874
No 395
>PHA03270 envelope glycoprotein C; Provisional
Probab=92.56 E-value=6.8 Score=34.41 Aligned_cols=22 Identities=18% Similarity=0.235 Sum_probs=18.7
Q ss_pred EEEcccccCCCeEEEEEEEcCC
Q psy15667 65 VNISHVTVEDGGEYACVAENRA 86 (286)
Q Consensus 65 l~I~~~~~~D~G~Y~C~a~n~~ 86 (286)
|+|..++.+.+|.|+=...+..
T Consensus 184 L~I~slt~aTeGvY~Wr~~~~~ 205 (466)
T PHA03270 184 LVIQELTLATQGMYYWARGPAD 205 (466)
T ss_pred EEEEEcccccceEEEEEEecCC
Confidence 8999999999999998865533
No 396
>PF11465 Receptor_2B4: Natural killer cell receptor 2B4; InterPro: IPR024303 2B4 is a transmembrane receptor which is expressed primarily on natural killer (NK) cells. It plays a role in activating NK-mediated cytotoxicity through its interaction with CD48 on target cells in a subset of CD8 T cells []. The structure of 2B4 consists of an immunoglobulin variable domain fold and contains two beta-sheets. One of the beta-sheets, the six-stranded sheet, contains structural features that may have a role in ligand recognition and receptor function []. This entry represents the 2B4 immunoglobulin domain.; GO: 0005488 binding; PDB: 2PTU_D 2PTT_B 1Z2K_A.
Probab=92.19 E-value=0.38 Score=33.41 Aligned_cols=38 Identities=18% Similarity=0.367 Sum_probs=29.0
Q ss_pred CcceEEEccCCCCCCeeEEEEEEcCCcceeeeeeEEEE
Q psy15667 115 SSTSLVINPVGREDRGIYQCIARRSDGDVAQGSAELQL 152 (286)
Q Consensus 115 ~~~~l~i~~v~~~d~G~Y~C~a~~~~g~~~~~~~~l~v 152 (286)
...+|.|..+.++|+|.|.-+..+..|......+.+.|
T Consensus 69 enlaLlIkaAq~qDSG~Y~LEvT~~sG~V~~~~FqVsV 106 (108)
T PF11465_consen 69 ENLALLIKAAQPQDSGLYCLEVTNESGKVCTKNFQVSV 106 (108)
T ss_dssp TTTEEEESS-SGGG-EEEEEEEEETTSCEEEEEEEEEE
T ss_pred cCceEEEeecCcccCceEEEEEEcCCCcEEEEEEEEEe
Confidence 45689999999999999999999999987555555443
No 397
>PF05790 C2-set: Immunoglobulin C2-set domain; InterPro: IPR008424 The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulphide bonds. There are two types of light chains: kappa and lambda, each composed of a constant domain (CL) and a variable domain (VL). There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are highly modular proteins, in which the variable and constant domains have clear, conserved sequence patterns. The domains in Ig and Ig-like molecules are grouped into four types: V-set (variable; IPR013106 from INTERPRO), C1-set (constant-1; IPR003597 from INTERPRO), C2-set (constant-2; IPR008424 from INTERPRO) and I-set (intermediate; IPR013098 from INTERPRO) []. Structural studies have shown that these domains share a common core Greek-key beta-sandwich structure, with the types differing in the number of strands in the beta-sheets as well as in their sequence patterns [, ]. Immunoglobulin-like domains that are related in both sequence and structure can be found in several diverse protein families. Ig-like domains are involved in a variety of functions, including cell-cell recognition, cell-surface receptors, muscle structure and the immune system []. This entry represents C2-set domains, which are Ig-like domains resembling the antibody constant domain. C2-set domains are found primarily in the mammalian T-cell surface antigens CD2 (Cluster of Differentiation 2), CD4 and CD80, as well as in vascular (VCAM) and intercellular (ICAM) cell adhesion molecules. CD2 mediates T-cell adhesion via its ectodomain, and signal transduction utilising its 117-amino acid cytoplasmic tail []. CD2 displays structural and functional similarities with African swine fever virus (ASFV) LMW8-DR, a protein that is involved in cell-cell adhesion and immune response modulation, suggesting a possible role in the pathogenesis of ASFV infection []. CD4 is the primary receptor for HIV-1. CD4 has four immunoglobulin-like domains in its extracellular region that share the same structure, but can differ in sequence. Certain extracellular domains may be involved in dimerisation [].; GO: 0007155 cell adhesion, 0016021 integral to membrane; PDB: 1CID_A 1CDU_A 1WIQ_B 2NY4_B 2NY2_B 1WIP_B 1WIO_A 3S4S_G 1CDY_A 3S5L_G ....
Probab=92.14 E-value=0.81 Score=30.29 Aligned_cols=34 Identities=24% Similarity=0.403 Sum_probs=24.0
Q ss_pred eEEEcccCCCCCeEEEEEE-EecccceeeEEEEEE
Q psy15667 252 LLSINSVSAAHSGEYTCVA-SNTAAQARYSSKLQV 285 (286)
Q Consensus 252 ~L~i~~v~~~d~G~Y~C~a-~N~~g~~~~~~~L~V 285 (286)
.........+|+|.++|.| .|..-.......|.|
T Consensus 44 ~~~~~~~~~~d~G~w~C~a~~~~~k~~~s~~~i~v 78 (80)
T PF05790_consen 44 LVSTFTPTTEDSGTWVCTASDNEPKERESKIEILV 78 (80)
T ss_dssp EEEEESBTCGGSEEEEEEEEECTTEEEEEEEEEEE
T ss_pred EEEEecCCCCCCEEEEEEEcCCceEEEEEEEEEEc
Confidence 4556677889999999999 666555555555543
No 398
>PHA03042 CD47-like protein; Provisional
Probab=91.92 E-value=1.4 Score=35.99 Aligned_cols=68 Identities=25% Similarity=0.380 Sum_probs=40.8
Q ss_pred CeEEEEEeeec----CCCCCeEEEEeCCeeCCCCCCceeeecCCCeeeEEEcccCCCCCeEEEEEEEecccceeeEEEEE
Q psy15667 209 ARTRVICGVTH----GDPPLTIRWLKDGKPLSPRFPVNVSDLDSFSSLLSINSVSAAHSGEYTCVASNTAAQARYSSKLQ 284 (286)
Q Consensus 209 ~~~~l~c~~~~----~~p~~~~~W~~~g~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~N~~g~~~~~~~L~ 284 (286)
+.+.++|.+.. ....-.+.|..++..+...+.. ....|.+. -..+-.|+|||+|.+..-+.++...|.
T Consensus 32 ~TV~IpC~v~n~~~~ni~~~~V~Wkf~~~~If~~n~t-------n~aSL~~~-f~~~l~GNYTCEv~~l~n~gk~~IeLk 103 (286)
T PHA03042 32 KTIVIVCNLNLLIYYNISNIHINWKFNNKVIFKKNNT-------NTSSLKFN-FSKNLSGNYTCEAINKFNKIKNTIELQ 103 (286)
T ss_pred ceEEEEeecCChhhcCccceEEEEEeCCeeEEEecCC-------cceEEEEe-ccccCCCceeEEEeecccCccEEEEEE
Confidence 45566665532 1124568999999866432211 12345443 334449999999998766667776665
No 399
>PHA03281 envelope glycoprotein E; Provisional
Probab=90.42 E-value=3.9 Score=36.88 Aligned_cols=148 Identities=17% Similarity=0.170 Sum_probs=80.2
Q ss_pred cceEEEccCCCCCCeeEEEEEEcCCcceeeeeeEEEEcCCC--cee---cCCc-------------eEEecCCCEEEEee
Q psy15667 116 STSLVINPVGREDRGIYQCIARRSDGDVAQGSAELQLGGLP--YVR---LIPK-------------VTAIDGEGLSIKCP 177 (286)
Q Consensus 116 ~~~l~i~~v~~~d~G~Y~C~a~~~~g~~~~~~~~l~v~~~~--~~~---~~~~-------------~~~~~g~~~~l~c~ 177 (286)
.+.|.|.+++.+++|.|+-..+...|....+.+.++|...+ .+. ..++ .....|+++.+...
T Consensus 297 ~~vL~I~nAT~~naGVYtly~rg~~G~s~~svfLVtVkg~~~~rip~p~Vtpk~hga~F~vknYhShVF~pGDTFsl~v~ 376 (642)
T PHA03281 297 PGVLKFEHMEAHHAGVYIWNLQGSDGENMYATFLVKLKGDEENHIDLPAVTPKPKGAEFHMWHYHSHVFSVGDTFSLAMH 376 (642)
T ss_pred CCeeEEEecccccceeEEEEecCCCCcceeEEEEEEecCCcccCCCCCCccccccCceEEEeccceeEecCCCeeEEEEE
Confidence 46799999999999999988887667654546667775422 111 1110 11236888776655
Q ss_pred Eeee----c-CCeEEEEEcCCccc-------------------------ccc--cccCCCCCCCeEEEEEeeecCCCCCe
Q psy15667 178 VAGY----P-IEEVHWEKVPPKIE-------------------------SFA--FPFDGLPEGARTRVICGVTHGDPPLT 225 (286)
Q Consensus 178 ~~~~----p-~~~v~w~~~~~~~~-------------------------~~~--~~~~~~~~g~~~~l~c~~~~~~p~~~ 225 (286)
.... | ...+.|...+.... .|. .+......+.+....|... +.
T Consensus 377 L~s~ihD~pFsleI~Wyy~p~~p~C~~mrIYEtCIFHP~APeCL~Peda~CsFASP~ra~~Va~R~Y~nCs~~-~~---- 451 (642)
T PHA03281 377 LQYKIHDAPFDLLLEWLYVPIDPTCQPMRLYSACLYHENAPQCLSHENPECTFASPHIAQRVANTVYQNCEHA-DN---- 451 (642)
T ss_pred EeeeccCCCceeEEEEEEecCCCCCceEEeecccccCCCchhhcCcCCCCcccccchhHHHHHHHHhcCCCCC-CC----
Confidence 5432 1 23577887432111 011 1112234455555666432 12
Q ss_pred EEEEeCCeeCCCCC-CceeeecCCCeeeEEEcccCCCCCeEEEEEEE
Q psy15667 226 IRWLKDGKPLSPRF-PVNVSDLDSFSSLLSINSVSAAHSGEYTCVAS 271 (286)
Q Consensus 226 ~~W~~~g~~~~~~~-~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~ 271 (286)
|..+...+.... ...+.. ...+..|.+.++..+++|.|.|++.
T Consensus 452 --wp~~C~sis~m~p~~gL~~-~~n~vdL~F~nApasaSGLYVfVl~ 495 (642)
T PHA03281 452 --YTADCLAISHMEPGFGLEI-HDGGSALKFVDAAESLSGLYVFIIH 495 (642)
T ss_pred --CCCCCCcccccCccccccc-cCCCcceEeccCCcccCceEEEEEE
Confidence 332222111111 011111 1123458899999999999999875
No 400
>PHA03282 envelope glycoprotein E; Provisional
Probab=89.27 E-value=2.8 Score=37.07 Aligned_cols=23 Identities=26% Similarity=0.463 Sum_probs=20.1
Q ss_pred cceEEEccCCCCCCeeEEEEEEc
Q psy15667 116 STSLVINPVGREDRGIYQCIARR 138 (286)
Q Consensus 116 ~~~l~i~~v~~~d~G~Y~C~a~~ 138 (286)
+.+|.|.++..+|+|.|+-.+..
T Consensus 123 n~tl~l~~a~~~DsG~Y~L~~~~ 145 (540)
T PHA03282 123 NGTLVLREARETDSGMYVLSVSR 145 (540)
T ss_pred cceEEEeeccccCCceEEEEecC
Confidence 46799999999999999998754
No 401
>PF05790 C2-set: Immunoglobulin C2-set domain; InterPro: IPR008424 The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulphide bonds. There are two types of light chains: kappa and lambda, each composed of a constant domain (CL) and a variable domain (VL). There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are highly modular proteins, in which the variable and constant domains have clear, conserved sequence patterns. The domains in Ig and Ig-like molecules are grouped into four types: V-set (variable; IPR013106 from INTERPRO), C1-set (constant-1; IPR003597 from INTERPRO), C2-set (constant-2; IPR008424 from INTERPRO) and I-set (intermediate; IPR013098 from INTERPRO) []. Structural studies have shown that these domains share a common core Greek-key beta-sandwich structure, with the types differing in the number of strands in the beta-sheets as well as in their sequence patterns [, ]. Immunoglobulin-like domains that are related in both sequence and structure can be found in several diverse protein families. Ig-like domains are involved in a variety of functions, including cell-cell recognition, cell-surface receptors, muscle structure and the immune system []. This entry represents C2-set domains, which are Ig-like domains resembling the antibody constant domain. C2-set domains are found primarily in the mammalian T-cell surface antigens CD2 (Cluster of Differentiation 2), CD4 and CD80, as well as in vascular (VCAM) and intercellular (ICAM) cell adhesion molecules. CD2 mediates T-cell adhesion via its ectodomain, and signal transduction utilising its 117-amino acid cytoplasmic tail []. CD2 displays structural and functional similarities with African swine fever virus (ASFV) LMW8-DR, a protein that is involved in cell-cell adhesion and immune response modulation, suggesting a possible role in the pathogenesis of ASFV infection []. CD4 is the primary receptor for HIV-1. CD4 has four immunoglobulin-like domains in its extracellular region that share the same structure, but can differ in sequence. Certain extracellular domains may be involved in dimerisation [].; GO: 0007155 cell adhesion, 0016021 integral to membrane; PDB: 1CID_A 1CDU_A 1WIQ_B 2NY4_B 2NY2_B 1WIP_B 1WIO_A 3S4S_G 1CDY_A 3S5L_G ....
Probab=89.02 E-value=1.3 Score=29.28 Aligned_cols=22 Identities=36% Similarity=0.634 Sum_probs=17.9
Q ss_pred EEEcccccCCCeEEEEEE-EcCC
Q psy15667 65 VNISHVTVEDGGEYACVA-ENRA 86 (286)
Q Consensus 65 l~I~~~~~~D~G~Y~C~a-~n~~ 86 (286)
+.....+..|+|...|.| .+..
T Consensus 45 ~~~~~~~~~d~G~w~C~a~~~~~ 67 (80)
T PF05790_consen 45 VSTFTPTTEDSGTWVCTASDNEP 67 (80)
T ss_dssp EEEESBTCGGSEEEEEEEEECTT
T ss_pred EEEecCCCCCCEEEEEEEcCCce
Confidence 457888899999999999 5543
No 402
>PF06832 BiPBP_C: Penicillin-Binding Protein C-terminus Family; InterPro: IPR009647 This conserved region of approximately 90 residues is found in a sub-group of bacterial Penicillin-Binding Proteins (PBPs). A variable length loop region separates this region from the transpeptidase unit (IPR001460 from INTERPRO). It is predicted to be a beta fold.
Probab=87.23 E-value=6.5 Score=26.38 Aligned_cols=71 Identities=23% Similarity=0.230 Sum_probs=39.0
Q ss_pred CCeeEecccccccc--CC--CcEEEEEEeecCCCCeeEEeeCCEEcCCCCeeEeceEEecccceeEEEEEcccccCCCeE
Q psy15667 2 PPILTYSFIEQTLQ--PG--PAVSLKCIASGNPTPDIGWTLDGFELPTNNRFVIGQFVSGHGDVISHVNISHVTVEDGGE 77 (286)
Q Consensus 2 ~p~~~~~~~~~~~~--~G--~~~~l~C~~~g~p~p~v~W~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~I~~~~~~D~G~ 77 (286)
||+|.......++. ++ +...|...+.+. .+.+.|+.||..+....... .+.+ .....|.
T Consensus 10 ~l~I~~P~~g~~~~~~~~~~~~~~l~l~a~~~-~~~~~W~vdg~~~g~~~~~~-------------~~~~---~~~~~G~ 72 (89)
T PF06832_consen 10 PLRITSPPDGAVLALDPGIPERQPLVLKAAGG-RGPVYWFVDGEPLGTTQPGH-------------QLFW---QPDRPGE 72 (89)
T ss_pred CCEEEecCCCCEEEeCCCCCccceEEEEEeCC-CCcEEEEECCEEcccCCCCC-------------eEEe---CCCCCee
Confidence 55666544444432 22 245555666655 44899999999984322110 0111 2234678
Q ss_pred EEEEEEcCCEEE
Q psy15667 78 YACVAENRAGTC 89 (286)
Q Consensus 78 Y~C~a~n~~g~~ 89 (286)
|+-.+....|..
T Consensus 73 h~l~vvD~~G~~ 84 (89)
T PF06832_consen 73 HTLTVVDAQGRS 84 (89)
T ss_pred EEEEEEcCCCCE
Confidence 877776666543
No 403
>PHA03052 Hypothetical protein; Provisional
Probab=85.54 E-value=3.7 Score=25.92 Aligned_cols=33 Identities=21% Similarity=0.469 Sum_probs=26.0
Q ss_pred cccccCCCcEEEEEEee-cCC--CCeeEEeeCCEEc
Q psy15667 11 EQTLQPGPAVSLKCIAS-GNP--TPDIGWTLDGFEL 43 (286)
Q Consensus 11 ~~~~~~G~~~~l~C~~~-g~p--~p~v~W~~~~~~l 43 (286)
-..+..|.++++.|.+. |.| .+.|.|.-|+..+
T Consensus 6 ~i~~slGs~ltI~Ckv~lg~g~~~a~V~W~~N~~~~ 41 (69)
T PHA03052 6 GIVTSLGSNLTITCKVSLRPPTTDADVFWISNGMYY 41 (69)
T ss_pred cEEEEccCCceEeEEEEecCCCcceEEEEEeCCcEE
Confidence 34678899999999887 443 4578999998877
No 404
>KOG0613|consensus
Probab=83.85 E-value=1.6 Score=43.34 Aligned_cols=132 Identities=18% Similarity=0.101 Sum_probs=84.2
Q ss_pred CeeEeccccccccCCCcEEEEEEeecCCCCe-eEEeeCCEEcCCCCeeEeceEEecccceeEEEEEcccccCCCeEEEEE
Q psy15667 3 PILTYSFIEQTLQPGPAVSLKCIASGNPTPD-IGWTLDGFELPTNNRFVIGQFVSGHGDVISHVNISHVTVEDGGEYACV 81 (286)
Q Consensus 3 p~~~~~~~~~~~~~G~~~~l~C~~~g~p~p~-v~W~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~I~~~~~~D~G~Y~C~ 81 (286)
|++.....++....+..++|.|...+.+.|. +.|++++.....+..... ...+..+...+.|..+...+.+.|.|.
T Consensus 335 ~v~~~~~~~v~a~d~~~v~m~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~---~~~~~~ts~~~~~~~~~~~e~~~~~~~ 411 (1205)
T KOG0613|consen 335 PVGLVRNLSVTARDNTLVEMPTALSGTQKPDEAQGYHGEEVSSESLGALP---CPVGTVTSHTYTIKDAGPGEGYFTRVP 411 (1205)
T ss_pred cccccccceeccccCcceeecccccCCcCCchheeecccccccccccccc---cccccccCcchhhhhcCcccccccccc
Confidence 4455667777888999999999999999887 999987544322111100 011222234577899999999999999
Q ss_pred EEcCCEEEEEec-------------------------------------CCC---CCeeEEEeeCCccCcCCC------C
Q psy15667 82 AENRAGTCEITP-------------------------------------YDS---GPYLIAWFKDGRQIPGRT------S 115 (286)
Q Consensus 82 a~n~~g~~~~~~-------------------------------------~~~---~~~~~~W~~~g~~l~~~~------~ 115 (286)
|.|..|.-...+ ..+ .-..++|++++-....+. .
T Consensus 412 a~n~~g~~~~~~~~~vs~~~~gt~~~~~kk~~~~t~~L~~~~~i~~~~~~~s~~~~~~~~tt~~~~~~~s~~s~~l~r~~ 491 (1205)
T KOG0613|consen 412 AVNKGGTEQTIAESTVSEEMPGTQPPKFKKDVSTTDLLTVKDEITVRTPDSSTSMPMTTVTTIKDGLPLSDRSVTLTRDV 491 (1205)
T ss_pred eeccCCcccccchhhcccccCCCCCccccccccccccccCCcccccccCCCCccccceeEeeccCCcccccccccccccc
Confidence 999888532100 000 013456777766554332 2
Q ss_pred cceEEEccCCCCCCeeEEEEEE
Q psy15667 116 STSLVINPVGREDRGIYQCIAR 137 (286)
Q Consensus 116 ~~~l~i~~v~~~d~G~Y~C~a~ 137 (286)
...|++.-..+.|+|.|.-...
T Consensus 492 ~tslLlk~~~~~~~A~~~~a~~ 513 (1205)
T KOG0613|consen 492 LTSLLLKVASLSDGAQYTRALR 513 (1205)
T ss_pred hhhheeeccCCCccchhhhhhh
Confidence 3457777778888888854443
No 405
>PHA02865 MHC-like TNF binding protein; Provisional
Probab=69.97 E-value=31 Score=29.68 Aligned_cols=17 Identities=24% Similarity=0.415 Sum_probs=12.2
Q ss_pred ccCCCCCeEEEEEEEec
Q psy15667 257 SVSAAHSGEYTCVASNT 273 (286)
Q Consensus 257 ~v~~~d~G~Y~C~a~N~ 273 (286)
.+..+|...|+|...-+
T Consensus 287 ~v~~~~~~~Y~C~V~Hs 303 (338)
T PHA02865 287 RVPTDMSNQIVCVVFHS 303 (338)
T ss_pred EeCCCCCCCcEEEEEeC
Confidence 45566777899988654
No 406
>PF02124 Marek_A: Marek's disease glycoprotein A; InterPro: IPR001038 Equid herpesvirus 1 (Equine herpesvirus 1, EHV-1) glycoprotein 13 (EHV-1 gp13) has the characteristic features of a membrane-spanning protein: an N-terminal signal sequence; a hydrophobic membrane anchor region; a charged C-terminal cytoplasmic tail; and an exterior domain with nine potential N-glycosylation sites []. EHV-1 gp13 is the structural homologue of the gC-like glycoproteins of the Human herpesvirus 1 (HHV-1) and Human herpesvirus 2 (HHV-2) (gC-1 and gC-2 respectively), Pseudorabies virus (strain Indiana-Funkhauser/Becker) (PRV) (gIII) and Human herpesvirus 3 (HHV-3) (gp66). Secretory glycoprotein GP57-65 precursor (glycoprotein A - GA) is similar to Herpesvirus glycoprotein C, and belongs to the immunoglobulin gene superfamily [, ]. GA is thought to play an immunoevasive role in the pathogenesis of Marek's disease. It is a candidate for causing the early-stage immunosuppression that occurs after MDHV infection.
Probab=66.96 E-value=64 Score=25.76 Aligned_cols=15 Identities=27% Similarity=0.718 Sum_probs=12.1
Q ss_pred CeeEEEeeCCccCcC
Q psy15667 98 PYLIAWFKDGRQIPG 112 (286)
Q Consensus 98 ~~~~~W~~~g~~l~~ 112 (286)
+..++||.||.++..
T Consensus 6 S~~~~Wf~dg~~v~~ 20 (211)
T PF02124_consen 6 SVRFRWFEDGNPVEP 20 (211)
T ss_pred cEEEEEEECCEeCCc
Confidence 467899999998764
No 407
>PF06832 BiPBP_C: Penicillin-Binding Protein C-terminus Family; InterPro: IPR009647 This conserved region of approximately 90 residues is found in a sub-group of bacterial Penicillin-Binding Proteins (PBPs). A variable length loop region separates this region from the transpeptidase unit (IPR001460 from INTERPRO). It is predicted to be a beta fold.
Probab=66.58 E-value=30 Score=23.08 Aligned_cols=41 Identities=17% Similarity=0.301 Sum_probs=29.7
Q ss_pred eEEEeeCCccCcCCCCcceEEEccCCCCCCeeEEEEEEcCCcce
Q psy15667 100 LIAWFKDGRQIPGRTSSTSLVINPVGREDRGIYQCIARRSDGDV 143 (286)
Q Consensus 100 ~~~W~~~g~~l~~~~~~~~l~i~~v~~~d~G~Y~C~a~~~~g~~ 143 (286)
.+.||-||+.+........+.+ .+...|.|+-.+.+..|..
T Consensus 44 ~~~W~vdg~~~g~~~~~~~~~~---~~~~~G~h~l~vvD~~G~~ 84 (89)
T PF06832_consen 44 PVYWFVDGEPLGTTQPGHQLFW---QPDRPGEHTLTVVDAQGRS 84 (89)
T ss_pred cEEEEECCEEcccCCCCCeEEe---CCCCCeeEEEEEEcCCCCE
Confidence 6899999999944334444444 3357799999998888865
No 408
>PHA03240 envelope glycoprotein M; Provisional
Probab=66.06 E-value=13 Score=29.44 Aligned_cols=29 Identities=17% Similarity=0.114 Sum_probs=21.7
Q ss_pred ccccccCCCcEEEEEEeecCCCCeeEEee
Q psy15667 10 IEQTLQPGPAVSLKCIASGNPTPDIGWTL 38 (286)
Q Consensus 10 ~~~~~~~G~~~~l~C~~~g~p~p~v~W~~ 38 (286)
.+++..+|++|+|--.---.|-..+.|++
T Consensus 31 ievt~r~G~nVTLga~~~lhpgq~v~Wy~ 59 (258)
T PHA03240 31 EEHTTREGDPLLLGGGHGLGAGQKAHWYK 59 (258)
T ss_pred eecccccCCceeeCCcccCCCCCEEEEEe
Confidence 46778899999986643334667899998
No 409
>PHA02914 Immunoglobulin-like domain protein; Provisional
Probab=63.90 E-value=16 Score=31.87 Aligned_cols=69 Identities=23% Similarity=0.353 Sum_probs=46.7
Q ss_pred CCCCCeEEEEEeeec-CCCC-CeEEEEeCCeeCCC-----------------CCCceeeec-----CCCeeeEEEcccCC
Q psy15667 205 LPEGARTRVICGVTH-GDPP-LTIRWLKDGKPLSP-----------------RFPVNVSDL-----DSFSSLLSINSVSA 260 (286)
Q Consensus 205 ~~~g~~~~l~c~~~~-~~p~-~~~~W~~~g~~~~~-----------------~~~~~~~~~-----~~~~~~L~i~~v~~ 260 (286)
++.|.++.+.|-.+- |+.. ....|.-.|-++.+ ...+.+... +-.+++|+|.++..
T Consensus 276 ~~~g~~v~~~c~~s~~~~e~i~~~~w~~t~~~~~~~~g~~~~~~~v~~~~~~~~~~~i~~~~~~s~dlk~STLTIkka~I 355 (500)
T PHA02914 276 LEVGKRVDIECFFSMCGNENISNAKWIDTGFEIGPLIGTVKSKDIVEGDFAEDDDFMISAHANYSDDLKNSTLTIKKAHI 355 (500)
T ss_pred eccCcEEEEEEEEeecCCcccccceEEecCCcccceeEEEEecceeecccccCCceEEEEecccccchhhceEEeeeEEE
Confidence 556999999997653 3333 56789877654431 112223221 12467899999999
Q ss_pred CCCeEEEEEEEec
Q psy15667 261 AHSGEYTCVASNT 273 (286)
Q Consensus 261 ~d~G~Y~C~a~N~ 273 (286)
+..|=|+|+|...
T Consensus 356 ~N~GCY~~~a~~g 368 (500)
T PHA02914 356 NNAGCYEAQAFMG 368 (500)
T ss_pred EcCCceEEEEecC
Confidence 9999999999754
No 410
>PF02124 Marek_A: Marek's disease glycoprotein A; InterPro: IPR001038 Equid herpesvirus 1 (Equine herpesvirus 1, EHV-1) glycoprotein 13 (EHV-1 gp13) has the characteristic features of a membrane-spanning protein: an N-terminal signal sequence; a hydrophobic membrane anchor region; a charged C-terminal cytoplasmic tail; and an exterior domain with nine potential N-glycosylation sites []. EHV-1 gp13 is the structural homologue of the gC-like glycoproteins of the Human herpesvirus 1 (HHV-1) and Human herpesvirus 2 (HHV-2) (gC-1 and gC-2 respectively), Pseudorabies virus (strain Indiana-Funkhauser/Becker) (PRV) (gIII) and Human herpesvirus 3 (HHV-3) (gp66). Secretory glycoprotein GP57-65 precursor (glycoprotein A - GA) is similar to Herpesvirus glycoprotein C, and belongs to the immunoglobulin gene superfamily [, ]. GA is thought to play an immunoevasive role in the pathogenesis of Marek's disease. It is a candidate for causing the early-stage immunosuppression that occurs after MDHV infection.
Probab=62.46 E-value=48 Score=26.42 Aligned_cols=60 Identities=22% Similarity=0.380 Sum_probs=27.6
Q ss_pred EEeecCCC--CeeEEeeCCEEcCCCCeeEeceEEecccceeEEEEEcccccCCCe--EEEEEEEc
Q psy15667 24 CIASGNPT--PDIGWTLDGFELPTNNRFVIGQFVSGHGDVISHVNISHVTVEDGG--EYACVAEN 84 (286)
Q Consensus 24 C~~~g~p~--p~v~W~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~I~~~~~~D~G--~Y~C~a~n 84 (286)
|.+.=-|. -.+.|.-++..........+...-..+.+.........++..| | .|+|....
T Consensus 96 C~A~CVP~~~v~l~W~v~d~~~~~~~~~~~~g~C~~~pglvnirs~~pls~~~-~~~~YtC~l~G 159 (211)
T PF02124_consen 96 CTARCVPRGNVTLRWSVGDDPSPAPAATEITGVCAEHPGLVNIRSRRPLSDED-GPVEYTCRLIG 159 (211)
T ss_pred EEcceeeCCCeEEEEEECCccCCCCCceeecCcccCCcceeEeecccCCCccC-CceeEEEEEee
Confidence 65553332 4688998776543333322211111222222112222333333 4 99997765
No 411
>PHA03189 UL14 tegument protein; Provisional
Probab=61.69 E-value=46 Score=28.00 Aligned_cols=78 Identities=17% Similarity=0.254 Sum_probs=40.4
Q ss_pred cccccCCCcEEEEEEeecCCCCeeE-------Ee----------eCCEEcCCCCee--EeceEEecccceeEEEEE-ccc
Q psy15667 11 EQTLQPGPAVSLKCIASGNPTPDIG-------WT----------LDGFELPTNNRF--VIGQFVSGHGDVISHVNI-SHV 70 (286)
Q Consensus 11 ~~~~~~G~~~~l~C~~~g~p~p~v~-------W~----------~~~~~l~~~~~~--~~~~~~~~~~~~~~~l~I-~~~ 70 (286)
-+.+..|+.+++.|..-..--|.+. |. ..|+.+..+..+ ...+......+....|++ -++
T Consensus 61 P~l~pyGdrvtVpC~fp~H~WPevsIrarfCys~e~s~eLv~da~~G~~l~ndl~~~L~~~~W~Fedlg~aq~ltLtF~v 140 (348)
T PHA03189 61 PLLVPYGDRVTVPCTFPTHDWPEVSIRARFCYSPERSRELVVDADSGGELHNDLTYRLPEASWKFEDLGAAQRLTLTFRV 140 (348)
T ss_pred ccccCCCceeeeeeeecCCCCceeeEEEEEeeccccceEEEEEcccCCEeccccceecccceeeeecccceeEEEEEEEE
Confidence 4567889999999987655434322 21 112233211111 111111222222222333 356
Q ss_pred ccCCCeEEEEEEEcCCEE
Q psy15667 71 TVEDGGEYACVAENRAGT 88 (286)
Q Consensus 71 ~~~D~G~Y~C~a~n~~g~ 88 (286)
..+-+|+|.|...|....
T Consensus 141 ~t~taG~Y~CvLrN~tHg 158 (348)
T PHA03189 141 STSTAGMYECVLRNETHG 158 (348)
T ss_pred EecccceEEEEeccccce
Confidence 667789999999997643
No 412
>cd05890 Ig2_Nectin-1_like Second immunoglobulin (Ig) domain of nectin-1 (also known as poliovirus receptor related protein 1, or as CD111) and similar proteins. Ig2_Nectin-1_like: domain similar to the second immunoglobulin (Ig) domain of nectin-1 (also known as poliovirus receptor related protein 1, or as CD111). Nectin-1 belongs to the nectin family comprised of four transmembrane glycoproteins (nectins-1 through 4). Nectins are synaptic cell adhesion molecules (CAMs) which facilitate adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. Nectins also heterophilically trans-interact with other CAMs such as nectin-like molecules (necls); nectin-1 for example, has been shown to trans-interact with necl-1. Nectins also interact with various other proteins, including the actin filament (F-actin)-binding protein, afadin. Mutation in the human nectin-1 gene is associ
Probab=61.19 E-value=27 Score=23.93 Aligned_cols=67 Identities=21% Similarity=0.419 Sum_probs=37.4
Q ss_pred EEEEEeeecCCCCCeEEEEeC--CeeCCCCCCceeeecC------CCeeeEEEcccCCCCCeEEEEEEEecccceeeEEE
Q psy15667 211 TRVICGVTHGDPPLTIRWLKD--GKPLSPRFPVNVSDLD------SFSSLLSINSVSAAHSGEYTCVASNTAAQARYSSK 282 (286)
Q Consensus 211 ~~l~c~~~~~~p~~~~~W~~~--g~~~~~~~~~~~~~~~------~~~~~L~i~~v~~~d~G~Y~C~a~N~~g~~~~~~~ 282 (286)
....|.+..|.|+..|+|.-+ |.. ...... .....+.+-.....|.-.-+|...-..-+...++.
T Consensus 23 ~VA~CiSa~GrPpa~ItW~t~l~G~~-------etq~~~~~~GT~TV~S~y~lVPs~~~~gk~lTCvV~h~~~~~~~~~~ 95 (98)
T cd05890 23 LVATCVSANGKPPSVVRWDTRLKGEA-------EFQEIRNQNGTVTVISRYRLVPSREAHKQKLTCIVNYRNDRFTDSVT 95 (98)
T ss_pred EEEEEEcCCCcCCcEeEEEccCCCce-------eeeeeCCCCCCEEEEEEEEEeECHHHcCCEeEEEEEeccccccccEE
Confidence 445677777888888888732 211 111110 01233445556677888999988765444444444
Q ss_pred EE
Q psy15667 283 LQ 284 (286)
Q Consensus 283 L~ 284 (286)
|.
T Consensus 96 L~ 97 (98)
T cd05890 96 LN 97 (98)
T ss_pred ec
Confidence 43
No 413
>PF11049 KSHV_K1: Glycoprotein K1 of Kaposi's sarcoma-associated herpes virus; InterPro: IPR021022 This is a highly glycosylated cytoplasmic and membrane protein similar to the immunoglobulin receptor family that is expressed as an inducible early-lytic-cycle gene product in primary effusion lymphoma cell-lines. This domain would appear to be the cytoplasmic region of the protein [].
Probab=60.89 E-value=18 Score=22.74 Aligned_cols=52 Identities=15% Similarity=0.371 Sum_probs=32.5
Q ss_pred CeeEEEeeCCccCcCCCCcceEEEccCCCCCCeeEEEEEEcCCcceeeeeeEEEEcCCCce
Q psy15667 98 PYLIAWFKDGRQIPGRTSSTSLVINPVGREDRGIYQCIARRSDGDVAQGSAELQLGGLPYV 158 (286)
Q Consensus 98 ~~~~~W~~~g~~l~~~~~~~~l~i~~v~~~d~G~Y~C~a~~~~g~~~~~~~~l~v~~~~~~ 158 (286)
...+.||-||..|- +.....+.+.+ -.+.|+|+...++ ..++.++.+..|..
T Consensus 10 sLPiswYcN~TRLl-Rlt~~Tlt~~~----ltcNFtCV~qSGh----~hSiWItW~~qPVL 61 (71)
T PF11049_consen 10 SLPISWYCNGTRLL-RLTQQTLTVVT----LTCNFTCVGQSGH----RHSIWITWYAQPVL 61 (71)
T ss_pred CCcccEEECCceee-eecCCeEeeee----eeEEeeecCCCCC----CceEEEEEcCchhh
Confidence 34589999998763 22233455433 3478999887654 24677777666543
No 414
>cd05890 Ig2_Nectin-1_like Second immunoglobulin (Ig) domain of nectin-1 (also known as poliovirus receptor related protein 1, or as CD111) and similar proteins. Ig2_Nectin-1_like: domain similar to the second immunoglobulin (Ig) domain of nectin-1 (also known as poliovirus receptor related protein 1, or as CD111). Nectin-1 belongs to the nectin family comprised of four transmembrane glycoproteins (nectins-1 through 4). Nectins are synaptic cell adhesion molecules (CAMs) which facilitate adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. Nectins also heterophilically trans-interact with other CAMs such as nectin-like molecules (necls); nectin-1 for example, has been shown to trans-interact with necl-1. Nectins also interact with various other proteins, including the actin filament (F-actin)-binding protein, afadin. Mutation in the human nectin-1 gene is associ
Probab=60.31 E-value=43 Score=22.98 Aligned_cols=21 Identities=24% Similarity=0.697 Sum_probs=16.3
Q ss_pred CcEEEEEE-eecCCCCeeEEee
Q psy15667 18 PAVSLKCI-ASGNPTPDIGWTL 38 (286)
Q Consensus 18 ~~~~l~C~-~~g~p~p~v~W~~ 38 (286)
+.++=+|. +.|.|++.|+|.-
T Consensus 21 ~v~VA~CiSa~GrPpa~ItW~t 42 (98)
T cd05890 21 KMLVATCVSANGKPPSVVRWDT 42 (98)
T ss_pred eEEEEEEEcCCCcCCcEeEEEc
Confidence 34566897 6689999999984
No 415
>PHA03240 envelope glycoprotein M; Provisional
Probab=59.76 E-value=26 Score=27.72 Aligned_cols=92 Identities=24% Similarity=0.318 Sum_probs=49.9
Q ss_pred EEecCCCEEEEeeEeeecCCeEEEEEcCCcccccccccCCC-CCCCeEEEEEeeecCCCCCeEEEEeCCe--eCC---CC
Q psy15667 165 TAIDGEGLSIKCPVAGYPIEEVHWEKVPPKIESFAFPFDGL-PEGARTRVICGVTHGDPPLTIRWLKDGK--PLS---PR 238 (286)
Q Consensus 165 ~~~~g~~~~l~c~~~~~p~~~v~w~~~~~~~~~~~~~~~~~-~~g~~~~l~c~~~~~~p~~~~~W~~~g~--~~~---~~ 238 (286)
.+.+|++++|-..--.-|.-.+.|.+..= .++ -.|+...+.|.-.. | |+|+ .+. ..
T Consensus 34 t~r~G~nVTLga~~~lhpgq~v~Wy~~~c---------~~~~G~G~~~~plC~Ytp--p-------k~~r~ktl~~t~~n 95 (258)
T PHA03240 34 TTREGDPLLLGGGHGLGAGQKAHWYKHKC---------DGITGNGDKLHPICTYDP--P-------KNGKGKTLDESAEN 95 (258)
T ss_pred ccccCCceeeCCcccCCCCCEEEEEeeec---------ccccCCCCCCceeEEecC--C-------ccccccccccccCC
Confidence 44578888875433223555788887210 111 24666777776421 1 1111 121 12
Q ss_pred CCceeeecCCCeeeEEEcccCCCCCeEEEEEEEecccce
Q psy15667 239 FPVNVSDLDSFSSLLSINSVSAAHSGEYTCVASNTAAQA 277 (286)
Q Consensus 239 ~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~N~~g~~ 277 (286)
.+..+... +.+|.|-++..+|.|+|.=.-....|..
T Consensus 96 t~i~y~C~---NstL~i~~vn~sd~~nYcr~k~~~~g~~ 131 (258)
T PHA03240 96 SFILYECH---NSTLIIAHLNLSDAGEYCRKKCPPKGDC 131 (258)
T ss_pred CceEEEec---cceEEEEEEeecCcchhhhccCCCCCCc
Confidence 23334442 5689999999999999953333334543
No 416
>PF02440 Adeno_E3_CR1: Adenovirus E3 region protein CR1; InterPro: IPR003471 Early region 3 (E3) of human adenoviruses (Ads) codes for proteins that appear to control viral interactions with the host []. This region called CR1 (conserved region 1) [] is found three times in Human adenovirus 19 (a subgroup D virus) 49 Kd protein in the E3 region. CR1 is also found in the 20.1 Kd protein of subgroup B adenoviruses. The function of this 80 amino acid region is unknown. This region is probably a divergent immunoglobulin domain.
Probab=59.51 E-value=32 Score=21.54 Aligned_cols=21 Identities=29% Similarity=0.601 Sum_probs=14.9
Q ss_pred ccCCCcEEEEEEeecCCCCeeEEee
Q psy15667 14 LQPGPAVSLKCIASGNPTPDIGWTL 38 (286)
Q Consensus 14 ~~~G~~~~l~C~~~g~p~p~v~W~~ 38 (286)
|..|++++| .|.|...|+|++
T Consensus 2 v~~G~N~TL----~Gp~~~~V~Wy~ 22 (63)
T PF02440_consen 2 VTVGSNVTL----VGPPDGPVTWYK 22 (63)
T ss_pred EeEcCcEEE----eCCCCCceEEEE
Confidence 556888776 455666799983
No 417
>PF06328 Lep_receptor_Ig: Ig-like C2-type domain; InterPro: IPR010457 This entry represents a ligand-binding domain that displays similarity to C2-set immunoglobulin domains (antibody constant domain 2) []. The two cysteine residues form a disulphide bridge.; PDB: 3L5H_A 1P9M_A 1I1R_A 2D9Q_B.
Probab=58.46 E-value=43 Score=22.60 Aligned_cols=45 Identities=11% Similarity=0.245 Sum_probs=26.5
Q ss_pred CCCeEEEEeCCeeCCCCCCceeeecCCCeeeEEEcccCCCCCeEEEEE
Q psy15667 222 PPLTIRWLKDGKPLSPRFPVNVSDLDSFSSLLSINSVSAAHSGEYTCV 269 (286)
Q Consensus 222 p~~~~~W~~~g~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~ 269 (286)
....+.|.-++..++..+...+ .......++.+.....+-.|-|.
T Consensus 36 ~a~~I~Wkln~~~iP~~qy~~i---n~~~SsVT~~~~~~~~~~L~cC~ 80 (89)
T PF06328_consen 36 NASQIVWKLNGEKIPGSQYRVI---NDTVSSVTLPNLNPTGATLFCCK 80 (89)
T ss_dssp STTCEEEECSSCESTCGCEEEE---STTEEEEEESS--SSEEEEEEEE
T ss_pred ccceEEEEECCEECChhHccee---CCeEEEEEEccCCCCCceEEEEE
Confidence 4567899999987655432222 22345677777666666666665
No 418
>PHA03282 envelope glycoprotein E; Provisional
Probab=48.90 E-value=13 Score=33.16 Aligned_cols=25 Identities=16% Similarity=0.441 Sum_probs=20.8
Q ss_pred eEEEccCCCCCCeeEEEEEE-cCCcc
Q psy15667 118 SLVINPVGREDRGIYQCIAR-RSDGD 142 (286)
Q Consensus 118 ~l~i~~v~~~d~G~Y~C~a~-~~~g~ 142 (286)
.|+|.+...+++|.|.|... |.+-+
T Consensus 334 dL~F~nAp~saSGLYVfVl~yNGHVe 359 (540)
T PHA03282 334 NLQLRDASEASGGLYVCVVYVNGHVH 359 (540)
T ss_pred ceEecCCCcccCceEEEEEEECCeee
Confidence 69999999999999999996 44333
No 419
>KOG0200|consensus
Probab=48.36 E-value=1.4e+02 Score=28.23 Aligned_cols=29 Identities=28% Similarity=0.338 Sum_probs=22.9
Q ss_pred eeeEEEcccCCCCCeEEEEEEEeccccee
Q psy15667 250 SSLLSINSVSAAHSGEYTCVASNTAAQAR 278 (286)
Q Consensus 250 ~~~L~i~~v~~~d~G~Y~C~a~N~~g~~~ 278 (286)
...+.+.++...+.|.|.|...+..+...
T Consensus 116 ~~~~~~~n~~~~~~~~~~~~~~~~~~~~~ 144 (609)
T KOG0200|consen 116 FESGLIYNVSLTEAGEYLCWTGRTVGDGP 144 (609)
T ss_pred eEeeeeeccChhhcceeeccCCCcccccc
Confidence 45678999999999999999987444433
No 420
>PHA03283 envelope glycoprotein E; Provisional
Probab=45.82 E-value=40 Score=30.64 Aligned_cols=37 Identities=24% Similarity=0.237 Sum_probs=30.0
Q ss_pred eeeEEEcccCCCCCeEEEEEEEecccceeeEEEEEEC
Q psy15667 250 SSLLSINSVSAAHSGEYTCVASNTAAQARYSSKLQVK 286 (286)
Q Consensus 250 ~~~L~i~~v~~~d~G~Y~C~a~N~~g~~~~~~~L~V~ 286 (286)
.+.|.|.++..+++|.|+--.+|..+.....+.|+|+
T Consensus 133 ~~~l~I~~at~~~aGVYtly~r~d~~~~~~vflvtVk 169 (542)
T PHA03283 133 RSVLQIQRATPNIAGVYTLHVSSDGMMKHSVFFVTVK 169 (542)
T ss_pred CCeeEEEecccccCeEEEEEecCCCceEEEEEEEEec
Confidence 3568999999999999999999877766666666664
No 421
>PHA03189 UL14 tegument protein; Provisional
Probab=45.72 E-value=1.8e+02 Score=24.74 Aligned_cols=27 Identities=26% Similarity=0.386 Sum_probs=19.2
Q ss_pred ccCCCCCeEEEEEEEecc-cceeeEEEE
Q psy15667 257 SVSAAHSGEYTCVASNTA-AQARYSSKL 283 (286)
Q Consensus 257 ~v~~~d~G~Y~C~a~N~~-g~~~~~~~L 283 (286)
++..+-+|.|.|+..|.. |....++.+
T Consensus 139 ~v~t~taG~Y~CvLrN~tHglv~~rf~i 166 (348)
T PHA03189 139 RVSTSTAGMYECVLRNETHGLVLQRFVI 166 (348)
T ss_pred EEEecccceEEEEeccccceeeeEEeee
Confidence 456677999999999964 555444443
No 422
>PF01688 Herpes_gI: Alphaherpesvirus glycoprotein I; InterPro: IPR002874 This family consists of glycoprotein I from various members of the alphaherpesvirinae. These include Human herpesvirus 1 (HHV-1), Human herpesvirus 3 (HHV-3) and Suid herpesvirus 1 (Pseudorabies virus). Glycoprotein I (gI) is important during natural infection, mutants lacking gI produce smaller lesions at the site of infection and show reduced neuronal spread []. gI forms a heterodimeric complex with gE; this complex displays Fc receptor activity (binds to the Fc region of immunoglobulin) []. Glycoproteins are also important in the production of virus-neutralizing antibodies and cell mediated immunity []. The alphaherpesviridae have a dsDNA genome and have no RNA stage during viral replication.; GO: 0033643 host cell part
Probab=40.83 E-value=87 Score=23.83 Aligned_cols=28 Identities=25% Similarity=0.199 Sum_probs=21.7
Q ss_pred eeeEEEcccCCCCCeEEEEEEEecccce
Q psy15667 250 SSLLSINSVSAAHSGEYTCVASNTAAQA 277 (286)
Q Consensus 250 ~~~L~i~~v~~~d~G~Y~C~a~N~~g~~ 277 (286)
.-.|.|.+.+.+|+|.|.-...=.....
T Consensus 123 ~~lL~i~~p~~~dsG~Y~lRV~l~~~~~ 150 (161)
T PF01688_consen 123 GVLLRIRNPRPEDSGIYYLRVWLDGANK 150 (161)
T ss_pred ceEEEeCCCCcccceEEEEEEEECCCCC
Confidence 4579999999999999998776443333
No 423
>PF05955 Herpes_gp2: Equine herpesvirus glycoprotein gp2; InterPro: IPR010278 This entry consists of a number of glycoprotein Gp2 sequences mainly found from equine herpesviruses [].; GO: 0016032 viral reproduction, 0016021 integral to membrane
Probab=40.41 E-value=98 Score=23.89 Aligned_cols=76 Identities=18% Similarity=0.255 Sum_probs=43.8
Q ss_pred EEeec-CCCCeeEEeeCCEEcCCCCeeEe-ceEEecccc-eeEEEEEcccccCCCeEEEEEEEcCCEEEEEecCCCCCee
Q psy15667 24 CIASG-NPTPDIGWTLDGFELPTNNRFVI-GQFVSGHGD-VISHVNISHVTVEDGGEYACVAENRAGTCEITPYDSGPYL 100 (286)
Q Consensus 24 C~~~g-~p~p~v~W~~~~~~l~~~~~~~~-~~~~~~~~~-~~~~l~I~~~~~~D~G~Y~C~a~n~~g~~~~~~~~~~~~~ 100 (286)
|.+.. .-+|.++|.-....|..++.-.+ .....+..+ ..+.+.|+..+..|+-.|.|.+.... .....
T Consensus 114 CitseL~s~PtitWsVgs~rl~n~gftqtwy~iqPGvCgilrS~v~~~R~~G~~~~~y~c~~~~~D---------a~t~~ 184 (226)
T PF05955_consen 114 CITSELVSQPTITWSVGSDRLRNDGFTQTWYGIQPGVCGILRSEVRIPRAEGRDNVDYLCEIRALD---------AKTSD 184 (226)
T ss_pred EeeccccCCCeEEEEeccceeecCCccceeecccCcceeeEeeeeecccCCCCCcccEEecccccc---------cccce
Confidence 65543 35688999876666654433211 000111122 12336788888999999999776543 22345
Q ss_pred EEEeeCCc
Q psy15667 101 IAWFKDGR 108 (286)
Q Consensus 101 ~~W~~~g~ 108 (286)
+.|+++..
T Consensus 185 ~kv~~~a~ 192 (226)
T PF05955_consen 185 YKVLRNAY 192 (226)
T ss_pred eeeccCcc
Confidence 77877664
No 424
>smart00635 BID_2 Bacterial Ig-like domain 2.
Probab=29.81 E-value=1.5e+02 Score=19.22 Aligned_cols=38 Identities=16% Similarity=0.262 Sum_probs=27.8
Q ss_pred eeEeccccccccCCCcEEEEEEeecCC---CCeeEEeeCCE
Q psy15667 4 ILTYSFIEQTLQPGPAVSLKCIASGNP---TPDIGWTLDGF 41 (286)
Q Consensus 4 ~~~~~~~~~~~~~G~~~~l~C~~~g~p---~p~v~W~~~~~ 41 (286)
.+.+.+.+..+..|+...|.......- ...+.|.-.+.
T Consensus 4 ~i~i~p~~~~l~~G~~~~l~a~~~~~~~~~~~~v~w~Ssn~ 44 (81)
T smart00635 4 SVTVTPTTASVKKGLTLQLTATVTPSSAKVTGKVTWTSSNP 44 (81)
T ss_pred EEEEeCCeeEEeCCCeEEEEEEEECCCCCccceEEEEECCC
Confidence 356777788899999999999854322 35788986654
No 425
>PF02480 Herpes_gE: Alphaherpesvirus glycoprotein E; InterPro: IPR003404 Glycoprotein E (gE) of Alphaherpesvirus forms a complex with glycoprotein I (gI), functioning as an immunoglobulin G (IgG) Fc binding protein. gE is involved in virus spread but is not essential for propagation [].; GO: 0016020 membrane; PDB: 2GJ7_F 2GIY_B.
Probab=29.72 E-value=54 Score=29.50 Aligned_cols=20 Identities=15% Similarity=0.253 Sum_probs=15.1
Q ss_pred EEEcccccCCCeEEEEEEEc
Q psy15667 65 VNISHVTVEDGGEYACVAEN 84 (286)
Q Consensus 65 l~I~~~~~~D~G~Y~C~a~n 84 (286)
|.+.|+..+++|.|.|.+.-
T Consensus 271 l~f~~a~~~~sGLYv~V~~~ 290 (439)
T PF02480_consen 271 LQFTNAPESASGLYVFVVYY 290 (439)
T ss_dssp EEESS--GGG-EEEEEEEEE
T ss_pred eEecCCCcccCceEEEEEEE
Confidence 88999999999999998754
No 426
>PF00801 PKD: PKD domain; InterPro: IPR000601 The PKD (Polycystic Kidney Disease) domain was first identified in the Polycystic Kidney Disease protein, polycystin-1 (PDK1 gene), and contains an Ig-like fold consisting of a beta-sandwich of seven strands in two sheets with a Greek key topology, although some members have additional strands []. Polycystin-1 is a large cell-surface glycoprotein involved in adhesive protein-protein and protein-carbohydrate interactions; however it is not clear if the PKD domain mediates any of these interactions. PKD domains are also found in other proteins, usually in the extracellular parts of proteins involved in interactions with other proteins. For example, domains with a PKD-type fold are found in archaeal surface layer proteins that protect the cell from extreme environments [], and in the human VPS10 domain-containing receptor SorCS2 [].; PDB: 1B4R_A 2KZW_A 2C4X_A 2C26_A 2Y72_B 3JQU_A 3JS7_B 1WGO_A 1L0Q_A.
Probab=27.70 E-value=1.6e+02 Score=18.25 Aligned_cols=30 Identities=13% Similarity=0.338 Sum_probs=22.0
Q ss_pred cccccCCCcEEEEEEeecCCCCeeEEeeCC
Q psy15667 11 EQTLQPGPAVSLKCIASGNPTPDIGWTLDG 40 (286)
Q Consensus 11 ~~~~~~G~~~~l~C~~~g~p~p~v~W~~~~ 40 (286)
...+..|+.+.|...........+.|...+
T Consensus 5 ~~~~~~g~~v~f~~~~~~g~~~~y~W~fgd 34 (69)
T PF00801_consen 5 PTYVPTGQPVTFTASSSDGSPVTYSWDFGD 34 (69)
T ss_dssp CSCEBTTSEEEEEETTTTSSECEEEEE-SS
T ss_pred CCEEcCCCEEEEEEEccCCCCeEEEEEECC
Confidence 456788999999998843345678899877
No 427
>COG5475 Uncharacterized small protein [Function unknown]
Probab=27.10 E-value=1.3e+02 Score=18.20 Aligned_cols=22 Identities=18% Similarity=0.404 Sum_probs=15.4
Q ss_pred EEEccCCCCCCeeEEEEEEcCCcc
Q psy15667 119 LVINPVGREDRGIYQCIARRSDGD 142 (286)
Q Consensus 119 l~i~~v~~~d~G~Y~C~a~~~~g~ 142 (286)
.++.... ..|.|.|...+..|.
T Consensus 20 Mtvs~~s--s~Gmy~C~Wf~g~g~ 41 (60)
T COG5475 20 MTVSGYS--SDGMYECRWFDGYGV 41 (60)
T ss_pred EEEeccc--cCCeEEEEEecCCCc
Confidence 4444443 339999999998774
No 428
>PF03921 ICAM_N: Intercellular adhesion molecule (ICAM), N-terminal domain; InterPro: IPR013768 Intercellular adhesion molecules (ICAMs) and vascular cell adhesion molecule-1 (VCAM-1) are part of the immunoglobulin superfamily. They are important in inflammation, immune responses and in intracellular signalling events []. The ICAM family consists of five members, designated ICAM-1 to ICAM-5. They are known to bind to leucocyte integrins CD11/CD18 during inflammation and in immune responses. In addition, ICAMs may exist in soluble forms in human plasma, due to activation and proteolysis mechanisms at cell surfaces. ICAM-1 (CD54) contains five Ig-like domains. It is expressed on leucocytes, endothelial and epithelial cells, and is upregulated in response to bacterial invasion. The protein is a ligand for lymphocyte-function associated (LFA) antigens and also a receptor for CD11a,b/CD18, fibrinogen, human rhinovirus and Plasmodium falciparum-infected erythrocytes. ICAM-1 binding sites for CD11a/CD18 and its other binding partners are located in the first domain and are overlapping. ICAM-1 domain 2 seems to play an important role in maintaining the conformation of domain 1 and particularly the structural integrity of the LFA-1 ligand-binding site []. The 3-dimensional atomic structure of the tandem N-terminal Ig-like domains (D1 and D2) of ICAM-1 has been determined to 2.2A resolution and fitted into a cryoelectron microscopy reconstruction of a rhinovirus-ICAM-1 complex []. Extensive charge interactions between ICAM-1 and human rhinovirusesare largely conserved in major and minor receptor groups of rhinoviruses. The interaction of ICAMs with LFA-1 is mediated by a divalent cation bound to the insertion (I)-domain on the alpha chain of LFA-1 and the carboxyl group of a conserved glutamic acid residue on ICAMs. ICAM-2 (CD102) has two Ig-like domains. It is expressed on endothelial cells, leucocytes and platelets, and binds to CD11a'b/CD18. The protein is refractory to proinflammatory cytokines, and plays an important role in the adhesion of leucocytes to the uninduced endothelium []. ICAM-3 (CD50) contains five Ig-like domains and binds to leucocyte integrins CD11a'd/CD18. The protein plays an important role in the immune response and perhaps in signal transduction []. ICAM-4 (LW blood group Ag) is red blood cell (RBC) specific and binds to CD11a'b/CD18. It is associated with the RBC Rh antigens and could be important in retaining immature red cells in the bone marrow, or in the uptake of senescent cells into the spleen []. ICAM-5 (telencephalin) has nine Ig-like domains and is confined to the telencephalon of the brain. The role of this CD11a/CD18 binding molecule is not yet known []. VCAM-1 was first described as a cytokine-inducible endothelial adhesion molecule. It can bind to leucocyte integrin VL-4 (very late antigen-4) to recruit leucocytes to sites of inflammation []. The predominant form of VCAM-1 in vivo has an N-terminal extracellular region comprising seven Ig-like domains []. A conserved integrin-binding motif has been identified in domains 1 and 4, variants of which are present in the N-terminal domain of all members of the integrin-binding subgroup of the immunoglobulin superfamily. The structure of a VLA-4-binding fragment comprising the first two domains of VCAM-1 has been determined to 1.8A resolution. The integrin-binding motif is exposed and forms the N-terminal region of the loop between beta-strands C and D of domain 1 []. VCAM-1 domains 1 and 2 are structurally similar to ICAM-1 and ICAM-2 []. This entry represents the N-terminal domain of ICAM proteins such as ICAM-2, ICAM-3 and ICAM-4.; PDB: 3BN3_B 1T0P_B 1ZXQ_A 3TCX_A 1MQ8_A 1Z7Z_I 1IC1_A 1IAM_A.
Probab=26.62 E-value=2.1e+02 Score=19.42 Aligned_cols=65 Identities=28% Similarity=0.439 Sum_probs=37.6
Q ss_pred eEeccccccccCCCcEEEEEEeecCCCCe-eEEeeCCEEcCCCCeeEeceEEecccceeEEEEEcccccCCCeEEEEEEE
Q psy15667 5 LTYSFIEQTLQPGPAVSLKCIASGNPTPD-IGWTLDGFELPTNNRFVIGQFVSGHGDVISHVNISHVTVEDGGEYACVAE 83 (286)
Q Consensus 5 ~~~~~~~~~~~~G~~~~l~C~~~g~p~p~-v~W~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~I~~~~~~D~G~Y~C~a~ 83 (286)
+.+.+.+.+|..|+++.+-|... -|.|. ..|--. | .+... .++.....+.|.+++. | ..-.|.+.
T Consensus 6 v~v~P~~~vV~~G~Sv~VNCSts-C~~p~~~GLET~---L---~k~~~-----~~g~~W~~f~LsnV~~-d-s~~~C~~~ 71 (91)
T PF03921_consen 6 VRVSPEEPVVPPGGSVWVNCSTS-CPQPEKIGLETS---L---SKTEL-----DSGPQWKAFQLSNVTE-D-SSPLCFFN 71 (91)
T ss_dssp EEEESSEEEEETTEEEEEEEEES-SSS-SEEEEESS---S---EEEEE-----EEETTEEEEEEEEE-S-C-EEEEEEEE
T ss_pred EEEECCccEECCCCCEEEEEcCC-CCCCCcceEEEe---c---CCccc-----CCCCcEEEEEEEcccc-C-CeEEEEEE
Confidence 55778888999999999999874 34442 334211 1 11111 1122234577888885 5 45668765
No 429
>PF11141 DUF2914: Protein of unknown function (DUF2914); InterPro: IPR022606 This bacterial family of proteins has no known function.
Probab=24.08 E-value=1.9e+02 Score=18.11 Aligned_cols=59 Identities=17% Similarity=0.214 Sum_probs=35.5
Q ss_pred CeEEEEeCCeeCCCCCCceeeecCCCeeeEEEcccCCCCCeEEEEEEEecccceeeEEEEEE
Q psy15667 224 LTIRWLKDGKPLSPRFPVNVSDLDSFSSLLSINSVSAAHSGEYTCVASNTAAQARYSSKLQV 285 (286)
Q Consensus 224 ~~~~W~~~g~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~N~~g~~~~~~~L~V 285 (286)
....|+++++.+.. +.+......=.+..-..+.+.+.|.+........|..-......|
T Consensus 7 v~H~W~~~g~~~~~---i~l~i~g~r~Rt~S~k~~~~~~~G~WrV~V~~~~G~~l~~~~F~V 65 (66)
T PF11141_consen 7 VYHRWYKNGKLVAR---IPLPISGGRWRTWSSKQNFPDQPGDWRVEVVDEDGQVLGSLRFSV 65 (66)
T ss_pred EEEEEEECCEEEEE---EEEeccCCCEEEEEEeecCCCCCcCEEEEEEcCCCCEEEEEEEEE
Confidence 34579999986531 111111111112233344557899999999999888777776665
No 430
>PF01688 Herpes_gI: Alphaherpesvirus glycoprotein I; InterPro: IPR002874 This family consists of glycoprotein I from various members of the alphaherpesvirinae. These include Human herpesvirus 1 (HHV-1), Human herpesvirus 3 (HHV-3) and Suid herpesvirus 1 (Pseudorabies virus). Glycoprotein I (gI) is important during natural infection, mutants lacking gI produce smaller lesions at the site of infection and show reduced neuronal spread []. gI forms a heterodimeric complex with gE; this complex displays Fc receptor activity (binds to the Fc region of immunoglobulin) []. Glycoproteins are also important in the production of virus-neutralizing antibodies and cell mediated immunity []. The alphaherpesviridae have a dsDNA genome and have no RNA stage during viral replication.; GO: 0033643 host cell part
Probab=22.90 E-value=2e+02 Score=21.94 Aligned_cols=25 Identities=28% Similarity=0.239 Sum_probs=20.8
Q ss_pred cceEEEccCCCCCCeeEEEEEEcCC
Q psy15667 116 STSLVINPVGREDRGIYQCIARRSD 140 (286)
Q Consensus 116 ~~~l~i~~v~~~d~G~Y~C~a~~~~ 140 (286)
.-.|.|.+..++|+|.|.-..+-.+
T Consensus 123 ~~lL~i~~p~~~dsG~Y~lRV~l~~ 147 (161)
T PF01688_consen 123 GVLLRIRNPRPEDSGIYYLRVWLDG 147 (161)
T ss_pred ceEEEeCCCCcccceEEEEEEEECC
Confidence 3458999999999999998887654
No 431
>PHA03292 envelope glycoprotein I; Provisional
Probab=22.23 E-value=2.4e+02 Score=24.75 Aligned_cols=25 Identities=28% Similarity=0.323 Sum_probs=20.8
Q ss_pred eeeEEEcccCCCCCeEEEEEEEecc
Q psy15667 250 SSLLSINSVSAAHSGEYTCVASNTA 274 (286)
Q Consensus 250 ~~~L~i~~v~~~d~G~Y~C~a~N~~ 274 (286)
...|.|.+.+.+|+|.|.-...-..
T Consensus 127 ~vLL~I~~P~~~DSGiY~LRV~Ldg 151 (413)
T PHA03292 127 NVLLNITGPQPADSGAYILRVKLDH 151 (413)
T ss_pred ceEEEeCCCCcccceeEEEEEEeCC
Confidence 4589999999999999998766443
No 432
>PHA03289 envelope glycoprotein I; Provisional
Probab=21.57 E-value=2.1e+02 Score=24.46 Aligned_cols=26 Identities=23% Similarity=0.207 Sum_probs=20.9
Q ss_pred eeeEEEcccCCCCCeEEEEEEEeccc
Q psy15667 250 SSLLSINSVSAAHSGEYTCVASNTAA 275 (286)
Q Consensus 250 ~~~L~i~~v~~~d~G~Y~C~a~N~~g 275 (286)
+-.|.|.+.+.+|+|.|.-...=...
T Consensus 121 gvLL~I~~Pr~~DSGiYyLRV~Ldga 146 (352)
T PHA03289 121 GLLLTIIEPRMSDTGIYYIRVSLAGR 146 (352)
T ss_pred ceEEEeCCCCcccCeeEEEEEEeCCC
Confidence 44789999999999999987664433
No 433
>PHA03281 envelope glycoprotein E; Provisional
Probab=20.34 E-value=1.9e+02 Score=26.75 Aligned_cols=37 Identities=19% Similarity=0.372 Sum_probs=28.3
Q ss_pred eeeEEEcccCCCCCeEEEEEEEecccceee-EEEEEEC
Q psy15667 250 SSLLSINSVSAAHSGEYTCVASNTAAQARY-SSKLQVK 286 (286)
Q Consensus 250 ~~~L~i~~v~~~d~G~Y~C~a~N~~g~~~~-~~~L~V~ 286 (286)
.+.|.|.+++..++|.|+--.+..-|.... .+.|+|+
T Consensus 297 ~~vL~I~nAT~~naGVYtly~rg~~G~s~~svfLVtVk 334 (642)
T PHA03281 297 PGVLKFEHMEAHHAGVYIWNLQGSDGENMYATFLVKLK 334 (642)
T ss_pred CCeeEEEecccccceeEEEEecCCCCcceeEEEEEEec
Confidence 357899999999999999888876665444 5556554
No 434
>COG4953 PbpC Membrane carboxypeptidase/penicillin-binding protein PbpC [Cell envelope biogenesis, outer membrane]
Probab=20.28 E-value=3e+02 Score=26.36 Aligned_cols=44 Identities=23% Similarity=0.378 Sum_probs=31.1
Q ss_pred CeeEEEeeCCccCcCCCCcceEEEccCCCCCCeeEEEEEEcCCccee
Q psy15667 98 PYLIAWFKDGRQIPGRTSSTSLVINPVGREDRGIYQCIARRSDGDVA 144 (286)
Q Consensus 98 ~~~~~W~~~g~~l~~~~~~~~l~i~~v~~~d~G~Y~C~a~~~~g~~~ 144 (286)
...+.||-||..+........+ .-.+++.|.|+-.+....|...
T Consensus 682 ~~~~~W~lng~~l~~~~~~~~~---~w~~~~~G~~~ltVid~~G~~~ 725 (733)
T COG4953 682 RGPIYWFLNGEPLGEASRNRPV---TWKPEDAGYYKLTVIDASGRSA 725 (733)
T ss_pred cceeEEEeCCcCccccccCCcc---eeccCCCCeEEEEEEccCCcee
Confidence 3458999999998754322222 2356789999999998888653
No 435
>PF10430 Ig_Tie2_1: Tie-2 Ig-like domain 1; InterPro: IPR018941 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases. Protein kinases catalyse the transfer of the gamma phosphate from nucleotide triphosphates (often ATP) to one or more amino acid residues in a protein substrate side chain, resulting in a conformational change affecting protein function. Phosphoprotein phosphatases catalyse the reverse process. Protein kinases fall into three broad classes, characterised with respect to substrate specificity []: Serine/threonine-protein kinases Tyrosine-protein kinases Dual specific protein kinases (e.g. MEK - phosphorylates both Thr and Tyr on target proteins) Protein kinase function has been evolutionarily conserved from Escherichia coli to human []. Protein kinases play a role in a multitude of cellular processes, including division, proliferation, apoptosis, and differentiation []. Phosphorylation usually results in a functional change of the target protein by changing enzyme activity, cellular location, or association with other proteins. The catalytic subunits of protein kinases are highly conserved, and several structures have been solved [], leading to large screens to develop kinase-specific inhibitors for the treatments of a number of diseases []. Tyrosine-protein kinases can transfer a phosphate group from ATP to a tyrosine residue in a protein. These enzymes can be divided into two main groups []: Receptor tyrosine kinases (RTK), which are transmembrane proteins involved in signal transduction; they play key roles in growth, differentiation, metabolism, adhesion, motility, death and oncogenesis []. RTKs are composed of 3 domains: an extracellular domain (binds ligand), a transmembrane (TM) domain, and an intracellular catalytic domain (phosphorylates substrate). The TM domain plays an important role in the dimerisation process necessary for signal transduction []. Cytoplasmic / non-receptor tyrosine kinases, which act as regulatory proteins, playing key roles in cell differentiation, motility, proliferation, and survival. For example, the Src-family of protein-tyrosine kinases []. Angiogenesis is a physiological process whereby new blood vessels are formed from existing ones. It is essential for tissue repair and regeneration during wound healing but also plays important roles in many pathological processes including tumor growth and metastasis [, ]. Angiogenesis is regulated in part by the receptor protein tyrosine kinase Tie2 and its ligands, the angiopoietins. The angiopoietin-binding site is harbord by the N-terminal two immunoglobulin-like (Ig-like) domains of Tie2 []. The angiopoietin-1 receptor contains the Tie-2 Ig-like domain. This protein is a tyrosine-kinase transmembrane receptor for angiopoietin 1. It probably regulates endothelial cell proliferation, differentiation and guides the proper patterning of endothelial cells during blood vessel formation. Tie2 contains not two but three immunoglobulin domains. They fold together with the three epidermal growth factor domains to form a compact, arrowhead-shaped structure [].; GO: 0004714 transmembrane receptor protein tyrosine kinase activity, 0005524 ATP binding, 0006468 protein phosphorylation, 0007169 transmembrane receptor protein tyrosine kinase signaling pathway, 0005887 integral to plasma membrane; PDB: 2GY7_B 2GY5_A.
Probab=20.14 E-value=2.9e+02 Score=18.67 Aligned_cols=19 Identities=16% Similarity=0.286 Sum_probs=13.4
Q ss_pred CeEEEEEEE-ecccceeeEE
Q psy15667 263 SGEYTCVAS-NTAAQARYSS 281 (286)
Q Consensus 263 ~G~Y~C~a~-N~~g~~~~~~ 281 (286)
.|.|.|+.+ |..+..-+++
T Consensus 75 ~GayyCegk~r~~~~rI~Tm 94 (96)
T PF10430_consen 75 IGAYYCEGKVRDEVTRIHTM 94 (96)
T ss_dssp -EEEEEEEEETTEEEEEEEE
T ss_pred cceEEEEEEecCceEEEEEe
Confidence 799999998 6666655554
Done!