RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy15667
(286 letters)
>3dmk_A DOWN syndrome cell adhesion molecule (dscam) ISOF 1.30.30,
N-terminal eight IG domains...; immunoglobulin domain;
HET: NAG NDG; 4.19A {Drosophila melanogaster}
Length = 816
Score = 213 bits (544), Expect = 7e-64
Identities = 97/321 (30%), Positives = 151/321 (47%), Gaps = 73/321 (22%)
Query: 2 PPILTYSFIEQTLQPGPAVSLKCIASGNPTPDIGWTLDGFELPTNNRFVIGQFVSGHGDV 61
PP++ +F E+T++PGP+V LKC+A GNPTP+I W LDG ++ N+R+ +GQ+V+ +GDV
Sbjct: 429 PPVIRQAFQEETMEPGPSVFLKCVAGGNPTPEISWELDGKKIANNDRYQVGQYVTVNGDV 488
Query: 62 ISHVNISHVTVEDGGEYACVAENRAGTCEIT--------PYDSGP--------------- 98
+S++NI+ V DGG Y C+A+++ G E + PY
Sbjct: 489 VSYLNITSVHANDGGLYKCIAKSKVGVAEHSAKLNVYGLPYIRQMEKKAIVAGETLIVTC 548
Query: 99 -------YLIAWFKDGRQIP-----GRTSSTSLVINPVGR-EDRGIYQCIARRSDGDVAQ 145
I W +D R +P + +L+I V R D+ Y C+A+ +G A+
Sbjct: 549 PVAGYPIDSIVWERDNRALPINRKQKVFPNGTLIIENVERNSDQATYTCVAKNQEGYSAR 608
Query: 146 GSAELQLGGLPYVRLIPKVTAIDGEGLSIKCPVAGYPIEEVHWEKVPPKIESFAFPFDGL 205
GS E+Q+ V P+I FAF
Sbjct: 609 GSLEVQV-------------------------------------MVLPRIIPFAFEEGPA 631
Query: 206 PEGARTRVICGVTHGDPPLTIRWLKDGKPLSPRFPVNVSDLDSFSSLLSINSVSAAHSGE 265
G + C V GD PL I W DG+ +S + S + S+L+I +V A+H+G
Sbjct: 632 QVGQYLTLHCSVPGGDLPLNIDWTLDGQAISEDLGITTSRVGRRGSVLTIEAVEASHAGN 691
Query: 266 YTCVASNTAAQARYSSKLQVK 286
+TC A N A ++++ L V
Sbjct: 692 FTCHARNLAGHQQFTTPLNVY 712
Score = 160 bits (407), Expect = 6e-45
Identities = 76/324 (23%), Positives = 107/324 (33%), Gaps = 85/324 (26%)
Query: 2 PPILTYSFIEQTLQPGPAVSLKCIASGNPTPDIGWTLDGFELPTNNRFVIGQFVSGHGDV 61
+ F +T ++L C A G P P W V+ V
Sbjct: 248 KVVSLAKFDMKTYSGSSTMALLCPAQGYPVPVFRWYKFIEGTTRKQAVVLNDRVKQVSGT 307
Query: 62 ISHVNISHVTVEDGGEYACVAENRAGTCEIT--------PY----------DSG------ 97
+ I VED G+Y CV N G + D G
Sbjct: 308 LI---IKDAVVEDSGKYLCVVNNSVGGESVETVLTVTAPLSAKIDPPTQTVDFGRPAVFT 364
Query: 98 -------PYLIAWFKDGRQIPGRTSSTSLVINPVGREDRGIYQCIARRSDGDVAQGSAEL 150
++W KDG+ I S + L I V +ED+G+YQC R A+ SAEL
Sbjct: 365 CQYTGNPIKTVSWMKDGKAIG--HSESVLRIESVKKEDKGMYQCFVRNDRES-AEASAEL 421
Query: 151 QLGGL---PYVRLIPK-VTAIDGEGLSIKCPVAGYPIEEVHWEKVPPKIESFAFPFDGLP 206
+LGG P +R + T G + +KC
Sbjct: 422 KLGGRFDPPVIRQAFQEETMEPGPSVFLKCVA---------------------------- 453
Query: 207 EGARTRVICGVTHGDPPLTIRWLKDGKPLSP----RFPVNVSDLDSFSSLLSINSVSAAH 262
G+P I W DGK ++ + V+ S L+I SV A
Sbjct: 454 ------------GGNPTPEISWELDGKKIANNDRYQVGQYVTVNGDVVSYLNITSVHAND 501
Query: 263 SGEYTCVASNTAAQARYSSKLQVK 286
G Y C+A + A +S+KL V
Sbjct: 502 GGLYKCIAKSKVGVAEHSAKLNVY 525
Score = 134 bits (338), Expect = 2e-35
Identities = 75/335 (22%), Positives = 105/335 (31%), Gaps = 109/335 (32%)
Query: 1 TPPILTYSFIEQTLQPGPAVSLKCIASGNPTPDIGWTLDGFELPTNNRFVIGQFVSGHGD 60
P QT+ G C +GNP + W DG + + +
Sbjct: 342 APLSAKIDPPTQTVDFGRPAVFTCQYTGNPIKTVSWMKDGKAIGHSESVLR--------- 392
Query: 61 VISHVNISHVTVEDGGEYACVAENRAGTCE------ITPYDSGPYL-------------- 100
I V ED G Y C N + E + P +
Sbjct: 393 ------IESVKKEDKGMYQCFVRNDRESAEASAELKLGGRFDPPVIRQAFQEETMEPGPS 446
Query: 101 --------------IAWFKDGRQIPG-------------RTSSTSLVINPVGREDRGIYQ 133
I+W DG++I + L I V D G+Y+
Sbjct: 447 VFLKCVAGGNPTPEISWELDGKKIANNDRYQVGQYVTVNGDVVSYLNITSVHANDGGLYK 506
Query: 134 CIARRSDGDVAQGSAELQLGGLPYVRLIPKVTAIDGEGLSIKCPVAGYPIEEVHWEKVPP 193
CIA+ G VA+ SA+L + GLPY+R + K + GE L + CPVA
Sbjct: 507 CIAKSKVG-VAEHSAKLNVYGLPYIRQMEKKAIVAGETLIVTCPVA-------------- 551
Query: 194 KIESFAFPFDGLPEGARTRVICGVTHGDPPLTIRWLKDGKPLSPRFPVNVSDLDSFSSLL 253
G P +I W +D + L V + L
Sbjct: 552 --------------------------GYPIDSIVWERDNRALPINRKQKVFPNGT----L 581
Query: 254 SINSVSAAH-SGEYTCVASNTAAQ-ARYSSKLQVK 286
I +V YTCVA N AR S ++QV
Sbjct: 582 IIENVERNSDQATYTCVAKNQEGYSARGSLEVQVM 616
Score = 129 bits (325), Expect = 7e-34
Identities = 53/320 (16%), Positives = 84/320 (26%), Gaps = 98/320 (30%)
Query: 12 QTLQPGPAVSLKCIASGNPTPDIGWTLDGFELPTNNRFVIGQFVSGHGDVISHVNISHVT 71
+ + G + + C +G P I W D LP N + + +G +I I +V
Sbjct: 536 KAIVAGETLIVTCPVAGYPIDSIVWERDNRALPINRKQKV----FPNGTLI----IENVE 587
Query: 72 V-EDGGEYACVAENRAG-----------------------------------TCEITPYD 95
D Y CVA+N+ G C + D
Sbjct: 588 RNSDQATYTCVAKNQEGYSARGSLEVQVMVLPRIIPFAFEEGPAQVGQYLTLHCSVPGGD 647
Query: 96 SGPYLIAWFKDGRQIPGR---------TSSTSLVINPVGREDRGIYQCIARRSDGDVAQG 146
P I W DG+ I + L I V G + C A R+ Q
Sbjct: 648 L-PLNIDWTLDGQAISEDLGITTSRVGRRGSVLTIEAVEASHAGNFTCHA-RNLAGHQQF 705
Query: 147 SAELQLGGLPYVRLIPK-VTAIDGEGLSIKCPVAGYPIEEVHWEKVPPKIESFAFPFDGL 205
+ L + P L P G ++C
Sbjct: 706 TTPLNVYVPPRWILEPTDKAFAQGSDAKVECKAD-------------------------- 739
Query: 206 PEGARTRVICGVTHGDPPLTIRWLKDGKPLSPRFPVNVSDLDSF--SSLLSINSVSAAHS 263
G P + W K + + L ++++ +
Sbjct: 740 --------------GFPKPQVTWKKAVGDTPGEYKDLKKSDNIRVEEGTLHVDNIQKTNE 785
Query: 264 GEYTCVASNTAAQARYSSKL 283
G Y C A N + +
Sbjct: 786 GYYLCEAINGIGSGLSAVIM 805
Score = 128 bits (323), Expect = 1e-33
Identities = 60/333 (18%), Positives = 90/333 (27%), Gaps = 78/333 (23%)
Query: 2 PPILTYSFIEQTLQPGPAVSLKCIASGNPTPDIGWTLDGFELPTNNRFVIGQFVSGHGDV 61
P L ++C ASGNP P+I W + + G V
Sbjct: 39 PVFLKEPTNRIDFSNSTGAEIECKASGNPMPEIIWIRSDGTAVGDVPGLRQISSDGKL-V 97
Query: 62 ISHVNISHVTVE-DGGEYACVAENRAGT-------------------------------- 88
E YAC+A N+ G+
Sbjct: 98 FPPFRAEDYRQEVHAQVYACLARNQFGSIISRDVHVRAVVAQYYEADVNKEHVIRGNSAV 157
Query: 89 --CEITPYDSGP-YLIAWFKDGRQIPGR----------TSSTSLVINPVGRED-RGIYQC 134
C I + + +++W D + S L I VG ED YQC
Sbjct: 158 IKCLIPSFVADFVEVVSWHTDEEENYFPGAEYDGKYLVLPSGELHIREVGPEDGYKSYQC 217
Query: 135 IARRSDGDVAQGSAELQLGGLPYVRLIPKVTAIDGEGLSIKCPVAGYPIEEVHWEKVPPK 194
+ + SA I E VP
Sbjct: 218 RTKHRLTGETRLSATKGR----------------------------LVITEPISSAVPKV 249
Query: 195 IESFAFPFDGLPEGARTRVICGVTHGDPPLTIRWLKDGKPLSPRFPVNVSD-LDSFSSLL 253
+ F + ++C G P RW K + + + V ++D + S L
Sbjct: 250 VSLAKFDMKTYSGSSTMALLCPAQ-GYPVPVFRWYKFIEGTTRKQAVVLNDRVKQVSGTL 308
Query: 254 SINSVSAAHSGEYTCVASNTAAQARYSSKLQVK 286
I SG+Y CV +N+ + L V
Sbjct: 309 IIKDAVVEDSGKYLCVVNNSVGGESVETVLTVT 341
Score = 106 bits (266), Expect = 5e-26
Identities = 53/342 (15%), Positives = 89/342 (26%), Gaps = 112/342 (32%)
Query: 2 PPILTYSFIEQTLQPGPAVSLKCIA---SGNPTPDIGWTLDGFELPTNNRFVIGQFVSGH 58
++ + G + +KC+ + + W D E G+++
Sbjct: 138 AQYYEADVNKEHVIRGNSAVIKCLIPSFVADFVEVVSWHTDEEENYFPGAEYDGKYLVLP 197
Query: 59 GDVISHVNISHVTVEDG-GEYACVAENRAGTCEIT------------PYDSGPYLIA--- 102
++I V EDG Y C ++R + P +++
Sbjct: 198 S---GELHIREVGPEDGYKSYQCRTKHRLTGETRLSATKGRLVITEPISSAVPKVVSLAK 254
Query: 103 ---------------------------WFKDGRQIP----------GRTSSTSLVINPVG 125
W+K + S +L+I
Sbjct: 255 FDMKTYSGSSTMALLCPAQGYPVPVFRWYKFIEGTTRKQAVVLNDRVKQVSGTLIIKDAV 314
Query: 126 REDRGIYQCIARRSDGDVAQGSAELQLGGLPYVRLIPKVTAID-GEGLSIKCPVAGYPIE 184
ED G Y C+ S G L + ++ P +D G C G
Sbjct: 315 VEDSGKYLCVVNNSVGG-ESVETVLTVTAPLSAKIDPPTQTVDFGRPAVFTCQYTGN--- 370
Query: 185 EVHWEKVPPKIESFAFPFDGLPEGARTRVICGVTHGDPPLTIRWLKDGKPLSPRFPVNVS 244
P T+ W+KDGK +
Sbjct: 371 -------------------------------------PIKTVSWMKDGKAIGHS------ 387
Query: 245 DLDSFSSLLSINSVSAAHSGEYTCVASNTAAQARYSSKLQVK 286
S+L I SV G Y C N A S++L++
Sbjct: 388 -----ESVLRIESVKKEDKGMYQCFVRNDRESAEASAELKLG 424
Score = 91.2 bits (226), Expect = 8e-21
Identities = 38/192 (19%), Positives = 60/192 (31%), Gaps = 48/192 (25%)
Query: 2 PPILTYSFIEQTLQPGPAVSLKCIASGNPTP-DIGWTLDGFELPTNNRFVIGQFVSGHGD 60
P I+ ++F E Q G ++L C G P +I WTLDG + + +
Sbjct: 619 PRIIPFAFEEGPAQVGQYLTLHCSVPGGDLPLNIDWTLDGQAISEDLGITTSRVGRRGSV 678
Query: 61 VISHVNISHVTVEDGGEYACVAENRAGTCEIT--------------PYD----------- 95
+ I V G + C A N AG + T P D
Sbjct: 679 LT----IEAVEASHAGNFTCHARNLAGHQQFTTPLNVYVPPRWILEPTDKAFAQGSDAKV 734
Query: 96 ----SG--PYLIAWFKDGRQIPG-----------RTSSTSLVINPVGREDRGIYQCIARR 138
G + W K PG R +L ++ + + + G Y C A
Sbjct: 735 ECKADGFPKPQVTWKKAVGDTPGEYKDLKKSDNIRVEEGTLHVDNIQKTNEGYYLCEA-I 793
Query: 139 SDGDVAQGSAEL 150
+ + +
Sbjct: 794 NGIGSGLSAVIM 805
Score = 86.5 bits (214), Expect = 4e-19
Identities = 37/266 (13%), Positives = 56/266 (21%), Gaps = 87/266 (32%)
Query: 66 NISHVTVEDGGEYACVAENRAGTCEIT-----PYDSGPYL-------------------- 100
N+ + ++ +A VA G+ + GP
Sbjct: 2 NMPNERLKWLMLFAAVALIACGSQTLAANPPDADQKGPVFLKEPTNRIDFSNSTGAEIEC 61
Query: 101 ---------IAWFKDGRQIPG-------RTSSTSLVINPVGREDR------GIYQCIARR 138
I W + G +S LV P ED +Y C+AR
Sbjct: 62 KASGNPMPEIIWIRSDGTAVGDVPGLRQISSDGKLVFPPFRAEDYRQEVHAQVYACLARN 121
Query: 139 SDGDVAQGSAELQLGGLPYVRLIPK-VTAIDGEGLSIKCPVAGYPIEEVHWEKVPPKIES 197
G + ++ Y I G IKC + +
Sbjct: 122 QFGSIISRDVHVRAVVAQYYEADVNKEHVIRGNSAVIKCLIPSFV--------------- 166
Query: 198 FAFPFDGLPEGARTRVICGVTHGDPPLTIRWLKDGKPLSPRFPVNVSDLDSFSS-LLSIN 256
D + W D + S L I
Sbjct: 167 ----------------------ADFVEVVSWHTDEEENYFPGAEYDGKYLVLPSGELHIR 204
Query: 257 SVSAAHS-GEYTCVASNTAAQARYSS 281
V Y C + S
Sbjct: 205 EVGPEDGYKSYQCRTKHRLTGETRLS 230
Score = 56.5 bits (136), Expect = 3e-09
Identities = 17/163 (10%), Positives = 36/163 (22%), Gaps = 47/163 (28%)
Query: 119 LVINPVGREDRGIYQCIARRSDG-DVAQGSAELQLGGLPY--VRLIPKVTAIDGEGLSIK 175
+ + + ++ +A + G + P ++ + G I+
Sbjct: 1 MNMPNERLKWLMLFAAVALIACGSQTLAANPPDADQKGPVFLKEPTNRIDFSNSTGAEIE 60
Query: 176 CPVAGYPIEEVHWEKVPPKIESFAFPFDGLPEGARTRVICGVTHGDPPLTIRWLKDGKPL 235
C G+P I W++
Sbjct: 61 CKA----------------------------------------SGNPMPEIIWIRSDGTA 80
Query: 236 SPRFPVNVSDLDS----FSSLLSINSVSAAHSGEYTCVASNTA 274
P F + + H+ Y C+A N
Sbjct: 81 VGDVPGLRQISSDGKLVFPPFRAEDYRQEVHAQVYACLARNQF 123
Score = 33.8 bits (77), Expect = 0.071
Identities = 2/31 (6%), Positives = 9/31 (29%)
Query: 253 LSINSVSAAHSGEYTCVASNTAAQARYSSKL 283
+++ + + VA ++
Sbjct: 1 MNMPNERLKWLMLFAAVALIACGSQTLAANP 31
>3p3y_A Neurofascin; IG domains, cell adhesion; HET: NAG; 2.60A {Homo
sapiens} PDB: 3p40_A*
Length = 404
Score = 166 bits (423), Expect = 3e-49
Identities = 68/328 (20%), Positives = 99/328 (30%), Gaps = 77/328 (23%)
Query: 2 PPILTYSFIEQTLQPGPAVSLKCIASGNPTPDIGWTLDGFELPTNNRFVIGQFVSGHGDV 61
P I S + + P + ++C A GNP P WT + + G +
Sbjct: 17 PTITKQSAKDHIVDPRDNILIECEAKGNPAPSFHWTRNSRFFNIAKDPRVSMRRRS-GTL 75
Query: 62 ISHVNISHVTVEDGGEYACVAENRAGT--------------------------------- 88
+ E GEY C A N+ GT
Sbjct: 76 VIDFRSGGRPEEYEGEYQCFARNKFGTALSNRIRLQVSKSPLWPKENLDPVVVQEGAPLT 135
Query: 89 --CEITPYDSGPYLIAWFKDGRQIP---GRTSST---SLVINPVGRED-RGIYQCIARRS 139
C P +I W + R S L + V +D + Y C AR
Sbjct: 136 LQCNP-PPGLPSPVIFWMSSSMEPITQDKRVSQGHNGDLYFSNVMLQDMQTDYSCNARFH 194
Query: 140 DGDVAQGSAELQLGGLPYVRLIPKVTAIDGEGLSIKCPVAGYPIEEVHWEKVPPKIESFA 199
Q L KV G E+ P +
Sbjct: 195 FTHTIQQKNPFTL----------KVLTTRGVA-----------------ERTPSFMYPQG 227
Query: 200 FPFD-GLPEGARTRVICGVTHGDPPLTIRWLKDGKPLSPRFPVNVSDLDSFSSLLSINSV 258
+ G + C + G P I W K G L P + + ++F+ L I +V
Sbjct: 228 TASSQMVLRGMDLLLECIAS-GVPTPDIAWYKKGGDL----PSDKAKFENFNKALRITNV 282
Query: 259 SAAHSGEYTCVASNTAAQARYSSKLQVK 286
S SGEY C+ASN R++ ++VK
Sbjct: 283 SEEDSGEYFCLASNKMGSIRHTISVRVK 310
Score = 116 bits (292), Expect = 3e-30
Identities = 61/336 (18%), Positives = 102/336 (30%), Gaps = 102/336 (30%)
Query: 2 PPILTYSFIEQTLQPGPAVSLKC-IASGNPTPDIGWTLDGFELPTNNRFVIGQFVSGHGD 60
P + +Q G ++L+C G P+P I W E T ++ V +GD
Sbjct: 116 PLWPKENLDPVVVQEGAPLTLQCNPPPGLPSPVIFWMSSSMEPITQDKRVS---QGHNGD 172
Query: 61 VISHVNISHVTVED-GGEYACVAENRAG------------------TCEITPYDSGPYL- 100
+ S+V ++D +Y+C A E TP P
Sbjct: 173 LY----FSNVMLQDMQTDYSCNARFHFTHTIQQKNPFTLKVLTTRGVAERTPSFMYPQGT 228
Query: 101 -------------------------IAWFKDGRQIPG-----RTSSTSLVINPVGREDRG 130
IAW+K G +P + +L I V ED G
Sbjct: 229 ASSQMVLRGMDLLLECIASGVPTPDIAWYKKGGDLPSDKAKFENFNKALRITNVSEEDSG 288
Query: 131 IYQCIARRSDGDVAQGSAELQLGGLPYVRLIPK-VTAIDGEGLSIKCPVAGYPIEEVHWE 189
Y C+A G + + +++ PY PK + GE + C
Sbjct: 289 EYFCLASNKMGSIRH-TISVRVKAAPYWLDEPKNLILAPGEDGRLVCRA----------- 336
Query: 190 KVPPKIESFAFPFDGLPEGARTRVICGVTHGDPPLTIRWLKDGKPLSPRFPVNVSDLDSF 249
+G+P T++W+ +G+PL P ++
Sbjct: 337 -----------------------------NGNPKPTVQWMVNGEPLQSAPPNPNREVAG- 366
Query: 250 SSLLSINSVSAAHSGEYTCVASNTAAQARYSSKLQV 285
+ + Y C SN ++ + V
Sbjct: 367 -DTIIFRDTQISSRAVYQCNTSNEHGYLLANAFVSV 401
Score = 57.6 bits (139), Expect = 1e-09
Identities = 20/100 (20%), Positives = 33/100 (33%), Gaps = 5/100 (5%)
Query: 190 KVPPKIESFAFPFDGLPEGARTRVICGVTHGDPPLTIRWLKDGKPLSPRFPVNVSDLDSF 249
PP I + + + C G+P + W ++ + + VS
Sbjct: 14 TQPPTITKQSAKDHIVDPRDNILIECEAK-GNPAPSFHWTRNSRFFNIAKDPRVSMRRRS 72
Query: 250 SSLLS---INSVSAAHSGEYTCVASNTAAQAR-YSSKLQV 285
+L+ + GEY C A N A +LQV
Sbjct: 73 GTLVIDFRSGGRPEEYEGEYQCFARNKFGTALSNRIRLQV 112
>3b43_A Titin; I-SET IG fold, extended poly-IG filament, elastic FIL
structural protein; 3.30A {Oryctolagus cuniculus}
Length = 570
Score = 168 bits (428), Expect = 1e-48
Identities = 63/327 (19%), Positives = 99/327 (30%), Gaps = 88/327 (26%)
Query: 1 TPPILTYSFIEQTLQPGPAVSLKCIASGNPTPDIGWTLDGFELPTNNRFVIGQFVSGHGD 60
PP + L G + + KC +G I W D E+ + + +
Sbjct: 196 VPPFFDLKPVSVDLALGESGTFKCHVTGTAPIKITWAKDNREIRPGGNYKMTLVENTA-- 253
Query: 61 VISHVNISHVTVEDGGEYACVAENRAGTCEIT--------PY-----------DSG---- 97
+ + VT D G+Y C A N AG + P
Sbjct: 254 ---TLTVLKVTKGDAGQYTCYASNVAGKDSCSAQLGVQEPPRFIKKLEPSRIVKQDEHTR 310
Query: 98 ---------PYLIAWFKDGRQIP--------GRTSSTSLVINPVGREDRGIYQCIARRSD 140
+ W+KD +I S L + + ED G Y C A +
Sbjct: 311 YECKIGGSPEIKVLWYKDETEIQESSKFRMSFVESVAVLEMYNLSVEDSGDYTCEAHNAA 370
Query: 141 GDVAQGSAELQLGGLPYVRLIPK-VTAIDGEGLSIKCPVAGYPIEEVHWEKVPPKIESFA 199
G A S L++ P R P V + G + ++C +
Sbjct: 371 GS-ASSSTSLKVKEPPVFRKKPHPVETLKGADVHLECEL--------------------- 408
Query: 200 FPFDGLPEGARTRVICGVTHGDPPLTIRWLKDGKPLSPRFPVNVSDLDSFSSLLSINSVS 259
G PP + W KD + L + ++F + + I +V
Sbjct: 409 -------------------QGTPPFQVSWHKDKRELRSGKKYKIMS-ENFLTSIHILNVD 448
Query: 260 AAHSGEYTCVASNTAAQARYSSKLQVK 286
+A GEY C ASN + +K
Sbjct: 449 SADIGEYQCKASNDVGSDTCVGSITLK 475
Score = 161 bits (409), Expect = 6e-46
Identities = 63/330 (19%), Positives = 102/330 (30%), Gaps = 91/330 (27%)
Query: 1 TPPILTYSFIEQTLQPGPAVSLKCIASGNPTPDIGWTLDGFELPTNNRFVIGQFVSGHGD 60
PP + G V+ +C +G+ + W DG L + +
Sbjct: 100 LPPSFARKLKDVHETLGFPVAFECRINGSEPLQVSWYKDGELLKDDANLQTSFIHNVA-- 157
Query: 61 VISHVNISHVTVEDGGEYACVAENRAGTCE------ITPYDSGPYL-------------- 100
+ I G+Y C A N GT ++ ++ P+
Sbjct: 158 ---TLQILQTDQSHVGQYNCSASNPLGTASSSAKLTLSEHEVPPFFDLKPVSVDLALGES 214
Query: 101 --------------IAWFKDGRQIPGR--------TSSTSLVINPVGREDRGIYQCIARR 138
I W KD R+I ++ +L + V + D G Y C A
Sbjct: 215 GTFKCHVTGTAPIKITWAKDNREIRPGGNYKMTLVENTATLTVLKVTKGDAGQYTCYASN 274
Query: 139 SDGDVAQGSAELQLGGLPYV--RLIPKVTAIDGEGLSIKCPVAGYPIEEVHWEKVPPKIE 196
G SA+L + P +L P E +C + G P
Sbjct: 275 VAGK-DSCSAQLGVQEPPRFIKKLEPSRIVKQDEHTRYECKIGGSP-------------- 319
Query: 197 SFAFPFDGLPEGARTRVICGVTHGDPPLTIRWLKDGKPLSPRFPVNVSDLDSFSSLLSIN 256
+ + W KD + +S ++S + L +
Sbjct: 320 --------------------------EIKVLWYKDETEIQESSKFRMSFVESVAV-LEMY 352
Query: 257 SVSAAHSGEYTCVASNTAAQARYSSKLQVK 286
++S SG+YTC A N A A S+ L+VK
Sbjct: 353 NLSVEDSGDYTCEAHNAAGSASSSTSLKVK 382
Score = 158 bits (400), Expect = 1e-44
Identities = 71/333 (21%), Positives = 108/333 (32%), Gaps = 97/333 (29%)
Query: 2 PPILTYSFIEQTLQPGPAVSLKCIASGNPTPDIGWTLDGFELPTNNRFVIGQFVSGHGDV 61
PP G ++L+C G P I W + +L + + + + V
Sbjct: 5 PPYFIEPLEHVEAAIGEPITLQCKVDGTPEIRIAWYKEHTKLRSAPAYKMQFKNNVASLV 64
Query: 62 ISHVNISHVTVEDGGEYACVAENRAGT--------------------------------- 88
I+ V D GEY C AEN G
Sbjct: 65 -----INKVDHSDVGEYTCKAENSVGAVASSAVLVIKERKLPPSFARKLKDVHETLGFPV 119
Query: 89 ---CEITPYDSGPYLIAWFKDGRQIPGRTSST--------SLVINPVGREDRGIYQCIAR 137
C I + P ++W+KDG + + +L I + G Y C A
Sbjct: 120 AFECRINGSE--PLQVSWYKDGELLKDDANLQTSFIHNVATLQILQTDQSHVGQYNCSAS 177
Query: 138 RSDGDVAQGSAELQLGGL---PYVRLIPK-VTAIDGEGLSIKCPVAGYPIEEVHWEKVPP 193
G A SA+L L P+ L P V GE + KC V G
Sbjct: 178 NPLGT-ASSSAKLTLSEHEVPPFFDLKPVSVDLALGESGTFKCHVTGT------------ 224
Query: 194 KIESFAFPFDGLPEGARTRVICGVTHGDPPLTIRWLKDGKPLSPRFPVNVSDLDSFSSLL 253
P+ I W KD + + P ++ L ++ L
Sbjct: 225 ----------------------------APIKITWAKDNREIRPGGNYKMT-LVENTATL 255
Query: 254 SINSVSAAHSGEYTCVASNTAAQARYSSKLQVK 286
++ V+ +G+YTC ASN A + S++L V+
Sbjct: 256 TVLKVTKGDAGQYTCYASNVAGKDSCSAQLGVQ 288
Score = 140 bits (355), Expect = 3e-38
Identities = 57/325 (17%), Positives = 103/325 (31%), Gaps = 86/325 (26%)
Query: 2 PPILTYSFIEQTLQPGPAVSLKCIASGNPTPDIGWTLDGFELPTNNRFVIGQFVSGHGDV 61
P + + ++ +C G+P + W D E+ +++F + FV +
Sbjct: 291 PRFIKKLEPSRIVKQDEHTRYECKIGGSPEIKVLWYKDETEIQESSKFRM-SFVESVAVL 349
Query: 62 ISHVNISHVTVEDGGEYACVAENRAG----TCEIT----------PYD------------ 95
+ +++VED G+Y C A N AG + + P+
Sbjct: 350 E----MYNLSVEDSGDYTCEAHNAAGSASSSTSLKVKEPPVFRKKPHPVETLKGADVHLE 405
Query: 96 ---SG--PYLIAWFKDGRQIP--GRTS------STSLVINPVGREDRGIYQCIARRSDGD 142
G P+ ++W KD R++ + TS+ I V D G YQC A G
Sbjct: 406 CELQGTPPFQVSWHKDKRELRSGKKYKIMSENFLTSIHILNVDSADIGEYQCKASNDVG- 464
Query: 143 VAQGSAELQLGGLPYVRLIPK-VTAIDGEGLSIKCPVAGYPIEEVHWEKVPPKIESFAFP 201
+ L P ++ + GE + ++ + G
Sbjct: 465 SDTCVGSITLKAPPRFVKKLSDISTVVGEEVQLQATIEG--------------------- 503
Query: 202 FDGLPEGARTRVICGVTHGDPPLTIRWLKDGKPLSPRFPVNVSDLDSFSSLLSINSVSAA 261
P+++ W KD + + L + A
Sbjct: 504 -------------------AEPISVAWFKDKGEIVRESDNIWISYSENIATLQFSRAEPA 544
Query: 262 HSGEYTCVASNTAAQARYSSKLQVK 286
++G+YTC N A + L V
Sbjct: 545 NAGKYTCQIKNEAGTQECFATLSVL 569
>3laf_A Deleted in colorectal cancer; netrin-1 receptor, immunoglobulin
superfamily, horseshoe, AP; HET: NAG BMA; 2.40A {Rattus
norvegicus}
Length = 403
Score = 158 bits (401), Expect = 5e-46
Identities = 60/331 (18%), Positives = 93/331 (28%), Gaps = 87/331 (26%)
Query: 2 PPILTYSFIEQTLQPGPAVSLKCIASGN-PTPDIGWTLDGFELPTNNRFVIGQFVSGHGD 60
+ G V L C A + P I W DG L Q +
Sbjct: 21 SLHFVSEPSDAVTMRGGNVLLNCSAESDRGVPVIKWKKDGLILALGMDDRK-QQLPNGSL 79
Query: 61 VISHVNISHVTVEDGGEYACVAENRAG--------------------------------- 87
+I ++ S D G Y C A
Sbjct: 80 LIQNILHSRHHKPDEGLYQCEASLGDSGSIISRTAKVMVAGPLRFLSQTESITAFMGDTV 139
Query: 88 --TCEIT--PYDSGPYLIAWFKDGRQIPGRTSST--------SLVINPVGREDRGIYQCI 135
CE+ P + I W K+ + + + +L I+ + D G+Y+C
Sbjct: 140 LLKCEVIGDPMPT----IHWQKNQQDLNPIPGDSRVVVLPSGALQISRLQPGDSGVYRCS 195
Query: 136 ARRSDGDVAQGSAELQLGGLPYVRLIPKVTAIDGEGLSIKCPVAGYPIEEVHWEKVPPKI 195
AR AE+++ P + P
Sbjct: 196 ARNPASTRTGNEAEVRILSDPGLHRQLYFL-------------------------QRPSN 230
Query: 196 ESFAFPFDGLPEGARTRVICGVTHGDPPLTIRWLKDGKPLSPRFPVNVSDLDSFSSLLSI 255
EG + C V+ G PP + WL+ + + R S L I
Sbjct: 231 VI-------AIEGKDAVLECCVS-GYPPPSFTWLRGEEVIQLRSKKYSLL---GGSNLLI 279
Query: 256 NSVSAAHSGEYTCVASNTAAQARYSSKLQVK 286
++V+ SG YTCV + S++L V
Sbjct: 280 SNVTDDDSGTYTCVVTYKNENISASAELTVL 310
Score = 134 bits (340), Expect = 4e-37
Identities = 73/334 (21%), Positives = 107/334 (32%), Gaps = 101/334 (30%)
Query: 1 TPPILTYSFIEQTLQPGPAVSLKCIASGNPTPDIGWTLDGFEL---PTNNRFVIGQFVSG 57
P T G V LKC G+P P I W + +L P ++R V+ SG
Sbjct: 120 GPLRFLSQTESITAFMGDTVLLKCEVIGDPMPTIHWQKNQQDLNPIPGDSRVVV--LPSG 177
Query: 58 HGDVISHVNISHVTVEDGGEYACVAENRAGTCE---------------------ITPYD- 95
+ IS + D G Y C A N A T P +
Sbjct: 178 A------LQISRLQPGDSGVYRCSARNPASTRTGNEAEVRILSDPGLHRQLYFLQRPSNV 231
Query: 96 --------------SG--PYLIAWFKDGRQIPGR------TSSTSLVINPVGREDRGIYQ 133
SG P W + I R ++L+I+ V +D G Y
Sbjct: 232 IAIEGKDAVLECCVSGYPPPSFTWLRGEEVIQLRSKKYSLLGGSNLLISNVTDDDSGTYT 291
Query: 134 CIARRSDGDVAQGSAELQLGGLPYVRLIPK-VTAIDGEGLSIKCPVAGYPIEEVHWEKVP 192
C+ + ++ SAEL + P+ P + A + + +C V
Sbjct: 292 CVVTYKNENI-SASAELTVLVPPWFLNHPSNLYAYESMDIEFECAV-------------- 336
Query: 193 PKIESFAFPFDGLPEGARTRVICGVTHGDPPLTIRWLKDGKPLSPRFPVNVSDLDSFSSL 252
G P T+ W+K+G + P + S
Sbjct: 337 --------------------------SGKPVPTVNWMKNGDVVIPSDYFQIVG----GSN 366
Query: 253 LSINSVSAAHSGEYTCVASNTAAQARYSSKLQVK 286
L I V + G Y CVA N A A+ S++L V
Sbjct: 367 LRILGVVKSDEGFYQCVAENEAGNAQSSAQLIVP 400
>3v2a_R Vascular endothelial growth factor receptor 2; IG-homology domain,
vegfr-2, growth factor receptor, VEGF LI
hormone-signaling protein complex, angiogenesis; 3.20A
{Homo sapiens} PDB: 3v6b_R
Length = 772
Score = 156 bits (395), Expect = 2e-43
Identities = 50/333 (15%), Positives = 90/333 (27%), Gaps = 56/333 (16%)
Query: 2 PPILTYSFIEQTLQPGPAVSLKCIASGNPTPDIGWTLDGFELPTN-----NRFVIGQFVS 56
++ L G + L C A I + + NR + Q S
Sbjct: 224 YDVVLSPSHGIELSVGEKLVLNCTARTELNVGIDFNWEYPSSKHQHKKLVNRDLKTQSGS 283
Query: 57 GHGDVISHVNISHVTVEDGGEYACVAENRAG----TCEITPYDSG--------------- 97
+S + I VT D G Y C A + + + ++
Sbjct: 284 EMKKFLSTLTIDGVTRSDQGLYTCAASSGLMTKKNSTFVRVHEKPFVAFGSGMESLVEAT 343
Query: 98 ---------------PYLIAWFKDGRQIPGR---TSSTSLVINPVGREDRGIYQCIARRS 139
P I W+K+G + + L I V D G Y I
Sbjct: 344 VGERVRIPAKYLGYPPPEIKWYKNGIPLESNHTIKAGHVLTIMEVSERDTGNYTVILTNP 403
Query: 140 DGDVAQ-GSAELQLGGLPYVR----LIPKVTAIDGEGLSIKCPVAGYPI-EEVHWEKVPP 193
Q L + P + + P + G ++ C V P +HW
Sbjct: 404 ISKEKQSHVVSLVVYVPPQIGEKSLISPVDSYQYGTTQTLTCTVYAIPPPHHIHWYWQLE 463
Query: 194 KIESFAFPFDGLPEGARTRVICGVTHGDPPLTIRWLKDGKPLSPRFPVNVSDLDSFSSLL 253
+ + E ++ + + ++ + G + ++
Sbjct: 464 EECA--------NEPSQAVSVTNPYPCEEWRSVEDFQGGNKIEVNKNQFALIEGKNKTVS 515
Query: 254 SINSVSAAHSGEYTCVASNTAAQARYSSKLQVK 286
++ +A S Y C A N + V
Sbjct: 516 TLVIQAANVSALYKCEAVNKVGRGERVISFHVT 548
Score = 122 bits (307), Expect = 1e-31
Identities = 51/341 (14%), Positives = 88/341 (25%), Gaps = 100/341 (29%)
Query: 1 TPPILTYSFIEQTLQPGPAVSLKCIASGNPTPDIGWTLDGFELPTNNRFVIGQFVSGHGD 60
P L+ T++ + + C G D W + + R + + G
Sbjct: 30 DLPRLSIQKDILTIKANTTLQITC--RGQRDLD--WLWPNNQSGSEQRVEVTECSDGLF- 84
Query: 61 VISHVNISHVTVEDGGEYACVAENRAG--------------------------------- 87
+ I V D G Y C
Sbjct: 85 -CKTLTIPKVIGNDTGAYKCFYRETDLASVIYVYVQDYRSPFIASVSDQHGVVYITENKN 143
Query: 88 -----TCEITPYDSGPYLIAWFKDGRQIPGRT-----SSTSLVINPVGREDRGIYQCIAR 137
C + + L A + + R +P S I G+ C A+
Sbjct: 144 KTVVIPCLGSISNLNVSLCARYPEKRFVPDGNRISWDSKKGFTIPSYMISYAGMVFCEAK 203
Query: 138 RSDGDVAQGSAELQLG---GLPYVRLIPK--VTAIDGEGLSIKCPVAGYPIEEVHWEKVP 192
+D Q + + + V L P + GE L + C + +
Sbjct: 204 INDE-SYQSIMYIVVVVGYRIYDVVLSPSHGIELSVGEKLVLNCTARTELNVGIDF---- 258
Query: 193 PKIESFAFPFDGLPEGARTRVICGVTHGDPPLTIRWLKDGKPLSPRFPVN-------VSD 245
W + VN S+
Sbjct: 259 ----------------------------------NWEYPSSKHQHKKLVNRDLKTQSGSE 284
Query: 246 LDSFSSLLSINSVSAAHSGEYTCVASNTAAQARYSSKLQVK 286
+ F S L+I+ V+ + G YTC AS+ + S+ ++V
Sbjct: 285 MKKFLSTLTIDGVTRSDQGLYTCAASSGLMTKKNSTFVRVH 325
Score = 112 bits (281), Expect = 5e-28
Identities = 57/381 (14%), Positives = 87/381 (22%), Gaps = 142/381 (37%)
Query: 2 PPILTYSFIE--QTLQPGPAVSLKCIASGNPTPD-IGWTLDGFELPTNNRFVI------- 51
P I S I + Q G +L C P P I W E N
Sbjct: 421 PQIGEKSLISPVDSYQYGTTQTLTCTVYAIPPPHHIHWYWQLEEECANEPSQAVSVTNPY 480
Query: 52 ---------------------GQFVSGHGDVISHVNISHVTVEDGGEYACVAENRAG--- 87
QF G + + Y C A N+ G
Sbjct: 481 PCEEWRSVEDFQGGNKIEVNKNQFALIEGKNKTVSTLVIQAANVSALYKCEAVNKVGRGE 540
Query: 88 -----------------------------TCEITPYDSGPYLIAWFKDGRQI-------- 110
C + W+K G Q
Sbjct: 541 RVISFHVTRGPEITLQPDMQPTEQESVSLWCTADRST--FENLTWYKLGPQPLPIHVGEL 598
Query: 111 --------------------PGRTSSTSLVINPVGREDRGIYQCIARRSDGDVAQGSAEL 150
+ + +D+G Y C+A+ +
Sbjct: 599 PTPVCKNLDTLWKLNATMFSNSTNDILIMELKNASLQDQGDYVCLAQDRKTK-KRHCVVR 657
Query: 151 QL----GGLPYVRLIPK-VTAIDGEGLSIKCPVAGYPIEEVHWEKVPPKIESFAFPFDGL 205
QL P + + T GE + + C +
Sbjct: 658 QLTVLERVAPTITGNLENQTTSIGESIEVSCTAS-------------------------- 691
Query: 206 PEGARTRVICGVTHGDPPLTIRWLKDGKPLSPRFPVNVSDLDSFSSLLSINSVSAAHSGE 265
G+PP I W KD + L + + D + L+I V G
Sbjct: 692 --------------GNPPPQIMWFKDNETLVEDSGIVLKD---GNRNLTIRRVRKEDEGL 734
Query: 266 YTCVASNTAAQARYSSKLQVK 286
YTC A + A+ + ++
Sbjct: 735 YTCQACSVLGCAKVEAFFIIE 755
Score = 76.7 bits (188), Expect = 6e-16
Identities = 33/260 (12%), Positives = 59/260 (22%), Gaps = 82/260 (31%)
Query: 67 ISHVTVEDGGEYACVAENRAGTCEITPYDSGPYL------------------------IA 102
+ + + CV A + P L +
Sbjct: 1 MQSKVLLAVALWLCVETRAASVGLPSVSLDLPRLSIQKDILTIKANTTLQITCRGQRDLD 60
Query: 103 WFKDGRQIP-----------GRTSSTSLVINPVGREDRGIYQCIARRSDGDVA-----QG 146
W Q +L I V D G Y+C R +D Q
Sbjct: 61 WLWPNNQSGSEQRVEVTECSDGLFCKTLTIPKVIGNDTGAYKCFYRETDLASVIYVYVQD 120
Query: 147 SAELQLGGLPYVRLIPKVTAIDGEGLSIKCPVAGYPIEEVHWEKVPPKIESFAFPFDGLP 206
+ + + +T + + I C + + + P
Sbjct: 121 YRSPFIASVSDQHGVVYITENKNKTVVIPCLGSISNLNVSLCARYP-------------- 166
Query: 207 EGARTRVICGVTHGDPPLTIRWLKDGKPLSPRFPVNVSDLDSFSSLLSINSVSAAHSGEY 266
R++ DG +S DS +I S +++G
Sbjct: 167 ------------------EKRFVPDGNRIS---------WDS-KKGFTIPSYMISYAGMV 198
Query: 267 TCVASNTAAQARYSSKLQVK 286
C A + + V
Sbjct: 199 FCEAKINDESYQSIMYIVVV 218
Score = 74.4 bits (182), Expect = 3e-15
Identities = 27/90 (30%), Positives = 39/90 (43%), Gaps = 7/90 (7%)
Query: 1 TPPILTYSFIEQTLQPGPAVSLKCIASGNPTPDIGWTLDGFELPTNNRFVIGQFVSGHGD 60
P +T + QT G ++ + C ASGNP P I W D L ++ V+ D
Sbjct: 665 VAPTITGNLENQTTSIGESIEVSCTASGNPPPQIMWFKDNETLVEDSGIVL-------KD 717
Query: 61 VISHVNISHVTVEDGGEYACVAENRAGTCE 90
++ I V ED G Y C A + G +
Sbjct: 718 GNRNLTIRRVRKEDEGLYTCQACSVLGCAK 747
>1e07_A Carcinoembryonic antigen; glycoprotein, CEA, tumour marker,
immunoglobulin-fold; NMR {Homo sapiens} PDB: 2dks_A
Length = 642
Score = 151 bits (383), Expect = 5e-42
Identities = 49/325 (15%), Positives = 89/325 (27%), Gaps = 106/325 (32%)
Query: 2 PPILTYSFIEQTLQPGPAVSLKCIASGNPTPDIGWTLDGFELPTNNRFVIGQFVSGHGDV 61
P T S + + + G ++L C A+ NP W ++G + I
Sbjct: 203 PDAPTISPLNTSYRSGENLNLSCHAASNPPAQYSWFVNGTFQQSTQELFI---------- 252
Query: 62 ISHVNISHVTVEDGGEYACVAENRAGTCEIT----------------------------- 92
++TV + G Y C A N T
Sbjct: 253 ------PNITVNNSGSYTCQAHNSDTGLNRTTVTTITVYAEPPKPFITSNNSNPVEDEDA 306
Query: 93 -----PYDSGPYLIAWFKDGRQIPG------RTSSTSLVINPVGREDRGIYQCIARRSDG 141
+ W+ + + +P + +L + V R D G Y+C +
Sbjct: 307 VALTCEPEIQNTTYLWWVNNQSLPVSPRLQLSNDNRTLTLLSVTRNDVGPYECGIQNELS 366
Query: 142 DVAQGSAELQLGGLPYVRLIPKVTAIDGEGLSIKCPVAGYPIEEVHWEKVPPKIESFAFP 201
L + P + +
Sbjct: 367 VDHSDPVILNV-------------------------------------LYGPDDPTISPS 389
Query: 202 FDGLPEGARTRVICGVTHGDPPLTIRWLKDGKPLSPRFPVNVSDLDSFSSLLSINSVSAA 261
+ G + C +PP WL DG + L I++++
Sbjct: 390 YTYYRPGVNLSLSCHAA-SNPPAQYSWLIDGNIQQH------------TQELFISNITEK 436
Query: 262 HSGEYTCVASNTAAQARYSSKLQVK 286
+SG YTC A+N+A+ ++ +
Sbjct: 437 NSGLYTCQANNSASGHSRTTVKTIT 461
Score = 150 bits (381), Expect = 9e-42
Identities = 53/325 (16%), Positives = 83/325 (25%), Gaps = 106/325 (32%)
Query: 2 PPILTYSFIEQTLQPGPAVSLKCIASGNPTPDIGWTLDGFELPTNNRFVIGQFVSGHGDV 61
P T S +PG +SL C A+ NP W +DG
Sbjct: 381 PDDPTISPSYTYYRPGVNLSLSCHAASNPPAQYSWLIDGNIQQHT--------------- 425
Query: 62 ISHVNISHVTVEDGGEYACVAENRAGTCEITPY--------------------------- 94
+ IS++T ++ G Y C A N A T
Sbjct: 426 -QELFISNITEKNSGLYTCQANNSASGHSRTTVKTITVSAELPKPSISSNNSKPVEDKDA 484
Query: 95 -------DSGPYLIAWFKDGRQIPGRTSST------SLVINPVGREDRGIYQCIARRSDG 141
++ W+ +G+ +P +L + V R D Y C + S
Sbjct: 485 VAFTCEPEAQNTTYLWWVNGQSLPVSPRLQLSNGNRTLTLFNVTRNDARAYVCGIQNSVS 544
Query: 142 DVAQGSAELQLGGLPYVRLIPKVTAIDGEGLSIKCPVAGYPIEEVHWEKVPPKIESFAFP 201
L + P + P
Sbjct: 545 ANRSDPVTLDV-------------------------------------LYGPDTPIISPP 567
Query: 202 FDGLPEGARTRVICGVTHGDPPLTIRWLKDGKPLSPRFPVNVSDLDSFSSLLSINSVSAA 261
GA + C +P W +G P + +L I ++
Sbjct: 568 DSSYLSGANLNLSCHSA-SNPSPQYSWRINGIPQ------------QHTQVLFIAKITPN 614
Query: 262 HSGEYTCVASNTAAQARYSSKLQVK 286
++G Y C SN A S +
Sbjct: 615 NNGTYACFVSNLATGRNNSIVKSIT 639
Score = 124 bits (312), Expect = 3e-32
Identities = 45/321 (14%), Positives = 81/321 (25%), Gaps = 98/321 (30%)
Query: 1 TPPILTYSFIEQTLQPGPAVSLKCIASGNPTPDIGWTLDGFELPTNNRFVIGQFVSGHGD 60
P S + ++ AV+ C W ++ LP + R Q +G+
Sbjct: 110 LPKPSISSNNSKPVEDKDAVAFTCEPETQD-ATYLWWVNNQSLPVSPRL---QLSNGNRT 165
Query: 61 VISHVNISHVTVEDGGEYACVAENRAGT-------------------------------- 88
+ + +VT D Y C +N
Sbjct: 166 LT----LFNVTRNDTASYKCETQNPVSARRSDSVILNVLYGPDAPTISPLNTSYRSGENL 221
Query: 89 ---CEITPYDSGPYLIAWFKDGRQIPGRTSSTSLVINPVGREDRGIYQCIARRSDGDVAQ 145
C P +WF +G S+ L I + + G Y C A SD
Sbjct: 222 NLSCHAASNP--PAQYSWFVNGTFQQ---STQELFIPNITVNNSGSYTCQAHNSDTG-LN 275
Query: 146 GSAELQL-----GGLPYVRLIPKVTAIDGEGLSIKCPVAGYPIEEVHWEKVPPKIESFAF 200
+ + P++ D + +++ C
Sbjct: 276 RTTVTTITVYAEPPKPFITSNNSNPVEDEDAVALTCEPEI-------------------- 315
Query: 201 PFDGLPEGARTRVICGVTHGDPPLTIRWLKDGKPLSPRFPVNVSDLDSFSSLLSINSVSA 260
T W + + L + +S + + L++ SV+
Sbjct: 316 ---------------------QNTTYLWWVNNQSLPVSPRLQLS---NDNRTLTLLSVTR 351
Query: 261 AHSGEYTCVASNTAAQARYSS 281
G Y C N +
Sbjct: 352 NDVGPYECGIQNELSVDHSDP 372
Score = 122 bits (308), Expect = 1e-31
Identities = 47/319 (14%), Positives = 83/319 (26%), Gaps = 85/319 (26%)
Query: 2 PPILTYSFIEQTLQPGPAVSLKCIASGNPTPDIGWTLDGFELPTNNRFVIGQFVSGHGDV 61
P S ++ AV+L C T + W ++ LP + R +
Sbjct: 289 PKPFITSNNSNPVEDEDAVALTCEPEIQNTTYL-WWVNNQSLPVSPRLQLSNDNR----- 342
Query: 62 ISHVNISHVTVEDGGEYACVAENRAGTCEITPY----DSGPYL----------------- 100
+ + VT D G Y C +N P GP
Sbjct: 343 --TLTLLSVTRNDVGPYECGIQNELSVDHSDPVILNVLYGPDDPTISPSYTYYRPGVNLS 400
Query: 101 ------------IAWFKDGRQIPGRTSSTSLVINPVGREDRGIYQCIARRSDGDVAQGSA 148
+W DG + L I+ + ++ G+Y C A S +
Sbjct: 401 LSCHAASNPPAQYSWLIDGNIQQ---HTQELFISNITEKNSGLYTCQANNSASGH-SRTT 456
Query: 149 ELQLGGLPYVRLIPKVTAIDGEGLSIKCPVAGYPIEEVHWEKVPPKIESFAFPFDGLPEG 208
+ PK + + +
Sbjct: 457 VKT----------------------------------ITVSAELPKPSISSNNSKPVEDK 482
Query: 209 ARTRVICGVTHGDPPLTIRWLKDGKPLSPRFPVNVSDLDSFSSLLSINSVSAAHSGEYTC 268
C T W +G+ L + +S+ + L++ +V+ + Y C
Sbjct: 483 DAVAFTCEP--EAQNTTYLWWVNGQSLPVSPRLQLSNGN---RTLTLFNVTRNDARAYVC 537
Query: 269 VASNTAAQARYSS-KLQVK 286
N+ + R L V
Sbjct: 538 GIQNSVSANRSDPVTLDVL 556
Score = 118 bits (298), Expect = 2e-30
Identities = 44/327 (13%), Positives = 74/327 (22%), Gaps = 110/327 (33%)
Query: 15 QPGPAVSLKCIASGNPTPDIGWTLDGFELPT---------NNRFVIGQFVSGHGDVISHV 65
G V L W + G SG + +
Sbjct: 12 AEGKEVLLLVHNLPQHLFGYSWYKGERVDGNRQIIGYVIGTQQATPGPAYSGREIIYPNA 71
Query: 66 N--ISHVTVEDGGEYACVAENRAG------------------------------------ 87
+ I ++ D G Y
Sbjct: 72 SLLIQNIIQNDTGFYTLHVIKSDLVNEEATGQFRVYPELPKPSISSNNSKPVEDKDAVAF 131
Query: 88 TCEITPYDSGPYLIAWFKDGRQIPG------RTSSTSLVINPVGREDRGIYQCIARRSDG 141
TCE + W+ + + +P + +L + V R D Y+C +
Sbjct: 132 TCEPE---TQDATYLWWVNNQSLPVSPRLQLSNGNRTLTLFNVTRNDTASYKCETQNPVS 188
Query: 142 DVAQGSAELQLGGLPYVRLIPK--VTAIDGEGLSIKCPVAGYPIEEVHWEKVPPKIESFA 199
S L + P I + GE L++ C A
Sbjct: 189 ARRSDSVILNVLYGPDAPTISPLNTSYRSGENLNLSCHAASN------------------ 230
Query: 200 FPFDGLPEGARTRVICGVTHGDPPLTIRWLKDGKPLSPRFPVNVSDLDSFSSLLSINSVS 259
PP W +G + L I +++
Sbjct: 231 ----------------------PPAQYSWFVNGTFQQS------------TQELFIPNIT 256
Query: 260 AAHSGEYTCVASNTAAQARYSSKLQVK 286
+SG YTC A N+ ++ +
Sbjct: 257 VNNSGSYTCQAHNSDTGLNRTTVTTIT 283
Score = 44.6 bits (105), Expect = 2e-05
Identities = 11/118 (9%), Positives = 31/118 (26%), Gaps = 25/118 (21%)
Query: 164 VTAIDGEGLSIKCPVAGYPIEEVHWEKVPPKIESFAFPFDGLPEGARTRVICGVTHGDPP 223
+G+ + + + W K G
Sbjct: 9 FNVAEGKEVLLLVHNLPQHLFGYSWYK-------------------------GERVDGNR 43
Query: 224 LTIRWLKDGKPLSPRFPVNVSDLDSFSSLLSINSVSAAHSGEYTCVASNTAAQARYSS 281
I ++ + +P + ++ ++ L I ++ +G YT + ++
Sbjct: 44 QIIGYVIGTQQATPGPAYSGREIIYPNASLLIQNIIQNDTGFYTLHVIKSDLVNEEAT 101
>2rik_A Titin; I-SET IG fold, poly-IG linear array, structural protein;
1.60A {Oryctolagus cuniculus} PDB: 2rjm_A
Length = 284
Score = 144 bits (364), Expect = 1e-41
Identities = 63/328 (19%), Positives = 101/328 (30%), Gaps = 92/328 (28%)
Query: 2 PPILTYSFIEQTLQPGPAVSLKCIASGNPTPDIGWTLDGFELPTNNRFVIGQFVSGHGDV 61
PP + L G + + KC +G I W D E+ + + +
Sbjct: 5 PPFFDLKPVSVDLALGESGTFKCHVTGTAPIKITWAKDNREIRPGGNYKMTLVENT---- 60
Query: 62 ISHVNISHVTVEDGGEYACVAENRAGTCE--------------ITPYDSGPYL------- 100
+ + + VT D G+Y C A N AG S
Sbjct: 61 -ATLTVLKVTKGDAGQYTCYASNVAGKDSCSAQLGVQEPPRFIKKLEPSRIVKQDEHTRY 119
Query: 101 -----------IAWFKDGRQIP--------GRTSSTSLVINPVGREDRGIYQCIARRSDG 141
+ W+KD +I S L + + ED G Y C A + G
Sbjct: 120 ECKIGGSPEIKVLWYKDETEIQESSKFRMSFVESVAVLEMYNLSVEDSGDYTCEAHNAAG 179
Query: 142 DVAQGSAELQLGGLPYVRLIPK-VTAIDGEGLSIKCPVAGYPIEEVHWEKVPPKIESFAF 200
A S L++ P R P V + G + ++C +
Sbjct: 180 -SASSSTSLKVKEPPVFRKKPHPVETLKGADVHLECEL---------------------- 216
Query: 201 PFDGLPEGARTRVICGVTHGDPPLTIRWLKDGKPL--SPRFPVNVSDLDSFSSLLSINSV 258
G PP + W KD + L ++ + ++F + + I +V
Sbjct: 217 ------------------QGTPPFQVSWHKDKRELRSGKKYKIMS---ENFLTSIHILNV 255
Query: 259 SAAHSGEYTCVASNTAAQARYSSKLQVK 286
+A GEY C ASN + +K
Sbjct: 256 DSADIGEYQCKASNDVGSYTCVGSITLK 283
Score = 84.0 bits (208), Expect = 4e-19
Identities = 29/96 (30%), Positives = 46/96 (47%), Gaps = 3/96 (3%)
Query: 191 VPPKIESFAFPFDGLPEGARTRVICGVTHGDPPLTIRWLKDGKPLSPRFPVNVSDLDSFS 250
PP + D L G C VT G P+ I W KD + + P ++ L +
Sbjct: 4 APPFFDLKPVSVD-LALGESGTFKCHVT-GTAPIKITWAKDNREIRPGGNYKMT-LVENT 60
Query: 251 SLLSINSVSAAHSGEYTCVASNTAAQARYSSKLQVK 286
+ L++ V+ +G+YTC ASN A + S++L V+
Sbjct: 61 ATLTVLKVTKGDAGQYTCYASNVAGKDSCSAQLGVQ 96
>2yd9_A Receptor-type tyrosine-protein phosphatase S; hydrolase; HET: NAG
B3P; 2.60A {Homo sapiens}
Length = 304
Score = 142 bits (359), Expect = 8e-41
Identities = 65/333 (19%), Positives = 99/333 (29%), Gaps = 96/333 (28%)
Query: 2 PPILTYSFIEQTLQPGPAVSLKCIASGNPTPDIGWTLDGFELPTNNRFVIGQFVSGHGDV 61
PP +Q G S C A+G+P P + W G ++ + I +F G V
Sbjct: 6 PPRFIKEPKDQIGVSGGVASFVCQATGDPKPRVTWNKKGKKVNSQRFETI-EFDESAGAV 64
Query: 62 ISHVNISHV-TVEDGGEYACVAENRAGT----------CEITPYDSGPYL---------- 100
+ I + T D Y CVA+N G E P +
Sbjct: 65 L---RIQPLRTPRDENVYECVAQNSVGEITVHAKLTVLREDQLPSGFPNIDMGPQLKVVE 121
Query: 101 ------------------IAWFKDGRQIPGRTS--------STSLVINPVGREDRGIYQC 134
I WFKD + S S +L I D+G Y+C
Sbjct: 122 RTRTATMLCAASGNPDPEITWFKDFLPVDPSASNGRIKQLRSGALQIESSEETDQGKYEC 181
Query: 135 IARRSDGDVAQGSAELQLGGLPYVRLIPKVTAIDGEGLSIKCPVAGYPIEEVHWEKVPPK 194
+A S G A L V + V P+
Sbjct: 182 VATNSAGVRYSSPANL----------------------------------YVRVQNVAPR 207
Query: 195 IESFAFPFD-GLPEGARTRVICGVTHGDPPLTIRWLKDGKPLSPRFPVNVSDLDSFSSLL 253
P + G + C G P ++W++ + L+P + V
Sbjct: 208 FSI--LPMSHEIMPGGNVNITCVAV-GSPMPYVKWMQGAEDLTPEDDMPVGR-------N 257
Query: 254 SINSVSAAHSGEYTCVASNTAAQARYSSKLQVK 286
+ S YTCVA ++ +++ VK
Sbjct: 258 VLELTDVKDSANYTCVAMSSLGVIEAVAQITVK 290
Score = 88.3 bits (219), Expect = 2e-20
Identities = 34/194 (17%), Positives = 57/194 (29%), Gaps = 43/194 (22%)
Query: 1 TPPILTYSFIEQTLQPGPAVSLKCIASGNPTPDIGWTLDGFELPTNNRFVIGQFVSGHGD 60
P + + ++ ++ C ASGNP P+I W D + + G
Sbjct: 107 GFPNIDMGPQLKVVERTRTATMLCAASGNPDPEITWFKDFLPVDPSASNGR-IKQLRSGA 165
Query: 61 VISHVNISHVTVEDGGEYACVAENRAGTC-------EITPYDSGPYL------------- 100
+ I D G+Y CVA N AG + + P
Sbjct: 166 LQ----IESSEETDQGKYECVATNSAGVRYSSPANLYVRVQNVAPRFSILPMSHEIMPGG 221
Query: 101 ---------------IAWFKDGRQIP--GRTSSTSLVINPVGREDRGIYQCIARRSDGDV 143
+ W + + V+ +D Y C+A S V
Sbjct: 222 NVNITCVAVGSPMPYVKWMQGAEDLTPEDDMPVGRNVLELTDVKDSANYTCVA-MSSLGV 280
Query: 144 AQGSAELQLGGLPY 157
+ A++ + LP
Sbjct: 281 IEAVAQITVKSLPK 294
Score = 67.2 bits (164), Expect = 5e-13
Identities = 25/99 (25%), Positives = 41/99 (41%), Gaps = 5/99 (5%)
Query: 190 KVPPKIESFAFPFDG-LPEGARTRVICGVTHGDPPLTIRWLKDGKPLSPRFPVNVSDLDS 248
+ PP+ P D G +C T GDP + W K GK ++ + + +S
Sbjct: 4 EEPPRFIKE--PKDQIGVSGGVASFVCQAT-GDPKPRVTWNKKGKKVNSQRFETIEFDES 60
Query: 249 FSSLLSINSV-SAAHSGEYTCVASNTAAQARYSSKLQVK 286
++L I + + Y CVA N+ + +KL V
Sbjct: 61 AGAVLRIQPLRTPRDENVYECVAQNSVGEITVHAKLTVL 99
>2wim_A N-CAM 2, NCAM2, neural cell adhesion molecule 2; cell membrane,
transmembrane, immunoglobulin; HET: NDG NAG; 3.00A {Homo
sapiens}
Length = 291
Score = 141 bits (357), Expect = 1e-40
Identities = 56/327 (17%), Positives = 99/327 (30%), Gaps = 89/327 (27%)
Query: 2 PPILTYSFIEQTLQPGPAVSLKCIASGNPTPDIGWTLDGFELPTNNRFVIGQFVSGHGDV 61
+T S + L G + C A G P + G ++ + R V+ V
Sbjct: 4 LLQVTISLSKVELSVGESKFFTCTAIGEPESIDWYNPQGEKIISTQRVVVQ-----KEGV 58
Query: 62 ISHVNISHVTVEDGGEYACVAENRAGTCE---------------ITPYD----------- 95
S + I + +ED G Y C A + G +
Sbjct: 59 RSRLTIYNANIEDAGIYRCQATDAKGQTQEATVVLEIYQKLTFREVVSPQEFKQGEDAEV 118
Query: 96 ----SG--PYLIAWFKDGRQIPGR-------TSSTSLVINPVGREDRGIYQCIARRSDGD 142
S ++W ++ ++ +L I + + D GIY+C R
Sbjct: 119 VCRVSSSPAPAVSWLYHNEEVTTISDNRFAMLANNNLQILNINKSDEGIYRCEGRVEARG 178
Query: 143 VAQGSAELQLGGLPYVRLIPKVTAIDGEGLSIKCPVAGYPIEEVHWEKVPPKIESFAFPF 202
+ V+ VPP I F
Sbjct: 179 EIDFRDIIV---------------------------------IVN---VPPAISMPQKSF 202
Query: 203 D-GLPEGARTRVICGVTHGDPPLTIRWLKDGKPLSP--RFPVNVSDLDSFSSLLSINSVS 259
+ G C + G P I W ++GK + ++ + S+ + L++ ++
Sbjct: 203 NATAERGEEMTFSCRAS-GSPEPAISWFRNGKLIEENEKYILKGSN-----TELTVRNII 256
Query: 260 AAHSGEYTCVASNTAAQARYSSKLQVK 286
+ G Y C A+N A + + LQV
Sbjct: 257 NSDGGPYVCRATNKAGEDEKQAFLQVF 283
Score = 89.1 bits (221), Expect = 6e-21
Identities = 35/199 (17%), Positives = 59/199 (29%), Gaps = 48/199 (24%)
Query: 2 PPILTYSFIEQTLQPGPAVSLKCIASGNPTPDIGWTLDGFELPTNNRFVIGQFVSGHGDV 61
Q + G + C S +P P + W E+ T + + + ++
Sbjct: 98 KLTFREVVSPQEFKQGEDAEVVCRVSSSPAPAVSWLYHNEEVTTISDNRF--AMLANNNL 155
Query: 62 ISHVNISHVTVEDGGEYACVAENRAG----------TCEITPYDSGPYL----------- 100
I ++ D G Y C A + P S P
Sbjct: 156 Q----ILNINKSDEGIYRCEGRVEARGEIDFRDIIVIVNVPPAISMPQKSFNATAERGEE 211
Query: 101 --------------IAWFKDGRQIPG------RTSSTSLVINPVGREDRGIYQCIARRSD 140
I+WF++G+ I + S+T L + + D G Y C A
Sbjct: 212 MTFSCRASGSPEPAISWFRNGKLIEENEKYILKGSNTELTVRNIINSDGGPYVCRATNKA 271
Query: 141 GDVAQGSAELQLGGLPYVR 159
G + A LQ+ +
Sbjct: 272 G-EDEKQAFLQVFVQHHHH 289
>2ec8_A MAST/stem cell growth factor receptor; glycoprotein, receptor
tyrosine kinase, growth factor cytoki dimerization,
transferase; HET: NAG; 3.00A {Homo sapiens} PDB: 2e9w_A*
Length = 524
Score = 145 bits (366), Expect = 4e-40
Identities = 49/337 (14%), Positives = 86/337 (25%), Gaps = 88/337 (26%)
Query: 1 TPPILTYSFIEQTLQPGPAVSLKCIASGNPTP-DIGWTLDGFELPTNNRFVIGQFVSGHG 59
P+++ S L+ G ++ C + W + + ++ +
Sbjct: 210 AVPVVSVSKASYLLREGEEFTVTCTIKDVSSSVYSTWKRENSQTKLQEKYNSWHHGDFNY 269
Query: 60 DVISHVNISHVTVEDGGEYACVAENRAG-------------------------------- 87
+ + + IS V D G + C A N G
Sbjct: 270 ERQATLTISSARVNDSGVFMCYANNTFGSANVTTTLEVVDKGFINIFPMINTTVFVNDGE 329
Query: 88 ----TCEITPYDSGPYLIAWFKDGRQIPGR-------------TSSTSLVINPVGREDRG 130
E + P W R + + L + + + G
Sbjct: 330 NVDLIVEYEAFPK-PEHQQWIYMNRTFTDKWEDYPKSENESNIRYVSELHLTRLKGTEGG 388
Query: 131 IYQCIARRSDGDVAQGSAELQLGGLPYVRLIPKV-TAIDGEGLSIKCPVAGYPIEEVHWE 189
Y + SD A + + YV P++ T ++C AG+P + W
Sbjct: 389 TYTFLVSNSDV-NAAIAFNV------YVNTKPEILTYDRLVNGMLQCVAAGFPEPTIDWY 441
Query: 190 KVPPKIESFAFPFDGLPEGARTRVICGVTHGDPPLTIRWLKDGKPLSPRFPVNVSDLDSF 249
P + LP +T G G
Sbjct: 442 FCPGTEQR--CSASVLPVDVQTLNSSGPPFG---------------------------KL 472
Query: 250 SSLLSINSVSAAHSGEYTCVASNTAAQARYSSKLQVK 286
SI+S + H+G C A N + K
Sbjct: 473 VVQSSIDSSAFKHNGTVECKAYNDVGKTSAYFNFAFK 509
Score = 128 bits (322), Expect = 5e-34
Identities = 45/345 (13%), Positives = 85/345 (24%), Gaps = 108/345 (31%)
Query: 2 PPILTYSFIEQTLQPGPAVSLKCIASGNPTPDIGWT-LDGFELPTNNRFVIGQFVSGHGD 60
P L + ++C + + G LP + RF+ G
Sbjct: 114 PAKLFLVDRSLYGKEDNDTLVRCPLTDPEVTNYSLKGCQGKPLPKDLRFIPD---PKAGI 170
Query: 61 VISHVNISHVTVEDGGEYACVAENRAG--------------------------------- 87
+I V + C +
Sbjct: 171 MIKSVKRA----YHRLCLHCSVDQEGKSVLSEKFILKVRPAFKAVPVVSVSKASYLLREG 226
Query: 88 -----TCEITPYDSGPYLIAWFKDGRQIPGRTSSTS-------------LVINPVGREDR 129
TC I S W ++ Q + S L I+ D
Sbjct: 227 EEFTVTCTIKDVSS-SVYSTWKRENSQTKLQEKYNSWHHGDFNYERQATLTISSARVNDS 285
Query: 130 GIYQCIARRSDGDVAQGSAELQLGGLPYVRLIPK----VTAIDGEGLSIKCPVAGYPIEE 185
G++ C A + G A + L++ ++ + P V DGE + + +P
Sbjct: 286 GVFMCYANNTFG-SANVTTTLEVVDKGFINIFPMINTTVFVNDGENVDLIVEYEAFP--- 341
Query: 186 VHWEKVPPKIESFAFPFDGLPEGARTRVICGVTHGDPPLTIRWLKDGKPLSPRFPVNVSD 245
P +W+ + + ++
Sbjct: 342 ------------------------------------KPEHQQWIYMNRTFTDKWEDYPKS 365
Query: 246 LD----SFSSLLSINSVSAAHSGEYTCVASNTAAQARYSSKLQVK 286
+ + S L + + G YT + SN+ A + + V
Sbjct: 366 ENESNIRYVSELHLTRLKGTEGGTYTFLVSNSDVNAAIAFNVYVN 410
Score = 126 bits (318), Expect = 2e-33
Identities = 45/328 (13%), Positives = 85/328 (25%), Gaps = 96/328 (29%)
Query: 1 TPPILTYSFIEQTLQPGPAVSLKCIASGNPTPDIGWTLDGFELPTNNRFVIGQFVSGHGD 60
+PP + + ++ G + L C G WT + + N+
Sbjct: 35 SPPSIHPGKSDLIVRVGDEIRLLCTDPGFVK----WTFEILDETNENKQ----------- 79
Query: 61 VISHVNISHVTVEDGGEYACVAENRAGT------------------------------CE 90
+ + G+Y C ++ C
Sbjct: 80 --NEWITEKAEATNTGKYTCTNKHGLSNSIYVFVRDPAKLFLVDRSLYGKEDNDTLVRCP 137
Query: 91 ITPYDSGPYLIAWFK--DGRQIPGRT------SSTSLVINPVGREDRGIYQCIARRSDGD 142
+T K G+ +P + ++ + R C +
Sbjct: 138 LT---DPEVTNYSLKGCQGKPLPKDLRFIPDPKAGIMIKSVKRAYHRLCLHCSVDQEGKS 194
Query: 143 VAQGSAELQLGGLPYVRLIPKVTAIDGEGLSIKCPVAGYPIEEVHWEKVPPKIESFAFPF 202
V S + L P + +P V+
Sbjct: 195 VL--SEKFILKVRPAFKAVPVVS------------------------VSKASYL------ 222
Query: 203 DGLPEGARTRVICGVTHGDPPLTIRWLKDGKPLSPRFPVNVSDLDSFS----SLLSINSV 258
L EG V C + + W ++ + N F+ + L+I+S
Sbjct: 223 --LREGEEFTVTCTIKDVSSSVYSTWKRENSQTKLQEKYNSWHHGDFNYERQATLTISSA 280
Query: 259 SAAHSGEYTCVASNTAAQARYSSKLQVK 286
SG + C A+NT A ++ L+V
Sbjct: 281 RVNDSGVFMCYANNTFGSANVTTTLEVV 308
Score = 78.6 bits (193), Expect = 1e-16
Identities = 26/208 (12%), Positives = 44/208 (21%), Gaps = 47/208 (22%)
Query: 1 TPPILTYSFIEQTLQPGPAVSLKCIASGNPTPD-IGWTLDGFELPTNNRFVIGQFVSGHG 59
I + G V L P P+ W +
Sbjct: 312 FINIFPMINTTVFVNDGENVDLIVEYEAFPKPEHQQWIYMNRTFTDKWEDYPKSENESNI 371
Query: 60 DVISHVNISHVTVEDGGEYACVAENRAGTC------------EITPYDSG---------- 97
+S ++++ + +GG Y + N EI YD
Sbjct: 372 RYVSELHLTRLKGTEGGTYTFLVSNSDVNAAIAFNVYVNTKPEILTYDRLVNGMLQCVAA 431
Query: 98 ---PYLIAWFKDG--------------------RQIPGRTSSTSLVINPVGREDRGIYQC 134
I W+ P I+ + G +C
Sbjct: 432 GFPEPTIDWYFCPGTEQRCSASVLPVDVQTLNSSGPPFGKLVVQSSIDSSAFKHNGTVEC 491
Query: 135 IARRSDGDVAQGSAELQLGGLPYVRLIP 162
A G + G ++ P
Sbjct: 492 KAYNDVGKTSA-YFNFAFKGNNKEQIHP 518
Score = 73.5 bits (180), Expect = 6e-15
Identities = 26/246 (10%), Positives = 56/246 (22%), Gaps = 79/246 (32%)
Query: 73 EDGGEYACV----AENRAGTCE------------ITPYDS---------------GPYLI 101
++ CV + G+ + I P S P +
Sbjct: 5 RGAWDFLCVLLLLLRVQTGSSQPSVSPGEPSPPSIHPGKSDLIVRVGDEIRLLCTDPGFV 64
Query: 102 AWFKDGRQIPGRTSSTSLVINPVGREDRGIYQCIARRSDGDVAQGSAELQLGGLPYVRLI 161
W + + + G Y C + + S + + + L+
Sbjct: 65 KWTFEILDETNENKQNEWITEKAEATNTGKYTCTNKHGLSN----SIYVFVRDPAKLFLV 120
Query: 162 PK-VTAIDGEGLSIKCPVAGYPIEEVHWEKVPPKIESFAFPFDGLPEGARTRVICGVTHG 220
+ + + ++CP+ + + G P R I
Sbjct: 121 DRSLYGKEDNDTLVRCPLTDPEVTNYSLKG-----------CQGKPLPKDLRFI------ 163
Query: 221 DPPLTIRWLKDGKPLSPRFPVNVSDLDSFSSLLSINSVSAAHSGEYTCVASNTAAQARYS 280
D + ++ + A H C ++ S
Sbjct: 164 -------------------------PDPKAGIMIKSVKRAYHRLCLHCSVDQ-EGKSVLS 197
Query: 281 SKLQVK 286
K +K
Sbjct: 198 EKFILK 203
Score = 50.1 bits (119), Expect = 4e-07
Identities = 16/159 (10%), Positives = 37/159 (23%), Gaps = 57/159 (35%)
Query: 125 GREDRGIYQCIAR---RSDGDVAQGSAELQLGGLPYVRLIPK-VTAIDGEGLSIKCPVAG 180
G + C+ R +Q S P + + G+ + + C G
Sbjct: 3 GARGAWDFLCVLLLLLRVQTGSSQPSVSPGEPSPPSIHPGKSDLIVRVGDEIRLLCTDPG 62
Query: 181 YPIEEVHWEKVPPKIESFAFPFDGLPEGARTRVICGVTHGDPPLTIRWLKDGKPLSPRFP 240
++W + +
Sbjct: 63 --------------------------------------------FVKWTFEILDETN--- 75
Query: 241 VNVSDLDSFSSLLSINSVSAAHSGEYTCVASNTAAQARY 279
++ + A ++G+YTC + + + Y
Sbjct: 76 ------ENKQNEWITEKAEATNTGKYTCTNKHGLSNSIY 108
>2y25_A Myomesin; structural protein, sarcomere, M-BAND,
immunoglobulin-like D; 3.50A {Homo sapiens}
Length = 317
Score = 138 bits (348), Expect = 4e-39
Identities = 55/333 (16%), Positives = 89/333 (26%), Gaps = 81/333 (24%)
Query: 8 SFIE---QTLQPGPAVSLKCIASG-NPTPDIGWTLDGFELPTNNRFVIGQFVSGHGDVIS 63
F+E + V LKC + I W D E+ + + +
Sbjct: 9 HFVEYLSWEVTGECNVLLKCKVANIKKETHIVWYKDEREISVDEKHDFKDGIC------- 61
Query: 64 HVNISHVTVEDGGEYACVAENRAGT----------------------------------- 88
+ I+ + +D G Y + ++ G
Sbjct: 62 TLLITEFSKKDAGIYEVILKDDRGKDKSRLKLVDEAFKELMMEVCKKIALSATDLKIQST 121
Query: 89 -------CEITPYDSGPYLIAWFKDGRQIP--------GRTSSTSLVINPVGREDRGIYQ 133
+T Y + W +G I L IN D+G Y
Sbjct: 122 AEGIQLYSFVTYYVEDL-KVNWSHNGSAIRYSDRVKTGVTGEQIWLQINEPTPNDKGKYV 180
Query: 134 CIARRSDGDVAQGSAELQLGGLPYVRLIPKVTAIDGEGLSIKCPVAGYPIEEVHWEKVPP 193
Q + +L + EK
Sbjct: 181 MELFDGKT-GHQKTVDLSGQAYDEAYAEFQRLKQAAIA-----------------EKNRA 222
Query: 194 KIESFAFPFDGLPEGARTRVICGVTHGDPPLTIRWLKDGKPLSPRFPVNVSDLDSFSSLL 253
++ + EG + C V GDPP + WLK+ K L+ N+ ++
Sbjct: 223 RVLGGLPDVVTIQEGKALNLTCNVW-GDPPPEVSWLKNEKALASDDHCNLKFEAGRTAYF 281
Query: 254 SINSVSAAHSGEYTCVASNTAAQARYSSKLQVK 286
+IN VS A SG+Y V N + V
Sbjct: 282 TINGVSTADSGKYGLVVKNKYGSETSDFTVSVF 314
Score = 83.0 bits (205), Expect = 2e-18
Identities = 20/91 (21%), Positives = 40/91 (43%), Gaps = 4/91 (4%)
Query: 2 PPILTYSFIEQTLQPGPAVSLKCIASGNPTPDIGWTLDGFELPTNNRFVIGQFVSGHGDV 61
+L T+Q G A++L C G+P P++ W + L +++ +
Sbjct: 222 ARVLGGLPDVVTIQEGKALNLTCNVWGDPPPEVSWLKNEKALASDDHCNL----KFEAGR 277
Query: 62 ISHVNISHVTVEDGGEYACVAENRAGTCEIT 92
++ I+ V+ D G+Y V +N+ G+
Sbjct: 278 TAYFTINGVSTADSGKYGLVVKNKYGSETSD 308
Score = 71.1 bits (174), Expect = 2e-14
Identities = 16/98 (16%), Positives = 28/98 (28%), Gaps = 5/98 (5%)
Query: 189 EKVPPKIESFAFPFDGLPEGARTRVICGVTHGDPPLTIRWLKDGKPLSPRFPVNVSDLDS 248
P + + + C V + I W KD + +S D
Sbjct: 4 PFTGPHFVEY--LSWEVTGECNVLLKCKVANIKKETHIVWYKDEREISVD---EKHDFKD 58
Query: 249 FSSLLSINSVSAAHSGEYTCVASNTAAQARYSSKLQVK 286
L I S +G Y + + + + KL +
Sbjct: 59 GICTLLITEFSKKDAGIYEVILKDDRGKDKSRLKLVDE 96
>3ejj_X Macrophage colony-stimulating factor 1 receptor; growth
factor-receptor complex, receptor tyrosine kinase, CY
4-helix bundle, ATP-binding; HET: NAG; 2.40A {Mus
musculus}
Length = 289
Score = 132 bits (334), Expect = 3e-37
Identities = 47/327 (14%), Positives = 88/327 (26%), Gaps = 90/327 (27%)
Query: 1 TPPILTYSFIEQTLQPGPAVSLKCIASGNPTPDIGWTLDGFELPTNNRFVIGQFVSGHGD 60
P++ S E ++PG V+L+C+++G+ W T +
Sbjct: 3 PAPVIEPSGPELVVEPGETVTLRCVSNGSVE----WDGPISPYWTLD----------PES 48
Query: 61 VISHVNISHVTVEDGGEYACVAENRAGT-------------------------------- 88
S + + T ++ G Y C
Sbjct: 49 PGSTLTTRNATFKNTGTYRCTELEDPMAGSTTIHLYVKDPAHSWNLLAQEVTVVEGQEAV 108
Query: 89 --CEITPYDSGPYLIAWFKDGRQIPGR------TSSTSLVINPVGREDRGIYQCIARRSD 140
C IT ++ ++G + R + +I D Y C +
Sbjct: 109 LPCLITDPALKD-SVSLMREGGRQVLRKTVYFFSPWRGFIIRKAKVLDSNTYVCKTMVNG 167
Query: 141 GDVAQGSAELQLGGLPYVRLIPKVTAIDGEGLSIKCPVAGYPIEEVHWEKVPPKIESFAF 200
+ L V + PP+I+
Sbjct: 168 RESTSTGIWL------KVNRVH---------------------------PEPPQIKLEPS 194
Query: 201 PFDGLPEGARTRVICGVTHGDPPLTIRWLKDGKPLSPRFPVNVS-DLDSFSSLLSINSVS 259
G +++C T+ + + + L + + LS+N+V
Sbjct: 195 KLV-RIRGEAAQIVCSATNAEVGFNVILKRGDTKLEIPLNSDFQDNYYKKVRALSLNAVD 253
Query: 260 AAHSGEYTCVASNTAAQARYSSKLQVK 286
+G Y+CVASN + QV
Sbjct: 254 FQDAGIYSCVASNDVGTRTATMNFQVV 280
>3qs9_E FL cytokine receptor; immunoglobulin-like domain, four-helical
bundle cytokine, hematopoietic cytokine-receptor
complex, cell surface, EXTR complex; 7.80A {Homo
sapiens}
Length = 527
Score = 136 bits (343), Expect = 6e-37
Identities = 40/324 (12%), Positives = 75/324 (23%), Gaps = 88/324 (27%)
Query: 2 PPILTYSFIEQTLQPGPAVSLKCIASGNPTPDIGWTLDGFELPTNNRFVIGQFVSGHGDV 61
Y + +++L+ + W L F +
Sbjct: 48 SSGTVYEAAAVEVDVSASITLQVLVDAPGNISCLWVFKHSSLNCQPHFDL------QNRG 101
Query: 62 ISHVNISHVTVEDGGEYACVAENRAGTCEITPY-------------------DSGPYL-- 100
+ + I +T GEY ++ A I ++ L
Sbjct: 102 VVSMVILKMTETQAGEYLLFIQSEATNYTILFTVSIRNTLLYTLRRPYFRKMENQDALVC 161
Query: 101 ---------IAWFKDGRQIP----GRTSSTSLVINPVGREDRGIYQCIARRSDGDVAQGS 147
+ W Q + + +C AR G
Sbjct: 162 ISESVPEPIVEWVLCDSQGESCKEESPAVVKKEEKVLHELFGTDIRCCARNELGRECTRL 221
Query: 148 AELQLGGLPYVRLIPKVTAIDGEGLSIKCPVAGYPIEEVHWEKVPPKIESFAFPFDGLPE 207
+ L P L P++ GE L I+C
Sbjct: 222 FTIDLNQTPQTTL-PQLFLKVGEPLWIRCKAVH--------------------------- 253
Query: 208 GARTRVICGVTHGDPPLTIRWLKDGKPLSPRFPVNVSDLDS-----FSSLLSINSVSAAH 262
+ + W + K L +S + ++SV+
Sbjct: 254 ------------VNHGFGLTWELENKALEEGNYFEMSTYSTNRTMIRILFAFVSSVARND 301
Query: 263 SGEYTCVASNTAAQARYSSKLQVK 286
+G YTC +S S+ + +
Sbjct: 302 TGYYTCSSSK---HPSQSALVTIV 322
Score = 130 bits (327), Expect = 1e-34
Identities = 46/315 (14%), Positives = 78/315 (24%), Gaps = 80/315 (25%)
Query: 11 EQTLQPGPAVSLKCIASG-NPTPDIGWTLDGFELPTNNRFVIGQFVSGHGDV-ISHVNIS 68
+ L+ G + ++C A N + W L+ L N F + + + + I +S
Sbjct: 236 QLFLKVGEPLWIRCKAVHVNHGFGLTWELENKALEEGNYFEMSTYSTNRTMIRILFAFVS 295
Query: 69 HVTVEDGGEYACVAENRAGT--------------------------------CEITPYDS 96
V D G Y C + Y
Sbjct: 296 SVARNDTGYYTCSSSKHPSQSALVTIVEKGFINATNSSEDYEIDQYEEFCFSVRFKAY-- 353
Query: 97 GPYL-IAWFKDGRQIPGR----TSSTSLVINPVGREDRGIYQCIARRSDGDVAQGSAELQ 151
P + W + P + S+ + G Y A D L
Sbjct: 354 -PQIRCTWTFSRKSFPCEQKGLDNGYSISKFCNHKHQPGEYIFHAENDDA-QFTKMFTLN 411
Query: 152 LGGLPYVRLIPKVTAIDGEGLSIKCPVAGYPIEEVHWEKVPPKIESFAFPFDGLPEGART 211
+R P+V A + C GYP+ W+K K
Sbjct: 412 ------IRRKPQVLA-EASASQASCFSDGYPLPSWTWKKCSDK----------------- 447
Query: 212 RVICGVTHGDPPLTIRWLKDGKPLSPRFPVNVSDLDSFSSLLSINSVSAAHSGEYTCVAS 271
+ ++ N + S ++N A C A
Sbjct: 448 -------------SPNCTEEITEGVWNRKANRKVFGQWVSSSTLNMSEAIKGFLVKCCAY 494
Query: 272 NTAAQARYSSKLQVK 286
N+ + + L
Sbjct: 495 NSLGTSCETILLNSP 509
Score = 128 bits (323), Expect = 4e-34
Identities = 37/316 (11%), Positives = 62/316 (19%), Gaps = 108/316 (34%)
Query: 20 VSLKCIASGNPTPDIGWTLDGFELPTNNRFVIGQFVSGHGDVISHVNISHVTVEDGGEYA 79
+L CI+ P P + W L + + + G +
Sbjct: 157 DALVCISESVPEPIVEWVLCDSQGESCKEESPAVVKKEEKVLHE---------LFGTDIR 207
Query: 80 CVAENRAG--------------------------------TCEITPYDSGPYLIAWFKDG 107
C A N G C+ + G + W +
Sbjct: 208 CCARNELGRECTRLFTIDLNQTPQTTLPQLFLKVGEPLWIRCKAVHVNHGFG-LTWELEN 266
Query: 108 RQIPGRT--------------SSTSLVINPVGREDRGIYQCIARRSDGDVAQGSAELQLG 153
+ + ++ V R D G Y C + + SA + +
Sbjct: 267 KALEEGNYFEMSTYSTNRTMIRILFAFVSSVARNDTGYYTCSSSKHPSQ----SALVTIV 322
Query: 154 GLPYVRLIPK---VTAIDGEGLSIKCPVAGYPIEEVHWEKVPPKIESFAFPFDGLPEGAR 210
++ E YP
Sbjct: 323 EKGFINATNSSEDYEIDQYEEFCFSVRFKAYP---------------------------- 354
Query: 211 TRVICGVTHGDPPLTIRWLKDGKPLSPRFPVNVSDLDSFSSLLSINSVSAAHSGEYTCVA 270
+ W K +S GEY A
Sbjct: 355 ------------QIRCTWTFSRKSFPCE-----QKGLDNGYSISKFCNHKHQPGEYIFHA 397
Query: 271 SNTAAQARYSSKLQVK 286
N AQ L ++
Sbjct: 398 ENDDAQFTKMFTLNIR 413
Score = 82.4 bits (203), Expect = 7e-18
Identities = 21/252 (8%), Positives = 44/252 (17%), Gaps = 80/252 (31%)
Query: 61 VISHVNISHVTVEDGGEYACVAENRAGT-CEITPY------------------------- 94
V+ + + +V Y V+E+ C + P
Sbjct: 13 VLINHKNNDSSVGKSSSYPMVSESPEDLGCALRPQSSGTVYEAAAVEVDVSASITLQVLV 72
Query: 95 -DSGPYLIAWFKDGRQIPGRTS-------STSLVINPVGREDRGIYQCIARRSDGDVAQG 146
G W + + S+VI + G Y + +
Sbjct: 73 DAPGNISCLWVFKHSSLNCQPHFDLQNRGVVSMVILKMTETQAGEYLLFIQSEATN-YTI 131
Query: 147 SAELQLGGLPYVRLIPKVTAIDGEGLSIKCPVAGYPIEEVHWEKVPPKIESFAFPFDGLP 206
+ + L ++ C
Sbjct: 132 LFTVSIRNTLLYTLRRPYFRKMENQDALVCISE--------------------------- 164
Query: 207 EGARTRVICGVTHGDPPLTIRWLKDGKPLSPRFPVNVSDLDSFSSLLSINSVSAAHSGEY 266
P + W+ + + +
Sbjct: 165 -------------SVPEPIVEWVLCDSQGES-----CKEESPAVVKKEEKVLHELFGTDI 206
Query: 267 TCVASNTAAQAR 278
C A N +
Sbjct: 207 RCCARNELGREC 218
Score = 70.1 bits (171), Expect = 8e-14
Identities = 13/170 (7%), Positives = 37/170 (21%), Gaps = 46/170 (27%)
Query: 117 TSLVINPVGREDRGIYQCIARRSDGDVAQGSAELQLGGLPYVRLIPKVTAIDGEGLSIKC 176
+ N Y ++ + L+ V V ++++
Sbjct: 15 INHKNNDSSVGKSSSYPMVSESPEDLGCA----LRPQSSGTVYEAAAVEVDVSASITLQV 70
Query: 177 PVAGYPIEEVHWEKVPPKIESFAFPFDGLPEGARTRVICGVTHGDPPLTIRWLKDGKPLS 236
V ++ W+ L+
Sbjct: 71 LVDAPG----------------------------------------NISCLWVFKHSSLN 90
Query: 237 PRFPVNVSDLDSFSSLLSINSVSAAHSGEYTCVASNTAAQARYSSKLQVK 286
+ + + + I ++ +GEY + A + ++
Sbjct: 91 CQ--PHFDLQNRGVVSMVILKMTETQAGEYLLFIQSEATNYTILFTVSIR 138
Score = 69.0 bits (168), Expect = 2e-13
Identities = 21/175 (12%), Positives = 33/175 (18%), Gaps = 51/175 (29%)
Query: 5 LTYSFIEQTLQPGPAVSLKCIASGNPTPDIGWTLDGFELPTNNRFVIGQFVSGHGDVISH 64
T S + + P WT P + +
Sbjct: 329 ATNSSEDYEIDQYEEFCFSVRFKAYPQIRCTWTFSRKSFPCEQKGLDNG---------YS 379
Query: 65 VNISHVTVEDGGEYACVAENRAGTCE------------ITPYDSGPYL-----------I 101
++ GEY AEN + S
Sbjct: 380 ISKFCNHKHQPGEYIFHAENDDAQFTKMFTLNIRRKPQVLAEASASQASCFSDGYPLPSW 439
Query: 102 AWFKDGRQIPGRTSS-------------------TSLVINPVGREDRGIYQCIAR 137
W K + P T +S +N + +C A
Sbjct: 440 TWKKCSDKSPNCTEEITEGVWNRKANRKVFGQWVSSSTLNMSEAIKGFLVKCCAY 494
>3qs7_E FL cytokine receptor; immunoglobulin-like domain, four-helical
bundle cytokine, CY receptor complex, extracellular
complex; HET: NAG; 4.30A {Homo sapiens}
Length = 423
Score = 133 bits (336), Expect = 2e-36
Identities = 40/327 (12%), Positives = 74/327 (22%), Gaps = 94/327 (28%)
Query: 2 PPILTYSFIEQTLQPGPAVSLKCIASGNPTPDIGWTLDGFELPTNNRFVIGQFVSGHGDV 61
Y + +++L+ + W L F +
Sbjct: 48 SSGTVYEAAAVEVDVSASITLQVLVDAPGNISCLWVFKHSSLNCQPHFDL------QNRG 101
Query: 62 ISHVNISHVTVEDGGEYACVAENRAG--TCEITPYDSGPYLIA----------------- 102
+ + I +T GEY ++ A T T L
Sbjct: 102 VVSMVILKMTETQAGEYLLFIQSEATNYTILFTVSIRNTLLYTLRRPYFRKMENQDALVC 161
Query: 103 -----------WFKDGRQIP-------GRTSSTSLVINPVGREDRGIYQCIARRSDGDVA 144
W Q V++ + D +C AR
Sbjct: 162 ISESVPEPIVEWVLCDSQGESCKEESPAVVKKEEKVLHELFGTD---IRCCARNE----- 213
Query: 145 QGSAELQLGGLPYVRLIPKVTAIDGEGLSIKCPVAGYPIEEVHWEKVPPKIESFAFPFDG 204
G + + + P
Sbjct: 214 ----------------------------------LGRECTRLFTIDLNQTPQ-TTLPQLF 238
Query: 205 LPEGARTRVICGVTHGDPPLTIRWLKDGKPLSPRFPVNVSDLDS-----FSSLLSINSVS 259
L G + C H + + W + K L +S + ++SV+
Sbjct: 239 LKVGEPLWIRCKAVHVNHGFGLTWELENKALEEGNYFEMSTYSTNRTMIRILFAFVSSVA 298
Query: 260 AAHSGEYTCVASNTAAQARYSSKLQVK 286
+G YTC +S +Q S+ + +
Sbjct: 299 RNDTGYYTCSSSKHPSQ---SALVTIV 322
Score = 121 bits (305), Expect = 4e-32
Identities = 42/335 (12%), Positives = 68/335 (20%), Gaps = 109/335 (32%)
Query: 1 TPPILTYSFIEQTLQPGPAVSLKCIASGNPTPDIGWTLDGFELPTNNRFVIGQFVSGHGD 60
+ T L CI+ P P + W L + +
Sbjct: 139 NTLLYTLRRPYFRKMENQDA-LVCISESVPEPIVEWVLCDSQGESCKEESPAVVKKEE-- 195
Query: 61 VISHVNISHVTVEDGGEYACVAENRAG--------------------------------T 88
+ G + C A N G
Sbjct: 196 -------KVLHELFGTDIRCCARNELGRECTRLFTIDLNQTPQTTLPQLFLKVGEPLWIR 248
Query: 89 CEITPYDSGPYLIAWFKDGRQIP--------------GRTSSTSLVINPVGREDRGIYQC 134
C+ + G + W + + + ++ V R D G Y C
Sbjct: 249 CKAVHVNHGFG-LTWELENKALEEGNYFEMSTYSTNRTMIRILFAFVSSVARNDTGYYTC 307
Query: 135 IARRSDGDVAQGSAELQLGGLPYVRLIPK---VTAIDGEGLSIKCPVAGYPIEEVHWEKV 191
+ + SA + + ++ E Y
Sbjct: 308 SSSKHPSQ----SALVTIVEKGFINATNSSEDYEIDQYEEFCFSVRFKAY---------- 353
Query: 192 PPKIESFAFPFDGLPEGARTRVICGVTHGDPPLTIRWLKDGKPLSPRFPVNVSDLDSFSS 251
P + W K P LD+ S
Sbjct: 354 ------------------------------PQIRCTWTFSRKSF----PCEQKGLDNGYS 379
Query: 252 LLSINSVSAAHSGEYTCVASNTAAQARYSSKLQVK 286
+S GEY A N AQ L ++
Sbjct: 380 -ISKFCNHKHQPGEYIFHAENDDAQFTKMFTLNIR 413
Score = 110 bits (275), Expect = 7e-28
Identities = 27/194 (13%), Positives = 48/194 (24%), Gaps = 43/194 (22%)
Query: 2 PPILTYSFIEQTLQPGPAVSLKCIA-SGNPTPDIGWTLDGFELPTNNRFVIGQFVSGHGD 60
+ + L+ G + ++C A N + W L+ L N F + + +
Sbjct: 227 NQTPQTTLPQLFLKVGEPLWIRCKAVHVNHGFGLTWELENKALEEGNYFEMSTYSTNRTM 286
Query: 61 V-ISHVNISHVTVEDGGEYACVAENRAG-------------------------------- 87
+ I +S V D G Y C +
Sbjct: 287 IRILFAFVSSVARNDTGYYTCSSSKHPSQSALVTIVEKGFINATNSSEDYEIDQYEEFCF 346
Query: 88 TCEITPYDSGPYL-IAWFKDGRQIPGR----TSSTSLVINPVGREDRGIYQCIARRSDGD 142
+ Y P + W + P + S+ + G Y A D
Sbjct: 347 SVRFKAY---PQIRCTWTFSRKSFPCEQKGLDNGYSISKFCNHKHQPGEYIFHAENDDA- 402
Query: 143 VAQGSAELQLGGLP 156
L +
Sbjct: 403 QFTKMFTLNIRSGT 416
Score = 80.9 bits (199), Expect = 2e-17
Identities = 21/257 (8%), Positives = 45/257 (17%), Gaps = 80/257 (31%)
Query: 61 VISHVNISHVTVEDGGEYACVAENRAGT-CEITPYD------------------------ 95
V+ + + +V Y V+E+ C + P
Sbjct: 13 VLINHKNNDSSVGKSSSYPMVSESPEDLGCALRPQSSGTVYEAAAVEVDVSASITLQVLV 72
Query: 96 --SGPYLIAWFKDGRQIPGRTS-------STSLVINPVGREDRGIYQCIARRSDGDVAQG 146
G W + + S+VI + G Y + +
Sbjct: 73 DAPGNISCLWVFKHSSLNCQPHFDLQNRGVVSMVILKMTETQAGEYLLFIQSEATN-YTI 131
Query: 147 SAELQLGGLPYVRLIPKVTAIDGEGLSIKCPVAGYPIEEVHWEKVPPKIESFAFPFDGLP 206
+ + L ++ C P
Sbjct: 132 LFTVSIRNTLLYTLRRPYFRKMENQDALVCISESVP------------------------ 167
Query: 207 EGARTRVICGVTHGDPPLTIRWLKDGKPLSPRFPVNVSDLDSFSSLLSINSVSAAHSGEY 266
+ W+ + + + +
Sbjct: 168 ----------------EPIVEWVLCDSQ-----GESCKEESPAVVKKEEKVLHELFGTDI 206
Query: 267 TCVASNTAAQARYSSKL 283
C A N +
Sbjct: 207 RCCARNELGRECTRLFT 223
Score = 73.9 bits (181), Expect = 3e-15
Identities = 13/170 (7%), Positives = 38/170 (22%), Gaps = 46/170 (27%)
Query: 117 TSLVINPVGREDRGIYQCIARRSDGDVAQGSAELQLGGLPYVRLIPKVTAIDGEGLSIKC 176
+ N Y ++ + + V V ++++
Sbjct: 15 INHKNNDSSVGKSSSYPMVSESPEDLGCALRPQ----SSGTVYEAAAVEVDVSASITLQV 70
Query: 177 PVAGYPIEEVHWEKVPPKIESFAFPFDGLPEGARTRVICGVTHGDPPLTIRWLKDGKPLS 236
V ++ W+ L+
Sbjct: 71 LVDAPG----------------------------------------NISCLWVFKHSSLN 90
Query: 237 PRFPVNVSDLDSFSSLLSINSVSAAHSGEYTCVASNTAAQARYSSKLQVK 286
+ ++ + S + I ++ +GEY + A + ++
Sbjct: 91 CQPHFDLQNRGVVS--MVILKMTETQAGEYLLFIQSEATNYTILFTVSIR 138
>1bih_A Hemolin; insect immunity, LPS-binding, homophilic adhesion; 3.10A
{Hyalophora cecropia} SCOP: b.1.1.4 b.1.1.4 b.1.1.4
b.1.1.4
Length = 395
Score = 132 bits (333), Expect = 3e-36
Identities = 53/337 (15%), Positives = 83/337 (24%), Gaps = 88/337 (26%)
Query: 2 PPILTYSFIEQTLQPGPAVSLKCIASGNPTP-DIGWTLDGFELPTNNRFVIGQFVSGHGD 60
P+L E + L+CI GN W DG + G
Sbjct: 6 YPVLKDQPAEVLFRENNPTVLECIIEGNDQGVKYSWKKDGKSYNWQEHNAALRKDEGS-- 63
Query: 61 VISHVNISHVTVEDGGEYACVAENRAGT-------------------------------- 88
+ D G Y C AE AG
Sbjct: 64 ----LVFLRPQASDEGHYQCFAETPAGVASSRVISFRKTYLIASPAKTHEKTPIEGRPFQ 119
Query: 89 --CEITPYDSGPYLIAWFKDGRQIPGRTSST------------SLVINPVGREDR---GI 131
C + P LI W K T +L V +ED
Sbjct: 120 LDCVLPNAYPKP-LITWKKRLSGADPNADVTDFDRRITAGPDGNLYFTIVTKEDVSDIYK 178
Query: 132 YQCIARRSDGDVAQGSAELQLGGLPYVRLIPKVTAIDGEGLSIKCPVAGYPIEEVHWEKV 191
Y C A+ + D E ++ + + +
Sbjct: 179 YVCTAKNAAVDEEVVLVEYEI----------------------------KGVTKDNSGYK 210
Query: 192 PPKIESFAFPFDGLPEGARTRVICGVTHGDPPLTIRWLKDGKPLSPRFPVNVSD-LDSFS 250
+ + G T + C +P + K+GK ++ ++ +
Sbjct: 211 GEPVPQYVSKDMMAKAGDVTMIYCMYG-SNPMGYPNYFKNGKDVNGNPEDRITRHNRTSG 269
Query: 251 SLLSINSVSAAHSGEYTCVASNTAAQA-RYSSKLQVK 286
L + G YTC N + ++S KL V
Sbjct: 270 KRLLFKTTLPEDEGVYTCEVDNGVGKPQKHSLKLTVV 306
Score = 118 bits (298), Expect = 4e-31
Identities = 65/333 (19%), Positives = 96/333 (28%), Gaps = 105/333 (31%)
Query: 11 EQTLQPGPAVSLKC-IASGNPTPDIGWTLDGFELPTNNRFVIGQ--FVSGHGDVISHVNI 67
E+T G L C + + P P I W N +G + +
Sbjct: 109 EKTPIEGRPFQLDCVLPNAYPKPLITWKKRLSGADPNADVTDFDRRITAGPDGNLYFTIV 168
Query: 68 SHVTVEDGGEYACVAENRAGTCE----------ITPYDSGPYL----------------- 100
+ V D +Y C A+N A E +T +SG
Sbjct: 169 TKEDVSDIYKYVCTAKNAAVDEEVVLVEYEIKGVTKDNSGYKGEPVPQYVSKDMMAKAGD 228
Query: 101 ---------------IAWFKDGRQIPG----------RTSSTSLVINPVGREDRGIYQCI 135
+FK+G+ + G RTS L+ ED G+Y C
Sbjct: 229 VTMIYCMYGSNPMGYPNYFKNGKDVNGNPEDRITRHNRTSGKRLLFKTTLPEDEGVYTCE 288
Query: 136 ARRSDGDVAQGSAELQLGGLPYVRLIPK--VTAIDGEGLSIKCPVAGYPIEEVHWEKVPP 193
G + S +L + P P+ + G+ ++I C V G P P
Sbjct: 289 VDNGVGKPQKHSLKLTVVSAPKYEQKPEKVIVVKQGQDVTIPCKVTGLP---------AP 339
Query: 194 KIESFAFPFDGLPEGARTRVICGVTHGDPPLTIRWLKDGKPLS-PRFPVNVSDLDSFSSL 252
+ W + KPLS R V S
Sbjct: 340 -------------------------------NVVWSHNAKPLSGGRATVT-------DSG 361
Query: 253 LSINSVSAAHSGEYTCVASNTAAQARYSSKLQV 285
L I V G Y C A+N + + +QV
Sbjct: 362 LVIKGVKNGDKGYYGCRATNEHGDKYFETLVQV 394
Score = 116 bits (291), Expect = 3e-30
Identities = 34/190 (17%), Positives = 57/190 (30%), Gaps = 48/190 (25%)
Query: 2 PPILTYSFIEQTLQPGPAVSLKCIASGNPTPDIGWTLDGFELPTNNRFVIGQFVSGHGDV 61
P+ Y + + G + C+ NP + +G ++ N I + G
Sbjct: 212 EPVPQYVSKDMMAKAGDVTMIYCMYGSNPMGYPNYFKNGKDVNGNPEDRITRHNRTSGKR 271
Query: 62 ISHVNISHVTVEDGGEYACVAENRAGT--------------------------------- 88
+ ED G Y C +N G
Sbjct: 272 LL---FKTTLPEDEGVYTCEVDNGVGKPQKHSLKLTVVSAPKYEQKPEKVIVVKQGQDVT 328
Query: 89 --CEIT--PYDSGPYLIAWFKDGRQIPG---RTSSTSLVINPVGREDRGIYQCIARRSDG 141
C++T P + + W + + + G + + LVI V D+G Y C A G
Sbjct: 329 IPCKVTGLPAPN----VVWSHNAKPLSGGRATVTDSGLVIKGVKNGDKGYYGCRATNEHG 384
Query: 142 DVAQGSAELQ 151
D +Q
Sbjct: 385 DK-YFETLVQ 393
>1qz1_A Neural cell adhesion molecule 1, 140 kDa isoform; IG modules, NCAM;
2.00A {Rattus norvegicus} SCOP: b.1.1.4 b.1.1.4 b.1.1.4
PDB: 1ie5_A
Length = 291
Score = 129 bits (326), Expect = 5e-36
Identities = 63/322 (19%), Positives = 104/322 (32%), Gaps = 89/322 (27%)
Query: 11 EQTLQPGPAVSLKCIASGNPT-PDIGWT-LDGFELPTNNRFVIGQFVSGHGDVISHVNIS 68
+ + G + C +G+ DI W +G +L N + + V + D S + I
Sbjct: 11 QGEISVGESKFFLCQVAGDAKDKDISWFSPNGEKLSPNQQRIS---VVWNDDDSSTLTIY 67
Query: 69 HVTVEDGGEYACVAENRAGTC---------------EITPYD---------------SG- 97
+ ++D G Y CV GT + P
Sbjct: 68 NANIDDAGIYKCVVTAEDGTQSEATVNVKIFQKLMFKNAPTPQEFKEGEDAVIVCDVVSS 127
Query: 98 -PYLIAWFKDGRQIPGRT-------SSTSLVINPVGREDRGIYQCIARRSDG-DVAQGSA 148
P I W GR + + S+ L I + + D G Y+C R ++
Sbjct: 128 LPPTIIWKHKGRDVILKKDVRFIVLSNNYLQIRGIKKTDEGTYRCEGRILARGEINFKDI 187
Query: 149 ELQLGGLPYVRLIPK---VTAIDGEGLSIKCPVAGYPIEEVHWEKVPPKIESFAFPFDGL 205
++ + P V+ TA G+ +++ C G+P P
Sbjct: 188 QVIVNVPPTVQARQSIVNATANLGQSVTLVCDADGFP---------EP------------ 226
Query: 206 PEGARTRVICGVTHGDPPLTIRWLKDGKPLSPRFPVNVSD-LDSFSSLLSINSVSAAHSG 264
T+ W KDG+P+ + SS L+I +V
Sbjct: 227 -------------------TMSWTKDGEPIENEEEDDEKHIFSDDSSELTIRNVDKNDEA 267
Query: 265 EYTCVASNTAAQARYSSKLQVK 286
EY C+A N A + S L+V
Sbjct: 268 EYVCIAENKAGEQDASIHLKVF 289
Score = 88.8 bits (220), Expect = 8e-21
Identities = 27/89 (30%), Positives = 37/89 (41%), Gaps = 3/89 (3%)
Query: 2 PPILTYSFIEQTLQPGPAVSLKCIASGNPTPDIGWTLDGFELPTNNRFVIGQFVSGHGDV 61
S + T G +V+L C A G P P + WT DG + S
Sbjct: 196 TVQARQSIVNATANLGQSVTLVCDADGFPEPTMSWTKDGEPIENEEEDDEKHIFSDDS-- 253
Query: 62 ISHVNISHVTVEDGGEYACVAENRAGTCE 90
S + I +V D EY C+AEN+AG +
Sbjct: 254 -SELTIRNVDKNDEAEYVCIAENKAGEQD 281
>2y23_A Myomesin; structural protein, sarcomere, M-BAND, immunoglobulin-
like; 2.50A {Homo sapiens}
Length = 312
Score = 129 bits (326), Expect = 8e-36
Identities = 42/339 (12%), Positives = 88/339 (25%), Gaps = 84/339 (24%)
Query: 2 PPILTYSFIEQTLQPGPAVSLKCIASGNPTPDIGWTLDGFELPTNNRFVIGQFVSGHGDV 61
P + +++ +C P + W+ D + R +
Sbjct: 3 DPFTKEVVVNVDDDGVISLNFECDK-MTPKSEFSWSKDYVSTEDSPRLEVE-----SKGN 56
Query: 62 ISHVNISHVTVEDGGEYACVAENRAGTCEITPYDSGPYL--------------------- 100
+ + + ++D G Y+C + G D
Sbjct: 57 KTKMTFKDLGMDDLGIYSCDVTDTDGIASSYLIDEEELKRLLALSHEHKFPTVPVKSELA 116
Query: 101 -----------------------IAWFKDGRQIP----------GRTSSTSLVINPVGRE 127
+ + + ++I T + + + E
Sbjct: 117 VEILEKGQVRFWMQAEKLSGNAKVNYIFNEKEIFEGPKYKMHIDRNTGIIEMFMEKLQDE 176
Query: 128 DRGIYQCIARRSDGDVAQGSAELQLGGLPYVRLIPKVTAIDGEGLSIKCPVAGYPIEEVH 187
D G Y + A + + L G + +L + E + + P +E +
Sbjct: 177 DEGTYTFQLQ---DGKATNHSTVVLVGDVFKKLQKEAEFQRQEWIRKQGPH---FVEYLS 230
Query: 188 WEKVPPKIESFAFPFDGLPEGARTRVICGVTHGDPPLTIRWLKDGKPLSPRFPVNVSDLD 247
WE + + C V + I W KD + +S + D
Sbjct: 231 WE---------------VTGECNVLLKCKVANIKKETHIVWYKDEREISVDEKHDFKD-- 273
Query: 248 SFSSLLSINSVSAAHSGEYTCVASNTAAQARYSSKLQVK 286
L I S +G Y + + + + KL +
Sbjct: 274 -GICTLLITEFSKKDAGIYEVILKDDRGKDKSRLKLVDE 311
>2o26_X MAST/stem cell growth factor receptor; stem cell factor, receptor
tyrosine kinase, class III, recep ligand complex,
cytokine, 4-helix bundle; HET: NAG FUL MAN NDG; 2.50A
{Mus musculus}
Length = 290
Score = 126 bits (318), Expect = 6e-35
Identities = 50/328 (15%), Positives = 86/328 (26%), Gaps = 95/328 (28%)
Query: 1 TPPILTYSFIEQTLQPGPAVSLKCIASGNPTPDIGWTLDGFELPTNNRFVIGQFVSGHGD 60
+PP + + E ++ G +SL CI + WT + +
Sbjct: 11 SPPSIHPAQSELIVEAGDTLSLTCIDPDF----VRWTFKTYFNEMVE------------N 54
Query: 61 VISHVNISHVTVEDGGEYACVAENRAGT------------------------------CE 90
+ G Y C N + C
Sbjct: 55 KKNEWIQEKAEATRTGTYTCSNSNGLTSSIYVFVRDPAKLFLVGLPLFGKEDSDALVRCP 114
Query: 91 ITPYDSGPYLIAWFK-DGRQIPGRTS------STSLVINPVGREDRGIYQCIARRSDGDV 143
+T D + + DG+ +P + + + N R +C A+R +
Sbjct: 115 LT--DPQVSQYSLIECDGKSLPTDLTFVPNPKAGITIKNVKRAYHRLCVRCAAQRDGTWL 172
Query: 144 AQGSAELQLGGLPYVRLIPKVTAIDGEGLSIKCPVAGYPIEEVHWEKVPPKIESFAFPFD 203
L+ VR K P +
Sbjct: 173 HSDKFTLK------VREAI---------------------------KAIPVVSVPETSH- 198
Query: 204 GLPEGARTRVICGVTHGDPPLTIRWLKDGKPLSPRFPVNVSDLDS------FSSLLSINS 257
L +G V+C + + WLK V + L+I+S
Sbjct: 199 LLKKGDTFTVVCTIKDVSTSVNSMWLKMNPQPQHIAQVKHNSWHRGDFNYERQETLTISS 258
Query: 258 VSAAHSGEYTCVASNTAAQARYSSKLQV 285
SG + C A+NT A ++ L+V
Sbjct: 259 ARVDDSGVFMCYANNTFGSANVTTTLKV 286
Score = 64.0 bits (155), Expect = 4e-12
Identities = 21/193 (10%), Positives = 40/193 (20%), Gaps = 49/193 (25%)
Query: 96 SGPYLIAWFKDGR-QIPGRTSSTSLVINPVGREDRGIYQCIARRSDGDVAQGSAELQLGG 154
P + W + G Y C S + +
Sbjct: 35 IDPDFVRWTFKTYFNEMVENKKNEWIQEKAEATRTGTYTCSNSNGLT----SSIYVFVRD 90
Query: 155 LPYVRLIPK-VTAIDGEGLSIKCPVAGYPIEEVHWEKVPPKIESFAFPFDGLPEGARTRV 213
+ L+ + + ++CP+ + + +
Sbjct: 91 PAKLFLVGLPLFGKEDSDALVRCPLTDPQVSQYSLIE----------------------- 127
Query: 214 ICGVTHGDPPLTIRWLKDGKPLSPRFPVNVSDLDSFSSLLSINSVSAAHSGEYTCVASNT 273
DGK L + + + N A H C A
Sbjct: 128 ----------------CDGKSLPTDLTFVP---NPKAGITIKNVKRAYHRLCVRCAAQR- 167
Query: 274 AAQARYSSKLQVK 286
+S K +K
Sbjct: 168 DGTWLHSDKFTLK 180
>3lcy_A Titin; A-BAND, IG tandem domains, ATP-binding, calmodulin-BI
cardiomyopathy, disease mutation, disulfide bond,
immunoglo domain, isopeptide bond; 2.50A {Homo sapiens}
Length = 197
Score = 122 bits (307), Expect = 3e-34
Identities = 45/285 (15%), Positives = 76/285 (26%), Gaps = 96/285 (33%)
Query: 2 PPILTYSFIEQTLQPGPAVSLKCIASGNPTPDIGWTLDGFELPTNNRFVIGQFVSGHGDV 61
P + + T + G A L C G P PDI W G EL + ++ +
Sbjct: 7 APGIRKEMKDVTTKLGEAAQLSCQIVGRPLPDIKWYRFGKELIQSRKYKM-----SSDGR 61
Query: 62 ISHVNISHVTVEDGGEYACVAENRAGTCEITPYDSGPYLIAWFKDGRQIPGRTSSTSLVI 121
+ + ED G Y C+A N G E +S+ L++
Sbjct: 62 THTLTVMTEEQEDEGVYTCIATNEVGEVE------------------------TSSKLLL 97
Query: 122 NPVGREDRGIYQCIARRSDGDVAQGSAELQLGGLPYVRLIPKVTAIDGEGLSIKCPVAGY 181
Q + + G L K G L + G
Sbjct: 98 -----------------------QATPQFHPG----YPLKEKYYGAVGSTLRLHVMYIGR 130
Query: 182 PIEEVHWEKVPPKIESFAFPFDGLPEGARTRVICGVTHGDPPLTIRWLKDGKPLSPRFPV 241
P P + W K L +
Sbjct: 131 P---------VP-------------------------------AMTWFHGQKLLQNSENI 150
Query: 242 NVSDLDSFSSLLSINSVSAAHSGEYTCVASNTAAQARYSSKLQVK 286
+ + + ++ L+ N H+G+Y SN ++++
Sbjct: 151 TIENTEHYTHLVMKNVQRKTHAGKYKVQLSNVFGTVDAILDVEIQ 195
>1cs6_A Axonin-1; neural cell adhesion, cell adhesion; 1.80A {Gallus
gallus} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 b.1.1.4 PDB:
2om5_A
Length = 382
Score = 126 bits (318), Expect = 4e-34
Identities = 60/332 (18%), Positives = 89/332 (26%), Gaps = 90/332 (27%)
Query: 2 PPILTYSFIEQTLQPGPA---VSLKCIASGNPTPDIGWTLDGFELPTNNRFVIGQFVSGH 58
P+ G A V+L C A NP W ++G EL + V+G
Sbjct: 4 GPVFEEQPAHTLFPEGSAEEKVTLTCRARANPPATYRWKMNGTELKMGPDSRY-RLVAG- 61
Query: 59 GDVISHVNISHVTVEDGGEYACVAENRAGT------------------------------ 88
V + V +D G Y CVA N GT
Sbjct: 62 ----DLVISNPVKAKDAGSYQCVATNARGTVVSREASLRFGFLQEFSAEERDPVKITEGW 117
Query: 89 -----CEITPYDSGPYLIAWFKDGRQIPGRTSST--------SLVINPVGREDRGIYQCI 135
C P W + +L I D G Y C
Sbjct: 118 GVMFTCSP-PPHYPALSYRWLLNEFPNFIPADGRRFVSQTTGNLYIAKTEASDLGNYSCF 176
Query: 136 ARRSDGDVAQGSAELQLGGLPYVRLIPKVTAIDGEGLSIKCPVAGYPIEEVHWEKVPPKI 195
A + + S+ + + + P I
Sbjct: 177 ATSHIDFITK---------------------------SVFSKFSQLSLAAEDARQYAPSI 209
Query: 196 ESFAFPFDG-LPEGARTRVICGVTHGDPPLTIRWLKDGKPLSPRFPVNVSDLDSFSSLLS 254
++ FP D G + C G+P I+W K + ++ S LL
Sbjct: 210 KA-KFPADTYALTGQMVTLECFAF-GNPVPQIKWRKLDGSQTSKW-------LSSEPLLH 260
Query: 255 INSVSAAHSGEYTCVASNTAAQARYSSKLQVK 286
I +V G Y C A N + Y ++ +
Sbjct: 261 IQNVDFEDEGTYECEAENIKGRDTYQGRIIIH 292
Score = 119 bits (301), Expect = 1e-31
Identities = 60/335 (17%), Positives = 87/335 (25%), Gaps = 104/335 (31%)
Query: 2 PPILTYSFIEQTLQPGPAVSLKCIA-SGNPTPDIGWTLDGFELP---TNNRFVIGQFVSG 57
+ G V C P W L+ F RFV
Sbjct: 101 QEFSAEERDPVKITEGWGVMFTCSPPPHYPALSYRWLLNEFPNFIPADGRRFVSQ----T 156
Query: 58 HGDVISHVNISHVTVEDGGEYACVAENRAGTCEITPYDSGPYL----------------- 100
G++ I+ D G Y+C A + + + L
Sbjct: 157 TGNLY----IAKTEASDLGNYSCFATSHIDFITKSVFSKFSQLSLAAEDARQYAPSIKAK 212
Query: 101 --------------------------IAWFKDGRQIPGR--TSSTSLVINPVGREDRGIY 132
I W K + +S L I V ED G Y
Sbjct: 213 FPADTYALTGQMVTLECFAFGNPVPQIKWRKLDGSQTSKWLSSEPLLHIQNVDFEDEGTY 272
Query: 133 QCIARRSDGDVAQGSAELQLGGLPYVRLIPK-VTAIDGEGLSIKCPVAGYPIEEVHWEKV 191
+C A G + + P + A G L C +G P
Sbjct: 273 ECEAENIKGRD-TYQGRIIIHAQPDWLDVITDTEADIGSDLRWSCVASGKP--------- 322
Query: 192 PPKIESFAFPFDGLPEGARTRVICGVTHGDPPLTIRWLKDGKPLSPRFPVNVSDLDSFSS 251
P +RWL+DG+PL+ + + VS
Sbjct: 323 ------------------------------RP-AVRWLRDGQPLASQNRIEVSG-----G 346
Query: 252 LLSINSVSAAHSGEYTCVASNTAAQARYSSKLQVK 286
L + + SG Y CVA N S++L V+
Sbjct: 347 ELRFSKLVLEDSGMYQCVAENKHGTVYASAELTVQ 381
>4dkd_C Macrophage colony-stimulating factor 1 receptor; dimeric four-helix
bundle cytokine, receptor tyrosine kinase glycosylation;
HET: NAG BMA; 3.00A {Homo sapiens}
Length = 292
Score = 122 bits (308), Expect = 2e-33
Identities = 53/331 (16%), Positives = 94/331 (28%), Gaps = 98/331 (29%)
Query: 1 TPPILTYSFIEQTLQPGPAVSLKCIASGNPTPDIGWTLDGFELPTNNRFVIGQFVSGHGD 60
+ P++ S E ++PG V+L+C+ +G+ + W P + G
Sbjct: 3 SIPVIEPSVPELVVKPGATVTLRCVGNGS----VEWDGP--PSPHWTLYSDGS------- 49
Query: 61 VISHVNISHVTVEDGGEYACVAENRAGT-------------------------------- 88
S ++ ++ T ++ G Y C
Sbjct: 50 -SSILSTNNATFQNTGTYRCTEPGDPLGGSAAIHLYVKDPARPWNVLAQEVVVFEDQDAL 108
Query: 89 --CEITPYDSGPYLIAWFKDGRQIPGRT-----SSTSLVINPVGREDRGIYQCIARRSDG 141
C +T + GR + T I+ YQC A
Sbjct: 109 LPCLLTDPVLEAGVSLVRVRGRPLMRHTNYSFSPWHGFTIHRAKFIQSQDYQCSALMGGR 168
Query: 142 DVAQGSAELQ----LGGLPYVRLIPK-VTAIDGEGLSIKCPVAGYPIEEVHWEKVPPKIE 196
V S L+ + G P + L+P + I GE I C +
Sbjct: 169 KVMSISIRLKVQKVIPGPPALTLVPAELVRIRGEAAQIVCSASSVD-------------- 214
Query: 197 SFAFPFDGLPEGARTRVICGVTHGDPPLTIRWLKDGKPLS-PRFPVNVSDLDSFSSLLSI 255
+ + L+ P+ ++ L++
Sbjct: 215 -------------------------VNFDVFLQHNNTKLAIPQQSDFHNNRYQKVLTLNL 249
Query: 256 NSVSAAHSGEYTCVASNTAAQARYSSKLQVK 286
+ V H+G Y+CVASN + S +V
Sbjct: 250 DQVDFQHAGNYSCVASNVQGKHSTSMFFRVV 280
>2v5m_A Dscam; neurobiology SPL immunoglobulin domain, cell adhesion,
membrane, development protein; HET: NAG; 1.95A
{Drosophila melanogaster} PDB: 2v5s_A* 2v5r_A*
Length = 388
Score = 124 bits (313), Expect = 2e-33
Identities = 59/333 (17%), Positives = 92/333 (27%), Gaps = 79/333 (23%)
Query: 2 PPILTYSFIEQTLQPGPAVSLKCIASGNPTPDIGWTLDGFELPTNNRFVIGQFVSGHGDV 61
P L ++C ASGNP P+I W + + G V
Sbjct: 4 PVFLKEPTNRIDFSNSTGAEIECKASGNPMPEIIWIRSDGTAVGDVPGLRQISSDGKL-V 62
Query: 62 ISHVNISHVTVE-DGGEYACVAENRAGT-------------------------------- 88
E YAC+A N+ G+
Sbjct: 63 FPPFRAEDYRQEVHAQVYACLARNQFGSIISRDVHVRAVVAQYYEADVNKEHVIRGNSAV 122
Query: 89 --CEITPYDSGP-YLIAWFKDGRQIPGRTSST----------SLVINPVGRED-RGIYQC 134
C I + + +++W D + + L I VG ED YQC
Sbjct: 123 IKCLIPSFVADFVEVVSWHTDEEENYFPGAEYDGKYLVLPSGELHIREVGPEDGYKSYQC 182
Query: 135 IARRSDGDVAQGSAELQLGGLPYVRLIPKVTAIDGEGLSIKCPVAGYPIEEVHWEKVPPK 194
+ + SA L I P+ P+
Sbjct: 183 RTKHRLTGETRLSATKGR-------------------LVITEPI----------SSSAPR 213
Query: 195 IESFAFPFDGLPEGARTRVICGVTHGDPPLTIRWLKDGKPLSPRFPVNVSD-LDSFSSLL 253
+ L ++C G P + RW K + + + V ++D + S L
Sbjct: 214 TPALVQKPLELMVAHTISLLCPAQ-GFPAPSFRWYKFIEGTTRKQAVVLNDRVKQVSGTL 272
Query: 254 SINSVSAAHSGEYTCVASNTAAQARYSSKLQVK 286
I SG+Y CV +N+ + L V
Sbjct: 273 IIKDAVVEDSGKYLCVVNNSVGGESVETVLTVT 305
Score = 107 bits (269), Expect = 4e-27
Identities = 48/183 (26%), Positives = 62/183 (33%), Gaps = 37/183 (20%)
Query: 2 PPILTYSFIEQTLQPGPAVSLKCIASGNPTPDIGWTLDGFELPTNNRFVIGQFVSGHGDV 61
P L +SL C A G P P W V+ V
Sbjct: 212 PRTPALVQKPLELMVAHTISLLCPAQGFPAPSFRWYKFIEGTTRKQAVVLNDRVKQVSGT 271
Query: 62 ISHVNISHVTVEDGGEYACVAENRAGTCE--------------ITPYD------------ 95
+ I VED G+Y CV N G I P
Sbjct: 272 LI---IKDAVVEDSGKYLCVVNNSVGGESVETVLTVTAPLSAKIDPPTQTVDFGRPAVFT 328
Query: 96 ---SG--PYLIAWFKDGRQIPGRTSSTSLVINPVGREDRGIYQCIARRSDGDVAQGSAEL 150
+G ++W KDG+ I S + L I V +ED+G+YQC R A+ SAEL
Sbjct: 329 CQYTGNPIKTVSWMKDGKAIG--HSESVLRIESVKKEDKGMYQCFVRNDRES-AEASAEL 385
Query: 151 QLG 153
+LG
Sbjct: 386 KLG 388
Score = 102 bits (255), Expect = 4e-25
Identities = 55/342 (16%), Positives = 88/342 (25%), Gaps = 113/342 (33%)
Query: 1 TPPILTYSFIEQTLQPGPAVSLKCIA---SGNPTPDIGWTLDGFELPTNNRFVIGQFVSG 57
++ + G + +KC+ + + W D E G+++
Sbjct: 102 VAQYYEADVNKEHVIRGNSAVIKCLIPSFVADFVEVVSWHTDEEENYFPGAEYDGKYLVL 161
Query: 58 H-GDVISHVNISHVTVEDG-GEYACVAENRAGTCEIT------------PYDSGPYL--- 100
G++ I V EDG Y C ++R S P
Sbjct: 162 PSGELH----IREVGPEDGYKSYQCRTKHRLTGETRLSATKGRLVITEPISSSAPRTPAL 217
Query: 101 --------------------------IAWFKDGRQIPG----------RTSSTSLVINPV 124
W+K + S +L+I
Sbjct: 218 VQKPLELMVAHTISLLCPAQGFPAPSFRWYKFIEGTTRKQAVVLNDRVKQVSGTLIIKDA 277
Query: 125 GREDRGIYQCIARRSDGDVAQGSAELQLGGLPYVRLIPK-VTAIDGEGLSIKCPVAGYPI 183
ED G Y C+ S G + L + ++ P T G C
Sbjct: 278 VVEDSGKYLCVVNNSVGGESV-ETVLTVTAPLSAKIDPPTQTVDFGRPAVFTCQY----- 331
Query: 184 EEVHWEKVPPKIESFAFPFDGLPEGARTRVICGVTHGDPPLTIRWLKDGKPLSPRFPVNV 243
G+P T+ W+KDGK +
Sbjct: 332 -----------------------------------TGNPIKTVSWMKDGKAIGHS----- 351
Query: 244 SDLDSFSSLLSINSVSAAHSGEYTCVASNTAAQARYSSKLQV 285
S+L I SV G Y C N A S++L++
Sbjct: 352 ------ESVLRIESVKKEDKGMYQCFVRNDRESAEASAELKL 387
Score = 52.6 bits (126), Expect = 5e-08
Identities = 15/101 (14%), Positives = 26/101 (25%), Gaps = 6/101 (5%)
Query: 190 KVPPKIESFAFPFDGLPEGARTRVICGVTHGDPPLTIRWLKDGKPLSPRFPVNVSDLDS- 248
+ P + C G+P I W++ P
Sbjct: 1 QKGPVFLKEPTNRIDFSNSTGAEIECKA-SGNPMPEIIWIRSDGTAVGDVPGLRQISSDG 59
Query: 249 ---FSSLLSINSVSAAHSGEYTCVASNTAAQARYSSKLQVK 286
F + + H+ Y C+A N S + V+
Sbjct: 60 KLVFPPFRAEDYRQEVHAQVYACLARNQFGSII-SRDVHVR 99
>3kld_A Contactin 4, axcam, BIG-2; cell adhesion, protein complex, receptor
protein tyrosine phosphatase; HET: NAG; 2.00A {Mus
musculus} PDB: 3jxa_A*
Length = 384
Score = 123 bits (311), Expect = 5e-33
Identities = 66/331 (19%), Positives = 101/331 (30%), Gaps = 86/331 (25%)
Query: 1 TPPILT---YSFIEQTLQPGPAVSLKCIASGNPTPDIGWTLDGFELPTNNRFVIGQFVSG 57
+ P+ + V L C GNP P I W L+G ++ F V G
Sbjct: 4 SGPVFVQEPSHVMFPLDSEEKKVKLSCEVKGNPKPHIRWKLNGTDVDIGMDFRY-SVVDG 62
Query: 58 HGDVISHVNISHVTVEDGGEYACVAENRAGT----------------------------- 88
S + + +D G Y C+A N GT
Sbjct: 63 -----SLLINNPNKTQDAGTYQCIATNSFGTIVSREAKLQFAYLENFKTRTRSTVSVRRG 117
Query: 89 ------CEITPYDSGPYLIAWFKDGRQIPGRTS------STSLVINPVGREDRGIYQCIA 136
C P SG AW + + +L I V + D G Y C+
Sbjct: 118 QGMVLLCGP-PPHSGELSYAWIFNEYPSYQDNRRFVSQETGNLYIAKVEKSDVGNYTCVV 176
Query: 137 RRSDGDVAQGSAELQLGGLPYVRLIPKVTAIDGEGLSIKCPVAGYPIEEVHWEKVPPKIE 196
+ + P LI + + GE PKIE
Sbjct: 177 TNTVTNHKVLG--------PPTPLILRNDGVMGE--------------------YEPKIE 208
Query: 197 SFAFPFDGLPEGARTRVICGVTHGDPPLTIRWLK-DGKPLSPRFPVNVSDLDSFSSLLSI 255
+G ++ C G+P TI W + DGKP++ + + + +L I
Sbjct: 209 VQFPETVPAEKGTTVKLECFAL-GNPVPTILWRRADGKPIARK-----ARRHKSNGILEI 262
Query: 256 NSVSAAHSGEYTCVASNTAAQARYSSKLQVK 286
+ +G Y CVA N+ + +L
Sbjct: 263 PNFQQEDAGSYECVAENSRGKNVAKGQLTFY 293
Score = 118 bits (298), Expect = 3e-31
Identities = 61/333 (18%), Positives = 99/333 (29%), Gaps = 102/333 (30%)
Query: 2 PPILTYSFIEQTLQPGPAVSLKCIA-SGNPTPDIGWTLDGFELPTNNRFVIGQFVSGHGD 60
T + +++ G + L C + W + + +NR + G+
Sbjct: 102 ENFKTRTRSTVSVRRGQGMVLLCGPPPHSGELSYAWIFNEYPSYQDNRRFV---SQETGN 158
Query: 61 VISHVNISHVTVEDGGEYACVAENRAGTCEIT-------------PYDSGPYL------- 100
+ I+ V D G Y CV N ++ + P +
Sbjct: 159 LY----IAKVEKSDVGNYTCVVTNTVTNHKVLGPPTPLILRNDGVMGEYEPKIEVQFPET 214
Query: 101 ----------------------IAWFK-DGRQIPGRT----SSTSLVINPVGREDRGIYQ 133
I W + DG+ I + S+ L I +ED G Y+
Sbjct: 215 VPAEKGTTVKLECFALGNPVPTILWRRADGKPIARKARRHKSNGILEIPNFQQEDAGSYE 274
Query: 134 CIARRSDGDVAQGSAELQLGGLPYVRLIPK-VTAIDGEGLSIKCPVAGYPIEEVHWEKVP 192
C+A S G +L P I + E + +C
Sbjct: 275 CVAENSRGKNVA-KGQLTFYAQPNWVQIINDIHVAMEESVFWECKA-------------- 319
Query: 193 PKIESFAFPFDGLPEGARTRVICGVTHGDPPLTIRWLKDGKPLSPRFPVNVSDLDSFSSL 252
+G P T RWLK+G PL R + +
Sbjct: 320 --------------------------NGRPKPTYRWLKNGDPLLTRDRIQIEQ-----GT 348
Query: 253 LSINSVSAAHSGEYTCVASNTAAQARYSSKLQV 285
L+I V+ + +G Y CVA N S++L V
Sbjct: 349 LNITIVNLSDAGMYQCVAENKHGVIFSSAELSV 381
Score = 67.2 bits (164), Expect = 7e-13
Identities = 24/88 (27%), Positives = 36/88 (40%), Gaps = 9/88 (10%)
Query: 1 TPPILTYSFIEQTLQPGPAVSLKCIASGNPTPDIGWTLDGFELPTNNRFVIGQFVSGHGD 60
P + + +V +C A+G P P W +G L T +R I
Sbjct: 294 AQPNWVQIINDIHVAMEESVFWECKANGRPKPTYRWLKNGDPLLTRDRIQI------EQG 347
Query: 61 VISHVNISHVTVEDGGEYACVAENRAGT 88
++ I+ V + D G Y CVAEN+ G
Sbjct: 348 TLN---ITIVNLSDAGMYQCVAENKHGV 372
>3rjd_A High affinity immunoglobulin gamma FC receptor I; immune system;
HET: NAG MAN FUC P33; 2.65A {Homo sapiens}
Length = 262
Score = 114 bits (287), Expect = 1e-30
Identities = 44/320 (13%), Positives = 77/320 (24%), Gaps = 96/320 (30%)
Query: 3 PILTYSFIEQTLQPGPAVSLKCIASGNPTP-DIGWTLDGFELPTNNRFVIGQFVSGHGDV 61
++T ++ V+L C P W L+G T+
Sbjct: 2 AVITLQPPWVSVFQEETVTLHCEVLHLPGSSSTQWFLNGTATQTST-------------- 47
Query: 62 ISHVNISHVTVEDGGEYACVAENRAGTCEITPYDSGPYL--------------------- 100
I+ +V D GEY C + I +L
Sbjct: 48 -PSYRITSASVNDSGEYRCQRGLSGRSDPIQLEIHRGWLLLQVSSRVFTEGEPLALRCHA 106
Query: 101 --------IAWFKDGRQIPGRTSSTSLVINPVGREDRGIYQCIARRSDGDVAQGSAELQL 152
+ ++++G+ +++L I G Y C + +
Sbjct: 107 WKDKLVYNVLYYRNGKAFKFFHWNSNLTILKTNISHNGTYHCSGMGKHR-YTSAGISVTV 165
Query: 153 GGL---PYVRLIPKVTAIDGEGLSIKCPVAGYPIEEVHWEKVPPKIESFAFPFDGLPEGA 209
L P + ++G +++ C
Sbjct: 166 KELFPAPVLNASVTSPLLEGNLVTLSCETKLLL--------------------------- 198
Query: 210 RTRVICGVTHGDPPLTIRWLKDGKPLSPRFPVNVSDLDSFSSLLSINSVSAAHSGEYTCV 269
L + K L R + SS I + SG Y C
Sbjct: 199 --------QRPGLQLYFSFYMGSKTLRGR---------NTSSEYQILTARREDSGLYWCE 241
Query: 270 ASNTAAQARYSS---KLQVK 286
A+ S +LQV
Sbjct: 242 AATEDGNVLKRSPELELQVL 261
Score = 81.1 bits (200), Expect = 3e-18
Identities = 33/191 (17%), Positives = 59/191 (30%), Gaps = 52/191 (27%)
Query: 1 TPPILTYSFIEQTLQPGPAVSLKCIASGN-PTPDIGWTLDGFELPTNNRFVIGQFVSGHG 59
L + G ++L+C A + ++ + +G +
Sbjct: 81 HRGWLLLQVSSRVFTEGEPLALRCHAWKDKLVYNVLYYRNGKAFKFFHWN---------- 130
Query: 60 DVISHVNISHVTVEDGGEYACVAENRAG-------------------------------- 87
S++ I + G Y C +
Sbjct: 131 ---SNLTILKTNISHNGTYHCSGMGKHRYTSAGISVTVKELFPAPVLNASVTSPLLEGNL 187
Query: 88 ---TCEITPYDSGPYLI---AWFKDGRQIPGRTSSTSLVINPVGREDRGIYQCIARRSDG 141
+CE P L +++ + + GR +S+ I RED G+Y C A DG
Sbjct: 188 VTLSCETKLLLQRPGLQLYFSFYMGSKTLRGRNTSSEYQILTARREDSGLYWCEAATEDG 247
Query: 142 DVAQGSAELQL 152
+V + S EL+L
Sbjct: 248 NVLKRSPELEL 258
>1nbq_A JAM, junctional adhesion molecule 1, PAM-1; reovirus receptor,
tight junction formation, immunoglobulin superfamily,
immune system; 2.90A {Homo sapiens} SCOP: b.1.1.1
b.1.1.4 PDB: 3eoy_G
Length = 209
Score = 111 bits (278), Expect = 7e-30
Identities = 49/282 (17%), Positives = 77/282 (27%), Gaps = 94/282 (33%)
Query: 11 EQTLQPGPAVSLKCIASGNPTPDIGWTLDGFELPTNNRFVIGQFVSGHGDVISHVNISHV 70
E + V L C SG +P + W D + + S V
Sbjct: 13 EVRIPENNPVKLSCAYSGFSSPRVEWKFDQGDTTRLVCYNNKITASYEDRV--------- 63
Query: 71 TVEDGGEYACVAENRAGTCEITPYDSGPYLIAWFKDGRQIPGRTSSTSLVINPVGREDRG 130
T + V RED G
Sbjct: 64 ------------------------------------------TFLPTGITFKSVTREDTG 81
Query: 131 IYQCIARRSDGDVAQGSAELQLGGLPYVRLIPKVTAIDGEGLSIKCPVAGYPIEEVHWEK 190
Y C+ G+ + G +++L V
Sbjct: 82 TYTCMVSEEGGN-SYGEVKVKL--------------------------------IVL--- 105
Query: 191 VPPKIESFAFPFDGLPEGARTRVICGVTHGDPPLTIRWLKDGKPLSP------RFPVNVS 244
VPP + P G R + C G PP W KDG + F +
Sbjct: 106 VPPSKPTVNIPS-SATIGNRAVLTCSEQDGSPPSEYTWFKDGIVMPTNPKSTRAFSNSSY 164
Query: 245 DLDSFSSLLSINSVSAAHSGEYTCVASNTAAQARYSSKLQVK 286
L+ + L + +SA+ +GEY+C A N S+ ++++
Sbjct: 165 VLNPTTGELVFDPLSASDTGEYSCEARNGYGTPMTSNAVRME 206
Score = 66.9 bits (163), Expect = 2e-13
Identities = 24/90 (26%), Positives = 34/90 (37%), Gaps = 3/90 (3%)
Query: 2 PPILTYSFIEQTLQPGPAVSLKCIAS-GNPTPDIGWTLDGFELPTNNRFVIGQFVSGHGD 60
PP I + G L C G+P + W DG +PTN + S +
Sbjct: 107 PPSKPTVNIPSSATIGNRAVLTCSEQDGSPPSEYTWFKDGIVMPTNPKSTRAFSNSSYVL 166
Query: 61 VISHVN--ISHVTVEDGGEYACVAENRAGT 88
+ ++ D GEY+C A N GT
Sbjct: 167 NPTTGELVFDPLSASDTGEYSCEARNGYGT 196
>1itb_B Type 1 interleukin-1 receptor; immunoglobulin fold, transmembrane,
glycoprotein, signal, complex (immunoglobulin/receptor);
2.50A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 PDB:
1ira_Y* 4dep_B* 1g0y_R
Length = 315
Score = 112 bits (280), Expect = 3e-29
Identities = 51/329 (15%), Positives = 90/329 (27%), Gaps = 94/329 (28%)
Query: 16 PGPAVSLKCIASGNPTP-DIGWTLDGFELPTNNRFVIGQFVSGHGDVISHVNISHVTVED 74
C + N I W D + P + + H + + VED
Sbjct: 19 ANEIDVRPCPLNPNEHKGTITWYKDDSKTPVSTE--QASRIHQHKEKLW---FVPAKVED 73
Query: 75 GGEYACVAENRAG----TCEITPYDSGPYL------------------------------ 100
G Y CV N + ++ P L
Sbjct: 74 SGHYYCVVRNSSYCLRIKISAKFVENEPNLCYNAQAIFKQKLPVAGDGGLVCPYMEFFKN 133
Query: 101 -------IAWFKDGRQIPG-----RTSSTSLVINPVGREDRGIYQCIARRSDGDVAQGSA 148
+ W+KD + + L++ V + RG Y C A +
Sbjct: 134 ENNELPKLQWYKDCKPLLLDNIHFSGVKDRLIVMNVAEKHRGNYTCHASYTYL------- 186
Query: 149 ELQLGGLPYVRLIPKVTAIDGEGLSIKCPVAGYPIEEVHWEKVPPKIESFAFPFDGLPEG 208
G + + + ++ + P I S A + G
Sbjct: 187 ----GKQYPITRVIEFITLEEN------------------KPTRPVIVSPANETMEVDLG 224
Query: 209 ARTRVICGVTHGDPPLTIRWLKDGKPLSPRFPVNVSD-----------LDSFSSLLSINS 257
++ ++IC VT G W +G + PV D + ++L+I+
Sbjct: 225 SQIQLICNVT-GQLSDIAYWKWNGSVIDEDDPVLGEDYYSVENPANKRRSTLITVLNISE 283
Query: 258 VSAAH-SGEYTCVASNTAAQARYSSKLQV 285
+ + +TC A NT +L
Sbjct: 284 IESRFYKHPFTCFAKNTHGIDAAYIQLIY 312
Score = 87.5 bits (216), Expect = 4e-20
Identities = 42/240 (17%), Positives = 64/240 (26%), Gaps = 59/240 (24%)
Query: 60 DVISHVNISHVTVEDGGEYACVAENRAGTCEITPYDSGPYLIAWFKDGRQIPGRTSST-- 117
D + V E C + P + I W+KD + P T
Sbjct: 4 DKCKEREEKIILVSSANEIDVR------PCPLNPNEH-KGTITWYKDDSKTPVSTEQASR 56
Query: 118 ------SLVINPVGREDRGIYQCIARRSDGDVAQGSAELQ-LGGLPYVRLIPKV----TA 166
L P ED G Y C+ R S + + + P + +
Sbjct: 57 IHQHKEKLWFVPAKVEDSGHYYCVVRNSSY-CLRIKISAKFVENEPNLCYNAQAIFKQKL 115
Query: 167 IDGEGLSIKCPVAGYPIEEVHWEKVPPKIESFAFPFDGLPEGARTRVICGVTHGDPPLTI 226
+ CP + E + +
Sbjct: 116 PVAGDGGLVCPYMEFFKNE----------------------------------NNELPKL 141
Query: 227 RWLKDGKPLSPRFPVNVSDLDSFSSLLSINSVSAAHSGEYTCVASNTAAQARYSSKLQVK 286
+W KD KPL D L + +V+ H G YTC AS T +Y ++
Sbjct: 142 QWYKDCKPLLLDNIHFSGVKDR----LIVMNVAEKHRGNYTCHASYTYLGKQYPITRVIE 197
Score = 72.4 bits (177), Expect = 7e-15
Identities = 18/97 (18%), Positives = 36/97 (37%), Gaps = 9/97 (9%)
Query: 1 TPPILTYSFIEQ-TLQPGPAVSLKCIASGNPTPDIGWTLDGFELPTNNRFVIGQFVS--- 56
T P++ E + G + L C +G + W +G + ++ + + S
Sbjct: 207 TRPVIVSPANETMEVDLGSQIQLICNVTGQLSDIAYWKWNGSVIDEDDPVLGEDYYSVEN 266
Query: 57 ----GHGDVISHVNISHVTVED-GGEYACVAENRAGT 88
+I+ +NIS + + C A+N G
Sbjct: 267 PANKRRSTLITVLNISEIESRFYKHPFTCFAKNTHGI 303
>3o4o_C Interleukin-1 receptor type 2; cytokine-receptor complex,
beta-trefoil, IG-like fold, immun; HET: NAG; 3.30A {Homo
sapiens}
Length = 339
Score = 112 bits (280), Expect = 4e-29
Identities = 52/352 (14%), Positives = 97/352 (27%), Gaps = 118/352 (33%)
Query: 9 FIEQTLQPGPAVSLKC-------IASGNPTPDIGWTLDGFELPTNNRFVIGQFVSGHGDV 61
+ + G V+L+C AS +P ++ W + +
Sbjct: 25 YKREFRLEGEPVALRCPQVPYWLWASVSPRINLTWHKNDSARTVPGEE--ETRMWAQDGA 82
Query: 62 ISHVNISHVTVEDGGEYACVAENRAGTCEIT-------------PYDSGPYL-------- 100
+ + ED G Y C N + +++ P+ S P +
Sbjct: 83 L---WLLPALQEDSGTYVCTTRNASYCDKMSIELRVFENTDAFLPFISYPQILTLSTSGV 139
Query: 101 -----------------IAWFKDGRQIPGRT-------SSTSLVINPVGREDRGIYQCIA 136
I W+KD + +T L+++ V ED G Y+C+
Sbjct: 140 LVCPDLSEFTRDKTDVKIQWYKDSLLLDKDNEKFLSVRGTTHLLVHDVALEDAGYYRCVL 199
Query: 137 RRSDGDV---AQGSAELQLGGLPYVRLIPK-------VTAIDGEGLSIKCPVAGYPIEEV 186
+ S EL++ IP ++A G L+I C V
Sbjct: 200 TFAHEGQQYNITRSIELRIKK-KKEETIPVIISPLKTISASLGSRLTIPCKVF------- 251
Query: 187 HWEKVPPKIESFAFPFDGLPEGARTRVICGVTHGDPPLTIRWLKDGKPL----------- 235
+ G P T+ W
Sbjct: 252 ------------------------------LGTGTPLTTMLWWTANDTHIESAYPGGRVT 281
Query: 236 -SPRFPVNVSDLDSFSSLLSINSVSAAHSG-EYTCVASNTAAQARYSSKLQV 285
PR + ++ + L + V+ ++ CV NT + + ++
Sbjct: 282 EGPRQEYSENNENYIEVPLIFDPVTREDLHMDFKCVVHNTLSFQTLRTTVKE 333
Score = 91.7 bits (227), Expect = 1e-21
Identities = 29/197 (14%), Positives = 55/197 (27%), Gaps = 49/197 (24%)
Query: 101 IAWFKDGRQIPGRTSST--------SLVINPVGREDRGIYQCIARRSDGDVAQGSAELQL 152
+ W K+ +L + P +ED G Y C R + + S EL++
Sbjct: 57 LTWHKNDSARTVPGEEETRMWAQDGALWLLPALQEDSGTYVCTTRNASY-CDKMSIELRV 115
Query: 153 GGLPYV---RLIPKVTAIDGEGLSIKCPVAGYPIEEVHWEKVPPKIESFAFPFDGLPEGA 209
+ + CP
Sbjct: 116 FENTDAFLPFISYPQILTLSTSGVLVCPD------------------------------- 144
Query: 210 RTRVICGVTHGDPPLTIRWLKDGKPLSPRFPVNVSDLDSFSSLLSINSVSAAHSGEYTCV 269
+ T + I+W KD L +S + + L ++ V+ +G Y CV
Sbjct: 145 ----LSEFTRDKTDVKIQWYKDSLLLDKDNEKFLSVRGT--THLLVHDVALEDAGYYRCV 198
Query: 270 ASNTAAQARYSSKLQVK 286
+ +Y+ ++
Sbjct: 199 LTFAHEGQQYNITRSIE 215
Score = 64.7 bits (157), Expect = 3e-12
Identities = 16/104 (15%), Positives = 32/104 (30%), Gaps = 12/104 (11%)
Query: 1 TPPILTYSFIEQTLQPGPAVSLKC---IASGNPTPDIGWTLDGFELPTNN----RFVIGQ 53
T P++ + G +++ C + +G P + W + R G
Sbjct: 225 TIPVIISPLKTISASLGSRLTIPCKVFLGTGTPLTTMLWWTANDTHIESAYPGGRVTEGP 284
Query: 54 F----VSGHGDVISHVNISHVTVED-GGEYACVAENRAGTCEIT 92
+ + + VT ED ++ CV N +
Sbjct: 285 RQEYSENNENYIEVPLIFDPVTREDLHMDFKCVVHNTLSFQTLR 328
Score = 59.3 bits (143), Expect = 3e-10
Identities = 12/70 (17%), Positives = 23/70 (32%), Gaps = 1/70 (1%)
Query: 217 VTHGDPPLTIRWLKDGKPLSPRFPVNVSDLDSFSSLLSINSVSAAHSGEYTCVASNTAAQ 276
P + + W K+ + + + L + SG Y C N +
Sbjct: 48 WASVSPRINLTWHKNDSARTVPGEEETR-MWAQDGALWLLPALQEDSGTYVCTTRNASYC 106
Query: 277 ARYSSKLQVK 286
+ S +L+V
Sbjct: 107 DKMSIELRVF 116
>2r15_A Myomesin-1; sarcomeric protein, IG-like domains, homodimer,
immunoglobul domain, muscle protein, thick filament,
contractIle protein; 2.24A {Homo sapiens}
Length = 212
Score = 106 bits (266), Expect = 4e-28
Identities = 46/237 (19%), Positives = 71/237 (29%), Gaps = 39/237 (16%)
Query: 59 GDVISHVNISHVTVEDGGEYACVAENRAGTCEITPYDSGPYLIAWFKDGRQIP--GRTSS 116
G I+ +S ++ AE +T Y + W +G I R +
Sbjct: 1 GSSIA---LSATDLKI----QSTAEGIQLYSFVTYYVEDLK-VNWSHNGSAIRYSDRVKT 52
Query: 117 T------SLVINPVGREDRGIYQCIARRSDGDVAQGSAELQLGGLPYVRLIPKVTAIDGE 170
L IN D+G Y Q + +L G+
Sbjct: 53 GVTGEQIWLQINEPTPNDKGKYVMELFDGKT-GHQKTVDLS-----------------GQ 94
Query: 171 GLSIKCPVAGYPIEEVHWEKVPPKIESFAFPFDGLPEGARTRVICGVTHGDPPLTIRWLK 230
+ EK ++ + EG + C V GDPP + WLK
Sbjct: 95 AYDEAYAEFQRLKQAAIAEKNRARVLGGLPDVVTIQEGKALNLTCNVW-GDPPPEVSWLK 153
Query: 231 DGKPL--SPRFPVNVSDLDSFSSLLSINSVSAAHSGEYTCVASNTAAQARYSSKLQV 285
+ K L + + + +IN VS A SG+Y V N + V
Sbjct: 154 NEKALAQTDHCNLKFEAGRTAY--FTINGVSTADSGKYGLVVKNKYGSETSDFTVSV 208
Score = 81.8 bits (202), Expect = 7e-19
Identities = 20/91 (21%), Positives = 38/91 (41%), Gaps = 4/91 (4%)
Query: 2 PPILTYSFIEQTLQPGPAVSLKCIASGNPTPDIGWTLDGFELPTNNRFVIGQFVSGHGDV 61
+L T+Q G A++L C G+P P++ W + L + +
Sbjct: 117 ARVLGGLPDVVTIQEGKALNLTCNVWGDPPPEVSWLKNEKALAQTDHCNLKF----EAGR 172
Query: 62 ISHVNISHVTVEDGGEYACVAENRAGTCEIT 92
++ I+ V+ D G+Y V +N+ G+
Sbjct: 173 TAYFTINGVSTADSGKYGLVVKNKYGSETSD 203
Score = 72.2 bits (177), Expect = 3e-15
Identities = 12/75 (16%), Positives = 24/75 (32%), Gaps = 1/75 (1%)
Query: 212 RVICGVTHGDPPLTIRWLKDGKPLSPRFPVNVSDLDSFSSLLSINSVSAAHSGEYTCVAS 271
++ VT+ L + W +G + V L IN + G+Y
Sbjct: 21 QLYSFVTYYVEDLKVNWSHNGSAIRYSDRVKTGVTGEQIWLQ-INEPTPNDKGKYVMELF 79
Query: 272 NTAAQARYSSKLQVK 286
+ + + L +
Sbjct: 80 DGKTGHQKTVDLSGQ 94
>1ry7_B FGFR-3, fibroblast growth factor receptor 3; FGF-FGFR complex, beta
trefoil, IG domain, growth factor/growth factor receptor
complex; 3.20A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4
Length = 334
Score = 108 bits (272), Expect = 7e-28
Identities = 48/291 (16%), Positives = 72/291 (24%), Gaps = 89/291 (30%)
Query: 2 PPILTYSFIEQTLQPGPAVSLKCIA-SGNPTPDIGWTLDGFELPTNNRFVIGQFVSGHGD 60
P + G AV L C G P W DG L + R ++G
Sbjct: 8 PGPEPGQQEQLVFGSGDAVELSCPPPGGGPMGPTVWVKDGTGLVPSERVLVGP------- 60
Query: 61 VISHVNISHVTVEDGGEYACVAENRAGTCEITPYDSGPYLIAWFKDGRQIPGRTSSTSLV 120
+ + + + ED G Y+C + V
Sbjct: 61 --QRLQVLNASHEDSGAYSCRQRLTQRV------------------------LCHFSVRV 94
Query: 121 INPVGREDRGIYQCIARRSDGDVAQGSAELQLGGLPYVRLIPK-----VTAIDGEGLSIK 175
+ D + + G PY + + + +
Sbjct: 95 TDAPSSGD----------DEDGEDEAEDTGVDTGAPYWTRPERMDKKLLAVPAANTVRFR 144
Query: 176 CPVAGYPIEEVHWEKVPPKIESFAFPFDGLPEGARTRVICGVTHGDPPLTIRWLKDGKPL 235
CP AG P P +I WLK+G+
Sbjct: 145 CPAAGNP---------TP-------------------------------SISWLKNGREF 164
Query: 236 SPRFPVNVSDLDSFSSLLSINSVSAAHSGEYTCVASNTAAQARYSSKLQVK 286
+ L L + SV + G YTCV N R + L V
Sbjct: 165 RGEHRIGGIKLRHQQWSLVMESVVPSDRGNYTCVVENKFGSIRQTYTLDVL 215
Score = 94.3 bits (234), Expect = 1e-22
Identities = 47/276 (17%), Positives = 80/276 (28%), Gaps = 83/276 (30%)
Query: 12 QTLQPGPAVSLKCIASGNPTPDIGWTLDGFELPTNNRFVIGQFVSGHGDVISHVNISHVT 71
+ V +C A+GNPTP I W +G E +R + ++ + V
Sbjct: 133 LAVPAANTVRFRCPAAGNPTPSISWLKNGREFRGEHRIGGIKLRHQQWSLV----MESVV 188
Query: 72 VEDGGEYACVAENRAGTCEITPYDSGPYLIAWFKDGRQIPGRTSSTSLVINPVGREDRGI 131
D G Y CV EN+ G+ + +L + + R
Sbjct: 189 PSDRGNYTCVVENKFGSIR------------------------QTYTLDV--LERSPHRP 222
Query: 132 YQCIARRSDGDVAQGSAELQLGGLPYVRLIPKVTAIDGEGLSIKCPVAGYPIEEVHWEKV 191
++ GS + C V + W K
Sbjct: 223 ILQAGLPANQTAVLGSD-----------------------VEFHCKVYSDAQPHIQWLK- 258
Query: 192 PPKIESFAFPFDGLPEGARTRVICGVTHGDPPLTIRWLKDGKPLSPRFPVNVSDL-DSFS 250
+ DG P ++ D
Sbjct: 259 ----------------------------HVEVNGSKVGPDGTPYVTVLKTAGANTTDKEL 290
Query: 251 SLLSINSVSAAHSGEYTCVASNTAAQARYSSKLQVK 286
+LS+++V+ +GEYTC+A N+ + +S+ L V
Sbjct: 291 EVLSLHNVTFEDAGEYTCLAGNSIGFSHHSAWLVVL 326
Score = 69.3 bits (169), Expect = 1e-13
Identities = 21/99 (21%), Positives = 35/99 (35%), Gaps = 8/99 (8%)
Query: 2 PPILTYSFIEQTLQPGPAVSLKCIASGNPTPDIGWT----LDGFELPTNNRFVIGQFVSG 57
P + QT G V C + P I W ++G ++ + + +
Sbjct: 222 PILQAGLPANQTAVLGSDVEFHCKVYSDAQPHIQWLKHVEVNGSKVGPDGTPYVTVLKTA 281
Query: 58 HGDVISHVN----ISHVTVEDGGEYACVAENRAGTCEIT 92
+ + +VT ED GEY C+A N G +
Sbjct: 282 GANTTDKELEVLSLHNVTFEDAGEYTCLAGNSIGFSHHS 320
>2va4_A NCAM2, N-CAM 2, neural cell adhesion molecule 2; transmembrane,
phosphorylation, immunoglobulin domain, membrane,
glycoprotein; HET: NAG; 1.9A {Homo sapiens} PDB: 2xy1_A*
Length = 192
Score = 104 bits (262), Expect = 1e-27
Identities = 43/192 (22%), Positives = 70/192 (36%), Gaps = 41/192 (21%)
Query: 101 IAWFKDGRQIPG------RTSSTSLVINPVGREDRGIYQCIARRSDGDVAQGSAELQLGG 154
I+WF++G+ I + S+T L + + D G Y C A G + A LQ+
Sbjct: 36 ISWFRNGKLIEENEKYILKGSNTELTVRNIINSDGGPYVCRATNKAG-EDEKQAFLQVFV 94
Query: 155 LPYVRLIPKVTAIDGEGLSIKCPVAGYPIEEVHWEKVPPKIESFAFPFDGLPEGARTRVI 214
P++ + T + +++ C G PI E+ W++ DG
Sbjct: 95 QPHIIQLKNETTYENGQVTLVCDAEGEPIPEITWKR----------AVDGFTF------- 137
Query: 215 CGVTHGDPPLTIRWLKDGKPLSPRFPVNVSDLDSFSSLLSINSVSAAHSGEYTCVASNTA 274
+ K L R V SS L I V + SG Y C A++
Sbjct: 138 --------------TEGDKSLDGRIEV---KGQHGSSSLHIKDVKLSDSGRYDCEAASRI 180
Query: 275 AQARYSSKLQVK 286
+ S L ++
Sbjct: 181 GGHQKSMYLDIE 192
Score = 98.0 bits (244), Expect = 5e-25
Identities = 42/195 (21%), Positives = 62/195 (31%), Gaps = 53/195 (27%)
Query: 2 PPILTYSFIEQTLQPGPAVSLKCIASGNPTPDIGWTLDGFELPTNNRFVIGQFVSGHGDV 61
+ T + G ++ C ASG+P P I W +G + N ++++ G
Sbjct: 4 AISMPQKSFNATAERGEEMTFSCRASGSPEPAISWFRNGKLIEENEKYIL----KGSNTE 59
Query: 62 ISHVNISHVTVEDGGEYACVAENRAGTCE-------------ITPYDSGPYL-------- 100
+ + ++ DGG Y C A N+AG E I + Y
Sbjct: 60 L---TVRNIINSDGGPYVCRATNKAGEDEKQAFLQVFVQPHIIQLKNETTYENGQVTLVC 116
Query: 101 ---------IAWFKDGRQIP---------------GRTSSTSLVINPVGREDRGIYQCIA 136
I W + G+ S+SL I V D G Y C A
Sbjct: 117 DAEGEPIPEITWKRAVDGFTFTEGDKSLDGRIEVKGQHGSSSLHIKDVKLSDSGRYDCEA 176
Query: 137 RRSDGDVAQGSAELQ 151
S Q S L
Sbjct: 177 -ASRIGGHQKSMYLD 190
Score = 78.3 bits (193), Expect = 8e-18
Identities = 27/92 (29%), Positives = 41/92 (44%), Gaps = 3/92 (3%)
Query: 1 TPPILTYSFIEQTLQPGPAVSLKCIASGNPTPDIGWT--LDGFELPTNNRFVIGQFVSGH 58
P + E T + G V+L C A G P P+I W +DGF ++ + G+
Sbjct: 94 VQPHIIQLKNETTYENGQ-VTLVCDAEGEPIPEITWKRAVDGFTFTEGDKSLDGRIEVKG 152
Query: 59 GDVISHVNISHVTVEDGGEYACVAENRAGTCE 90
S ++I V + D G Y C A +R G +
Sbjct: 153 QHGSSSLHIKDVKLSDSGRYDCEAASRIGGHQ 184
Score = 69.8 bits (171), Expect = 1e-14
Identities = 22/98 (22%), Positives = 41/98 (41%), Gaps = 9/98 (9%)
Query: 192 PPKIESFAFPFD-GLPEGARTRVICGVTHGDPPLTIRWLKDGKPL--SPRFPVNVSDLDS 248
P I F+ G C + G P I W ++GK + + ++ + S+
Sbjct: 2 MPAISMPQKSFNATAERGEEMTFSCRAS-GSPEPAISWFRNGKLIEENEKYILKGSN--- 57
Query: 249 FSSLLSINSVSAAHSGEYTCVASNTAAQARYSSKLQVK 286
+ L++ ++ + G Y C A+N A + + LQV
Sbjct: 58 --TELTVRNIINSDGGPYVCRATNKAGEDEKQAFLQVF 93
>2j8h_A Titin, connectin; cardiomyopathy, nuclear protein,
serine/threonine-protein KI LIMB-girdle muscular
dystrophy, phosphorylation; 1.99A {Homo sapiens} PDB:
2j8o_A 2ill_A
Length = 197
Score = 104 bits (262), Expect = 1e-27
Identities = 49/291 (16%), Positives = 77/291 (26%), Gaps = 104/291 (35%)
Query: 2 PPILTYSFIEQTLQPGPAVSLKCIASGNPTPDIGWTLDGFELPTNNRFVIGQFVSGHGDV 61
P ++ +L C +G+P P + W G E+ +
Sbjct: 4 APHFKEELRNLNVRYQSNATLVCKVTGHPKPIVKWYRQGKEIIADGLKYR---------- 53
Query: 62 ISHVNISHVTVEDGGEYACVAENRAGTCEITPYDSGPYLIAWFKDGRQIPGRTSSTSLVI 121
+ GG + L+I
Sbjct: 54 --------IQEFKGGYH---------------------------------------QLII 66
Query: 122 NPVGREDRGIYQCIARRSDGDVAQGSAELQLGGLP------YVRLIPKVTAIDGEGLSIK 175
V +D +YQ A G G+A L++ + + V A+ GE +SIK
Sbjct: 67 ASVTDDDATVYQVRATNQGG-SVSGTASLEVEVPAKIHLPKTLEGMGAVHALRGEVVSIK 125
Query: 176 CPVAGYPIEEVHWEKVPPKIESFAFPFDGLPEGARTRVICGVTHGDPPLTIRWLKDGKPL 235
P +G P P I W K +
Sbjct: 126 IPFSGKP---------------------------------------DP-VITWQKGQDLI 145
Query: 236 SPRFPVNVSDLDSFSSLLSINSVSAAHSGEYTCVASNTAAQARYSSKLQVK 286
V SF+SL+ N V +G Y A N + + +L V
Sbjct: 146 DNNGHYQVIVTRSFTSLVFPNGVERKDAGFYVVCAKNRFGIDQKTVELDVA 196
Score = 75.1 bits (185), Expect = 2e-16
Identities = 23/92 (25%), Positives = 31/92 (33%), Gaps = 4/92 (4%)
Query: 1 TPPILTYSFIEQTLQPGPAVSLKCIASGNPTPDIGWTLDGFELPTNNRFVIGQFVSGHGD 60
P G VS+K SG P P I W + N + +
Sbjct: 103 HLPKTLEGMGAVHALRGEVVSIKIPFSGKPDPVITWQKGQDLIDNNGHYQV----IVTRS 158
Query: 61 VISHVNISHVTVEDGGEYACVAENRAGTCEIT 92
S V + V +D G Y A+NR G + T
Sbjct: 159 FTSLVFPNGVERKDAGFYVVCAKNRFGIDQKT 190
>1rhf_A Tyrosine-protein kinase receptor TYRO3; AXL/TYRO3 family, cellular
adhesion, ligand-independent DIME mutational analysis,
transferase; HET: EPE; 1.96A {Homo sapiens} SCOP:
b.1.1.1 b.1.1.4
Length = 182
Score = 103 bits (259), Expect = 2e-27
Identities = 39/187 (20%), Positives = 59/187 (31%), Gaps = 43/187 (22%)
Query: 2 PPILTYSFIEQTLQPGPAVSLKCIASGNPTPDIGWTLDGFELPTNNRFVIGQFVSGHGDV 61
L + ++ T+ G V L C G PDI W DG + ++ I
Sbjct: 2 GLKLMGAPVKLTVSQGQPVKLNCSVEGMEEPDIQWVKDGAVVQNLDQLYI---PVSEQHW 58
Query: 62 ISHVNISHVTVEDGGEYACVAENRAGT--------------------------------- 88
I +++ V D G Y C E+ T
Sbjct: 59 IGFLSLKSVERSDAGRYWCQVEDGGETEISQPVWLTVEGVPFFTVEPKDLAVPPNAPFQL 118
Query: 89 -CEIT--PYDSGPYLIAWFKDGRQIPGRTSSTSLVINPVGREDRGIYQCIARRSDGDVAQ 145
CE P P I W++ +I G S V+N G ++ C A G +
Sbjct: 119 SCEAVGPP---EPVTIVWWRGTTKIGGPAPSP-SVLNVTGVTQSTMFSCEAHNLKGLASS 174
Query: 146 GSAELQL 152
+A + L
Sbjct: 175 RTATVHL 181
Score = 89.9 bits (223), Expect = 4e-22
Identities = 33/199 (16%), Positives = 54/199 (27%), Gaps = 63/199 (31%)
Query: 101 IAWFKDGRQIP----------GRTSSTSLVINPVGREDRGIYQCIARRSDGDVAQGSAEL 150
I W KDG + + L + V R D G Y C L
Sbjct: 34 IQWVKDGAVVQNLDQLYIPVSEQHWIGFLSLKSVERSDAGRYWCQVEDGGETEISQPVWL 93
Query: 151 QLGGLPYVRLIPK-VTAIDGEGLSIKCPVAGYPIEEVHWEKVPPKIESFAFPFDGLPEGA 209
+ G+P+ + PK + + C G P
Sbjct: 94 TVEGVPFFTVEPKDLAVPPNAPFQLSCEAVGPP--------------------------- 126
Query: 210 RTRVICGVTHGDPPLTIRWLKDGKPLSPRFPVNVSDLDSFSSLLSINSVSAAHSGEYTCV 269
P+TI W + + P S +N S ++C
Sbjct: 127 ------------EPVTIVWWRGTTKIGGPAP----------SPSVLNVTGVTQSTMFSCE 164
Query: 270 ASNTA--AQARYSSKLQVK 286
A N A +R ++ + ++
Sbjct: 165 AHNLKGLASSR-TATVHLQ 182
Score = 62.5 bits (152), Expect = 5e-12
Identities = 18/82 (21%), Positives = 34/82 (41%), Gaps = 3/82 (3%)
Query: 207 EGARTRVICGVTHGDPPLTIRWLKDGKPLSPRFPVNVSDLDS-FSSLLSINSVSAAHSGE 265
+G ++ C V G I+W+KDG + + + + + LS+ SV + +G
Sbjct: 16 QGQPVKLNCSVE-GMEEPDIQWVKDGAVVQNLDQLYIPVSEQHWIGFLSLKSVERSDAGR 74
Query: 266 YTCVASNTA-AQARYSSKLQVK 286
Y C + + L V+
Sbjct: 75 YWCQVEDGGETEISQPVWLTVE 96
>3oq3_B IFN-alpha/beta binding protein C12R; mousepox virus, moscow strain,
cytokine decoy RE virus/viral protein, type-1
interferon, soluble A/B-IFNR; HET: EPE; 2.10A
{Ectromelia virus}
Length = 329
Score = 107 bits (267), Expect = 3e-27
Identities = 48/348 (13%), Positives = 83/348 (23%), Gaps = 110/348 (31%)
Query: 2 PPILTYSFIEQTLQPGPAVSLKC---------IASGNPTPDIGWTLDGFELPTNNRFVIG 52
P + + G S KC + + W G NR V
Sbjct: 29 PSCMFGGTMNDMAALGEPFSAKCPPIEDSLLSHRYNDKDNVVNWEKIGKTRRPLNRRV-- 86
Query: 53 QFVSGHGDVISHVNISHVTVED-GGEYACVAENRAGT----------------------- 88
+ I++ T D Y C + G
Sbjct: 87 -----KNGDLW---IANYTSNDSHRRYLCTVTTKNGDCVQGIVRSHIRKPPSCIPETYEL 138
Query: 89 -----------CEITPYDSGPYLIAWFKDGRQIPGR-----TSSTSLVINPVGREDRGIY 132
C I I W+K+ +++ S +L+I+ ED G Y
Sbjct: 139 GTHDKYGIDLYCGILYAKHYNN-ITWYKNNQELIIDGTKYSQSGQNLIIHNPELEDSGRY 197
Query: 133 QCIARRSDGDV-----AQGSAELQLGGLPY----VRLIPKVTAIDGEGLSIKCPVAGYPI 183
C D + L + + L PK+ GE +I C +
Sbjct: 198 DCYVHYDDVRIKNDIVVSRCKILTVIPSQDHRFKLILDPKINVTIGEPANITCTAVSTSL 257
Query: 184 EEVHWEKVPPKIESFAFPFDGLPEGARTRVICGVTHGDPPLTIRWLKDGKPLSP----RF 239
+ I W + +
Sbjct: 258 ------------------------------------LVDDVLIDWENPSGWIIGLDFGVY 281
Query: 240 PVNVSDLDSFSSLLSINSVSAAHSGE-YTCVASNTAAQARYSSKLQVK 286
+ S + L +V+ + G YTC N ++ + ++
Sbjct: 282 SILTSSGGITEATLYFENVTEEYIGNTYTCRGHNYYFDKTLTTTVVLE 329
>1f97_A Junction adhesion molecule; immunoglobulin superfamily,
beta-sandwich fold, cell adhesion; 2.50A {Mus musculus}
SCOP: b.1.1.1 b.1.1.4
Length = 212
Score = 102 bits (255), Expect = 2e-26
Identities = 48/283 (16%), Positives = 71/283 (25%), Gaps = 95/283 (33%)
Query: 11 EQTLQPGPAVSLKCIASGNPTPDIGWTLDGFELPTNNRFVIGQFVSGHGDVISHVNISHV 70
+ + ++ L C SG +P + W + I+ V
Sbjct: 10 DVQVPENESIKLTCTYSGFSSPRVEWKFVQGSTTALVCY---------NSQITAPYADRV 60
Query: 71 TVEDGGEYACVAENRAGTCEITPYDSGPYLIAWFKDGRQIPGRTSSTSLVINPVGREDRG 130
T + + V R+D G
Sbjct: 61 TFSSS------------------------------------------GITFSSVTRKDNG 78
Query: 131 IYQCIARRSDGDVAQGSAELQLGGLPYVRLIPKVTAIDGEGLSIKCPVAGYPIEEVHWEK 190
Y C+ G G + L V
Sbjct: 79 EYTCMVSEEGGQ-NYGEVSIHL--------------------------------TVL--- 102
Query: 191 VPPKIESFAFPFDGLPEGARTRVICGVTHGDPPLTIRWLKDGKPLSP-------RFPVNV 243
VPP + + P + G R + C G PP W KDG + F +
Sbjct: 103 VPPSKPTISVPS-SVTIGNRAVLTCSEHDGSPPSEYSWFKDGISMLTADAKKTRAFMNSS 161
Query: 244 SDLDSFSSLLSINSVSAAHSGEYTCVASNTAAQARYSSKLQVK 286
+D S L + V+A SGEY C A N A S +
Sbjct: 162 FTIDPKSGDLIFDPVTAFDSGEYYCQAQNGYGTAMRSEAAHMD 204
Score = 64.2 bits (156), Expect = 2e-12
Identities = 23/91 (25%), Positives = 34/91 (37%), Gaps = 4/91 (4%)
Query: 2 PPILTYSFIEQTLQPGPAVSLKCIA-SGNPTPDIGWTLDGFELPTNNRFVIGQFVSGHGD 60
PP + ++ G L C G+P + W DG + T + F++
Sbjct: 104 PPSKPTISVPSSVTIGNRAVLTCSEHDGSPPSEYSWFKDGISMLTADAKKTRAFMNSSFT 163
Query: 61 VISHV---NISHVTVEDGGEYACVAENRAGT 88
+ VT D GEY C A+N GT
Sbjct: 164 IDPKSGDLIFDPVTAFDSGEYYCQAQNGYGT 194
>4dep_C Interleukin-1 receptor accessory protein; B-trefoil,
immunoglobulin, immune system, extracellular; HET: NAG;
3.10A {Homo sapiens} PDB: 3o4o_B*
Length = 349
Score = 104 bits (260), Expect = 3e-26
Identities = 45/332 (13%), Positives = 85/332 (25%), Gaps = 92/332 (27%)
Query: 16 PGPAVSLKCIASGNPTPDIGWTLDGFELPT---NNRFVIGQFVSGHGDVISHVNISHVTV 72
+ + + + W + N + +S DV+ +
Sbjct: 32 FEHFLKFNYSTAHSAGLTLIWYWTRQDRDLEEPINFRLPENRISKEKDVL---WFRPTLL 88
Query: 73 EDGGEYACVAENRAGTCEIT---------------------------------------- 92
D G Y C+ N ++
Sbjct: 89 NDTGNYTCMLRNTTYCSKVAFPLEVVQKDSCFNSPMKLPVHKLYIEYGIQRITCPNVDGY 148
Query: 93 PYDSGPYLIAWFKDGRQIPGR----TSSTSLVINPVGREDRGIYQCIARRSD-GDVAQGS 147
S I W+ +I +L + G Y C+ + G +
Sbjct: 149 FPSSVKPTITWYMGCYKIQNFNNVIPEGMNLSFLIALISNNGNYTCVVTYPENGRTFHLT 208
Query: 148 AELQLGGLPYVRLIPKVTAIDGEGLSIKCPVAGYPIEEVHWEKVPPKIESFAFPFDGLPE 207
L + V PK PV P + V +E
Sbjct: 209 RTLTV----KVVGSPKNAVP---------PVIHSPNDHVVYE---------------KEP 240
Query: 208 GARTRVICGVTH---GDPPLTIRWLKDGKPL---------SPRFPVNVSDLDSFSSLLSI 255
G + C V D + W DGK + + ++ ++ + +LSI
Sbjct: 241 GEELLIPCTVYFSFLMDSRNEVWWTIDGKKPDDITIDVTINESISHSRTEDETRTQILSI 300
Query: 256 NSVSAAH-SGEYTCVASNTAAQARYSSKLQVK 286
V++ Y C A + + ++K++ K
Sbjct: 301 KKVTSEDLKRSYVCHARSAKGEVAKAAKVKQK 332
Score = 75.7 bits (185), Expect = 7e-16
Identities = 30/235 (12%), Positives = 56/235 (23%), Gaps = 63/235 (26%)
Query: 67 ISHVTVEDGGEYA---CVAENRAGTCEITPYDSGPYLIAWFKDGRQIPGRT--------- 114
+ + V + E A C + S + W+ +
Sbjct: 14 MRQIQVFED-EPARIKCPLFEHFLKFNYSTAHSAGLTLIWYWTRQDRDLEEPINFRLPEN 72
Query: 115 ----SSTSLVINPVGREDRGIYQCIARRSDGDVAQGSAELQL-----GGLPYVRLIPKVT 165
L P D G Y C+ R + ++ + L++ ++L
Sbjct: 73 RISKEKDVLWFRPTLLNDTGNYTCMLRNTTYC-SKVAFPLEVVQKDSCFNSPMKLPVHKL 131
Query: 166 AIDGEGLSIKCPVAGYPIEEVHWEKVPPKIESFAFPFDGLPEGARTRVICGVTHGDPPLT 225
I+ I CP ++ + T
Sbjct: 132 YIEYGIQRITCPN----------------VDGYF-------------------PSSVKPT 156
Query: 226 IRWLKDGKPLSPRFPVNVSDLDSFSSLLSINSVSAAHSGEYTCVASNTAAQARYS 280
I W + V LS +++G YTCV + +
Sbjct: 157 ITWYMGCYKIQNFNNVIPEG-----MNLSFLIALISNNGNYTCVVTYPENGRTFH 206
Score = 62.2 bits (150), Expect = 3e-11
Identities = 20/101 (19%), Positives = 35/101 (34%), Gaps = 12/101 (11%)
Query: 2 PPILTYSFIEQTL--QPGPAVSLKCIA----SGNPTPDIGWTLDG---FELPTNNRFVIG 52
PP++ +PG + + C + ++ WT+DG ++ +
Sbjct: 224 PPVIHSPNDHVVYEKEPGEELLIPCTVYFSFLMDSRNEVWWTIDGKKPDDITIDVTINES 283
Query: 53 QFVSGHGD--VISHVNISHVTVED-GGEYACVAENRAGTCE 90
S D ++I VT ED Y C A + G
Sbjct: 284 ISHSRTEDETRTQILSIKKVTSEDLKRSYVCHARSAKGEVA 324
Score = 61.8 bits (149), Expect = 4e-11
Identities = 20/133 (15%), Positives = 41/133 (30%), Gaps = 33/133 (24%)
Query: 158 VRLIPKVTAIDGEGLSIKCPVAGYPIEEVHWEKVPPKIESFAFPFDGLPEGARTRVICGV 217
+ + ++ + E IKCP+ + ++
Sbjct: 11 LDTMRQIQVFEDEPARIKCPLFEHFLK-----------------------------FNYS 41
Query: 218 THGDPPLTIRWLKDGKPLSPRFPVNVSDLDS----FSSLLSINSVSAAHSGEYTCVASNT 273
T LT+ W + P+N ++ +L +G YTC+ NT
Sbjct: 42 TAHSAGLTLIWYWTRQDRDLEEPINFRLPENRISKEKDVLWFRPTLLNDTGNYTCMLRNT 101
Query: 274 AAQARYSSKLQVK 286
++ + L+V
Sbjct: 102 TYCSKVAFPLEVV 114
>2a38_A Titin; Z1Z2, structural protein; 2.00A {Homo sapiens} PDB: 1ya5_A
2f8v_A
Length = 194
Score = 100 bits (252), Expect = 4e-26
Identities = 50/287 (17%), Positives = 82/287 (28%), Gaps = 99/287 (34%)
Query: 2 PPILTYSFIEQTLQPGPAVSLKCIASGNPTPDIGWTLDGFELPTNNRFVIGQFVSGHGDV 61
P T + G + + SG P P++ W DG + T+ +
Sbjct: 5 APTFTQPLQSVVVLEGSTATFEAHISGFPVPEVSWFRDGQVISTSTLPGV---------- 54
Query: 62 ISHVNISHVTVEDGGEYACVAENRAGTCEITPYDSGPYLIAWFKDGRQIPGRTSSTSLVI 121
++ DG L I
Sbjct: 55 -------QISFSDG----------------------------------------RAKLTI 67
Query: 122 NPVGREDRGIYQCIARRSDGDVAQGSAELQLGGLPYVRLIPKVTAIDGEGLSIKCPVAGY 181
V + + G Y A G A +AEL
Sbjct: 68 PAVTKANSGRYSLKATNGSG-QATSTAELL------------------------------ 96
Query: 182 PIEEVHWEKVPPKIESFAFPFDGL--PEGARTRVICGVTHGDPPLTIRWLKDGKPLSPRF 239
V E PP F + +G++ R+ VT G P +++ +DG +
Sbjct: 97 ----VKAETAPPN---FVQRLQSMTVRQGSQVRLQVRVT-GIPTPVVKFYRDGAEIQSSL 148
Query: 240 PVNVSDLDSFSSLLSINSVSAAHSGEYTCVASNTAAQARYSSKLQVK 286
+S SLL I SG Y+ A+N+ +A +++L V+
Sbjct: 149 DFQISQEGDLYSLL-IAEAYPEDSGTYSVNATNSVGRATSTAELLVQ 194
Score = 83.6 bits (207), Expect = 1e-19
Identities = 27/90 (30%), Positives = 40/90 (44%), Gaps = 5/90 (5%)
Query: 1 TPPILTYSFIEQTLQPGPAVSLKCIASGNPTPDIGWTLDGFELPTNNRFVIGQFVSGHGD 60
PP T++ G V L+ +G PTP + + DG E+ ++ F I Q GD
Sbjct: 102 APPNFVQRLQSMTVRQGSQVRLQVRVTGIPTPVVKFYRDGAEIQSSLDFQISQ----EGD 157
Query: 61 VISHVNISHVTVEDGGEYACVAENRAGTCE 90
+ S + I+ ED G Y+ A N G
Sbjct: 158 LYSLL-IAEAYPEDSGTYSVNATNSVGRAT 186
>2wv3_A Neuroplastin; igcam, membrane, glycoprotein, cell membrane, cell
adhesion, transmembrane, disulfide bond, alternative
splicing; HET: NAG; 1.95A {Rattus norvegicus}
Length = 190
Score = 100 bits (250), Expect = 6e-26
Identities = 35/208 (16%), Positives = 64/208 (30%), Gaps = 51/208 (24%)
Query: 88 TCEITPYDSGPYLIAWFKDGRQIPG---RTSSTSLVINPVGREDRGIYQCIARRSDGDVA 144
C +T W K+G ++ S+ IN ED G Y C+
Sbjct: 24 QCNLTSSSHTLMYSYWTKNGVELTATRKNASNMEYRINKPRAEDSGEYHCVYHFVSA--P 81
Query: 145 QGSAELQLGGLPYVRLIPK-VTAIDGEGLSIKCPVAGYPIEEVHWEKVPPKIESFAFPFD 203
+ +A +++ P + + +G+ + C GYP P
Sbjct: 82 KANATIEVKAAPDITGHKRSENKNEGQDAMMYCKSVGYP---------HP---------- 122
Query: 204 GLPEGARTRVICGVTHGDPPLTIRWLKDGKPLSPRFP-----VNVSDLDSFSSLLSINSV 258
W K + + + ++++ L +N
Sbjct: 123 ---------------------EWMWRKKENGVFEEISNSSGRFFIINKENYTELNIVNLQ 161
Query: 259 SAAHSGEYTCVASNTAAQARYSSKLQVK 286
GEY C A+N+ A S+ L+V+
Sbjct: 162 ITEDPGEYECNATNSIGSASVSTVLRVR 189
Score = 90.3 bits (224), Expect = 4e-22
Identities = 21/88 (23%), Positives = 36/88 (40%), Gaps = 1/88 (1%)
Query: 2 PPILTYSFIEQTLQPGPAVSLKCIASGNPTPDIGWTLDGFELPTNNRFVIGQFVSGHGDV 61
P +T + G + C + G P P+ W + G+F + +
Sbjct: 92 APDITGHKRSENKNEGQDAMMYCKSVGYPHPEWMWRKKENGVFEEISNSSGRFFIINKEN 151
Query: 62 ISHVNISHVTV-EDGGEYACVAENRAGT 88
+ +NI ++ + ED GEY C A N G+
Sbjct: 152 YTELNIVNLQITEDPGEYECNATNSIGS 179
Score = 73.0 bits (179), Expect = 9e-16
Identities = 36/200 (18%), Positives = 52/200 (26%), Gaps = 65/200 (32%)
Query: 1 TPPILTYSFIEQTLQPGPAVSLKCIASGNPTPDIG--WTLDGFELPTNNRFVIGQFVSGH 58
P + S V+L+C + + + WT +G EL +
Sbjct: 2 NEPRIVTSEEVIIRDSLLPVTLQCNLTSSSHTLMYSYWTKNGVELTATRKNASN------ 55
Query: 59 GDVISHVNISHVTVEDGGEYACVAENRAG------------------------------- 87
I+ ED GEY CV +
Sbjct: 56 ----MEYRINKPRAEDSGEYHCVYHFVSAPKANATIEVKAAPDITGHKRSENKNEGQDAM 111
Query: 88 -TCEIT--PYDSGPYLIAWFKDGRQIP-------GR-------TSSTSLVINPVGREDRG 130
C+ P W K + GR + ++N ED G
Sbjct: 112 MYCKSVGYP----HPEWMWRKKENGVFEEISNSSGRFFIINKENYTELNIVNLQITEDPG 167
Query: 131 IYQCIARRSDGDVAQGSAEL 150
Y+C A S G A S L
Sbjct: 168 EYECNATNSIG-SASVSTVL 186
Score = 65.6 bits (160), Expect = 4e-13
Identities = 19/98 (19%), Positives = 38/98 (38%), Gaps = 9/98 (9%)
Query: 190 KVPPKIESFAFPFDGLPEGARTRVICGVT-HGDPPLTIRWLKDGKPLSPRFPVNVSDLDS 248
+ P+I + + C +T + W K+G L+ + ++
Sbjct: 1 QNEPRIVTSEEVIIRD-SLLPVTLQCNLTSSSHTLMYSYWTKNGVELTA------TRKNA 53
Query: 249 FSSLLSINSVSAAHSGEYTCVASNTAAQARYSSKLQVK 286
+ IN A SGEY CV + + + ++ ++VK
Sbjct: 54 SNMEYRINKPRAEDSGEYHCVY-HFVSAPKANATIEVK 90
>3mjg_X Beta-type platelet-derived growth factor receptor; protein-protein
complex, growth factor-receptor complex, TRA hormone
complex; HET: NDG NAG; 2.30A {Homo sapiens}
Length = 289
Score = 102 bits (254), Expect = 1e-25
Identities = 41/320 (12%), Positives = 74/320 (23%), Gaps = 95/320 (29%)
Query: 11 EQTLQPGPAVSLKCIASGNPTPDIGWTLDGFELPTNNRFVIGQFVSGHGDVISHVNISHV 70
E L L C S + W E P + G S + ++++
Sbjct: 9 ELVLNVSSTFVLTCSGSAP----VVWERMSQEPPQEMA------KAQDGTFSSVLTLTNL 58
Query: 71 TVEDGGEYACVAENRAGTCEITPYD----------------------------------- 95
T D GEY C + G
Sbjct: 59 TGLDTGEYFCTHNDSRGLETDERKRLYIFVPDPTVGFLPNDAEELFIFLTEITEITIPCR 118
Query: 96 -SGPYL-IAWFKDGRQIPGRTSSTSLVINPVGREDRGIYQCIARRSDGDVAQGSAELQLG 153
+ P L + + + G + Y C D +V + +
Sbjct: 119 VTDPQLVVTLHEKKGDVALPVPY-DHQRGFSGIFEDRSYICKTTIGDREVDSDAYYVYRL 177
Query: 154 GLPYVRLI---PKVTAIDGEGLSIKCPVAGYPIEEVHWEKVPPKIESFAFPFDGLPEGAR 210
+ + + + GE +++ C V
Sbjct: 178 QVSSINVSVNAVQTVVRQGENITLMCIV-------------------------------- 205
Query: 211 TRVICGVTHGDPPLTIRWLKDGK----PLSPRFPVNVSDLDSFSSLLSINSVSAAHSGEY 266
G+ + W K + P + S+L I S SG Y
Sbjct: 206 --------IGNEVVNFEWTYPRKESGRLVEPVTDFLLDMPYHIRSILHIPSAELEDSGTY 257
Query: 267 TCVASNTAAQARYSSKLQVK 286
TC + + + + +
Sbjct: 258 TCNVTESVNDHQDEKAINIT 277
Score = 68.6 bits (167), Expect = 1e-13
Identities = 17/88 (19%), Positives = 33/88 (37%)
Query: 1 TPPILTYSFIEQTLQPGPAVSLKCIASGNPTPDIGWTLDGFELPTNNRFVIGQFVSGHGD 60
+ ++ + ++ ++ G ++L CI GN + WT E V +
Sbjct: 180 SSINVSVNAVQTVVRQGENITLMCIVIGNEVVNFEWTYPRKESGRLVEPVTDFLLDMPYH 239
Query: 61 VISHVNISHVTVEDGGEYACVAENRAGT 88
+ S ++I +ED G Y C
Sbjct: 240 IRSILHIPSAELEDSGTYTCNVTESVND 267
>2v9r_A Roundabout homolog 1; proto-oncogene, differentiation,
phosphorylation, disease MU neuronal development,
immunoglobulin domain, chemotaxis; 2.00A {Homo sapiens}
PDB: 2v9q_A
Length = 212
Score = 100 bits (250), Expect = 1e-25
Identities = 40/191 (20%), Positives = 58/191 (30%), Gaps = 43/191 (22%)
Query: 2 PPILTYSFIEQTLQPGPAVSLKCIASGNPTPDIGWTLDGFELPTNNRFVIGQF-VSGHGD 60
PP + + + G +L C A G PTP I W G + T+ + G
Sbjct: 9 PPRIVEHPSDLIVSKGEPATLNCKAEGRPTPTIEWYKGGERVETDKDDPRSHRMLLPSGS 68
Query: 61 V-ISHVNISHVTVEDGGEYACVAENRAGT------------------------------- 88
+ + + D G Y CVA N G
Sbjct: 69 LFFLRIVHGRKSRPDEGVYVCVARNYLGEAVSHDASLEVAILRDDFRQNPSDVMVAVGEP 128
Query: 89 ----CEITPYDSGPYLIAWFKDGRQIPGR-----TSSTSLVINPVGREDRGIYQCIARRS 139
C+ P I+W KDG + + L+I + D G Y C+
Sbjct: 129 AVMECQP-PRGHPEPTISWKKDGSPLDDKDERITIRGGKLMITYTRKSDAGKYVCVGTNM 187
Query: 140 DGDVAQGSAEL 150
G+ AEL
Sbjct: 188 VGERESEVAEL 198
Score = 56.0 bits (135), Expect = 1e-09
Identities = 20/86 (23%), Positives = 28/86 (32%), Gaps = 8/86 (9%)
Query: 207 EGARTRVICGVTHGDPPLTIRWLKDGKPLSPRFPVN------VSDLDSFSSLLSINSVSA 260
+G + C G P TI W K G+ + + F + S
Sbjct: 23 KGEPATLNCKAE-GRPTPTIEWYKGGERVETDKDDPRSHRMLLPSGSLFFLRIVHGRKSR 81
Query: 261 AHSGEYTCVASNTAAQARYSS-KLQV 285
G Y CVA N +A L+V
Sbjct: 82 PDEGVYVCVARNYLGEAVSHDASLEV 107
>2nzi_A Titin; IG-domain, FNIII-domain, transferase; 2.90A {Homo sapiens}
Length = 305
Score = 101 bits (254), Expect = 2e-25
Identities = 46/250 (18%), Positives = 84/250 (33%), Gaps = 65/250 (26%)
Query: 2 PPILTYSFIEQTLQPGPAVSLKCIASGNPTPDIGWTLDGFELPTNN-RFVIGQFVSGHGD 60
P ++ +L C +G+P P + W G E+ + ++ I +F G+
Sbjct: 4 APHFKEELRNLNVRYQSNATLVCKVTGHPKPIVKWYRQGKEIIADGLKYRIQEFKGGYHQ 63
Query: 61 VISHVNISHVTVEDGGEYACVAENRAGTCEIT---------------------------- 92
+I I+ VT +D Y A N+ G+ T
Sbjct: 64 LI----IASVTDDDATVYQVRATNQGGSVSGTASLEVEVPAKIHLPKTLEGMGAVHALRG 119
Query: 93 -------PYDSGPYL-IAWFKDGRQIP---------GRTSSTSLVINPVGREDRGIYQCI 135
P+ P I W K I R+ ++ + N V R+D G Y
Sbjct: 120 EVVSIKIPFSGKPDPVITWQKGQDLIDNNGHYQVIVTRSFTSLVFPNGVERKDAGFYVVC 179
Query: 136 ARRSDGDVAQGSAELQLGGLPYVRLIPKVTAIDGEGLSIK---------CPVAGYPIE-- 184
A ++ + Q + EL + +P KV+ + + +++ + Y +E
Sbjct: 180 A-KNRFGIDQKTVELDVADVPDPPRGVKVSDVSRDSVNLTWTEPASDGGSKITNYIVEKC 238
Query: 185 ---EVHWEKV 191
W +V
Sbjct: 239 ATTAERWLRV 248
Score = 67.1 bits (164), Expect = 5e-13
Identities = 23/92 (25%), Positives = 31/92 (33%), Gaps = 4/92 (4%)
Query: 1 TPPILTYSFIEQTLQPGPAVSLKCIASGNPTPDIGWTLDGFELPTNNRFVIGQFVSGHGD 60
P G VS+K SG P P I W + N + + S
Sbjct: 103 HLPKTLEGMGAVHALRGEVVSIKIPFSGKPDPVITWQKGQDLIDNNGHYQVIVTRSFTSL 162
Query: 61 VISHVNISHVTVEDGGEYACVAENRAGTCEIT 92
V + V +D G Y A+NR G + T
Sbjct: 163 VF----PNGVERKDAGFYVVCAKNRFGIDQKT 190
Score = 59.8 bits (145), Expect = 1e-10
Identities = 17/81 (20%), Positives = 33/81 (40%), Gaps = 2/81 (2%)
Query: 207 EGARTRVICGVTHGDPPLTIRWLKDGKPLSPRFP-VNVSDLDSFSSLLSINSVSAAHSGE 265
+ ++C VT G P ++W + GK + + + L I SV+ +
Sbjct: 18 YQSNATLVCKVT-GHPKPIVKWYRQGKEIIADGLKYRIQEFKGGYHQLIIASVTDDDATV 76
Query: 266 YTCVASNTAAQARYSSKLQVK 286
Y A+N ++ L+V+
Sbjct: 77 YQVRATNQGGSVSGTASLEVE 97
>2vr9_A Roundabout 1, ROBO; immunoglobulin-like domain, AXON guidance, cell
adhesion, immunoglobulin domain; 3.2A {Drosophila
melanogaster} PDB: 2vra_A*
Length = 217
Score = 99.2 bits (247), Expect = 3e-25
Identities = 52/292 (17%), Positives = 78/292 (26%), Gaps = 101/292 (34%)
Query: 2 PPILTYSFIEQTLQPGPAVSLKCIASGNPTPDIGWTLDGFELPTNNRFVIGQFVSGHGDV 61
P + + ++ +L C G P P I W DG + TN +
Sbjct: 9 SPRIIEHPTDLVVKKNEPATLNCKVEGKPEPTIEWFKDGEPVSTNEK------------- 55
Query: 62 ISHVNISHVTVEDGGEYACVAENRAGTCEITPYDSGPYLIAWFKDGRQIPGRTSSTSLVI 121
V +DG + +
Sbjct: 56 ----KSHRVQFKDGALF--------------------------------------FYRTM 73
Query: 122 NPVGREDRGIYQCIARRSDGDVAQGSAELQLGGL-PYVRLIPK-VTAIDGEGLSIKCPVA 179
+D G Y C+A+ G A LQ+ L R+ PK GE ++C
Sbjct: 74 QGKKEQDGGEYWCVAKNRVGQAVSRHASLQIAVLRDDFRVEPKDTRVAKGETALLECGPP 133
Query: 180 GYPIEEVHWEKVPPKIESFAFPFDGLPEGARTRVICGVTHGDPPLTIRWLKDGKPLSPRF 239
G P T+ W+KDG PL
Sbjct: 134 ---------------------------------------KGIPEPTLIWIKDGVPLDDLK 154
Query: 240 PVNVSDLDSFSSL----LSINSVSAAHSGEYTCVASNTAAQARYSS-KLQVK 286
++ + L I++V G Y C+A N S KL V+
Sbjct: 155 AMSFGASSRVRIVDGGNLLISNVEPIDEGNYKCIAQNLVGTRESSYAKLIVQ 206
>2yd6_A PTPRD protein; hydrolase; HET: FLC; 1.35A {Homo sapiens} PDB:
2yd7_A 2yd2_A 2yd3_A 2yd4_A* 2yd8_A* 2yd5_A* 3pxh_A
Length = 212
Score = 98.7 bits (246), Expect = 4e-25
Identities = 59/292 (20%), Positives = 87/292 (29%), Gaps = 99/292 (33%)
Query: 1 TPPILTYSFIEQTLQPGPAVSLKCIASGNPTPDIGWTLDGFELPTNNRFVIGQFVSGHGD 60
TPP T + ++QT G S C A+G+P P I W G ++ VI +F G G
Sbjct: 5 TPPRFTRTPVDQTGVSGGVASFICQATGDPRPKIVWNKKGKKVSNQRFEVI-EFDDGSGS 63
Query: 61 VISHVNISHV-TVEDGGEYACVAENRAGTCEITPYDSGPYLIAWFKDGRQIPGRTSSTSL 119
V+ I + T D Y CVA N G ST L
Sbjct: 64 VL---RIQPLRTPRDEAIYECVASNNVGEIS------------------------VSTRL 96
Query: 120 VINPVGREDRGIYQCIARRSDGDVAQGSAELQLGGLPYVRLIPK-VTAIDGEGLSIKCPV 178
+ + R G P + + P+ ++ C
Sbjct: 97 TVLREDQIPR------------------------GFPTIDMGPQLKVVERTRTATMLCAA 132
Query: 179 AGYPIEEVHWEKVPPKIESFAFPFDGLPEGARTRVICGVTHGDPPLTIRWLKDGKPLSP- 237
+G P P I W KD P+
Sbjct: 133 SGNP---------DP-------------------------------EITWFKDFLPVDTS 152
Query: 238 --RFPVNVSDLDSFSSLLSINSVSAAHSGEYTCVASNTAAQARYSS-KLQVK 286
+ +S +L I + G+Y CVA+N+A + L V+
Sbjct: 153 NNNGRIKQLRSESIGALQ-IEQSEESDQGKYECVATNSAGTRYSAPANLYVR 203
Score = 68.3 bits (167), Expect = 7e-14
Identities = 30/104 (28%), Positives = 40/104 (38%), Gaps = 6/104 (5%)
Query: 184 EEVHWEKVPPKIESFAFPFDGLPEGARTRVICGVTHGDPPLTIRWLKDGKPLSPRFPVNV 243
E PP+ G+ G IC T GDP I W K GK +S + +
Sbjct: 1 ETGE---TPPRFTRTPVDQTGV-SGGVASFICQAT-GDPRPKIVWNKKGKKVSNQRFEVI 55
Query: 244 SDLDSFSSLLSINSVSAAH-SGEYTCVASNTAAQARYSSKLQVK 286
D S+L I + Y CVASN + S++L V
Sbjct: 56 EFDDGSGSVLRIQPLRTPRDEAIYECVASNNVGEISVSTRLTVL 99
>3rbs_A Myomesin-1; immunoglobulin C-SET domain, contractIle protein; 1.85A
{Homo sapiens}
Length = 207
Score = 97.3 bits (242), Expect = 1e-24
Identities = 33/284 (11%), Positives = 61/284 (21%), Gaps = 86/284 (30%)
Query: 8 SFIE-----QTLQPGPAVSLKCIASGNPTPDIGWTLDGFELPTNNRFVIGQFVSGHGDVI 62
F + + L+ G + + + + E+ ++ + G I
Sbjct: 4 PFTKSELAVEILEKGQVRFWMQAEKLSGNAKVNYIFNEKEIFEGPKYKM-HIDRNTG--I 60
Query: 63 SHVNISHVTVEDGGEYACVAENRAGTCEITPYDSGPYLIAWFKDGRQIPGRTSSTSLVIN 122
+ + + ED G Y ++ T T G K+
Sbjct: 61 IEMFMEKLQDEDEGTYTFQLQDGKATNHSTVVLVGDVFKKLQKEAEFQR----------- 109
Query: 123 PVGREDRGIYQCIARRSDGDVAQGSAELQLGGLPYVRLIPKVTAIDGEGLSIKCPVAGYP 182
E P+ + +KC VA
Sbjct: 110 -------------------------QEWIRKQGPHFVEYLSWEVTGECNVLLKCKVANIK 144
Query: 183 IEEVHWEKVPPKIESFAFPFDGLPEGARTRVICGVTHGDPPLTIRWLKDGKPLSPRFPVN 242
I W KD + +S
Sbjct: 145 ---------------------------------------KETHIVWYKDEREISVDEKH- 164
Query: 243 VSDLDSFSSLLSINSVSAAHSGEYTCVASNTAAQARYSSKLQVK 286
D L I S +G Y + + + + KL +
Sbjct: 165 --DFKDGICTLLITEFSKKDAGIYEVILKDDRGKDKSRLKLVDE 206
>2iep_A Muscle-specific kinase receptor; beta-sandwich, signaling
protein,transferase; 2.21A {Rattus norvegicus}
Length = 192
Score = 96.3 bits (240), Expect = 2e-24
Identities = 37/191 (19%), Positives = 59/191 (30%), Gaps = 51/191 (26%)
Query: 2 PPILTYSFIEQTLQPGPAVSLKCIASGNPTPDIGWTLDGFELPTNNRFVIGQFVSGHGDV 61
P++T + C P P+I WT + + + + +G +
Sbjct: 7 APVITTPLETVDALVEEVATFMCAVESYPQPEISWTRNKILIKLFDTRYS---IRENGQL 63
Query: 62 ISHVNISHVTVEDGGEYACVAENRAGT--------------------------------- 88
++ I V D G Y C A N G
Sbjct: 64 LT---ILSVEDSDDGIYCCTANNGVGGAVESCGALQVKMKPKITRPPINVKIIEGLKAVL 120
Query: 89 -CEIT--PYDSGPYLIAWFKDGRQIP--GR---TSSTSLVINPVGREDRGIYQCIARRSD 140
C P ++W K + R S SL I+ V +ED G Y+C+A+ S
Sbjct: 121 PCTTMGNP----KPSVSWIKGDSALRENSRIAVLESGSLRIHNVQKEDAGQYRCVAKNSL 176
Query: 141 GDVAQGSAELQ 151
G +L+
Sbjct: 177 GTAYSKLVKLE 187
Score = 91.7 bits (228), Expect = 1e-22
Identities = 42/195 (21%), Positives = 63/195 (32%), Gaps = 53/195 (27%)
Query: 101 IAWFKDGRQIPGRT-------SSTSLVINPVGREDRGIYQCIARRSDGDVAQGSAELQLG 153
I+W ++ I + L I V D GIY C A G + LQ+
Sbjct: 39 ISWTRNKILIKLFDTRYSIRENGQLLTILSVEDSDDGIYCCTANNGVGGAVESCGALQVK 98
Query: 154 GLPYVRLIPK-VTAIDGEGLSIKCPVAGYPIEEVHWEKVPPKIESFAFPFDGLPEGARTR 212
P + P V I+G + C G P P
Sbjct: 99 MKPKITRPPINVKIIEGLKAVLPCTTMGNP---------KP------------------- 130
Query: 213 VICGVTHGDPPLTIRWLKDGKPLSPRFPVNVSDLDSFSSLLSINSVSAAHSGEYTCVASN 272
++ W+K L + V + S L I++V +G+Y CVA N
Sbjct: 131 ------------SVSWIKGDSALRENSRIAVLE----SGSLRIHNVQKEDAGQYRCVAKN 174
Query: 273 TAAQARYSS-KLQVK 286
+ A KL+V+
Sbjct: 175 SLGTAYSKLVKLEVE 189
Score = 61.3 bits (149), Expect = 1e-11
Identities = 22/86 (25%), Positives = 32/86 (37%), Gaps = 10/86 (11%)
Query: 205 LPEGARTRVICGVTHGDPPLTIRWLKDGKPL---SPRFPVNVSDLDSFSSLLSINSVSAA 261
+C V P I W ++ + R+ + + LL+I SV +
Sbjct: 19 ALVEEVATFMCAVE-SYPQPEISWTRNKILIKLFDTRYSIRENG-----QLLTILSVEDS 72
Query: 262 HSGEYTCVASNTAAQARYSS-KLQVK 286
G Y C A+N A S LQVK
Sbjct: 73 DDGIYCCTANNGVGGAVESCGALQVK 98
>3k0w_A Mucosa-associated lymphoid tissue lymphoma translocation protein 1,
isoform 2; hydrolase, immunoglobulin domain, nucleus,
protease; 2.80A {Homo sapiens}
Length = 218
Score = 96.5 bits (240), Expect = 3e-24
Identities = 35/174 (20%), Positives = 52/174 (29%), Gaps = 35/174 (20%)
Query: 101 IAWFKDGRQIPGRTSSTSLVINPVGREDRGIYQCIARRSDGDVAQGSAELQLGGLPYVRL 160
WFK ++IP +S L+ N V +D G Y C + ++L V
Sbjct: 50 YQWFKMNKEIPNGNTSE-LIFNAVHVKDAGFYVCRVNNNFTFEFSQWSQLD------VCD 102
Query: 161 IPKVTAIDGEGLSIKCPVAGYPIEEVHWEKVPPKIESFAFPFDGLPEGARTRVICGVTHG 220
IP+ +G+S L G+ + C G
Sbjct: 103 IPESFQRSVDGVSESKLQICVEPTSQK-----------------LMPGSTLVLQCVAV-G 144
Query: 221 DPPLTIRWLKDGKPLSPRFPVNVSDLDSFSSLLSINSVSAAHSGEYTCVASNTA 274
P +W K+ PL+ L + V H G Y C N
Sbjct: 145 SPIPHYQWFKNELPLTH----------ETKKLYMVPYVDLEHQGTYWCHVYNDR 188
Score = 68.4 bits (167), Expect = 7e-14
Identities = 18/88 (20%), Positives = 31/88 (35%), Gaps = 14/88 (15%)
Query: 1 TPPILTYSFIEQTLQPGPAVSLKCIASGNPTPDIGWTLDGFELPTNNRFVIGQFVSGHGD 60
+ + Q L PG + L+C+A G+P P W + L + +
Sbjct: 117 SKLQICVEPTSQKLMPGSTLVLQCVAVGSPIPHYQWFKNELPLTHETKKLY--------- 167
Query: 61 VISHVNISHVTVEDGGEYACVAENRAGT 88
+ +V +E G Y C N +
Sbjct: 168 -----MVPYVDLEHQGTYWCHVYNDRDS 190
Score = 59.9 bits (145), Expect = 7e-11
Identities = 19/82 (23%), Positives = 30/82 (36%), Gaps = 12/82 (14%)
Query: 206 PEGARTRVICGVTHGDPPLTIRWLKDGKPLSPRFPVNVSDLDSFSSLLSINSVSAAHSGE 265
G ++ C T G P + +W K K + + +S L N+V +G
Sbjct: 31 LAGQFVKLCCRAT-GHPFVQYQWFKMNKEIP----------NGNTSELIFNAVHVKDAGF 79
Query: 266 YTCVASNTAAQAR-YSSKLQVK 286
Y C +N S+L V
Sbjct: 80 YVCRVNNNFTFEFSQWSQLDVC 101
>1wio_A CD4, T-cell surface glycoprotein CD4; immunoglobulin fold,
transmembrane, MHC lipoprotein, polymorphism; 3.90A
{Homo sapiens} SCOP: b.1.1.1 b.1.1.1 b.1.1.3 b.1.1.3
PDB: 1wip_A 1wiq_A 3t0e_E
Length = 363
Score = 99.1 bits (246), Expect = 5e-24
Identities = 36/309 (11%), Positives = 73/309 (23%), Gaps = 62/309 (20%)
Query: 15 QPGPAVSLKCIASGNPTPDIGWTLDGFEL--------PTNNRFVIGQFVSGHGDVISHVN 66
+ G V L C AS + W T + + N
Sbjct: 7 KKGDTVELTCTASQKKSIQFHWKNSNQIKILGNQGSFLTKGPSKLNDRADSRRSLWDQGN 66
Query: 67 ----ISHVTVEDGGEYACVAENRAGTCEITPYD-----SGPYL----------------- 100
I ++ +ED Y C E++ ++ + L
Sbjct: 67 FPLIIKNLKIEDSDTYICEVEDQKEEVQLLVFGLTANSDTHLLQGQSLTLTLESPPGSSP 126
Query: 101 -IAWFKDGRQIPGRTSSTSLVINPVGREDRGIYQCIARRSDGDVAQGSAELQLGGLPYVR 159
+ + +L ++ + +D G + C + + ++ +
Sbjct: 127 SVQCRSPRGKN--IQGGKTLSVSQLELQDSGTWTCTVL-QNQKKVEFKIDIVVLAFQKAS 183
Query: 160 LIPKVTAIDGEGLSIKCPVAGYPIEEVHWEKVPPKIESFAFPFDGLPEGARTRVICGVTH 219
I V +GE + P+ EK+ E + +
Sbjct: 184 SI--VYKKEGEQVEFSFPL------AFTVEKLTGSGE-LWWQAERAS------------S 222
Query: 220 GDPPLTIRWLKDGKPL---SPRFPVNVSDLDSFSSLLSINSVSAAHSGEYTCVASNTAAQ 276
+T + + + + L A SG T +
Sbjct: 223 SKSWITFDLKNKEVSVKRVTQDPKLQMGKKLPLHLTLPQALPQYAGSGNLTLALEAKTGK 282
Query: 277 ARYSSKLQV 285
L V
Sbjct: 283 LHQEVNLVV 291
Score = 79.1 bits (194), Expect = 5e-17
Identities = 34/294 (11%), Positives = 73/294 (24%), Gaps = 58/294 (19%)
Query: 12 QTLQPGPAVSLKCIASGNPTPDIGWTLDGFELPTNNRFVIGQFVSGHGDVISHVNISHVT 71
L G +++L + +P + + + +++S +
Sbjct: 106 THLLQGQSLTLTLESPPGSSPSVQCRSPRGKNIQGGK---------------TLSVSQLE 150
Query: 72 VEDGGEYACVAENRAGTCEITPYDSGPYLIAWFKDGRQIPGRT--SSTSLVINPVGREDR 129
++D G + C E + G S L
Sbjct: 151 LQDSGTWTCTVLQNQKKVEFKIDIVVLAFQKASSIVYKKEGEQVEFSFPLAFTVEKLTGS 210
Query: 130 GIYQCIARRSDGDVAQGSAELQLGGLPYVRLIPKVTAIDGEGLSI--------------- 174
G A R+ + + +L+ + R+ G+ L +
Sbjct: 211 GELWWQAERASSSKSWITFDLKNKEVSVKRVTQDPKLQMGKKLPLHLTLPQALPQYAGSG 270
Query: 175 --KCPVAGYPIEEVHWEKVPPKIESFAFPFDGLPEGARTRVICGVTH-GDPPLTIRWLKD 231
++H E + + + C V P L + +
Sbjct: 271 NLTL-ALEAKTGKLHQEVNLVVMR---------ATQLQKNLTCEVWGPTSPKLMLSLKLE 320
Query: 232 GKPLSPRFPVNVSDLDSFSSLLSINSVSAAHSGEYTCVASNTAAQARYSSKLQV 285
K S V +G + C+ S+ + Q S ++V
Sbjct: 321 NKEAKV------------SKREKAVWVLNPEAGMWQCLLSD-SGQVLLESNIKV 361
Score = 63.7 bits (154), Expect = 8e-12
Identities = 19/166 (11%), Positives = 48/166 (28%), Gaps = 26/166 (15%)
Query: 8 SFIEQTLQPGPAVSLKCIASGNPTPDIGWTLDGFELPTNNRFVIGQF-VSGHGDVISHVN 66
+F + L + + + + I + L E+ + + + +
Sbjct: 201 AFTVEKLTGSGELWWQAERASSSKSWITFDLKNKEVSVKRVTQDPKLQMGKKLPLHLTLP 260
Query: 67 ISHVTVEDGGEYACVAENRAG--------------------TCEITPYDSGPYLIAWFKD 106
+ G E + G TCE+ S +++ +
Sbjct: 261 QALPQYAGSGNLTLALEAKTGKLHQEVNLVVMRATQLQKNLTCEVWGPTSPKLMLSLKLE 320
Query: 107 GRQIPGRTSSTSLVINPVGREDRGIYQCIARRSDGDVAQGSAELQL 152
++ S V + G++QC+ SD + +++
Sbjct: 321 NKEAK---VSKREKAVWVLNPEAGMWQCLL--SDSGQVLLESNIKV 361
Score = 43.6 bits (102), Expect = 3e-05
Identities = 15/115 (13%), Positives = 28/115 (24%), Gaps = 24/115 (20%)
Query: 164 VTAIDGEGLSIKCPVAGYPIEEVHWEKVPPKIESFAFPFDGLPEGARTRVICGVTHGDPP 223
V G+ + + C + + HW+
Sbjct: 4 VLGKKGDTVELTCTASQKKSIQFHWKNS------------------------NQIKILGN 39
Query: 224 LTIRWLKDGKPLSPRFPVNVSDLDSFSSLLSINSVSAAHSGEYTCVASNTAAQAR 278
K L+ R S D + L I ++ S Y C + + +
Sbjct: 40 QGSFLTKGPSKLNDRADSRRSLWDQGNFPLIIKNLKIEDSDTYICEVEDQKEEVQ 94
>2v5t_A NCAM2, N-CAM 2, neural cell adhesion molecule 2; phosphorylation,
immunoglobulin domain, membrane, glycoprote adhesion,
transmembrane; HET: NAG; 2.00A {Homo sapiens}
Length = 189
Score = 94.8 bits (236), Expect = 5e-24
Identities = 41/290 (14%), Positives = 79/290 (27%), Gaps = 109/290 (37%)
Query: 1 TPPILTYSFIEQTLQPGPAVSLKCIASGNPTPDIGWTLDGFELPTNNRFVIGQFVSGHGD 60
+ Q + G + C S +P P + W E+ T + +
Sbjct: 1 SMLTFREVVSPQEFKQGEDAEVVCRVSSSPAPAVSWLYHNEEVTTISDNRFAMLANN--- 57
Query: 61 VISHVNISHVTVEDGGEYACVAENRAGTCEITPYDSGPYLIAWFKDGRQIPGRTSSTSLV 120
++ I ++ D G Y C A
Sbjct: 58 ---NLQILNINKSDEGIYRCEGRVEAR--------------------------------- 81
Query: 121 INPVGREDRGIYQCIARRSDGDVAQGSAELQLGGLPYVRLIPK---VTAIDGEGLSIKCP 177
G++ + + P + + K TA GE ++ C
Sbjct: 82 --------------------GEIDFRDIIVIVNVPPAISMPQKSFNATAERGEEMTFSCR 121
Query: 178 VAGYPIEEVHWEKVPPKIESFAFPFDGLPEGARTRVICGVTHGDPPLTIRWLKDGKPL-- 235
+G P P I W ++GK +
Sbjct: 122 ASGSP---------EP-------------------------------AISWFRNGKLIEE 141
Query: 236 SPRFPVNVSDLDSFSSLLSINSVSAAHSGEYTCVASNTAAQARYSSKLQV 285
+ ++ + S+ + L++ ++ + G Y C A+N A + + LQV
Sbjct: 142 NEKYILKGSN-----TELTVRNIINSDGGPYVCRATNKAGEDEKQAFLQV 186
>3grw_A Fibroblast growth factor receptor 3; FGFR3, protein-protein
complex, receptor tyrosine kinas binding, immunoglobulin
domain, kinase, membrane, nucleotid binding; HET: NAG;
2.10A {Homo sapiens}
Length = 241
Score = 95.4 bits (237), Expect = 1e-23
Identities = 42/201 (20%), Positives = 61/201 (30%), Gaps = 45/201 (22%)
Query: 101 IAWFKDGRQIPG---------RTSSTSLVINPVGREDRGIYQCIARRSDGDVAQGSAELQ 151
I+W K+GR+ G R SLV+ V DRG Y C+ G + + L
Sbjct: 47 ISWLKNGREFRGEHRIGGIKLRHQQWSLVMESVVPSDRGNYTCVVENKFG-SIRQTYTLD 105
Query: 152 LGGL-----PYVRLIPK-VTAIDGEGLSIKCPVAGYPIEEVHWEKVPPKIESFAFPFDGL 205
+ +P TA+ G + C V + W K
Sbjct: 106 VLERSPHRPILQAGLPANQTAVLGSDVEFHCKVYSDAQPHIQWLK--------------- 150
Query: 206 PEGARTRVICGVTHGDPPLTIRWLKDGKPLSPRFPVNVSDLDSFSSLLSINSVSAAHSGE 265
+ DG P +S+ L + +VS GE
Sbjct: 151 --------------HVEVNGSKVGPDGTPYVTVLKSWISESVEADVRLRLANVSERDGGE 196
Query: 266 YTCVASNTAAQARYSSKLQVK 286
Y C A+N A + L V
Sbjct: 197 YLCRATNFIGVAEKAFWLSVH 217
Score = 77.3 bits (190), Expect = 5e-17
Identities = 22/96 (22%), Positives = 38/96 (39%), Gaps = 7/96 (7%)
Query: 2 PPILTYSFIEQTLQPGPAVSLKCIASGNPTPDIGWT----LDGFELPTNNRFVI---GQF 54
P + QT G V C + P I W ++G ++ + + +
Sbjct: 114 PILQAGLPANQTAVLGSDVEFHCKVYSDAQPHIQWLKHVEVNGSKVGPDGTPYVTVLKSW 173
Query: 55 VSGHGDVISHVNISHVTVEDGGEYACVAENRAGTCE 90
+S + + +++V+ DGGEY C A N G E
Sbjct: 174 ISESVEADVRLRLANVSERDGGEYLCRATNFIGVAE 209
Score = 71.9 bits (176), Expect = 4e-15
Identities = 23/80 (28%), Positives = 31/80 (38%), Gaps = 1/80 (1%)
Query: 206 PEGARTRVICGVTHGDPPLTIRWLKDGKPLSPRFPVNVSDLDSFSSLLSINSVSAAHSGE 265
P R C G+P +I WLK+G+ + L L + SV + G
Sbjct: 28 PAANTVRFRCPAA-GNPTPSISWLKNGREFRGEHRIGGIKLRHQQWSLVMESVVPSDRGN 86
Query: 266 YTCVASNTAAQARYSSKLQV 285
YTCV N R + L V
Sbjct: 87 YTCVVENKFGSIRQTYTLDV 106
>3s97_C Contactin-1; carbonic anhdyrase like immunoglobulin, cell adhesion
comple adhesion; HET: NAG; 2.30A {Homo sapiens}
Length = 201
Score = 92.6 bits (230), Expect = 6e-23
Identities = 33/207 (15%), Positives = 61/207 (29%), Gaps = 43/207 (20%)
Query: 88 TCEITPYDSGPYLIAWFKDGRQIPGRTSST--------SLVINPVGREDRGIYQCIARRS 139
C+ + W + + +L I V D+G Y C
Sbjct: 29 LCDPPYHFPDDLSYRWLLNEFPVFITMDKRRFVSQTNGNLYIANVEASDKGNYSCFVSSP 88
Query: 140 DGDVAQGSAELQLGGLPYVRLIPKVTAIDGEGLSIKCPVAGYPIEEVHWEKVPPKIESFA 199
+ S + L +P P P I
Sbjct: 89 SITKSVFSKFIPLIPIPERTTKP----------------------------YPADIVV-Q 119
Query: 200 FPFDGLPEGARTRVICGVTHGDPPLTIRWLKDGKPLSPRFPVNVSDLDSFSSLLSINSVS 259
F G + C G+P IRW K +P+ +++ + ++L I ++
Sbjct: 120 FKDVYALMGQNVTLECFAL-GNPVPDIRWRKVLEPMPST-----AEISTSGAVLKIFNIQ 173
Query: 260 AAHSGEYTCVASNTAAQARYSSKLQVK 286
G Y C A N + ++ +++ V+
Sbjct: 174 LEDEGIYECEAENIRGKDKHQARIYVQ 200
Score = 86.1 bits (213), Expect = 2e-20
Identities = 25/87 (28%), Positives = 36/87 (41%), Gaps = 9/87 (10%)
Query: 2 PPILTYSFIEQTLQPGPAVSLKCIASGNPTPDIGWTLDGFELPTNNRFVIGQFVSGHGDV 61
P + F + G V+L+C A GNP PDI W +P+
Sbjct: 113 PADIVVQFKDVYALMGQNVTLECFALGNPVPDIRWRKVLEPMPSTAEISTSG-------- 164
Query: 62 ISHVNISHVTVEDGGEYACVAENRAGT 88
+ + I ++ +ED G Y C AEN G
Sbjct: 165 -AVLKIFNIQLEDEGIYECEAENIRGK 190
Score = 57.6 bits (139), Expect = 3e-10
Identities = 19/80 (23%), Positives = 32/80 (40%), Gaps = 2/80 (2%)
Query: 207 EGARTRVICGVTHGDP-PLTIRWLKDGKPLSPRFPVNVSDLDSFSSLLSINSVSAAHSGE 265
EG ++C + P L+ RWL + P+ + +L I +V A+ G
Sbjct: 22 EGKGMVLLCDPPYHFPDDLSYRWLLNEFPVFITMDKRRFVSQTNGNLY-IANVEASDKGN 80
Query: 266 YTCVASNTAAQARYSSKLQV 285
Y+C S+ + SK
Sbjct: 81 YSCFVSSPSITKSVFSKFIP 100
>2yd1_A Tyrosine-protein phosphatase LAR; hydrolase; 1.80A {Drosophila
melanogaster} PDB: 3pxj_A
Length = 212
Score = 91.8 bits (228), Expect = 1e-22
Identities = 50/296 (16%), Positives = 74/296 (25%), Gaps = 111/296 (37%)
Query: 1 TPPILTYSFIEQTLQPGPAVSLKCIASGNPTPDIGWTLDGFELPTNNRFVIGQFVSGHGD 60
PP + Q ++ G S C A G+P P I W +G ++
Sbjct: 5 HPPEIIRKPQNQGVRVGGVASFYCAARGDPPPSIVWRKNGKKVSGTQS------------ 52
Query: 61 VISHVNISHVTVEDGGEYACVAENRAGTCEITPYDSGPYLIAWFKDGRQIPGRTSSTSLV 120
+ +E G + L
Sbjct: 53 -------RYTVLEQPG--------------------------------------GISILR 67
Query: 121 INPVGR-EDRGIYQCIARRSDGDVAQGSAELQL-------GGLPYVRLIPK-VTAIDGEG 171
I PV D Y+C+A GD A L + G P + P G
Sbjct: 68 IEPVRAGRDDAPYECVAENGVGDAVSADATLTIYEGDKTPAGFPVITQGPGTRVIEVGHT 127
Query: 172 LSIKCPVAGYPIEEVHWEKVPPKIESFAFPFDGLPEGARTRVICGVTHGDPPLTIRWLKD 231
+ + C G P P I W+K+
Sbjct: 128 VLMTCKAIGNP---------TP-------------------------------NIYWIKN 147
Query: 232 GKPLSPRFPVNVSDLDSFSSLLSINSVSAAHSGEYTCVASNTAAQAR-YSSKLQVK 286
+ P L I + G+Y CVA N+ ++ L VK
Sbjct: 148 QTKVDMSNPRYSLK----DGFLQIENSREEDQGKYECVAENSMGTEHSKATNLYVK 199
>2v44_A NCAM2, neural cell adhesion molecule 2; phosphorylation,
immunoglobulin domain, IG, membrane, homphilic,
glycoprotein, transmembrane; 1.77A {Homo sapiens} PDB:
2xy2_A* 2vaj_A
Length = 189
Score = 91.0 bits (226), Expect = 2e-22
Identities = 30/194 (15%), Positives = 54/194 (27%), Gaps = 51/194 (26%)
Query: 101 IAWFKDGRQIP--------GRTSSTSLVINPVGREDRGIYQCIARRSDGDVAQGSAELQL 152
+ G +I + L I ED GIY+C A + G + + L++
Sbjct: 34 DWYNPQGEKIISTQRVVVQKEGVRSRLTIYNANIEDAGIYRCQATDAKGQTQEATVVLEI 93
Query: 153 GGLPYVRLIPK-VTAIDGEGLSIKCPVAGYPIEEVHWEKVPPKIESFAFPFDGLPEGART 211
R + GE + C V+ P P
Sbjct: 94 YQKLTFREVVSPQEFKQGEDAEVVCRVSSSP---------AP------------------ 126
Query: 212 RVICGVTHGDPPLTIRWLKDGKPLSPRFPVNVSDLDSFSSLLSINSVSAAHSGEYTCVAS 271
+ WL + ++ + L ++ L I +++ + G Y C
Sbjct: 127 -------------AVSWLYHNEEVTTISDNRFAMLA--NNNLQILNINKSDEGIYRCEGR 171
Query: 272 NTAAQARYSSKLQV 285
A + V
Sbjct: 172 VEARGEIDFRDIIV 185
Score = 90.6 bits (225), Expect = 2e-22
Identities = 32/179 (17%), Positives = 57/179 (31%), Gaps = 52/179 (29%)
Query: 2 PPILTYSFIEQTLQPGPAVSLKCIASGNPTPDIGWTLDGFELPTNNRFVIGQFVSGHGDV 61
+T S + L G + C A G P + G ++ + R V+ + V
Sbjct: 2 LLQVTISLSKVELSVGESKFFTCTAIGEPESIDWYNPQGEKIISTQRVVVQK-----EGV 56
Query: 62 ISHVNISHVTVEDGGEYACVAENRAG---------------------------------- 87
S + I + +ED G Y C A + G
Sbjct: 57 RSRLTIYNANIEDAGIYRCQATDAKGQTQEATVVLEIYQKLTFREVVSPQEFKQGEDAEV 116
Query: 88 TCEIT--PYDSGPYLIAWFKDGRQIPGRTS-------STSLVINPVGREDRGIYQCIAR 137
C ++ P ++W ++ + + +L I + + D GIY+C R
Sbjct: 117 VCRVSSSP----APAVSWLYHNEEVTTISDNRFAMLANNNLQILNINKSDEGIYRCEGR 171
Score = 66.0 bits (161), Expect = 2e-13
Identities = 15/87 (17%), Positives = 26/87 (29%), Gaps = 6/87 (6%)
Query: 2 PPILTYSFIEQTLQPGPAVSLKCIASGNPTPDIGWTLDGFELPTNNRFVIGQFVSGHGDV 61
Q + G + C S +P P + W E+ T + +
Sbjct: 96 KLTFREVVSPQEFKQGEDAEVVCRVSSSPAPAVSWLYHNEEVTTISDNRFAMLANN---- 151
Query: 62 ISHVNISHVTVEDGGEYACVAENRAGT 88
++ I ++ D G Y C A
Sbjct: 152 --NLQILNINKSDEGIYRCEGRVEARG 176
Score = 61.7 bits (150), Expect = 9e-12
Identities = 16/81 (19%), Positives = 30/81 (37%), Gaps = 3/81 (3%)
Query: 207 EGARTRVICGVTHGDPPLTIRWLKDGKPLSPRFPVNVSDLDSFSSLLSINSVSAAHSGEY 266
G C G+P + G+ + V V S L I + + +G Y
Sbjct: 16 VGESKFFTCTAI-GEPESIDWYNPQGEKIISTQRVVVQKEGVRSRLT-IYNANIEDAGIY 73
Query: 267 TCVASNTAAQARYSS-KLQVK 286
C A++ Q + ++ L++
Sbjct: 74 RCQATDAKGQTQEATVVLEIY 94
>2c5d_C AXL oncogene, tyrosine-protein kinase receptor UFO; signaling
protein/receptor, growth regulation/complex, vitamin
K-dependent protein; HET: NAG; 3.3A {Homo sapiens}
Length = 195
Score = 90.7 bits (225), Expect = 2e-22
Identities = 29/180 (16%), Positives = 52/180 (28%), Gaps = 39/180 (21%)
Query: 11 EQTLQPGPAVSLKCIA-SGNPTPDIGWTLDGFELPTNNR----FVIGQFVSGHGDVISHV 65
T G +L+C P++ W DG L + +G+ V+S +
Sbjct: 11 NITGARGLTGTLRCQLQVQGEPPEVHWLRDGQILELADSTQTQVPLGEDEQDDWIVVSQL 70
Query: 66 NISHVTVEDGGEYACVAENRAGTCE---------------ITPYD--------------- 95
I+ + + D G+Y C+ T P D
Sbjct: 71 RITSLQLSDTGQYQCLVFLGHQTFVSQPGYVGLEGLPYFLEEPEDRTVAANTPFNLSCQA 130
Query: 96 SG---PYLIAWFKDGRQI-PGRTSSTSLVINPVGREDRGIYQCIARRSDGDVAQGSAELQ 151
G P + W +D + ++ G + C A + G +A +
Sbjct: 131 QGPPEPVDLLWLQDAVPLATAPGHGPQRSLHVPGLNKTSSFSCEAHNAKGVTTSRTATIT 190
Score = 59.1 bits (143), Expect = 8e-11
Identities = 15/81 (18%), Positives = 28/81 (34%), Gaps = 9/81 (11%)
Query: 215 CGVTHGDPPLTIRWLKDGKPLSP--------RFPVNVSDLDSFSSLLSINSVSAAHSGEY 266
C + P + WL+DG+ L + D S L I S+ + +G+Y
Sbjct: 24 CQLQVQGEPPEVHWLRDGQILELADSTQTQVPLGEDEQDDWIVVSQLRITSLQLSDTGQY 83
Query: 267 TCVASNTAAQA-RYSSKLQVK 286
C+ + ++
Sbjct: 84 QCLVFLGHQTFVSQPGYVGLE 104
Score = 55.7 bits (134), Expect = 1e-09
Identities = 17/89 (19%), Positives = 27/89 (30%), Gaps = 13/89 (14%)
Query: 1 TPPILTYSFIEQTLQPGPAVSLKCIASGNPTP-DIGWTLDGFELPTNNRFVIGQFVSGHG 59
P ++T+ +L C A G P P D+ W D L T
Sbjct: 105 GLPYFLEEPEDRTVAANTPFNLSCQAQGPPEPVDLLWLQDAVPLATAPG----------- 153
Query: 60 DVISHVNISHVTVEDGGEYACVAENRAGT 88
++ + ++C A N G
Sbjct: 154 -HGPQRSLHVPGLNKTSSFSCEAHNAKGV 181
>1epf_A NCAM, protein (neural cell adhesion molecule); immunoglobulin fold,
glycoprotein; 1.85A {Rattus norvegicus} SCOP: b.1.1.4
b.1.1.4 PDB: 2ncm_A 3ncm_A
Length = 191
Score = 90.3 bits (224), Expect = 3e-22
Identities = 37/210 (17%), Positives = 63/210 (30%), Gaps = 55/210 (26%)
Query: 88 TCEITPYDSGPYLIAWFK-DGRQIPGRTS----------STSLVINPVGREDRGIYQCIA 136
C++ I+WF +G ++ S++L I +D GIY+C+
Sbjct: 23 LCQVAGDAKDKD-ISWFSPNGEKLSPNQQRISVVWNDDDSSTLTIYNANIDDAGIYKCVV 81
Query: 137 RRSDGDVAQGSAELQLGGLPYVRLIPK-VTAIDGEGLSIKCPVAGYPIEEVHWEKVPPKI 195
DG ++ + +++ + P +GE I C V PP
Sbjct: 82 TAEDGTQSEATVNVKIFQKLMFKNAPTPQEFKEGEDAVIVCDVVSSL---------PP-- 130
Query: 196 ESFAFPFDGLPEGARTRVICGVTHGDPPLTIRWLKDGKPLSPRFPVNVSDLDSFSSLLSI 255
TI W G+ + + V L ++ L I
Sbjct: 131 -----------------------------TIIWKHKGRDVILKKDVRFIVLS--NNYLQI 159
Query: 256 NSVSAAHSGEYTCVASNTAAQARYSSKLQV 285
+ G Y C A +QV
Sbjct: 160 RGIKKTDEGTYRCEGRILARGEINFKDIQV 189
Score = 79.9 bits (197), Expect = 2e-18
Identities = 32/197 (16%), Positives = 56/197 (28%), Gaps = 55/197 (27%)
Query: 2 PPILTYSFIEQTLQPGPAVSLKCIASGNP-TPDIGWTL-DGFELPTNN-RFVIGQFVSGH 58
+ + + G + C +G+ DI W +G +L N R +
Sbjct: 2 VLQVDIVPSQGEISVGESKFFLCQVAGDAKDKDISWFSPNGEKLSPNQQRISVVWNDDDS 61
Query: 59 GDVISHVNISHVTVEDGGEYACVAENRAGT------------------------------ 88
+ I + ++D G Y CV GT
Sbjct: 62 STLT----IYNANIDDAGIYKCVVTAEDGTQSEATVNVKIFQKLMFKNAPTPQEFKEGED 117
Query: 89 ----CEIT--PYDSGPYLIAWFKDGRQIPGRTS-------STSLVINPVGREDRGIYQCI 135
C++ P I W GR + + + L I + + D G Y+C
Sbjct: 118 AVIVCDVVSSL----PPTIIWKHKGRDVILKKDVRFIVLSNNYLQIRGIKKTDEGTYRCE 173
Query: 136 ARRSDGDVAQGSAELQL 152
R ++Q+
Sbjct: 174 GRILARGE-INFKDIQV 189
Score = 60.2 bits (146), Expect = 3e-11
Identities = 22/99 (22%), Positives = 42/99 (42%), Gaps = 6/99 (6%)
Query: 192 PPKIESFAFPFDG-LPEGARTRVICGVTHGDPPLTIRWLK-DGKPLSP-RFPVNVSDLDS 248
+++ P G + G +C V I W +G+ LSP + ++V D
Sbjct: 2 VLQVD--IVPSQGEISVGESKFFLCQVAGDAKDKDISWFSPNGEKLSPNQQRISVVWNDD 59
Query: 249 FSSLLSINSVSAAHSGEYTCVASNTA-AQARYSSKLQVK 286
SS L+I + + +G Y CV + Q+ + +++
Sbjct: 60 DSSTLTIYNANIDDAGIYKCVVTAEDGTQSEATVNVKIF 98
>3b5h_A Cervical EMMPRIN, HAB18G/CD147; IG-like domain, cell invasion;
2.80A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4
Length = 184
Score = 90.1 bits (223), Expect = 3e-22
Identities = 31/207 (14%), Positives = 52/207 (25%), Gaps = 51/207 (24%)
Query: 88 TCEITPYDSGPYLIAWFKDGRQIP-GRTSSTSLVINPVGREDRGIYQCIARRSDGDVAQG 146
TC + + W K G + + G Y C+ G
Sbjct: 19 TCSLNDSATEVTGHRWLKGGVVLKEDALPGQKTEFKVDSDDQWGEYSCVFLPE----PMG 74
Query: 147 SAELQLGGLPYVRLIPK-VTAIDGEGLSIKCPVAGYPIEEVHWEKVPPKIESFAFPFDGL 205
+A +QL G P V+ + +GE + C P
Sbjct: 75 TANIQLHGPPRVKAVKSSEHINEGETAMLVCKSESVP----------------------- 111
Query: 206 PEGARTRVICGVTHGDPPLTIRWLKDGKPLSPRFPVNVSD-----LDSFSSLLSINSVS- 259
P W K S L I +++
Sbjct: 112 ----------------PVTDWAWYKITDSEDKALMNGSESRFFVSSSQGRSELHIENLNM 155
Query: 260 AAHSGEYTCVASNTAAQARYSSKLQVK 286
A G+Y C +++ + L+V+
Sbjct: 156 EADPGQYRCNGTSSKGSDQAIITLRVR 182
Score = 62.0 bits (150), Expect = 7e-12
Identities = 29/198 (14%), Positives = 44/198 (22%), Gaps = 66/198 (33%)
Query: 1 TPPILTYSFIEQTLQPGPAVSLKCIASGNPTPDIG--WTLDGFELPTNNRFVIGQFVSGH 58
+ T G + L C + + T G W G L +
Sbjct: 2 AGTVFT-----TVEDLGSKILLTCSLNDSATEVTGHRWLKGGVVLKEDALPG-------- 48
Query: 59 GDVISHVNISHVTVEDGGEYACVAENRAG------------------------------T 88
+ + GEY+CV
Sbjct: 49 ----QKTEFKVDSDDQWGEYSCVFLPEPMGTANIQLHGPPRVKAVKSSEHINEGETAMLV 104
Query: 89 CEITPYDSGPYLIAWFKDGR--------------QIPGRTSSTSLVINPVGRE-DRGIYQ 133
C+ AW+K + + L I + E D G Y+
Sbjct: 105 CKSESVPP-VTDWAWYKITDSEDKALMNGSESRFFVSSSQGRSELHIENLNMEADPGQYR 163
Query: 134 CIARRSDGDVAQGSAELQ 151
C S G Q L+
Sbjct: 164 CNGTSSKG-SDQAIITLR 180
Score = 55.4 bits (133), Expect = 1e-09
Identities = 16/81 (19%), Positives = 26/81 (32%), Gaps = 12/81 (14%)
Query: 207 EGARTRVICGVTHGDPPLT-IRWLKDGKPLSPRFPVNVSDLDSFSSLLSINSVSAAHSGE 265
G++ + C + +T RWLK G L S GE
Sbjct: 12 LGSKILLTCSLNDSATEVTGHRWLKGGVVLKED--------ALPGQKTEFKVDSDDQWGE 63
Query: 266 YTCVASNTAAQARYSSKLQVK 286
Y+CV ++ +Q+
Sbjct: 64 YSCVFLPEPMG---TANIQLH 81
>2jll_A NCAM2, neural cell adhesion molecule 2; immunoglobulin domain,
immunoglobulin superfamily, transmembrane,
phosphoprotein, membrane, glycoprotein; HET: NAG; 2.30A
{Homo sapiens} PDB: 2xyc_A* 2jlk_A* 2doc_A
Length = 389
Score = 93.3 bits (232), Expect = 6e-22
Identities = 48/266 (18%), Positives = 78/266 (29%), Gaps = 64/266 (24%)
Query: 2 PPILTYSFIEQTLQPGPAVSLKCIASGNPTPDIGWT--LDGFELPTNNRFVIGQFVSGHG 59
P I+ +T V+L C A G P P+I W +DGF ++ + G+
Sbjct: 2 PHIIQ--LKNETTYENGQVTLVCDAEGEPIPEITWKRAVDGFTFTEGDKSLDGRIEVKGQ 59
Query: 60 DVISHVNISHVTVEDGGEYACVAENRAGT------------------------------- 88
S ++I V + D G Y C A +R G
Sbjct: 60 HGSSSLHIKDVKLSDSGRYDCEAASRIGGHQKSMYLDIEYAPKFISNQTIYYSWEGNPIN 119
Query: 89 --CEITPYDSGPYLIAWFKDGRQIPGRTS----------STSLVINPVGREDRGIYQCIA 136
C++ + I W +D +P + + L I P D G Y C A
Sbjct: 120 ISCDVK-SNPPAS-IHWRRDKLVLPAKNTTNLKTYSTGRKMILEIAPTSDNDFGRYNCTA 177
Query: 137 RRSDGDVAQGSAELQLGGLPYVRLIPKVTAIDGEGLSIK---------CPVAGYPIE--- 184
+ L L +P K+ + + P+ Y ++
Sbjct: 178 -TNHIGTRFQEYILALADVPSSPYGVKIIELSQTTAKVSFNKPDSHGGVPIHHYQVDVKE 236
Query: 185 --EVHWEKVPPKIESFAFPFDGLPEG 208
W+ V + L
Sbjct: 237 VASEIWKIVRSHGVQTMVVLNNLEPN 262
Score = 54.4 bits (131), Expect = 1e-08
Identities = 19/87 (21%), Positives = 31/87 (35%), Gaps = 7/87 (8%)
Query: 206 PEGARTRVICGVTHGDPPLTIRWLKDGKPLSPRFPVNVSD------LDSFSSLLSINSVS 259
E + ++C G+P I W + + D SS L I V
Sbjct: 13 YENGQVTLVCDAE-GEPIPEITWKRAVDGFTFTEGDKSLDGRIEVKGQHGSSSLHIKDVK 71
Query: 260 AAHSGEYTCVASNTAAQARYSSKLQVK 286
+ SG Y C A++ + S L ++
Sbjct: 72 LSDSGRYDCEAASRIGGHQKSMYLDIE 98
>1nn8_R CD155 antigen, poliovirus receptor; icosahedral virus,
picornavirus, virus/receptor complex; 15.00A {Homo
sapiens} SCOP: i.6.1.1 PDB: 1dgi_R
Length = 302
Score = 92.1 bits (228), Expect = 6e-22
Identities = 40/340 (11%), Positives = 67/340 (19%), Gaps = 111/340 (32%)
Query: 11 EQTLQPGPAVSLKCIASGNPTPD-----IGWTLDG-------------FELPTNNRFVIG 52
+ G +V+L C + W G + R
Sbjct: 9 QVPGFLGDSVTLPCYLQVPNMEVTHVSQLTWARHGESGSMAVFHQTQGPSYSESKRLEFV 68
Query: 53 QFVSGHGDVISHVNISHVTVEDGGEYACVAENRAGTC-------------EITPYDSGPY 99
G + + + + VED G Y C+ + T
Sbjct: 69 AARLGAELRNASLRMFGLRVEDEGNYTCLFVTFPQGSRSVDIWLRVLAKPQNTAEVQKVQ 128
Query: 100 L--------------------IAWFKDGRQIPGR-----------TSSTSLVINPVGRED 128
L I W D +P T ++ ++ P + D
Sbjct: 129 LTGEPVPMARCVSTGGRPPAQITWHSDLGGMPNTSQVPGFLSGTVTVTSLWILVPSSQVD 188
Query: 129 RGIYQCIAR-RSDGDVAQGSAEL--QLGGLPYVRLIPKVTAIDGEGLSIKCPVAGYPIEE 185
C S + L + + ++ C P
Sbjct: 189 GKNVTCKVEHESFEKPQLLTVNLTVYYPPEVSISGYDNNWYLGQNEATLTCDARSNP--- 245
Query: 186 VHWEKVPPKIESFAFPFDGLPEGARTRVICGVTHGDPPLTIRWLKDGKPLSPRFPVNVSD 245
P W PL P
Sbjct: 246 ------------------------------------EPTGYNWSTTMGPLPPFAVAQ--- 266
Query: 246 LDSFSSLLSINSVSAAHSGEYTCVASNTAAQARYSSKLQV 285
+ L I V + C +N + +QV
Sbjct: 267 ----GAQLLIRPVDKPINTTLICNVTNALGARQAELTVQV 302
Score = 85.9 bits (212), Expect = 9e-20
Identities = 35/189 (18%), Positives = 54/189 (28%), Gaps = 43/189 (22%)
Query: 2 PPILTYSFIEQTLQPGPAVSLKCIA-SGNPTPDIGWTLDGFELPTNNRFVIGQFVSGHGD 60
P T + L P +C++ G P I W D +P ++ F+SG
Sbjct: 117 KPQNTAEVQKVQLTGEPVPMARCVSTGGRPPAQITWHSDLGGMPNTSQVP--GFLSGTVT 174
Query: 61 VISHVNISHVTVEDGGEYACVAENRAGTCE----------------ITPYDSG------- 97
V S + + DG C E+ + I+ YD+
Sbjct: 175 VTSLWILVPSSQVDGKNVTCKVEHESFEKPQLLTVNLTVYYPPEVSISGYDNNWYLGQNE 234
Query: 98 ------------PYLIAWFKDGRQIPGRT--SSTSLVINPVGREDRGIYQCIARRSDGDV 143
P W +P L+I PV + C + G
Sbjct: 235 ATLTCDARSNPEPTGYNWSTTMGPLPPFAVAQGAQLLIRPVDKPINTTLICNVTNALG-- 292
Query: 144 AQGSAELQL 152
AEL +
Sbjct: 293 -ARQAELTV 300
Score = 40.5 bits (94), Expect = 4e-04
Identities = 17/137 (12%), Positives = 37/137 (27%), Gaps = 31/137 (22%)
Query: 156 PYVRLIPKVTAIDGEGLSIKCPVAGYP-----IEEVHWEKVPPKIESFAF-PFDGLPEGA 209
V+ +V G+ +++ C + + ++ W + F G
Sbjct: 2 VVVQAPTQVPGFLGDSVTLPCYLQVPNMEVTHVSQLTWARHGESGSMAVFHQTQGPSYSE 61
Query: 210 RTRVICGVTHGDPPLTIRWLKDGKPLSPRFPVNVSDLDSFSSLLSINSVSAAHSGEYTCV 269
R+ F + ++ L + + G YTC+
Sbjct: 62 SKRL------------------------EFVAARLGAELRNASLRMFGLRVEDEGNYTCL 97
Query: 270 ASNTAAQARYSS-KLQV 285
+R L+V
Sbjct: 98 FVTFPQGSRSVDIWLRV 114
>2oz4_A Intercellular adhesion molecule 1; IGSF domain, structural
plasticity, cell-surface dimerizatio adhesion; HET: NAG
FUC; 2.70A {Homo sapiens} SCOP: b.1.1.3 b.1.1.4 b.1.1.4
PDB: 1p53_A*
Length = 265
Score = 91.3 bits (226), Expect = 7e-22
Identities = 45/319 (14%), Positives = 78/319 (24%), Gaps = 95/319 (29%)
Query: 1 TPPILTYSFIEQTLQPGPAVSLKCIASGN---PTPDIGWTLDGFELPTNNRFVIGQFVSG 57
TPP L + L+ ++ C G + L L V+
Sbjct: 5 TPPQLVSP---RVLEVDTQGTVVCSLDGLFPVSEAQVHLALGDQRLNPT--------VTY 53
Query: 58 HGDVISHVNISHVTVEDGG--EYACVAENRAGTCE--------------ITPYD------ 95
D S VT ED G C + E +
Sbjct: 54 GNDSFSAKASVSVTAEDEGTQRLTCAVILGNQSQETLQTVTIYSFPAPNVILTKPEVSEG 113
Query: 96 -------SGPYLIAWFKDGRQIPGRTSSTSLVINPVGREDRGIYQCIARRS-DGDVAQGS 147
+G L++ ++ + C A G + +
Sbjct: 114 TEVTVKCEAHPRAKVTLNGVPAQPLGPRAQLLLKATPEDNGRSFSCSATLEVAGQLIHKN 173
Query: 148 AELQLGGLPYVRLIPKVTAIDGEGLSIKCPVAGYPIEEVHWEKVPPKIESFAFPFDG-LP 206
+L V P+++ P + P
Sbjct: 174 QTREL--------------------------------RVL---YGPRLDERDCPGNWTWP 198
Query: 207 EGARTRVICGVTHGDPPLTIRWLKDGKPLSPRFPVNVSDLDSFSSLLSINSVSAAHSGEY 266
E ++ +C G+P ++ LKDG P + +V+ G Y
Sbjct: 199 ENSQQTPMC-QAWGNPLPELKCLKDGTFPLP--------------IGESVTVTRDLEGTY 243
Query: 267 TCVASNTAAQARYSSKLQV 285
C A +T + + V
Sbjct: 244 LCRARSTQGEVTREVTVNV 262
Score = 42.3 bits (99), Expect = 8e-05
Identities = 14/97 (14%), Positives = 29/97 (29%), Gaps = 8/97 (8%)
Query: 192 PPKIESFAFPFDGLPEGARTRVICGVTHGDPP--LTIRWLKDGKPLSPRFPVNVSDLDSF 249
PP++ S L + V+C + P + + L+P +D S
Sbjct: 6 PPQLVSPRV----LEVDTQGTVVCSLDGLFPVSEAQVHLALGDQRLNPT-VTYGNDSFSA 60
Query: 250 SSLLSINSVSAAHSGEYTCVASNTAAQARYSSKLQVK 286
+ +S+ + TC + +
Sbjct: 61 KASVSVT-AEDEGTQRLTCAVILGNQSQETLQTVTIY 96
>3u83_A Poliovirus receptor-related protein 1; nectin-1, hinge region
plasiticity, cell adhesion; HET: PG6; 2.50A {Homo
sapiens} PDB: 3alp_A* 3u82_B 3sku_E* 2l7j_A
Length = 331
Score = 92.1 bits (228), Expect = 1e-21
Identities = 39/357 (10%), Positives = 70/357 (19%), Gaps = 123/357 (34%)
Query: 2 PPILTYSFIEQTLQPGPAVSLKCIASGNPTPD----IGWTLDGFELPTN----------- 46
P + G V L C + + W N
Sbjct: 14 PSQVVQVNDSMYGFIGTDVVLHCSFANPLPSVKITQVTWQKSTNGSKQNVAIYNPSMGVS 73
Query: 47 ------NRFVIGQFVSGHGDVISHVNISHVTVEDGGEYACVAENRAG------------- 87
R + G + +S + +ED G Y C
Sbjct: 74 VLAPYRERVEFLRPSFTDG----TIRLSRLELEDEGVYICEFATFPTGNRESQLNLTVMA 129
Query: 88 --------------------------TCEITPYDSGPYLIAWFKDGRQIP---------G 112
TC + P +++W + G
Sbjct: 130 KPTNWIEGTQAVLRAKKGQDDKVLVATCT-SANGKPPSVVSWETRLKGEAEYQEIRNPNG 188
Query: 113 RTSSTS-LVINPVGREDRGIYQCIARRSDGDVAQGSAELQLGGLPYVRLIPK--VTAIDG 169
+ S + P + CI + S L + P V + +
Sbjct: 189 TVTVISRYRLVPSREAHQQSLACIVNYHMDRF-KESLTLNVQYEPEVTIEGFDGNWYLQR 247
Query: 170 EGLSIKCPVAGYPIEEVHWEKVPPKIESFAFPFDGLPEGARTRVICGVTHGDPPLTIRWL 229
+ + C P P W
Sbjct: 248 MDVKLTCKADANP---------------------------------------PATEYHWT 268
Query: 230 KDGKPLSPRFPVNVSDLDSFSSLLSINSVSAAHSGEYTCVASNTAAQARYSSKLQVK 286
L +L ++ + +G Y C A+N ++ +
Sbjct: 269 TLNGSLPKGVEA------QNRTLFFKGPINYSLAGTYICEATNPIGTRSGQVEVNIT 319
Score = 42.0 bits (98), Expect = 1e-04
Identities = 19/145 (13%), Positives = 40/145 (27%), Gaps = 29/145 (20%)
Query: 143 VAQGSAELQLGGLP--YVRLIPKVTAIDGEGLSIKC----PVAGYPIEEVHWEKVPPKIE 196
+A + Q+G P V++ + G + + C P+ I +V W+K +
Sbjct: 1 MASMTGGQQMGRDPSQVVQVNDSMYGFIGTDVVLHCSFANPLPSVKITQVTWQKSTNGSK 60
Query: 197 SFAFPFDGLPEGARTRVICGVTHGDPPLTIRWLKDGKPLSPRFPVNVSDLDSFSSLLSIN 256
++ + P R + + ++
Sbjct: 61 QNVAIYNPSMG---------------------VSVLAPYRERVEFLRPSFTDGT--IRLS 97
Query: 257 SVSAAHSGEYTCVASNTAAQARYSS 281
+ G Y C + R S
Sbjct: 98 RLELEDEGVYICEFATFPTGNRESQ 122
>3ojm_B Fibroblast growth factor receptor 2; beta trefoil motif,
immunoglobulin-like domain, growth facto factor
receptor, extracellular; 2.10A {Homo sapiens} PDB:
1nun_B* 3oj2_C 2fdb_P 1iil_E 1ev2_E 1e0o_B* 1ii4_E
1djs_A 3ojv_C* 1cvs_C 1fq9_C* 1evt_C
Length = 231
Score = 89.6 bits (222), Expect = 1e-21
Identities = 38/201 (18%), Positives = 62/201 (30%), Gaps = 46/201 (22%)
Query: 101 IAWFKDGRQIPG---------RTSSTSLVINPVGREDRGIYQCIARRSDGDVAQGSAELQ 151
+ W K+G++ R SL++ V D+G Y C+ G + L
Sbjct: 51 MRWLKNGKEFKQEHRIGGYKVRNQHWSLIMESVVPSDKGNYTCVVENEYG-SINHTYHLD 109
Query: 152 LGGLPYVRLI-----PK-VTAIDGEGLSIKCPVAGYPIEEVHWEKVPPKIESFAFPFDGL 205
+ R I P + + G + C V + W K
Sbjct: 110 VVERSRHRPILQAGLPANASTVVGGDVEFVCKVYSDAQPHIQWIK--------------- 154
Query: 206 PEGARTRVICGVTHGDPPLTIRWLKDGKPLSPRFPVNVSDLDSFSSLLSINSVSAAHSGE 265
++ DG P + + + L + +V+ A +GE
Sbjct: 155 --------------HVEKNGSKYGPDGLPYLKVLKHSGINSSNAEVLA-LFNVTEADAGE 199
Query: 266 YTCVASNTAAQARYSSKLQVK 286
Y C SN QA S+ L V
Sbjct: 200 YICKVSNYIGQANQSAWLTVL 220
Score = 87.3 bits (216), Expect = 1e-20
Identities = 39/194 (20%), Positives = 52/194 (26%), Gaps = 60/194 (30%)
Query: 12 QTLQPGPAVSLKCIASGNPTPDIGWTLDGFELPTNNRFVIGQFVSGHGDVISHVNISHVT 71
+ V +C A GNP P + W +G E +R + + H +I + V
Sbjct: 29 HAVPAANTVKFRCPAGGNPMPTMRWLKNGKEFKQEHRIGGYKVRNQHWSLI----MESVV 84
Query: 72 VEDGGEYACVAENRAGTCEIT-------PYDSGPYL------------------------ 100
D G Y CV EN G+ T P L
Sbjct: 85 PSDKGNYTCVVENEYGSINHTYHLDVVERSRHRPILQAGLPANASTVVGGDVEFVCKVYS 144
Query: 101 -----IAWFKDGRQIPGRTSST-------------------SLVINPVGREDRGIYQCIA 136
I W K + + L + V D G Y C
Sbjct: 145 DAQPHIQWIKHVEKNGSKYGPDGLPYLKVLKHSGINSSNAEVLALFNVTEADAGEYICKV 204
Query: 137 RRSDGDVAQGSAEL 150
G A SA L
Sbjct: 205 SNYIG-QANQSAWL 217
Score = 73.0 bits (179), Expect = 1e-15
Identities = 22/81 (27%), Positives = 33/81 (40%), Gaps = 1/81 (1%)
Query: 206 PEGARTRVICGVTHGDPPLTIRWLKDGKPLSPRFPVNVSDLDSFSSLLSINSVSAAHSGE 265
P + C G+P T+RWLK+GK + + + L + SV + G
Sbjct: 32 PAANTVKFRCPAG-GNPMPTMRWLKNGKEFKQEHRIGGYKVRNQHWSLIMESVVPSDKGN 90
Query: 266 YTCVASNTAAQARYSSKLQVK 286
YTCV N ++ L V
Sbjct: 91 YTCVVENEYGSINHTYHLDVV 111
Score = 66.5 bits (162), Expect = 3e-13
Identities = 16/97 (16%), Positives = 28/97 (28%), Gaps = 6/97 (6%)
Query: 2 PPILTYSFIEQTLQPGPAVSLKCIASGNPTPDIGWTLDGFELPTNN------RFVIGQFV 55
P + + G V C + P I W + + + +
Sbjct: 118 PILQAGLPANASTVVGGDVEFVCKVYSDAQPHIQWIKHVEKNGSKYGPDGLPYLKVLKHS 177
Query: 56 SGHGDVISHVNISHVTVEDGGEYACVAENRAGTCEIT 92
+ + + +VT D GEY C N G +
Sbjct: 178 GINSSNAEVLALFNVTEADAGEYICKVSNYIGQANQS 214
>3jz7_A MCAR, CAR, coxsackievirus and adenovirus receptor homolog; cell
adhesion molecule, immunoglobuline superfamily,
alternative splicing, cell adhesion; 2.19A {Mus
musculus} PDB: 3mj7_B* 2npl_X
Length = 214
Score = 88.2 bits (218), Expect = 3e-21
Identities = 44/269 (16%), Positives = 74/269 (27%), Gaps = 73/269 (27%)
Query: 17 GPAVSLKCIASGNPTPDIGWTLDGFELPTNNRFVIGQFVSGHGDVISHVNISHVTVEDGG 76
G L C + +P ++ P++N+ V + GD I
Sbjct: 15 GETAYLPCKFTLSPEDQGPLDIEWLISPSDNQIVDQVIILYSGDKIYDNYYPD------- 67
Query: 77 EYACVAENRAGTCEITPYDSGPYLIAWFKDGRQIPGRTSSTSLVINPVGREDRGIYQCIA 136
+ R ++ S+ + + D G YQC
Sbjct: 68 -----LKGRVHFTSNDV-------------------KSGDASINVTNLQLSDIGTYQCKV 103
Query: 137 RRSDGDVAQGSAELQLGGLPYVRLIPKVTAIDGEGLSIKCPVAGYPIEEVHWEKVPPKIE 196
+ VA L V + P T +C V G
Sbjct: 104 K-KAPGVANKKFLLT------VLVKPSGT---------RCFVDGSEEI------------ 135
Query: 197 SFAFPFDGLPEGARTRVICGVTHGDPPLTIRWLKDGKPLSPRFPVNVSDLDSFSSLLSIN 256
G ++ C G PL W K + P + S ++S+
Sbjct: 136 -----------GNDFKLKCEPKEGSLPLQFEWQKLSDSQTMPTPWLA---EMTSPVISVK 181
Query: 257 SVSAAHSGEYTCVASNTAAQARYSSKLQV 285
+ S+ +SG Y+C N + +L V
Sbjct: 182 NASSEYSGTYSCTVQNRVGSDQCMLRLDV 210
Score = 56.2 bits (135), Expect = 1e-09
Identities = 16/88 (18%), Positives = 30/88 (34%), Gaps = 8/88 (9%)
Query: 2 PPILTYSFIEQTLQPGPAVSLKCIAS-GNPTPDIGWTLDGFELPTNNRFVIGQFVSGHGD 60
P T F++ + + G LKC G+ W ++
Sbjct: 121 KPSGTRCFVDGSEEIGNDFKLKCEPKEGSLPLQFEWQKLSDSQTMPTPWL---AEMTSPV 177
Query: 61 VISHVNISHVTVEDGGEYACVAENRAGT 88
+ + + + E G Y+C +NR G+
Sbjct: 178 IS----VKNASSEYSGTYSCTVQNRVGS 201
Score = 44.3 bits (104), Expect = 1e-05
Identities = 18/126 (14%), Positives = 35/126 (27%), Gaps = 21/126 (16%)
Query: 164 VTAIDGEGLSIKCPVAGYPIE----EVHWEKVPPKIESFAFPFDGLPEGARTRVICGVTH 219
+ GE + C P + ++ W P + +VI +
Sbjct: 10 IEKAKGETAYLPCKFTLSPEDQGPLDIEWLISPSDNQI------------VDQVIILYSG 57
Query: 220 GDPPLTIRWLKDGKPLSPRFPVNVSDLDSFSSLLSINSVSAAHSGEYTCVASNTAAQARY 279
G R +D+ S + +++ ++ + G Y C A
Sbjct: 58 DKIYDNYYPDLKG-----RVHFTSNDVKSGDASINVTNLQLSDIGTYQCKVKKAPGVANK 112
Query: 280 SSKLQV 285
L V
Sbjct: 113 KFLLTV 118
>3ry4_A Low affinity immunoglobulin gamma FC region recep; FC receptor,
CD32, immunoglobulin superfamily, low responder
polymorphism, cell membrane; HET: NAG; 1.50A {Homo
sapiens} PDB: 1fcg_A 3ry5_A 1h9v_A 3d5o_F* 3ry6_C*
2fcb_A
Length = 170
Score = 85.3 bits (211), Expect = 2e-20
Identities = 30/200 (15%), Positives = 52/200 (26%), Gaps = 55/200 (27%)
Query: 88 TCEITPYDSGPYLIAWFKDGRQIPGRTSSTSLVINPVGREDRGIYQCIARRSDGDVAQGS 147
TC+ I WF +G IP T + D G Y C ++
Sbjct: 25 TCQGAR-SPESDSIQWFHNGNLIP--THTQPSYRFKANNNDSGEYTCQTGQTSL---SDP 78
Query: 148 AELQLGGLPYVRLIPKVTAIDGEGLSIKCPVAGYPIEEVHWEKVPPKIESFAFPFDGLPE 207
L + V P + +GE + ++C
Sbjct: 79 VHLTVLFEWLVLQTPHLEFQEGETIMLRCHSWKDK------------------------- 113
Query: 208 GARTRVICGVTHGDPPLTIRWLKDGKPLSPRFPVNVSDLDSFSSLLSINSVSAAHSGEYT 267
P + + + ++GK SI + +HSG+Y
Sbjct: 114 --------------PLVKVTFFQNGKSQKFS---------HLDPTFSIPQANHSHSGDYH 150
Query: 268 CVASNTAAQARYSS-KLQVK 286
C + + V+
Sbjct: 151 CTGNIGYTLFSSKPVTITVQ 170
Score = 76.4 bits (188), Expect = 3e-17
Identities = 24/180 (13%), Positives = 44/180 (24%), Gaps = 47/180 (26%)
Query: 3 PILTYSFIEQTLQPGPAVSLKCIASGNPTPD-IGWTLDGFELPTNNRFVIGQFVSGHGDV 61
+L + +V+L C + +P D I W +G +PT+ +
Sbjct: 5 AVLKLEPPWINVLQEDSVTLTCQGARSPESDSIQWFHNGNLIPTHTQ------------- 51
Query: 62 ISHVNISHVTVEDGGEYACVAENRAG------------------------------TCEI 91
D GEY C + C
Sbjct: 52 --PSYRFKANNNDSGEYTCQTGQTSLSDPVHLTVLFEWLVLQTPHLEFQEGETIMLRCH- 108
Query: 92 TPYDSGPYLIAWFKDGRQIPGRTSSTSLVINPVGREDRGIYQCIARRSDGDVAQGSAELQ 151
+ D + +F++G+ + I G Y C + +
Sbjct: 109 SWKDKPLVKVTFFQNGKSQKFSHLDPTFSIPQANHSHSGDYHCTGNIGYTLFSSKPVTIT 168
Score = 51.0 bits (122), Expect = 4e-08
Identities = 11/68 (16%), Positives = 20/68 (29%), Gaps = 11/68 (16%)
Query: 207 EGARTRVICGVTHGDPPLTIRWLKDGKPLSPRFPVNVSDLDSFSSLLSINSVSAAHSGEY 266
+ + C +I+W +G + + + SGEY
Sbjct: 18 QEDSVTLTCQGARSPESDSIQWFHNGNLIPTH-----------TQPSYRFKANNNDSGEY 66
Query: 267 TCVASNTA 274
TC T+
Sbjct: 67 TCQTGQTS 74
Score = 44.0 bits (104), Expect = 9e-06
Identities = 10/89 (11%), Positives = 22/89 (24%), Gaps = 16/89 (17%)
Query: 1 TPPILTYSFIEQTLQPGPAVSLKCIASGNPTP-DIGWTLDGFELPTNNRFVIGQFVSGHG 59
+L Q G + L+C + + + + +G ++
Sbjct: 86 EWLVLQTP--HLEFQEGETIMLRCHSWKDKPLVKVTFFQNGKSQKFSHLD---------- 133
Query: 60 DVISHVNISHVTVEDGGEYACVAENRAGT 88
+I G+Y C
Sbjct: 134 ---PTFSIPQANHSHSGDYHCTGNIGYTL 159
>1sy6_A T-cell surface glycoprotein CD3 gamma/epsilon chain; CD3 epsilon,
OKT3 FAB, signaling protein/antibiotic complex; 2.10A
{Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 2atp_E*
Length = 204
Score = 83.8 bits (206), Expect = 1e-19
Identities = 31/184 (16%), Positives = 48/184 (26%), Gaps = 27/184 (14%)
Query: 101 IAWFKDGRQI-PGRTSSTSLVINPVGREDRGIYQCIARRSDGDVAQ-----GSAELQLGG 154
I WFKDG+ I + ++ RG+YQC ++ Q GSA+
Sbjct: 32 ITWFKDGKMIGFLTEDKKKWNLGSNAKDPRGMYQCKGSQNKSKPLQVYYRMGSADDAKKD 91
Query: 155 LPYVRLIPKVTAIDGEGLSIKCPVAGYPIEEVHWEKVPPKIESFAFPFDGLPEGARTRVI 214
K A ++ + P+ G +
Sbjct: 92 AAKKDDAKKDDA-----------------KKDGSDGNEEMGGITQTPYKVSISGTTVILT 134
Query: 215 CGVTHGDPPLTIRWLKDGKPLSPRFPVNVSDLDSFSSLLSINSVSAAHSGEYTCVASNTA 274
C P I W + K + D L SG Y C +
Sbjct: 135 CPQ---YPGSEILWQHNDKNIGGDEDDKNIGSDE-DHLSLKEFSELEQSGYYVCYPRGSK 190
Query: 275 AQAR 278
+
Sbjct: 191 PEDA 194
Score = 53.7 bits (128), Expect = 8e-09
Identities = 14/75 (18%), Positives = 21/75 (28%), Gaps = 12/75 (16%)
Query: 203 DGLPEGARTRVICGVTHGDPPLTIRWLKDGKPLSPRFPVNVSDLDSFSSLLSINSVSAAH 262
E + C I W KDGK + L ++ S +
Sbjct: 13 YDYQEDGSVLLTCDA----EAKNITWFKDGKMIGF--------LTEDKKKWNLGSNAKDP 60
Query: 263 SGEYTCVASNTAAQA 277
G Y C S ++
Sbjct: 61 RGMYQCKGSQNKSKP 75
Score = 50.3 bits (119), Expect = 1e-07
Identities = 12/72 (16%), Positives = 19/72 (26%), Gaps = 7/72 (9%)
Query: 17 GPAVSLKCIASGNPTPDIGWTLDGFELPTNNRFVIGQFVSGHGDVISHVNISHVTVEDGG 76
G V L C P +I W + + + G + + +E G
Sbjct: 128 GTTVILTCPQ--YPGSEILWQHNDKNIGGDEDD----KNIGSDEDHLSL-KEFSELEQSG 180
Query: 77 EYACVAENRAGT 88
Y C
Sbjct: 181 YYVCYPRGSKPE 192
>2fbo_J V1V2;, variable region-containing chitin-binding protein 3;
immunoglobulin, VCBP, V-type, V SET, immune system;
1.85A {Branchiostoma floridae}
Length = 250
Score = 84.6 bits (208), Expect = 2e-19
Identities = 41/287 (14%), Positives = 67/287 (23%), Gaps = 62/287 (21%)
Query: 11 EQTLQPGPAVSLKC---IASGNPTPDIGWTLDGFELPTNNRFVIGQFVSGHGDVISHVNI 67
E + G V L C +A+ P I W + F G G
Sbjct: 11 EVEVHAGGTVELPCSYQLANDTQPPVISWLKGASPDRSTKVFKGNYNWQGEGLGFVE--- 67
Query: 68 SHVTVEDGGEYACVAENRAGTCEITPYDSGPYLIAWFKDGRQIPGRTSSTSLVINPVGRE 127
S E G++ GR ++ +L + V +
Sbjct: 68 SDSYKESFGDFL---------------------------GRASVANLAAPTLRLTHVHPQ 100
Query: 128 DRGIYQCIARRSDGDVAQGSAELQLGGLPYVRLIPK---------VTAIDGEGLSIKCPV 178
D G Y C + G + V +G +++ CP
Sbjct: 101 DGGRYWCQVAQWSIRTEFGLDAKSVVLKVTGHTPSNNVHVSTAEVVQVDEGNDITMTCPC 160
Query: 179 AGYPIEEVHWEKVPPKIESFAFPFDGLPEGARTRVICGVTHGDPPLTIRWLKDGKPLSPR 238
V W P E+ T PL + S
Sbjct: 161 TDCANANVTWYTGPTFFEN------------------YETGTYQPLANKNQFGITWFSSE 202
Query: 239 FPVNVSDLDSFSSLLSINSVSAAHSGEYTCVASNTAAQARYSSKLQV 285
S + + L I + +G C + + +
Sbjct: 203 IAGRASFSGARN--LVIRAAKITDAGRVWCELATGQGELDADRSSTI 247
Score = 58.0 bits (139), Expect = 4e-10
Identities = 9/103 (8%), Positives = 23/103 (22%), Gaps = 16/103 (15%)
Query: 2 PPILTYSFIEQTLQPGPAVSLKCIASGNPTPDIGWTLDGFELPTNNRFVIGQFVSGHGDV 61
+ + + G +++ C + ++ W + +
Sbjct: 136 NNVHVSTAEVVQVDEGNDITMTCPCTDCANANVTWYTGPTFFENYETGTYQPLANKNQFG 195
Query: 62 ISHVN----------------ISHVTVEDGGEYACVAENRAGT 88
I+ + I + D G C G
Sbjct: 196 ITWFSSEIAGRASFSGARNLVIRAAKITDAGRVWCELATGQGE 238
>2ocw_A Polymeric-immunoglobulin receptor; SC, secretory, antibody,
immunity, immune system; NMR {Homo sapiens} PDB: 3chn_S
3cm9_S 3chn_J 3cm9_J
Length = 585
Score = 87.0 bits (214), Expect = 2e-19
Identities = 45/340 (13%), Positives = 92/340 (27%), Gaps = 93/340 (27%)
Query: 2 PPILTYSFIEQTLQPGPAVSLKCIASGNPTPDIGW--------------TLDGFELPTNN 47
P L T+ G V++ C +
Sbjct: 112 GPGLLNDTKVYTVDLGRTVTINCPFKTENAQKRKSLYKQIGLYPVLVIDSSGYVNPNYTG 171
Query: 48 RFVIGQFVSGHGDVISHVNISHVTVEDGGEYACVAENRAGT------------------- 88
R + + G G ++ V I+ + + D G+Y C A + + +
Sbjct: 172 RIRL--DIQGTGQLLFSVVINQLRLSDAGQYLCQAGDDSNSNKKNADLQVLKPEPELVYE 229
Query: 89 ---------CEITPYDSG------------PYLIAWFKDGRQIP---GRTSST------- 117
C + P + + G++ P GR
Sbjct: 230 DLRGSVTFHCALGPEVANVAKFLCRQSSGENCDVVVNTLGKRAPAFEGRILLNPQDKDGS 289
Query: 118 -SLVINPVGREDRGIYQCIARRSDGDVAQGSAELQL----GGLPYVRLIPKVTAIDGEGL 172
S+VI + +ED G Y C A + R V + G +
Sbjct: 290 FSVVITGLRKEDAGRYLCGAHSDGQLQEGSPIQAWQLFVNEESTIPRSPTVVKGVAGSSV 349
Query: 173 SIKCPVAGYPIEEVHWEKVPPKIESFAFPFDGLPEGARTRVICGVTHGDPPLTIRWLKDG 232
++ CP + + + + ++ P EG G L++
Sbjct: 350 AVLCPYNRKESKSIKYWCLWEGAQNGRCPLLVDSEGWVKAQYEG------RLSLL----- 398
Query: 233 KPLSPRFPVNVSDLDSFSSLLSINSVSAAHSGEYTCVASN 272
+ + + + +N +++ +G Y C+ +
Sbjct: 399 -----------EEPGNGTFTVILNQLTSRDAGFYWCLTNG 427
Score = 85.1 bits (209), Expect = 8e-19
Identities = 49/343 (14%), Positives = 80/343 (23%), Gaps = 112/343 (32%)
Query: 15 QPGPAVSLKCIASGNPTPDIGWTLDGFELP-TNNRFVIGQFVSGHGDVISHVNISHVTVE 73
+ C S D+ G P R ++ V I+ + E
Sbjct: 244 EVANVAKFLCRQSSGENCDVVVNTLGKRAPAFEGRILLNPQDKDG---SFSVVITGLRKE 300
Query: 74 DGGEYACVAENRAG-------------------------------------TCEITPYDS 96
D G Y C A + C +S
Sbjct: 301 DAGRYLCGAHSDGQLQEGSPIQAWQLFVNEESTIPRSPTVVKGVAGSSVAVLCPYNRKES 360
Query: 97 GPYLIAWFKDGRQIP------------------GRTS--------STSLVINPVGREDRG 130
+ W GR S + ++++N + D G
Sbjct: 361 -KSIKYWCLWEGAQNGRCPLLVDSEGWVKAQYEGRLSLLEEPGNGTFTVILNQLTSRDAG 419
Query: 131 IYQCIARRSDGDVAQGSAELQLGGLPYVRLIPKVTAIDGEGLSIKCPVAGYPIEEVHWEK 190
Y C+ D + G P +++ VTA+ GE L + C
Sbjct: 420 FYWCLTNG-DTLWRTTVEIKIIEGEPNLKVPGNVTAVLGETLKVPCHF------------ 466
Query: 191 VPPKIESFAFPFDGLPEGARTRVICGVTHGDPPLTIRWLKDGKPLSPRFP------VNVS 244
P +W G P
Sbjct: 467 ---------------PCKFS---------SYEKYWCKWNNTGCQALPSQDEGPSKAFVNC 502
Query: 245 DLDSFSSLLSINSVSAAHSGEYTCVASNTAAQARYSS-KLQVK 286
D +S L++N V+ A G Y C ++ + V+
Sbjct: 503 DENSRLVSLTLNLVTRADEGWYWCGVKQGHFYGETAAVYVAVE 545
Score = 77.7 bits (190), Expect = 3e-16
Identities = 48/353 (13%), Positives = 83/353 (23%), Gaps = 113/353 (32%)
Query: 11 EQTLQPGPAVSLKC---IASGNPTPDIGWTLDG--------------FELPTNNRFVIGQ 53
E G +VS+ C S N W G R +
Sbjct: 9 EVNSVEGNSVSITCYYPPTSVNRHTRKYWCRQGARGGCITLISSEGYVSSKYAGRANLTN 68
Query: 54 FVSGHGDVISHVNISHVTVEDGGEYACVAENRAG-------------------------- 87
F + VNI+ ++ +D G Y C +
Sbjct: 69 F---PENGTFVVNIAQLSQDDSGRYKCGLGINSRGLSFDVSLEVSQGPGLLNDTKVYTVD 125
Query: 88 -------TCEITPYDSGPYLIAWFKDGRQIPGRTSSTS---------------------- 118
C ++ + +K P +S
Sbjct: 126 LGRTVTINCPFKT-ENAQKRKSLYKQIGLYPVLVIDSSGYVNPNYTGRIRLDIQGTGQLL 184
Query: 119 --LVINPVGREDRGIYQCIARRSDGDVAQGSAELQLGGLPYVRLIPKVTAIDGEGLSIKC 176
+VIN + D G Y C A + +A+LQ+ + + ++ C
Sbjct: 185 FSVVINQLRLSDAGQYLCQAGDDSNS-NKKNADLQVLKPEPELVYEDL----RGSVTFHC 239
Query: 177 PVAGYPIEEVHWEKVPPKIESFAFPFDGLPEGARTRVICGVTHGDPPLTIRWLKDGKPLS 236
+ + C + + GK
Sbjct: 240 ALGPEVANVAKFL-------------------------CRQS-SGENCDVVVNTLGKRAP 273
Query: 237 P---RFPVNVSDLDSFSSLLSINSVSAAHSGEYTCVASNTAAQARYSSKLQVK 286
R +N D D S++ I + +G Y C A + S +
Sbjct: 274 AFEGRILLNPQDKDGSFSVV-ITGLRKEDAGRYLCGAHSDGQLQEGSPIQAWQ 325
Score = 63.1 bits (152), Expect = 2e-11
Identities = 31/249 (12%), Positives = 59/249 (23%), Gaps = 71/249 (28%)
Query: 11 EQTLQPGPAVSLKCIASGNPTPDIGW-----------------TLDGFELPTNNRFVIGQ 53
G +V++ C + + I + + + R +
Sbjct: 340 VVKGVAGSSVAVLCPYNRKESKSIKYWCLWEGAQNGRCPLLVDSEGWVKAQYEGRLSL-- 397
Query: 54 FVSGHGDVISHVNISHVTVEDGGEYACVAENRAG-------------------------- 87
+ G+ V ++ +T D G Y C+
Sbjct: 398 -LEEPGNGTFTVILNQLTSRDAGFYWCLTNGDTLWRTTVEIKIIEGEPNLKVPGNVTAVL 456
Query: 88 ------TCEITPYDSGP--YLIAWFKDGRQIPGRT---------------SSTSLVINPV 124
C S Y W G Q SL +N V
Sbjct: 457 GETLKVPCHFPCKFSSYEKYWCKWNNTGCQALPSQDEGPSKAFVNCDENSRLVSLTLNLV 516
Query: 125 GREDRGIYQCIARRSDGDVAQGSAELQLGGLPYVRLIPKVTAIDGEGLSIKCPV-AGYPI 183
R D G Y C ++ + + + V+ + + + +G+
Sbjct: 517 TRADEGWYWCGVKQGHFYGETAAVYVAVEERK-AAGSRDVSLAKADAAPDEKVLDSGFRE 575
Query: 184 EEVHWEKVP 192
E + P
Sbjct: 576 IENKAIQDP 584
>2edj_A Roundabout homolog 2; KIAA1568 protein, beta sandwich, structural
genomics, NPPSFA, national project on protein
structural and functional analyses; NMR {Homo sapiens}
Length = 100
Score = 79.0 bits (195), Expect = 5e-19
Identities = 27/87 (31%), Positives = 39/87 (44%), Gaps = 7/87 (8%)
Query: 2 PPILTYSFIEQTLQPGPAVSLKCIASGNPTPDIGWTLDGFELPTNNRFVIGQFVSGHGDV 61
PPI+ QTL LKC A+G+P P I W +GF P + + G +
Sbjct: 8 PPIILQGPANQTLAVDGTALLKCKATGDPLPVISWLKEGFTFPGRDPRAT---IQEQGTL 64
Query: 62 ISHVNISHVTVEDGGEYACVAENRAGT 88
I ++ + D G Y CVA + +G
Sbjct: 65 Q----IKNLRISDTGTYTCVATSSSGE 87
Score = 63.6 bits (155), Expect = 3e-13
Identities = 24/83 (28%), Positives = 39/83 (46%), Gaps = 6/83 (7%)
Query: 205 LPEGARTRVICGVTHGDPPLTIRWLKDGKPLSPRFP-VNVSDLDSFSSLLSINSVSAAHS 263
L + C T GDP I WLK+G R P + + L I ++ + +
Sbjct: 20 LAVDGTALLKCKAT-GDPLPVISWLKEGFTFPGRDPRATIQE----QGTLQIKNLRISDT 74
Query: 264 GEYTCVASNTAAQARYSSKLQVK 286
G YTCVA++++ + +S+ L V
Sbjct: 75 GTYTCVATSSSGETSWSAVLDVT 97
Score = 48.9 bits (117), Expect = 5e-08
Identities = 19/57 (33%), Positives = 24/57 (42%), Gaps = 7/57 (12%)
Query: 101 IAWFKDGRQIPGRTS------STSLVINPVGREDRGIYQCIARRSDGDVAQGSAELQ 151
I+W K+G PGR +L I + D G Y C+A S G SA L
Sbjct: 40 ISWLKEGFTFPGRDPRATIQEQGTLQIKNLRISDTGTYTCVATSSSG-ETSWSAVLD 95
>1wwb_X Protein (brain derived neurotrophic factor receptor TRKB); TRK
receptor, receptor tyrosine kinase, 3D-domain swapping,
transferase; 2.10A {Homo sapiens} SCOP: b.1.1.4 PDB:
1hcf_X
Length = 103
Score = 79.0 bits (195), Expect = 7e-19
Identities = 16/100 (16%), Positives = 36/100 (36%), Gaps = 9/100 (9%)
Query: 190 KVPPKIESFAFPFDGLPEGARTRVICGVTHGDPPLTIRWLKDGKPLSP----RFPVNVSD 245
P I P + V G+P ++W +G L+ ++V++
Sbjct: 2 HFAPTITFLESP----TSDHHWCIPFTVK-GNPKPALQWFYNGAILNESKYICTKIHVTN 56
Query: 246 LDSFSSLLSINSVSAAHSGEYTCVASNTAAQARYSSKLQV 285
+ L +++ + ++G+YT +A N +
Sbjct: 57 HTEYHGCLQLDNPTHMNNGDYTLIAKNEYGKDEKQISAHF 96
Score = 73.2 bits (180), Expect = 8e-17
Identities = 16/77 (20%), Positives = 29/77 (37%)
Query: 16 PGPAVSLKCIASGNPTPDIGWTLDGFELPTNNRFVIGQFVSGHGDVISHVNISHVTVEDG 75
+ GNP P + W +G L + V+ H + + + + T +
Sbjct: 15 SDHHWCIPFTVKGNPKPALQWFYNGAILNESKYICTKIHVTNHTEYHGCLQLDNPTHMNN 74
Query: 76 GEYACVAENRAGTCEIT 92
G+Y +A+N G E
Sbjct: 75 GDYTLIAKNEYGKDEKQ 91
Score = 41.7 bits (98), Expect = 2e-05
Identities = 11/71 (15%), Positives = 20/71 (28%), Gaps = 14/71 (19%)
Query: 101 IAWFKDGRQIP-------------GRTSSTSLVINPVGREDRGIYQCIARRSDGDVAQGS 147
+ WF +G + L ++ + G Y IA+ G +
Sbjct: 33 LQWFYNGAILNESKYICTKIHVTNHTEYHGCLQLDNPTHMNNGDYTLIAKNEYG-KDEKQ 91
Query: 148 AELQLGGLPYV 158
G P +
Sbjct: 92 ISAHFMGWPGI 102
>1fnl_A Low affinity immunoglobulin gamma FC region receptor III-B; beta
sandwich, immunoglobulin-like, immune system receptor;
1.80A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1e4j_A
1e4k_C* 1t83_C* 1t89_C* 3ay4_C*
Length = 175
Score = 80.7 bits (199), Expect = 1e-18
Identities = 24/200 (12%), Positives = 51/200 (25%), Gaps = 55/200 (27%)
Query: 88 TCEITPYDSGPYLIAWFKDGRQIPGRTSSTSLVINPVGREDRGIYQCIARRSDGDVAQGS 147
C+ Y WF + I + ++S I+ D G Y+C S
Sbjct: 28 KCQ-GAYSPEDNSTQWFHNESLIS--SQASSYFIDAATVNDSGEYRCQTNLSTL---SDP 81
Query: 148 AELQLGGLPYVRLIPKVTAIDGEGLSIKCPVAGYPIEEVHWEKVPPKIESFAFPFDGLPE 207
+L++ + P+ + + + ++C
Sbjct: 82 VQLEVHIGWLLLQAPRWVFKEEDPIHLRCHSWK--------------------------- 114
Query: 208 GARTRVICGVTHGDPPLTIRWLKDGKPLSPRFPVNVSDLDSFSSLLSINSVSAAHSGEYT 267
+ +L++GK +S I + SG Y
Sbjct: 115 ------------NTALHKVTYLQNGKDRKYF---------HHNSDFHIPKATLKDSGSYF 153
Query: 268 CVASNTAAQARYSS-KLQVK 286
C + + + +
Sbjct: 154 CRGLVGSKNVSSETVNITIT 173
Score = 71.8 bits (176), Expect = 2e-15
Identities = 22/181 (12%), Positives = 50/181 (27%), Gaps = 47/181 (25%)
Query: 2 PPILTYSFIEQTLQPGPAVSLKCIASGNPTPD-IGWTLDGFELPTNNRFVIGQFVSGHGD 60
++ ++ +V+LKC + +P + W + + +
Sbjct: 7 KAVVFLEPQWYSVLEKDSVTLKCQGAYSPEDNSTQWFHNESLISSQAS------------ 54
Query: 61 VISHVNISHVTVEDGGEYACVAENRAG------------------------------TCE 90
I TV D GEY C C
Sbjct: 55 ---SYFIDAATVNDSGEYRCQTNLSTLSDPVQLEVHIGWLLLQAPRWVFKEEDPIHLRCH 111
Query: 91 ITPYDSGPYLIAWFKDGRQIPGRTSSTSLVINPVGREDRGIYQCIARRSDGDVAQGSAEL 150
+ ++ + + + ++G+ ++ I +D G Y C +V+ + +
Sbjct: 112 -SWKNTALHKVTYLQNGKDRKYFHHNSDFHIPKATLKDSGSYFCRGLVGSKNVSSETVNI 170
Query: 151 Q 151
Sbjct: 171 T 171
Score = 47.9 bits (114), Expect = 5e-07
Identities = 12/68 (17%), Positives = 24/68 (35%), Gaps = 11/68 (16%)
Query: 207 EGARTRVICGVTHGDPPLTIRWLKDGKPLSPRFPVNVSDLDSFSSLLSINSVSAAHSGEY 266
E + C + + +W + +S S +S I++ + SGEY
Sbjct: 21 EKDSVTLKCQGAYSPEDNSTQWFHNESLIS-----------SQASSYFIDAATVNDSGEY 69
Query: 267 TCVASNTA 274
C + +
Sbjct: 70 RCQTNLST 77
>3irg_A Titin; IG-like, titin, OBSL1, complex, alternative splicing,
ATP-binding, calcium, calmodulin-binding,
cardiomyopathy; 1.30A {Homo sapiens} PDB: 3knb_A 3q5o_A
2wp3_T* 2wwk_T 2wwm_D 2y9r_T*
Length = 100
Score = 78.5 bits (194), Expect = 1e-18
Identities = 22/92 (23%), Positives = 44/92 (47%), Gaps = 3/92 (3%)
Query: 1 TPPILTYSFIEQTLQPGPAVSLKCIASGNPTPDIGWTLDGFELPTNNRFVIGQFVSGHGD 60
PP + + ++ G +++ C +G PTP++ W+ G ++ + + G+F + D
Sbjct: 4 IPPKIEALPSDISIDEGKVLTVACAFTGEPTPEVTWSCGGRKIHSQEQ---GRFHIENTD 60
Query: 61 VISHVNISHVTVEDGGEYACVAENRAGTCEIT 92
++ + I V +DGG Y N G+ T
Sbjct: 61 DLTTLIIMDVQKQDGGLYTLSLGNEFGSDSAT 92
Score = 69.3 bits (170), Expect = 2e-15
Identities = 24/99 (24%), Positives = 42/99 (42%), Gaps = 7/99 (7%)
Query: 191 VPPKIESFAFPFD-GLPEGARTRVICGVTHGDPPLTIRWLKDGKPL--SPRFPVNVSDLD 247
+PPKIE+ P D + EG V C T G+P + W G+ + + ++ + D
Sbjct: 4 IPPKIEAL--PSDISIDEGKVLTVACAFT-GEPTPEVTWSCGGRKIHSQEQGRFHIENTD 60
Query: 248 SFSSLLSINSVSAAHSGEYTCVASNTAAQARYSSKLQVK 286
++L+ I V G YT N + + ++
Sbjct: 61 DLTTLI-IMDVQKQDGGLYTLSLGNEFGSDSATVNIHIR 98
>1jbj_A CD3 epsilon and gamma ectodomain fragment complex; beta-sheet,
C2-SET immunoglobulin superfamily, H-bonded G strand
PAIR, single-chain; NMR {Mus musculus} SCOP: b.1.1.4
b.1.1.4 PDB: 1xmw_A
Length = 186
Score = 80.7 bits (198), Expect = 1e-18
Identities = 39/199 (19%), Positives = 67/199 (33%), Gaps = 37/199 (18%)
Query: 88 TCEITPYDSGPYLIAWFKDGRQIPGRTSSTSLVINPVGR-EDRGIYQCIARRSDGDVAQG 146
TC + ++ + W K+G+++P LV+ ED G Y C S+ +
Sbjct: 20 TCPLDSDEN----LKWEKNGQELPQ-KHDKHLVLQDFSEVEDSGYYVCYTPASNKNT--- 71
Query: 147 SAELQLGGLPYVRLIPKVTAIDGEGLSIKCPVAGYPIEEVHWEKVPPKIESFAFPFDGLP 206
Y+ L +V + D + DG
Sbjct: 72 ----------YLYLKARVGSADDAKKDAAKKDDAKKDDAKKD-GSQTNKAKNLVQVDGSR 120
Query: 207 EGARTRVICGVTHGDPPLTIRWLKDGKPLSPRFPVNVSDLDSFSSLLSINSVSAAHSGEY 266
+ CG+ TI+WLKDG +SP L++ + ++ + + G Y
Sbjct: 121 GDGSVLLTCGL----TDKTIKWLKDGSIISP--------LNATKNTWNLGNNAKDPRGTY 168
Query: 267 TCVASNTAAQARYSSKLQV 285
C + S+ LQV
Sbjct: 169 QCQGAK-----ETSNPLQV 182
Score = 51.4 bits (122), Expect = 3e-08
Identities = 30/185 (16%), Positives = 47/185 (25%), Gaps = 71/185 (38%)
Query: 16 PGPAVSLKCIASGNPTPDIGWTLDGFELPTNNRFVIGQFVSGHGDVISHVNISHVT-VED 74
G +V L C + ++ W +G ELP + H+ + + VED
Sbjct: 13 SGTSVELTCPL--DSDENLKWEKNGQELPQKHD--------------KHLVLQDFSEVED 56
Query: 75 GGEYACVAEN---------RAGTCEITPYDSGPYL------------------------- 100
G Y C +A
Sbjct: 57 SGYYVCYTPASNKNTYLYLKARVGSADDAKKDAAKKDDAKKDDAKKDGSQTNKAKNLVQV 116
Query: 101 -------------------IAWFKDGRQI-PGRTSSTSLVINPVGREDRGIYQCIARRSD 140
I W KDG I P + + + ++ RG YQC +
Sbjct: 117 DGSRGDGSVLLTCGLTDKTIKWLKDGSIISPLNATKNTWNLGNNAKDPRGTYQCQGAKET 176
Query: 141 GDVAQ 145
+ Q
Sbjct: 177 SNPLQ 181
Score = 35.2 bits (80), Expect = 0.011
Identities = 12/83 (14%), Positives = 20/83 (24%), Gaps = 15/83 (18%)
Query: 6 TYSFIEQTLQPGPAVSLKCIASGNPTPDIGWTLDGFELPTNNRFVIGQFVSGHGDVISHV 65
+ +V L C + I W DG + N +
Sbjct: 111 KNLVQVDGSRGDGSVLLTCGLTDKT---IKWLKDGSIISPLNATK------------NTW 155
Query: 66 NISHVTVEDGGEYACVAENRAGT 88
N+ + + G Y C
Sbjct: 156 NLGNNAKDPRGTYQCQGAKETSN 178
>3qr2_A Basigin; CD147, EMMPRIN, immunoglobulin-like domain, beta sheet,
STRU genomics, berkeley structural genomics center,
BSGC, cell A; 2.30A {Homo sapiens} PDB: 3qqn_A
Length = 137
Score = 78.9 bits (194), Expect = 1e-18
Identities = 23/100 (23%), Positives = 36/100 (36%), Gaps = 8/100 (8%)
Query: 1 TPPILTYSFIEQTLQPGPAVSLKCIASGNPTPDIGWTLDGFELPTNNRFV--------IG 52
+ + Q G +V L C A G+P P+I W +G + +
Sbjct: 20 HMAGFVQAPLSQQRWVGGSVELHCEAVGSPVPEIQWWFEGQGPNDICSQLWDGARLDRVH 79
Query: 53 QFVSGHGDVISHVNISHVTVEDGGEYACVAENRAGTCEIT 92
+ H S ++I + ED G Y C A N +T
Sbjct: 80 IHATYHQHAASTISIDTLVEEDTGTYECRASNDPDRNHLT 119
Score = 59.3 bits (143), Expect = 3e-11
Identities = 19/93 (20%), Positives = 36/93 (38%), Gaps = 13/93 (13%)
Query: 206 PEGARTRVICGVTHGDPPLTIRWLKDGKPLSP------------RFPVNVSDLDSFSSLL 253
G + C G P I+W +G+ + R ++ + +S +
Sbjct: 34 WVGGSVELHCEAV-GSPVPEIQWWFEGQGPNDICSQLWDGARLDRVHIHATYHQHAASTI 92
Query: 254 SINSVSAAHSGEYTCVASNTAAQARYSSKLQVK 286
SI+++ +G Y C ASN + + +VK
Sbjct: 93 SIDTLVEEDTGTYECRASNDPDRNHLTRAPRVK 125
>3caf_A Fibroblast growth factor receptor 2; FGFR2, D2, ATP-binding,
disease MU ectodermal dysplasia, glycoprotein,
heparin-binding, immuno domain, kinase; 1.96A {Homo
sapiens} PDB: 3cu1_A* 3euu_A 3dar_A 1wvz_A
Length = 100
Score = 77.9 bits (192), Expect = 2e-18
Identities = 23/81 (28%), Positives = 33/81 (40%), Gaps = 4/81 (4%)
Query: 12 QTLQPGPAVSLKCIASGNPTPDIGWTLDGFELPTNNRFVIGQFVSGHGDVISHVNISHVT 71
+ V +C A GNP P + W +G E +R + + H +I + V
Sbjct: 18 HAVPAANTVKFRCPAGGNPMPTMRWLKNGKEFKQEHRIGGYKVRNQHWSLI----MESVV 73
Query: 72 VEDGGEYACVAENRAGTCEIT 92
D G Y CV EN G+ T
Sbjct: 74 PSDKGNYTCVVENEYGSINHT 94
Score = 73.2 bits (180), Expect = 8e-17
Identities = 22/80 (27%), Positives = 33/80 (41%), Gaps = 1/80 (1%)
Query: 206 PEGARTRVICGVTHGDPPLTIRWLKDGKPLSPRFPVNVSDLDSFSSLLSINSVSAAHSGE 265
P + C G+P T+RWLK+GK + + + L + SV + G
Sbjct: 21 PAANTVKFRCPAG-GNPMPTMRWLKNGKEFKQEHRIGGYKVRNQHWSLIMESVVPSDKGN 79
Query: 266 YTCVASNTAAQARYSSKLQV 285
YTCV N ++ L V
Sbjct: 80 YTCVVENEYGSINHTYHLDV 99
Score = 45.5 bits (108), Expect = 8e-07
Identities = 13/60 (21%), Positives = 22/60 (36%), Gaps = 10/60 (16%)
Query: 101 IAWFKDGRQIPG---------RTSSTSLVINPVGREDRGIYQCIARRSDGDVAQGSAELQ 151
+ W K+G++ R SL++ V D+G Y C+ G + L
Sbjct: 40 MRWLKNGKEFKQEHRIGGYKVRNQHWSLIMESVVPSDKGNYTCVVENEYG-SINHTYHLD 98
>3kvq_A Vascular endothelial growth factor receptor 2; vegfr2,
angiogenesis, ATP-binding, developmental protein,
differentiation, glycoprotein; 2.70A {Homo sapiens}
Length = 108
Score = 77.8 bits (192), Expect = 2e-18
Identities = 26/89 (29%), Positives = 37/89 (41%), Gaps = 7/89 (7%)
Query: 2 PPILTYSFIEQTLQPGPAVSLKCIASGNPTPDIGWTLDGFELPTNNRFVIGQFVSGHGDV 61
P +T + QT G ++ + C ASGNP P I W D L ++ V+
Sbjct: 10 APTITGNLENQTTSIGESIEVSCTASGNPPPQIMWFKDNETLVEDSGIVLKDGNRN---- 65
Query: 62 ISHVNISHVTVEDGGEYACVAENRAGTCE 90
+ I V ED G Y C A + G +
Sbjct: 66 ---LTIRRVRKEDEGLYTCQACSVLGCAK 91
Score = 70.4 bits (173), Expect = 1e-15
Identities = 25/101 (24%), Positives = 37/101 (36%), Gaps = 11/101 (10%)
Query: 189 EKVPPKIESFAFPFDG-LPEGARTRVICGVTHGDPPLTIRWLKDGKPL--SPRFPVNVSD 245
E+V P I + G V C + G+PP I W KD + L
Sbjct: 7 ERVAPTITGN--LENQTTSIGESIEVSCTAS-GNPPPQIMWFKDNETLVEDSGI-----V 58
Query: 246 LDSFSSLLSINSVSAAHSGEYTCVASNTAAQARYSSKLQVK 286
L + L+I V G YTC A + A+ + ++
Sbjct: 59 LKDGNRNLTIRRVRKEDEGLYTCQACSVLGCAKVEAFFIIE 99
Score = 49.3 bits (118), Expect = 5e-08
Identities = 18/62 (29%), Positives = 26/62 (41%), Gaps = 7/62 (11%)
Query: 101 IAWFKDGRQIPG------RTSSTSLVINPVGREDRGIYQCIARRSDGDVAQGSAELQLGG 154
I WFKD + + + +L I V +ED G+Y C A G A+ A + G
Sbjct: 42 IMWFKDNETLVEDSGIVLKDGNRNLTIRRVRKEDEGLYTCQACSVLG-CAKVEAFFIIEG 100
Query: 155 LP 156
Sbjct: 101 AQ 102
>1f2q_A High affinity immunoglobulin epsilon receptor ALP subunit;
immunoglobulin fold, glycoprotein, IGE-binding Pro
immune system; HET: NAG MAN; 2.40A {Homo sapiens} SCOP:
b.1.1.4 b.1.1.4 PDB: 1j86_A* 1rpq_A* 2y7q_A* 1f6a_A*
1j88_A* 1j89_A* 1j87_A*
Length = 176
Score = 79.2 bits (195), Expect = 3e-18
Identities = 29/180 (16%), Positives = 49/180 (27%), Gaps = 47/180 (26%)
Query: 3 PILTYSFIEQTLQPGPAVSLKCIASGNPTPD-IGWTLDGFELPTNNRFVIGQFVSGHGDV 61
P ++ + + G V+L C + W +G N
Sbjct: 5 PKVSLNPPWNRIFKGENVTLTCNGNNFFEVSSTKWFHNGSLSEETN-------------- 50
Query: 62 ISHVNISHVTVEDGGEYACVAENRAG------------------------------TCEI 91
S +NI + ED GEY C + C
Sbjct: 51 -SSLNIVNAKFEDSGEYKCQHQQVNESEPVYLEVFSDWLLLQASAEVVMEGQPLFLRCH- 108
Query: 92 TPYDSGPYLIAWFKDGRQIPGRTSSTSLVINPVGREDRGIYQCIARRSDGDVAQGSAELQ 151
+ Y + ++KDG + + ++ I ED G Y C + D +
Sbjct: 109 GWRNWDVYKVIYYKDGEALKYWYENHNISITNATVEDSGTYYCTGKVWQLDYESEPLNIT 168
Score = 76.9 bits (189), Expect = 3e-17
Identities = 28/200 (14%), Positives = 53/200 (26%), Gaps = 55/200 (27%)
Query: 88 TCEITPYDSGPYLIAWFKDGRQIPGRTSSTSLVINPVGREDRGIYQCIARRSDGDVAQGS 147
TC WF +G +++SL I ED G Y+C ++ +
Sbjct: 25 TCN-GNNFFEVSSTKWFHNGSLSE--ETNSSLNIVNAKFEDSGEYKCQHQQVNESEP--- 78
Query: 148 AELQLGGLPYVRLIPKVTAIDGEGLSIKCPVAGYPIEEVHWEKVPPKIESFAFPFDGLPE 207
L++ + ++G+ L ++C
Sbjct: 79 VYLEVFSDWLLLQASAEVVMEGQPLFLRCHGWR--------------------------- 111
Query: 208 GARTRVICGVTHGDPPLTIRWLKDGKPLSPRFPVNVSDLDSFSSLLSINSVSAAHSGEYT 267
+ + KDG+ L + + +SI + + SG Y
Sbjct: 112 ------------NWDVYKVIYYKDGEALKYWYE---------NHNISITNATVEDSGTYY 150
Query: 268 CVASNTAAQARYSS-KLQVK 286
C + V
Sbjct: 151 CTGKVWQLDYESEPLNITVI 170
Score = 50.7 bits (121), Expect = 6e-08
Identities = 17/85 (20%), Positives = 30/85 (35%), Gaps = 12/85 (14%)
Query: 191 VPPKIE-SFAFPFDGLPEGARTRVICGVTHGDPPLTIRWLKDGKPLSPRFPVNVSDLDSF 249
VP K + S P++ + +G + C + + +W +G
Sbjct: 1 VPQKPKVSLNPPWNRIFKGENVTLTCNGNNFFEVSSTKWFHNGSLSE-----------ET 49
Query: 250 SSLLSINSVSAAHSGEYTCVASNTA 274
+S L+I + SGEY C
Sbjct: 50 NSSLNIVNAKFEDSGEYKCQHQQVN 74
Score = 41.0 bits (96), Expect = 1e-04
Identities = 17/89 (19%), Positives = 30/89 (33%), Gaps = 16/89 (17%)
Query: 1 TPPILTYSFIEQTLQPGPAVSLKCIASGN-PTPDIGWTLDGFELPTNNRFVIGQFVSGHG 59
+L S + + G + L+C N + + DG L
Sbjct: 86 DWLLLQAS--AEVVMEGQPLFLRCHGWRNWDVYKVIYYKDGEALKYWYE----------- 132
Query: 60 DVISHVNISHVTVEDGGEYACVAENRAGT 88
+++I++ TVED G Y C +
Sbjct: 133 --NHNISITNATVEDSGTYYCTGKVWQLD 159
>1z7z_I Intercellular adhesion molecule-1; ICAM-1,kilifi,CD54,human
coxsackievirus A21, cryo-electron
microscopy,virus-receptor complex, icosahedral virus;
HET: NAG NDG; 8.00A {Homo sapiens} SCOP: b.1.1.3 b.1.1.3
b.1.1.4 b.1.1.4 b.1.1.4
Length = 450
Score = 82.6 bits (203), Expect = 5e-18
Identities = 45/325 (13%), Positives = 76/325 (23%), Gaps = 104/325 (32%)
Query: 2 PPILTYSFIEQTLQPGPAVSLKCIASGN---PTPDIGWTLDGFELPTNNRFVIGQFVSGH 58
P + L+ ++ C G + L L V+
Sbjct: 188 PATPPQLVSPRVLEVDTQGTVVCSLDGLFPVSEAQVHLALGDQRLNPT--------VTYG 239
Query: 59 GDVISHVNISHVTVEDGGEYACVAENRAG------------------------------- 87
D S VT ED G G
Sbjct: 240 NDSFSAKASVSVTAEDEGTQRLTCAVILGNQSQETLQTVTIYSFPAPNVILTKPEVSEGT 299
Query: 88 ----TCEITPYDSGPYLIAWFKDGRQIPGRTSSTSLVINPVGREDRGIYQCIAR-RSDGD 142
CE P + Q G L++ ++ + C A G
Sbjct: 300 EVTVKCEAHPRAK----VTLNGVPAQPLG--PRAQLLLKATPEDNGRSFSCSATLEVAGQ 353
Query: 143 VAQGSAELQLGGLPYVRLIPKVTAIDGEGLSIKCPVAGYPIEEVHWEKVPPKIESFAFPF 202
+ + +L V P+++ P
Sbjct: 354 LIHKNQTREL--------------------------------RVL---YGPRLDERDCPG 378
Query: 203 DG-LPEGARTRVICGVTHGDPPLTIRWLKDGKPLSPRFPVNVSDLDSFSSLLSINSVSAA 261
+ PE ++ +C G+P ++ LKDG P + +V+
Sbjct: 379 NWTWPENSQQTPMCQAW-GNPLPELKCLKDGTFPLP--------------IGESVTVTRD 423
Query: 262 HSGEYTCVASNTAAQARYSSKLQVK 286
G Y C A +T + + V
Sbjct: 424 LEGTYLCRARSTQGEVTREVTVNVL 448
Score = 70.7 bits (172), Expect = 5e-14
Identities = 35/320 (10%), Positives = 77/320 (24%), Gaps = 90/320 (28%)
Query: 11 EQTLQPGPAVSLKCIASGNPTPDIGWTLDGFELPTNNRFVIGQFVSGHGDVISHVNISHV 70
+ L G +V + C S + +G E P + ++ G+ +S+V
Sbjct: 8 KVILPRGGSVLVTCSTSCDQPMLLGI-----ETPLPKKELLLP-----GNNRKVYELSNV 57
Query: 71 TVEDGGEYACVAENRAGTC---------------EITPYDSGPYL--------------- 100
+ + C + G E+ P S +
Sbjct: 58 Q--EDSQPMCYSNCPDGQSTAKTFLTVYWTPERVELAPLPSWQPVGKNLTLRCQVEGGAP 115
Query: 101 -----IAWFKDGRQIPGRT-----SSTSLVINPVGREDRGIYQCIARRSDGDVAQGSAEL 150
+ + +++ + + + + C
Sbjct: 116 RANLTVVLLRGEKELKREPAVGEPAEVTTTVLVRRDHHGANFSCRTE------------- 162
Query: 151 QLGGLPYVRLIPKVTAIDGEGLSIKCPVAGYPIEEVHWEKVPPKIESFAFPFDGLPEGAR 210
+ +GL + + + V P L +
Sbjct: 163 --------------LDLRPQGLELFENTSAPYQLQTF---VLPATPPQLVSPRVLEVDTQ 205
Query: 211 TRVICGVTHGDP--PLTIRWLKDGKPLSPRFPVNVSDLDSFSSLLSINSVSAAHSGEY-- 266
V+C + P + + L+P V+ + S + SV+A G
Sbjct: 206 GTVVCSLDGLFPVSEAQVHLALGDQRLNP----TVTYGNDSFSAKASVSVTAEDEGTQRL 261
Query: 267 TCVASNTAAQARYSSKLQVK 286
TC + +
Sbjct: 262 TCAVILGNQSQETLQTVTIY 281
Score = 65.7 bits (159), Expect = 3e-12
Identities = 39/306 (12%), Positives = 71/306 (23%), Gaps = 50/306 (16%)
Query: 2 PPILTYSFIEQTLQPGPAVSLKC-IASGNPTPD--IGWTLDGFELPTNNRFVIGQFVSGH 58
P + + + G ++L+C + G P + + EL
Sbjct: 86 PERVELAPLPSWQPVGKNLTLRCQVEGGAPRANLTVVLLRGEKELKREPAV--------G 137
Query: 59 GDVISHVNISHVTVEDGGEYACVAENRAGT--CEITPYDSGPYLIAWFKDGRQIPGRTSS 116
+ G ++C E E+ S PY + F P S
Sbjct: 138 EPAEVTTTVLVRRDHHGANFSCRTELDLRPQGLELFENTSAPYQLQTFVLPATPPQLVSP 197
Query: 117 TSLVINPVGREDRGIYQCIA-----------RRSDGDVAQGSAELQLGGLPYVRLIPKVT 165
L + +G C + GD + VT
Sbjct: 198 RVLE-----VDTQGTVVCSLDGLFPVSEAQVHLALGDQRLNPTVTYGNDSFSAKASVSVT 252
Query: 166 AIDGEGLSIKCPVAGYPIEEVHWE-----KVPPKIESFAFPFDGLPEGARTRVICGVTHG 220
A D + C + P + EG V C H
Sbjct: 253 AEDEGTQRLTC-AVILGNQSQETLQTVTIYSFPAPNVILTK-PEVSEGTEVTVKCEA-HP 309
Query: 221 DPPLTIRWLKDGKPLSPRFPVNVSDLDSFSSLLSINSVSAAHSGEYTCVASNTAAQARYS 280
+T+ + + L + + + ++C A+ A
Sbjct: 310 RAKVTLNGVPAQPLGPR-------------AQLLLKATPEDNGRSFSCSATLEVAGQLIH 356
Query: 281 SKLQVK 286
+
Sbjct: 357 KNQTRE 362
>3mj6_A Junctional adhesion molecule-like; immunoglobulin tandem domain,
cell adhesion, cell junction, glycoprotein,
immunoglobulin domain, membrane; HET: NAG FUC; 2.19A
{Mus musculus} PDB: 3mj7_A* 3mj9_A*
Length = 268
Score = 79.5 bits (195), Expect = 1e-17
Identities = 39/292 (13%), Positives = 79/292 (27%), Gaps = 69/292 (23%)
Query: 2 PPILTYSFIEQTLQPGPAVSLKCI---ASGNPTPDIGWTLDGFELPTNNRFVIGQFVSGH 58
P LT S + + G +V + C+ + W + + +
Sbjct: 5 LPGLTVSSPQLRVHVGESVLMGCVVQRTEEKHVDRVDWLFSKDKDDASEYVLFY------ 58
Query: 59 GDVISHVNISHVTVEDGGEYACVAENRAGTCEITPYDSGPYLIAWFKDGRQIPGRTSST- 117
Y + F++ + G T
Sbjct: 59 -----------------------------------YSNLSVPTGRFQNRSHLVGDTFHND 83
Query: 118 -SLVINPVGREDRGIYQCIARRSDGDVAQGSAELQLGGLPYVRLIPKVTAIDGEGLSIKC 176
SL++ V + D GIY C R + ++L LP + G+ ++C
Sbjct: 84 GSLLLQDVQKADEGIYTCEIR-LKNESMVMKKPVELWVLPEE--PRDLRVRVGDTTQMRC 140
Query: 177 PVAGYP---IEEVHWEKVPPKIESFAFPFDGLPEGARTRVICGVTHGDPPLTIRWLKDGK 233
+ + +V+W E ++ ++
Sbjct: 141 SIQSTEEKRVTKVNWMFSSG----------SHTEEETVLSYDSNMRSGKFQSLGRFRNRV 190
Query: 234 PLSPRFPVNVSDLDSFSSLLSINSVSAAHSGEYTCVASNTAAQARYSSKLQV 285
L+ D+ + + +V + G YTC ++R + L V
Sbjct: 191 DLT-------GDISRNDGSIKLQTVKESDQGIYTCSIYVGKLESRKTIVLHV 235
Score = 43.3 bits (101), Expect = 3e-05
Identities = 21/142 (14%), Positives = 38/142 (26%), Gaps = 35/142 (24%)
Query: 154 GLPYVRLIPK-VTAIDGEGLSIKCPV---AGYPIEEVHWEKVPPKIESFAFPFDGLPEGA 209
GLP + + + GE + + C V ++ V W K
Sbjct: 4 GLPGLTVSSPQLRVHVGESVLMGCVVQRTEEKHVDRVDWLFSKDK--------------- 48
Query: 210 RTRVICGVTHGDPPLTIRWLKDGKPLSPRFP-----VNVSDLDSFSSLLSINSVSAAHSG 264
+ + + + RF V + + S L + V A G
Sbjct: 49 ---------DDASEYVLFYYSNLSVPTGRFQNRSHLVGDTFHNDGS--LLLQDVQKADEG 97
Query: 265 EYTCVASNTAAQARYSSKLQVK 286
YTC +++
Sbjct: 98 IYTCEIRLKNESMVMKKPVELW 119
>2dm3_A KIAA0992 protein, palladin; beta-sandwich, myopalladin,
actin-associated scaffold, structural genomics, NPPSFA;
NMR {Homo sapiens}
Length = 110
Score = 75.5 bits (186), Expect = 2e-17
Identities = 29/89 (32%), Positives = 41/89 (46%), Gaps = 4/89 (4%)
Query: 2 PPILTYSFIEQTLQPGPAVSLKCIASGNPTPDIGWTLDGFELPTNNRFVIGQFVSGHGDV 61
P + + T+Q G + C SG PTPD+ W LDG + ++ + +G +
Sbjct: 9 RPHFLQAPGDLTVQEGKLCRMDCKVSGLPTPDLSWQLDGKPVRPDSAHKMLVRENGVHSL 68
Query: 62 ISHVNISHVTVEDGGEYACVAENRAGTCE 90
I I VT D G Y C+A NRAG
Sbjct: 69 I----IEPVTSRDAGIYTCIATNRAGQNS 93
Score = 69.3 bits (170), Expect = 3e-15
Identities = 27/81 (33%), Positives = 41/81 (50%), Gaps = 1/81 (1%)
Query: 206 PEGARTRVICGVTHGDPPLTIRWLKDGKPLSPRFPVNVSDLDSFSSLLSINSVSAAHSGE 265
EG R+ C V+ G P + W DGKP+ P + ++ L I V++ +G
Sbjct: 22 QEGKLCRMDCKVS-GLPTPDLSWQLDGKPVRPDSAHKMLVRENGVHSLIIEPVTSRDAGI 80
Query: 266 YTCVASNTAAQARYSSKLQVK 286
YTC+A+N A Q +S +L V
Sbjct: 81 YTCIATNRAGQNSFSLELVVA 101
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA,
receptor-ligand complex transferase; HET: NAG NDG MAN
BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Length = 347
Score = 79.8 bits (196), Expect = 2e-17
Identities = 31/198 (15%), Positives = 48/198 (24%), Gaps = 49/198 (24%)
Query: 1 TPPILTYSFIEQTLQPGPAVSLKCIASGNPTPDIGWTLDGFELPTNNRFVIGQFVSGHGD 60
P L ++ G V L+C G GW L E + +
Sbjct: 157 GVPTLKVQVPNASVDVGDDVLLRCQVEGRGLEQAGWILTELEQSAT----VMKSGGLPSL 212
Query: 61 VISHVNISHVTVEDGGEYACVAENRAG--------------------------TCEITPY 94
++ N+ + + C AEN G C
Sbjct: 213 GLTLANV--TSDLNRKNVTCWAENDVGRAEVSVQVNVSFPASVQLHTAVEMHHWCIPFSV 270
Query: 95 DSGPY-LIAWFKDGRQIPGRTSST---------------SLVINPVGREDRGIYQCIARR 138
D P + W +G + + L +N + G Y +A
Sbjct: 271 DGQPAPSLRWLFNGSVLNETSFIFTEFLEPAANETVRHGCLRLNQPTHVNNGNYTLLAAN 330
Query: 139 SDGDVAQGSAELQLGGLP 156
G A S P
Sbjct: 331 PFG-QASASIMAAFMDNP 347
Score = 68.6 bits (167), Expect = 2e-13
Identities = 33/199 (16%), Positives = 55/199 (27%), Gaps = 57/199 (28%)
Query: 101 IAWFKDGRQIPGRT-------SSTSLVINPVGREDRGIYQCIARRSDGDVAQGSAELQLG 153
W + S + N +R C A G A+ S ++ +
Sbjct: 190 AGWILTELEQSATVMKSGGLPSLGLTLANVTSDLNRKNVTCWAENDVGR-AEVSVQVNVS 248
Query: 154 GLPYVRLIPKVTAIDGEGLSIKCPVAGYPIEEVHWEKVPPKIESFAFPFDGLPEGARTRV 213
V+L TA++ I V
Sbjct: 249 FPASVQLH---TAVEMHHWCIPFSV----------------------------------- 270
Query: 214 ICGVTHGDPPLTIRWLKDGKPLSP------RFPVNVSDLDSFSSLLSINSVSAAHSGEYT 267
G P ++RWL +G L+ F ++ L +N + ++G YT
Sbjct: 271 -----DGQPAPSLRWLFNGSVLNETSFIFTEFLEPAANETVRHGCLRLNQPTHVNNGNYT 325
Query: 268 CVASNTAAQARYSSKLQVK 286
+A+N QA S
Sbjct: 326 LLAANPFGQASASIMAAFM 344
Score = 56.3 bits (135), Expect = 3e-09
Identities = 18/82 (21%), Positives = 26/82 (31%), Gaps = 3/82 (3%)
Query: 205 LPEGARTRVICGVTHGDPPLTIRWLKDGKPLSPRFPVNVSDLDSFSSLLSINSVSAAHSG 264
+ G + C V G W+ S + L S L N S +
Sbjct: 170 VDVGDDVLLRCQVE-GRGLEQAGWILTELEQSATV-MKSGGLPS-LGLTLANVTSDLNRK 226
Query: 265 EYTCVASNTAAQARYSSKLQVK 286
TC A N +A S ++ V
Sbjct: 227 NVTCWAENDVGRAEVSVQVNVS 248
>1nct_A Titin; cell adhesion, glycoprotein, transmembrane, repeat, brain,
immunoglobulin fold, alternative splicing, signal,
muscle protein; NMR {Homo sapiens} SCOP: b.1.1.4 PDB:
1ncu_A 1tnm_A 1tnn_A
Length = 106
Score = 74.7 bits (184), Expect = 3e-17
Identities = 22/89 (24%), Positives = 29/89 (32%), Gaps = 5/89 (5%)
Query: 2 PPILTYSFIEQTLQPGPAVSLKCIASGNPTPDIGWTLDGFELPTNNRFVIGQFVSGHGDV 61
+ T+ G + C G P P + W G L T+ R +
Sbjct: 14 AARILTKPRSMTVYEGESARFSCDTDGEPVPTVTWLRKGQVLSTSARHQVTTTKYKST-- 71
Query: 62 ISHVNISHVTVEDGGEYACVAENRAGTCE 90
IS V D G Y+ V EN G E
Sbjct: 72 ---FEISSVQASDEGNYSVVVENSEGKQE 97
Score = 70.1 bits (172), Expect = 1e-15
Identities = 23/81 (28%), Positives = 36/81 (44%), Gaps = 2/81 (2%)
Query: 206 PEGARTRVICGVTHGDPPLTIRWLKDGKPLSPRFPVNVSDLDSFSSLLSINSVSAAHSGE 265
EG R C G+P T+ WL+ G+ LS V+ S+ I+SV A+ G
Sbjct: 27 YEGESARFSCDTD-GEPVPTVTWLRKGQVLSTSARHQVTTTKYKSTFE-ISSVQASDEGN 84
Query: 266 YTCVASNTAAQARYSSKLQVK 286
Y+ V N+ + L ++
Sbjct: 85 YSVVVENSEGKQEAEFTLTIQ 105
Score = 46.6 bits (111), Expect = 4e-07
Identities = 11/59 (18%), Positives = 21/59 (35%), Gaps = 9/59 (15%)
Query: 101 IAWFKDGRQIP--GRTS------STSLVINPVGREDRGIYQCIARRSDGDVAQGSAELQ 151
+ W + G+ + R ++ I+ V D G Y + S+G + L
Sbjct: 46 VTWLRKGQVLSTSARHQVTTTKYKSTFEISSVQASDEGNYSVVVENSEG-KQEAEFTLT 103
>3puc_A Titin; I-SET IG-like domain, M-BAND, transferase; 0.96A {Homo
sapiens}
Length = 99
Score = 74.2 bits (183), Expect = 3e-17
Identities = 18/90 (20%), Positives = 32/90 (35%), Gaps = 5/90 (5%)
Query: 1 TPPILTYSFIEQTLQPGPAVSLKCIASGNPTPDIGWTLDGFELPTNNRFVIGQFVSGHGD 60
+ P++ + T+ A+G P P WT DG + ++ + +
Sbjct: 5 SKPVIVTGLQDTTVSSDSVAKFAVKATGEPRPTAIWTKDGKAITQGGKYKLSE-----DK 59
Query: 61 VISHVNISHVTVEDGGEYACVAENRAGTCE 90
+ I D G Y C +N AG+
Sbjct: 60 GGFFLEIHKTDTSDSGLYTCTVKNSAGSVS 89
Score = 69.2 bits (170), Expect = 2e-15
Identities = 24/83 (28%), Positives = 35/83 (42%), Gaps = 6/83 (7%)
Query: 206 PEGARTRVICGVTHGDPPLTIRWLKDGKPL--SPRFPVNVSDLDSFSSLLSINSVSAAHS 263
+ + T G+P T W KDGK + ++ + D F L I+ + S
Sbjct: 19 SSDSVAKFAVKAT-GEPRPTAIWTKDGKAITQGGKYKL-SEDKGGFF--LEIHKTDTSDS 74
Query: 264 GEYTCVASNTAAQARYSSKLQVK 286
G YTC N+A S KL +K
Sbjct: 75 GLYTCTVKNSAGSVSSSCKLTIK 97
>2ckn_A Basic fibroblast growth factor receptor 1; kinase, transferase,
heparin-binding, nucleotide-binding, immunoglobulin
domain, alternatice splicing; NMR {Mus musculus}
Length = 95
Score = 74.1 bits (182), Expect = 4e-17
Identities = 21/87 (24%), Positives = 31/87 (35%), Gaps = 10/87 (11%)
Query: 2 PPILTYSFIEQTLQPGPAVSLKCIASGNPTPDIGWTLDGFELPTNNRFVIGQFVSGHGDV 61
P + + PG + L+C I W DG +L +NR I
Sbjct: 9 PWGVPVEVESLLVHPGDLLQLRCRLRD-DVQSINWLRDGVQLVESNRTRITG-------- 59
Query: 62 ISHVNISHVTVEDGGEYACVAENRAGT 88
V + D G YACV + +G+
Sbjct: 60 -EEVEVRDSIPADSGLYACVTSSPSGS 85
Score = 63.7 bits (155), Expect = 2e-13
Identities = 17/81 (20%), Positives = 30/81 (37%), Gaps = 7/81 (8%)
Query: 205 LPEGARTRVICGVTHGDPPLTIRWLKDGKPLSPRFPVNVSDLDSFSSLLSINSVSAAHSG 264
+ G ++ C + D +I WL+DG L ++ + + A SG
Sbjct: 21 VHPGDLLQLRCRLR--DDVQSINWLRDGVQLVESNRTRITG-----EEVEVRDSIPADSG 73
Query: 265 EYTCVASNTAAQARYSSKLQV 285
Y CV S+ + + V
Sbjct: 74 LYACVTSSPSGSDTTYFSVNV 94
Score = 47.1 bits (112), Expect = 2e-07
Identities = 11/45 (24%), Positives = 18/45 (40%), Gaps = 4/45 (8%)
Query: 101 IAWFKDGRQIPG----RTSSTSLVINPVGREDRGIYQCIARRSDG 141
I W +DG Q+ R + + + D G+Y C+ G
Sbjct: 40 INWLRDGVQLVESNRTRITGEEVEVRDSIPADSGLYACVTSSPSG 84
>1vca_A VCAM-D1,2, human vascular cell adhesion molecule-1; immunoglobulin
superfamily, integrin-binding, cell adhesion protein;
1.80A {Homo sapiens} SCOP: b.1.1.3 b.1.1.4 PDB: 1ij9_A
1vsc_A
Length = 202
Score = 76.7 bits (188), Expect = 5e-17
Identities = 31/201 (15%), Positives = 52/201 (25%), Gaps = 54/201 (26%)
Query: 11 EQTLQPGPAVSLKCIASGNPTPDIGWTLDGFELPTNNRFVIGQFVSGHGDVISHVNISHV 70
Q G +VSL C +G +P W + P N + + S + ++ V
Sbjct: 10 RYLAQIGDSVSLTCSTTGCESPFFSW-RTQIDSPLNGKVT-------NEGTTSTLTMNPV 61
Query: 71 TVEDGGEYACVAENRAG---------------------------------TCEITPYDSG 97
+ + Y C A + C +
Sbjct: 62 SFGNEHSYLCTATCESRKLEKGIQVEIYSFPKDPEIHLSGPLEAGKPITVKCSVADVYPF 121
Query: 98 PYL-IAWFKDGRQIP------------GRTSSTSLVINPVGREDRGIYQCIARRSDGDVA 144
L I K + T S + PV + + C A+ ++
Sbjct: 122 DRLEIDLLKGDHLMKSQEFLEDADRKSLETKSLEVTFTPVIEDIGKVLVCRAKLHIDEMD 181
Query: 145 QGSAELQLGGLPYVRLIPKVT 165
Q V + PK T
Sbjct: 182 SVPTVRQAVKELQVYISPKNT 202
Score = 62.1 bits (150), Expect = 7e-12
Identities = 26/191 (13%), Positives = 52/191 (27%), Gaps = 47/191 (24%)
Query: 101 IAWFKD-----GRQIPGRTSSTSLVINPVGREDRGIYQCIARRSDGDVAQGSAELQLGGL 155
+W ++ ++++L +NPV + Y C A + ++++
Sbjct: 33 FSWRTQIDSPLNGKVTNEGTTSTLTMNPVSFGNEHSYLCTATCESR-KLEKGIQVEIYSF 91
Query: 156 PYVRLIPK-VTAIDGEGLSIKCPVAGYPIEEVHWEKVPPKIESFAFPFDGLPEGARTRVI 214
P I G+ +++KC VA V P
Sbjct: 92 PKDPEIHLSGPLEAGKPITVKCSVAD----------VYPF-------------------- 121
Query: 215 CGVTHGDPPLTIRWLKDGKPLSPRF---PVNVSDLDSFSSLLSINSVSAAHSGEYTCVAS 271
L I LK + + + L++ S ++ V C A
Sbjct: 122 -------DRLEIDLLKGDHLMKSQEFLEDADRKSLETKSLEVTFTPVIEDIGKVLVCRAK 174
Query: 272 NTAAQARYSSK 282
+
Sbjct: 175 LHIDEMDSVPT 185
Score = 47.1 bits (111), Expect = 1e-06
Identities = 15/81 (18%), Positives = 29/81 (35%), Gaps = 7/81 (8%)
Query: 206 PEGARTRVICGVTHGDPPLTIRWLKD-GKPLSPRFPVNVSDLDSFSSLLSINSVSAAHSG 264
G + C T G W PL+ + + S L++N VS +
Sbjct: 14 QIGDSVSLTCSTT-GCESPFFSWRTQIDSPLNGKVTNEGTT-----STLTMNPVSFGNEH 67
Query: 265 EYTCVASNTAAQARYSSKLQV 285
Y C A+ + + ++++
Sbjct: 68 SYLCTATCESRKLEKGIQVEI 88
Score = 45.5 bits (107), Expect = 4e-06
Identities = 13/96 (13%), Positives = 27/96 (28%), Gaps = 4/96 (4%)
Query: 1 TPPILTYSFIEQTLQPGPAVSLKCIASGN---PTPDIGWTLDGFELPTNNRFVIGQFVSG 57
+ P + L+ G +++KC + +I + + S
Sbjct: 90 SFPKDPEIHLSGPLEAGKPITVKCSVADVYPFDRLEIDLLKGDHLMKSQEFLEDADRKSL 149
Query: 58 HGDVISHVNISHVTVEDGGEYACVAENRAGTCEITP 93
V + V + G C A+ + P
Sbjct: 150 E-TKSLEVTFTPVIEDIGKVLVCRAKLHIDEMDSVP 184
>2kdg_A Myotilin; immonoglobulin domain, actin-binding, structural
protein, cell membrane, cytoplasm, cytoskeleton,
disease mutation, immunoglobulin domain; NMR {Homo
sapiens}
Length = 100
Score = 73.1 bits (180), Expect = 8e-17
Identities = 25/89 (28%), Positives = 37/89 (41%), Gaps = 4/89 (4%)
Query: 2 PPILTYSFIEQTLQPGPAVSLKCIASGNPTPDIGWTLDGFELPTNNRFVIGQFVSGHGDV 61
PP ++ G + SG P PD+ W L+G + +++ + G +
Sbjct: 5 PPRFIQVPENMSIDEGRFCRMDFKVSGLPAPDVSWYLNGRTVQSDDLHKMIVSEKGLHSL 64
Query: 62 ISHVNISHVTVEDGGEYACVAENRAGTCE 90
I V D G YACVA+NRAG
Sbjct: 65 I----FEVVRASDAGAYACVAKNRAGEAT 89
Score = 71.6 bits (176), Expect = 3e-16
Identities = 24/83 (28%), Positives = 38/83 (45%), Gaps = 5/83 (6%)
Query: 206 PEGARTRVICGVTHGDPPLTIRWLKDGKPL--SPRFPVNVSDLDSFSSLLSINSVSAAHS 263
EG R+ V+ G P + W +G+ + + VS+ S L V A+ +
Sbjct: 18 DEGRFCRMDFKVS-GLPAPDVSWYLNGRTVQSDDLHKMIVSEKGLHS--LIFEVVRASDA 74
Query: 264 GEYTCVASNTAAQARYSSKLQVK 286
G Y CVA N A +A ++ +L V
Sbjct: 75 GAYACVAKNRAGEATFTVQLDVL 97
>3sgj_C Human FCG3A receptor; receptor complex, FC receptor, antibody,
immune system; HET: NAG BMA MAN FUC; 2.20A {Homo
sapiens} PDB: 3sgk_C*
Length = 204
Score = 75.7 bits (186), Expect = 1e-16
Identities = 25/203 (12%), Positives = 53/203 (26%), Gaps = 61/203 (30%)
Query: 88 TCEITPYDSGPYLIAWFKDGRQIPGRTSSTSLVINPVGREDRGIYQCIAR---RSDGDVA 144
C+ WF + I + SS I+ +D G Y+C + SD
Sbjct: 28 KCQGAY-SPEDQSTQWFHNESLISSQASS--YFIDAATVDDSGEYRCQTQLSTLSD---- 80
Query: 145 QGSAELQLGGLPYVRLIPKVTAIDGEGLSIKCPVAGYPIEEVHWEKVPPKIESFAFPFDG 204
+L++ + P+ + + + ++C
Sbjct: 81 --PVQLEVHIGWLLLQAPRWVFKEEDPIHLRCHSWKNT---------------------- 116
Query: 205 LPEGARTRVICGVTHGDPPLTIRWLKDGKPLSPRFPVNVSDLDSFSSLLSINSVSAAHSG 264
+ +L++GK +S I + SG
Sbjct: 117 -----------------ALHKVTYLQNGKGRKYF---------HHNSDFYIPKATLKDSG 150
Query: 265 EYTCVASNTAAQARYSS-KLQVK 286
Y C + + ++ +
Sbjct: 151 SYFCRGLVGSKNVSSETVQITIT 173
Score = 68.8 bits (168), Expect = 3e-14
Identities = 24/193 (12%), Positives = 54/193 (27%), Gaps = 47/193 (24%)
Query: 3 PILTYSFIEQTLQPGPAVSLKCIASGNPTP-DIGWTLDGFELPTNNRFVIGQFVSGHGDV 61
++ + +V+LKC + +P W + + +
Sbjct: 8 AVVFLEPQWYRVLEKDSVTLKCQGAYSPEDQSTQWFHNESLISSQAS------------- 54
Query: 62 ISHVNISHVTVEDGGEYACVAENRAG------------------------------TCEI 91
I TV+D GEY C + C
Sbjct: 55 --SYFIDAATVDDSGEYRCQTQLSTLSDPVQLEVHIGWLLLQAPRWVFKEEDPIHLRCH- 111
Query: 92 TPYDSGPYLIAWFKDGRQIPGRTSSTSLVINPVGREDRGIYQCIARRSDGDVAQGSAELQ 151
+ ++ + + + ++G+ ++ I +D G Y C +V+ + ++
Sbjct: 112 SWKNTALHKVTYLQNGKGRKYFHHNSDFYIPKATLKDSGSYFCRGLVGSKNVSSETVQIT 171
Query: 152 LGGLPYVRLIPKV 164
+ V I
Sbjct: 172 ITQGLAVSTISSF 184
Score = 45.3 bits (107), Expect = 6e-06
Identities = 12/67 (17%), Positives = 23/67 (34%), Gaps = 11/67 (16%)
Query: 207 EGARTRVICGVTHGDPPLTIRWLKDGKPLSPRFPVNVSDLDSFSSLLSINSVSAAHSGEY 266
E + C + + +W + +S S +S I++ + SGEY
Sbjct: 21 EKDSVTLKCQGAYSPEDQSTQWFHNESLIS-----------SQASSYFIDAATVDDSGEY 69
Query: 267 TCVASNT 273
C +
Sbjct: 70 RCQTQLS 76
>2ny1_B T-cell surface glycoprotein CD4; HIV, GP120, CD4, viral
protein-immune system compl; HET: NAG SUC; 1.99A {Homo
sapiens} SCOP: b.1.1.1 b.1.1.3 PDB: 2nxz_B* 2ny0_B*
2nxy_B* 2ny2_B* 2ny3_B* 2ny4_B* 2ny5_C* 2ny6_B* 3jwd_C*
3jwo_C* 1g9m_C* 1g9n_C* 1gc1_C* 1rzj_C* 1rzk_C* 3o2d_A
3cd4_A 3lqa_C* 2b4c_C* 2qad_B* ...
Length = 184
Score = 75.0 bits (184), Expect = 1e-16
Identities = 29/271 (10%), Positives = 57/271 (21%), Gaps = 101/271 (37%)
Query: 15 QPGPAVSLKCIASGNPTPDIGWTLDGFELPTNNRFVIGQFVSGHGDVISHVNISHVTVED 74
+ G V L C AS + W N+ G F++ ++ S ++ D
Sbjct: 8 KKGDTVELTCTASQKKSIQFHWKNSNQIKILGNQ---GSFLTKGPSKLNDRADSRRSLWD 64
Query: 75 GGEYACVAENRAGTCEITPYDSGPYLIAWFKDGRQIPGRTSSTSLVINPVGREDRGIYQC 134
G + L+I + ED Y C
Sbjct: 65 QGNF---------------------------------------PLIIKNLKIEDSDTYIC 85
Query: 135 IARRSDGDVAQGSAELQLGGLPYVRLIPKVTAIDGEGLSIKCPVAGYPIEEVHWEKVPPK 194
+V + + G+ L++
Sbjct: 86 EVEDQKEEVQLLVFG--------LTANSDTHLLQGQSLTLTLES---------------- 121
Query: 195 IESFAFPFDGLPEGARTRVICGVTHGDPPLTIRWLKDGKPLSPRFPVNVSDLDSFSSLLS 254
+++ LS
Sbjct: 122 ------------------------PPGSSPSVQCRSPRGKNIQG-----------GKTLS 146
Query: 255 INSVSAAHSGEYTCVASNTAAQARYSSKLQV 285
++ + SG +TC + + + V
Sbjct: 147 VSQLELQDSGTWTCTVLQNQKKVEFKIDIVV 177
Score = 58.5 bits (141), Expect = 1e-10
Identities = 9/82 (10%), Positives = 25/82 (30%), Gaps = 15/82 (18%)
Query: 11 EQTLQPGPAVSLKCIASGNPTPDIGWTLDGFELPTNNRFVIGQFVSGHGDVISHVNISHV 70
+ L G +++L + +P + + + +++S +
Sbjct: 106 DTHLLQGQSLTLTLESPPGSSPSVQCRSPRGKNIQGGK---------------TLSVSQL 150
Query: 71 TVEDGGEYACVAENRAGTCEIT 92
++D G + C E
Sbjct: 151 ELQDSGTWTCTVLQNQKKVEFK 172
Score = 41.5 bits (97), Expect = 7e-05
Identities = 15/115 (13%), Positives = 28/115 (24%), Gaps = 24/115 (20%)
Query: 164 VTAIDGEGLSIKCPVAGYPIEEVHWEKVPPKIESFAFPFDGLPEGARTRVICGVTHGDPP 223
V G+ + + C + + HW+
Sbjct: 5 VLGKKGDTVELTCTASQKKSIQFHWKNS------------------------NQIKILGN 40
Query: 224 LTIRWLKDGKPLSPRFPVNVSDLDSFSSLLSINSVSAAHSGEYTCVASNTAAQAR 278
K L+ R S D + L I ++ S Y C + + +
Sbjct: 41 QGSFLTKGPSKLNDRADSRRSLWDQGNFPLIIKNLKIEDSDTYICEVEDQKEEVQ 95
>3irg_B Obscurin-like protein 1; IG-like, titin, OBSL1, complex,
alternative splicing, ATP-binding, calcium,
calmodulin-binding, cardiomyopathy; 1.30A {Homo
sapiens} PDB: 3knb_B 2wp3_O* 2wwm_C 2wwk_O
Length = 107
Score = 72.4 bits (178), Expect = 2e-16
Identities = 22/90 (24%), Positives = 31/90 (34%), Gaps = 5/90 (5%)
Query: 1 TPPILTYSFIEQTLQPGPAVSLKCIASGNPTPDIGWTLDGFELPTNNRFVIGQFVSGHGD 60
+PP + G LKC+ G P P + W G +L + R G
Sbjct: 12 SPPCFLRFPRPVRVVSGAEAELKCVVLGEPPPVVVWEKGGQQLAASERLSF----PADGA 67
Query: 61 VISHVNISHVTVEDGGEYACVAENRAGTCE 90
+ ++ D G Y C A N AG
Sbjct: 68 EHG-LLLTAALPTDAGVYVCRARNAAGEAY 96
Score = 66.3 bits (162), Expect = 4e-14
Identities = 23/83 (27%), Positives = 34/83 (40%), Gaps = 6/83 (7%)
Query: 206 PEGARTRVICGVTHGDPPLTIRWLKDGKPL--SPRFPVNVSDLDSFSSLLSINSVSAAHS 263
GA + C V G+PP + W K G+ L S R D L + + +
Sbjct: 26 VSGAEAELKCVVL-GEPPPVVVWEKGGQQLAASERLSFPA---DGAEHGLLLTAALPTDA 81
Query: 264 GEYTCVASNTAAQARYSSKLQVK 286
G Y C A N A +A ++ + V
Sbjct: 82 GVYVCRARNAAGEAYAAAAVTVL 104
>2bk8_A Connectin, M1, titin heart isoform N2-B; IG domain, M-BAND,
structural protein, muscle, antibo; 1.69A {Homo sapiens}
Length = 97
Score = 72.0 bits (177), Expect = 2e-16
Identities = 16/83 (19%), Positives = 33/83 (39%), Gaps = 5/83 (6%)
Query: 206 PEGARTRVICGVTHGDPPLTIRWLKDGKPL--SPRFPVNVSDLDSFSSLLSINSVSAAHS 263
EG + +C + + D + W + L S ++ ++ D + L + ++
Sbjct: 14 EEGGHVKYVCKIENYDQSTQVTWYFGVRQLENSEKY--EITYEDGVAILY-VKDITKLDD 70
Query: 264 GEYTCVASNTAAQARYSSKLQVK 286
G Y C N + ++L VK
Sbjct: 71 GTYRCKVVNDYGEDSSYAELFVK 93
Score = 60.4 bits (147), Expect = 4e-12
Identities = 14/80 (17%), Positives = 24/80 (30%), Gaps = 6/80 (7%)
Query: 12 QTLQPGPAVSLKCIASGNPTP-DIGWTLDGFELPTNNRFVIGQFVSGHGDVISHVNISHV 70
+ G V C + W +L + ++ I + V + + +
Sbjct: 11 AVGEEGGHVKYVCKIENYDQSTQVTWYFGVRQLENSEKYEI----TYEDGVAI-LYVKDI 65
Query: 71 TVEDGGEYACVAENRAGTCE 90
T D G Y C N G
Sbjct: 66 TKLDDGTYRCKVVNDYGEDS 85
Score = 48.1 bits (115), Expect = 9e-08
Identities = 20/92 (21%), Positives = 31/92 (33%), Gaps = 17/92 (18%)
Query: 67 ISHVTVEDGGEYACVAENRAGTCEITPYDSGPYLIAWFKDGRQIPG--------RTSSTS 118
I H E+G + C+I YD + W+ RQ+
Sbjct: 8 IMHAVGEEG-------GHVKYVCKIENYDQ-STQVTWYFGVRQLENSEKYEITYEDGVAI 59
Query: 119 LVINPVGREDRGIYQCIARRSDGDVAQGSAEL 150
L + + + D G Y+C G+ AEL
Sbjct: 60 LYVKDITKLDDGTYRCKVVNDYGE-DSSYAEL 90
>3qp3_A Titin; I-SET IG-like, sarcomere, M-BAND, transferase; 2.00A {Homo
sapiens}
Length = 103
Score = 71.9 bits (177), Expect = 2e-16
Identities = 17/89 (19%), Positives = 29/89 (32%), Gaps = 5/89 (5%)
Query: 2 PPILTYSFIEQTLQPGPAVSLKCIASGNPTPDIGWTLDGFELPTNNRFVIGQFVSGHGDV 61
P +T + G PT ++ W +G EL +++ V
Sbjct: 8 APRITLRMRSHRVPCGQNTRFILNVQSKPTAEVKWYHNGVELQESSKIHYTN----TSGV 63
Query: 62 ISHVNISHVTVEDGGEYACVAENRAGTCE 90
++ + I +D G Y V N G
Sbjct: 64 LT-LEILDCHTDDSGTYRAVCTNYKGEAS 91
Score = 66.6 bits (163), Expect = 3e-14
Identities = 21/83 (25%), Positives = 32/83 (38%), Gaps = 6/83 (7%)
Query: 206 PEGARTRVICGVTHGDPPLTIRWLKDGKPL--SPRFPVNVSDLDSFSSLLSINSVSAAHS 263
P G TR I V P ++W +G L S + + ++ +L I S
Sbjct: 21 PCGQNTRFILNVQ-SKPTAEVKWYHNGVELQESSKI--HYTNTSGVLTLE-ILDCHTDDS 76
Query: 264 GEYTCVASNTAAQARYSSKLQVK 286
G Y V +N +A + L V
Sbjct: 77 GTYRAVCTNYKGEASDYATLDVT 99
>1wwc_A Protein (NT-3 growth factor receptor TRKC); TRK receptor, receptor
tyrosine kinase, 3D-domain swapping, transferase; 1.90A
{Homo sapiens} SCOP: b.1.1.4
Length = 118
Score = 72.2 bits (177), Expect = 3e-16
Identities = 26/99 (26%), Positives = 39/99 (39%), Gaps = 8/99 (8%)
Query: 190 KVPPKIESFAFPFDGLPEGARTRVICGVTHGDPPLTIRWLKDGKPL--SPRFPVNV-SDL 246
PP++ S PE I V G+PP T+ WL +G+PL S V +
Sbjct: 6 YYPPRVVSLE-----EPELRLEHCIEFVVRGNPPPTLHWLHNGQPLRESKIIHVEYYQEG 60
Query: 247 DSFSSLLSINSVSAAHSGEYTCVASNTAAQARYSSKLQV 285
+ L N + ++G YT +A N A +
Sbjct: 61 EISEGCLLFNKPTHYNNGNYTLIAKNPLGTANQTINGHF 99
Score = 64.8 bits (158), Expect = 2e-13
Identities = 16/73 (21%), Positives = 29/73 (39%), Gaps = 1/73 (1%)
Query: 20 VSLKCIASGNPTPDIGWTLDGFELPTNNRFVIGQFVSGHGDVISHVNISHVTVEDGGEYA 79
++ + GNP P + W +G L + + + G + + T + G Y
Sbjct: 23 HCIEFVVRGNPPPTLHWLHNGQPLRESKIIHVEYYQEGEISEGC-LLFNKPTHYNNGNYT 81
Query: 80 CVAENRAGTCEIT 92
+A+N GT T
Sbjct: 82 LIAKNPLGTANQT 94
Score = 42.9 bits (101), Expect = 1e-05
Identities = 13/69 (18%), Positives = 22/69 (31%), Gaps = 13/69 (18%)
Query: 101 IAWFKDGRQIP------------GRTSSTSLVINPVGREDRGIYQCIARRSDGDVAQGSA 148
+ W +G+ + G S L+ N + G Y IA+ G A +
Sbjct: 37 LHWLHNGQPLRESKIIHVEYYQEGEISEGCLLFNKPTHYNNGNYTLIAKNPLG-TANQTI 95
Query: 149 ELQLGGLPY 157
P+
Sbjct: 96 NGHFLKEPF 104
>1u2h_A APEG-1, aortic preferentially expressed protein 1; structural
genomics, IG-fold I-SET, RGD motif, homophilic
adhesion, arterial smooth muscle cells; 0.96A {Homo
sapiens}
Length = 99
Score = 70.8 bits (174), Expect = 6e-16
Identities = 20/90 (22%), Positives = 33/90 (36%), Gaps = 4/90 (4%)
Query: 1 TPPILTYSFIEQTLQPGPAVSLKCIASGNPTPDIGWTLDGFELPTNNRFVIGQFVSGHGD 60
PP S ++Q+++ G V + G P P + W + + + R G
Sbjct: 4 APPTFKVSLMDQSVREGQDVIMSIRVQGEPKPVVSWLRNRQPVRPDQRRFA---EEAEGG 60
Query: 61 VISHVNISHVTVEDGGEYACVAENRAGTCE 90
+ + I D G Y C A N G +
Sbjct: 61 LCR-LRILAAERGDAGFYTCKAVNEYGARQ 89
Score = 68.5 bits (168), Expect = 4e-15
Identities = 19/81 (23%), Positives = 35/81 (43%), Gaps = 1/81 (1%)
Query: 206 PEGARTRVICGVTHGDPPLTIRWLKDGKPLSPRFPVNVSDLDSFSSLLSINSVSAAHSGE 265
EG + V G+P + WL++ +P+ P + + L I + +G
Sbjct: 18 REGQDVIMSIRVQ-GEPKPVVSWLRNRQPVRPDQRRFAEEAEGGLCRLRILAAERGDAGF 76
Query: 266 YTCVASNTAAQARYSSKLQVK 286
YTC A N + ++L+V+
Sbjct: 77 YTCKAVNEYGARQCEARLEVR 97
>3r4d_A CEA-related cell adhesion molecule 1, isoform 1/2; immunoglobulin,
beta-sandwich, mceacam1A - immunoglobulin FO spike NTD -
galectin-like beta-sandwich fold; HET: NAG; 3.10A {Mus
musculus} PDB: 1l6z_A*
Length = 208
Score = 73.5 bits (180), Expect = 7e-16
Identities = 38/241 (15%), Positives = 61/241 (25%), Gaps = 69/241 (28%)
Query: 70 VTVEDGGEYACVAENRAGTCEITPYDSGPYLIAWFKDGRQIP------------------ 111
VT+E N P AW+K
Sbjct: 2 VTIEAVPPQVAEDNNVLLLVHNLPLA--LGAFAWYKGNTTAIDKEIARFVPNSNMNFTGQ 59
Query: 112 ---GR---TSSTSLVINPVGREDRGIYQCIARRSDGDVAQGSAELQLGGLPYVRLIPKVT 165
GR S+ SL+ + +D G+Y + Q + + +
Sbjct: 60 AYSGREIIYSNGSLLFQMITMKDMGVYTLDMTDENYRRTQATVRFHVHQPVTQPFLQVTN 119
Query: 166 AIDGEGLSIKCPVAGYPIEEVHWEKVPPKIESFAFPFDGLPEGARTRVICGVTHGDPPLT 225
E V D
Sbjct: 120 TTVKEL---------------------------------------DSVTLTCLSNDIGAN 140
Query: 226 IRWLKDGKPLSPRFPVNVSDLDSFSSLLSINSVSAAHSGEYTCVASNTAAQAR-YSSKLQ 284
I+WL + + L + +S +S+L I+ + +GEY C SN + R S KL
Sbjct: 141 IQWLFNSQSLQLTERMTLS---QNNSILRIDPIKREDAGEYQCEISNPVSVRRSNSIKLD 197
Query: 285 V 285
+
Sbjct: 198 I 198
Score = 61.2 bits (148), Expect = 2e-11
Identities = 27/171 (15%), Positives = 41/171 (23%), Gaps = 51/171 (29%)
Query: 17 GPAVSLKCIASGNPTPDIGWTLDGFELPTNN--RFVIGQFVSGHGDVISHV--------- 65
V L W RFV ++ G S
Sbjct: 14 DNNVLLLVHNLPLALGAFAWYKGNTTAIDKEIARFVPNSNMNFTGQAYSGREIIYSNGSL 73
Query: 66 NISHVTVEDGGEYACVAENRAG---------------------------------TCEIT 92
+T++D G Y + T
Sbjct: 74 LFQMITMKDMGVYTLDMTDENYRRTQATVRFHVHQPVTQPFLQVTNTTVKELDSVTLTCL 133
Query: 93 PYDSGPYLIAWFKDGRQIPG------RTSSTSLVINPVGREDRGIYQCIAR 137
D G I W + + + +++ L I+P+ RED G YQC
Sbjct: 134 SNDIGAN-IQWLFNSQSLQLTERMTLSQNNSILRIDPIKREDAGEYQCEIS 183
Score = 50.4 bits (120), Expect = 1e-07
Identities = 18/88 (20%), Positives = 31/88 (35%), Gaps = 8/88 (9%)
Query: 1 TPPILTYSFIEQTLQPGPAVSLKCIASGNPTPDIGWTLDGFELPTNNRFVIGQFVSGHGD 60
T++ +V+L C++ + +I W + L R + S +
Sbjct: 109 PVTQPFLQVTNTTVKELDSVTLTCLS-NDIGANIQWLFNSQSLQLTERMTL----SQNN- 162
Query: 61 VISHVNISHVTVEDGGEYACVAENRAGT 88
S + I + ED GEY C N
Sbjct: 163 --SILRIDPIKREDAGEYQCEISNPVSV 188
>3bfo_A Mucosa-associated lymphoid tissue lymphoma translocation protein
1 (isoform 2); hydrolase, immunoglobulin domain,
nucleus, protease; 1.15A {Homo sapiens}
Length = 91
Score = 70.1 bits (172), Expect = 1e-15
Identities = 18/88 (20%), Positives = 30/88 (34%), Gaps = 14/88 (15%)
Query: 1 TPPILTYSFIEQTLQPGPAVSLKCIASGNPTPDIGWTLDGFELPTNNRFVIGQFVSGHGD 60
+ + Q L PG + L+C+A G+P P W + L +
Sbjct: 2 SKLQICVEPTSQKLMPGSTLVLQCVAVGSPIPHYQWFKNELPLTHETK------------ 49
Query: 61 VISHVNISHVTVEDGGEYACVAENRAGT 88
+ +V +E G Y C N +
Sbjct: 50 --KLYMVPYVDLEHQGTYWCHVYNDRDS 75
Score = 60.0 bits (146), Expect = 4e-12
Identities = 16/70 (22%), Positives = 22/70 (31%), Gaps = 11/70 (15%)
Query: 205 LPEGARTRVICGVTHGDPPLTIRWLKDGKPLSPRFPVNVSDLDSFSSLLSINSVSAAHSG 264
L G+ + C G P +W K+ PL+ L + V H G
Sbjct: 15 LMPGSTLVLQCVAV-GSPIPHYQWFKNELPLT----------HETKKLYMVPYVDLEHQG 63
Query: 265 EYTCVASNTA 274
Y C N
Sbjct: 64 TYWCHVYNDR 73
Score = 48.5 bits (116), Expect = 6e-08
Identities = 11/56 (19%), Positives = 18/56 (32%), Gaps = 1/56 (1%)
Query: 101 IAWFKDGRQIPGRTSSTSLVINPVGREDRGIYQCIARRSDGDVAQGSAELQLGGLP 156
WFK+ + T ++ V E +G Y C E+ + L
Sbjct: 35 YQWFKNELPLTHETKKL-YMVPYVDLEHQGTYWCHVYNDRDSQDSKKVEIIIDELN 89
>2e7c_A Myosin-binding protein C, fast-type; IG-like domain, fast MYBP-C,
C-protein, skeletal muscle fast-isoform, structural
genomics, NPPSFA; NMR {Homo sapiens}
Length = 118
Score = 70.5 bits (173), Expect = 1e-15
Identities = 22/99 (22%), Positives = 36/99 (36%), Gaps = 7/99 (7%)
Query: 190 KVPPKIESFAFPFDGL--PEGARTRVICGVTHGDPPLTIRWLKDGKPLSP-RFPVNVSDL 246
PPKI G + ++ G P + W K G PL R V SD
Sbjct: 19 AEPPKIRLPRHLRQTYIRKVGEQLNLVVPFQ-GKPRPQVVWTKGGAPLDTSRVHVRTSD- 76
Query: 247 DSFSSLLSINSVSAAHSGEYTCVASNTAAQARYSSKLQV 285
F ++ + + + SGEY + + +++V
Sbjct: 77 --FDTVFFVRQAARSDSGEYELSVQIENMKDTATIRIRV 113
Score = 62.0 bits (151), Expect = 2e-12
Identities = 21/93 (22%), Positives = 30/93 (32%), Gaps = 8/93 (8%)
Query: 2 PPILTYSFIEQTL--QPGPAVSLKCIASGNPTPDIGWTLDGFELPTNNRFVIGQFVSGHG 59
P I + QT + G ++L G P P + WT G L T+ V
Sbjct: 22 PKIRLPRHLRQTYIRKVGEQLNLVVPFQGKPRPQVVWTKGGAPLDTSRVHVR------TS 75
Query: 60 DVISHVNISHVTVEDGGEYACVAENRAGTCEIT 92
D + + D GEY + T
Sbjct: 76 DFDTVFFVRQAARSDSGEYELSVQIENMKDTAT 108
Score = 40.5 bits (95), Expect = 7e-05
Identities = 11/44 (25%), Positives = 16/44 (36%), Gaps = 7/44 (15%)
Query: 101 IAWFKDGRQIPG-----RTS--STSLVINPVGREDRGIYQCIAR 137
+ W K G + RTS T + R D G Y+ +
Sbjct: 56 VVWTKGGAPLDTSRVHVRTSDFDTVFFVRQAARSDSGEYELSVQ 99
>1fhg_A Telokin; immunoglobulin fold, beta barrel, contractIle protein;
2.00A {Meleagris gallopavo} SCOP: b.1.1.4 PDB: 1tlk_A
Length = 154
Score = 71.4 bits (175), Expect = 1e-15
Identities = 21/90 (23%), Positives = 33/90 (36%), Gaps = 4/90 (4%)
Query: 1 TPPILTYSFIEQTLQPGPAVSLKCIASGNPTPDIGWTLDGFELPTNNRFVIGQFVSGHGD 60
P T + ++ + G A C G P P++ W D + + F I +
Sbjct: 40 VKPYFTKTILDMEVVEGSAARFDCKVEGYPDPEVMWFKDDNPVKESRHFQIDY----DEE 95
Query: 61 VISHVNISHVTVEDGGEYACVAENRAGTCE 90
+ IS V +D +Y C A N G
Sbjct: 96 GNCSLTISEVCGDDDAKYTCKAVNSLGEAT 125
Score = 67.6 bits (165), Expect = 4e-14
Identities = 25/83 (30%), Positives = 41/83 (49%), Gaps = 5/83 (6%)
Query: 206 PEGARTRVICGVTHGDPPLTIRWLKDGKPL--SPRFPVNVSDLDSFSSLLSINSVSAAHS 263
EG+ R C V G P + W KD P+ S F ++ + + S L+I+ V
Sbjct: 54 VEGSAARFDCKVE-GYPDPEVMWFKDDNPVKESRHFQIDYDEEGNCS--LTISEVCGDDD 110
Query: 264 GEYTCVASNTAAQARYSSKLQVK 286
+YTC A N+ +A +++L V+
Sbjct: 111 AKYTCKAVNSLGEATCTAELLVE 133
>2eo9_A Roundabout homolog 1; beta-sandwich, IG-fold, H-ROBO-1, deleted
in U twenty twenty, neurogenesis, structural genomics,
NPPSFA; NMR {Homo sapiens}
Length = 118
Score = 70.2 bits (172), Expect = 1e-15
Identities = 23/91 (25%), Positives = 40/91 (43%), Gaps = 7/91 (7%)
Query: 2 PPILTYSFIEQTLQPGPAVSLKCIASGNPTPDIGWTLDGFELPTNNRFVIGQFVSGHGDV 61
PP++ + QT+ L C+A+G+P P I W DG + T + + +G +
Sbjct: 8 PPVIRQGPVNQTVAVDGTFVLSCVATGSPVPTILWRKDGVLVSTQDSRIK---QLENGVL 64
Query: 62 ISHVNISHVTVEDGGEYACVAENRAGTCEIT 92
I + + D G Y C+A +G +
Sbjct: 65 Q----IRYAKLGDTGRYTCIASTPSGEATWS 91
Score = 63.6 bits (155), Expect = 4e-13
Identities = 22/83 (26%), Positives = 39/83 (46%), Gaps = 6/83 (7%)
Query: 205 LPEGARTRVICGVTHGDPPLTIRWLKDGKPLSPRFP-VNVSDLDSFSSLLSINSVSAAHS 263
+ + C T G P TI W KDG +S + + + + +L I +
Sbjct: 20 VAVDGTFVLSCVAT-GSPVPTILWRKDGVLVSTQDSRIKQLE----NGVLQIRYAKLGDT 74
Query: 264 GEYTCVASNTAAQARYSSKLQVK 286
G YTC+AS + +A +S+ ++V+
Sbjct: 75 GRYTCIASTPSGEATWSAYIEVQ 97
Score = 48.6 bits (116), Expect = 1e-07
Identities = 20/71 (28%), Positives = 27/71 (38%), Gaps = 7/71 (9%)
Query: 101 IAWFKDGRQIPGRTS------STSLVINPVGREDRGIYQCIARRSDGDVAQGSAELQLGG 154
I W KDG + + S + L I D G Y CIA G A SA +++
Sbjct: 40 ILWRKDGVLVSTQDSRIKQLENGVLQIRYAKLGDTGRYTCIASTPSG-EATWSAYIEVQE 98
Query: 155 LPYVRLIPKVT 165
P+ T
Sbjct: 99 FGVPVQPPRPT 109
>1g1c_A Immunoglobulin-like domain I1 from titin; immunoglobulin domain,
beta-sandwhich, I-SET, structural protein; 2.10A {Homo
sapiens} SCOP: b.1.1.4
Length = 99
Score = 69.2 bits (170), Expect = 2e-15
Identities = 20/89 (22%), Positives = 32/89 (35%), Gaps = 4/89 (4%)
Query: 2 PPILTYSFIEQTLQPGPAVSLKCIASGNPTPDIGWTLDGFELPTNNRFVIGQFVSGHGDV 61
P + QT+ G + G P P+ W +G ++ ++R + +V
Sbjct: 5 APKIFERIQSQTVGQGSDAHFRVRVVGKPDPECEWYKNGVKIERSDRI---YWYWPEDNV 61
Query: 62 ISHVNISHVTVEDGGEYACVAENRAGTCE 90
+ I VT ED A N AG
Sbjct: 62 CE-LVIRDVTGEDSASIMVKAINIAGETS 89
Score = 67.3 bits (165), Expect = 1e-14
Identities = 18/83 (21%), Positives = 28/83 (33%), Gaps = 5/83 (6%)
Query: 206 PEGARTRVICGVTHGDPPLTIRWLKDGKPL--SPRFPVNVSDLDSFSSLLSINSVSAAHS 263
+G+ V G P W K+G + S R + + L I V+ S
Sbjct: 18 GQGSDAHFRVRVV-GKPDPECEWYKNGVKIERSDRIYWYWPEDNVCE--LVIRDVTGEDS 74
Query: 264 GEYTCVASNTAAQARYSSKLQVK 286
A N A + + L V+
Sbjct: 75 ASIMVKAINIAGETSSHAFLLVQ 97
>2v9t_A Roundabout homolog 1; structural protein-receptor complex,
developmental protein, domain, roundabout, chemotaxis,
LRR domain; 1.70A {Homo sapiens}
Length = 117
Score = 69.8 bits (171), Expect = 2e-15
Identities = 22/89 (24%), Positives = 31/89 (34%), Gaps = 2/89 (2%)
Query: 2 PPILTYSFIEQTLQPGPAVSLKCIASGNPTPDIGWTLDGFELPTNNRFVIGQF--VSGHG 59
PP + + + G +L C A G PTP I W G + T+ +
Sbjct: 9 PPRIVEHPSDLIVSKGEPATLNCKAEGRPTPTIEWYKGGERVETDKDDPRSHRMLLPSGS 68
Query: 60 DVISHVNISHVTVEDGGEYACVAENRAGT 88
+ + D G Y CVA N G
Sbjct: 69 LFFLRIVHGRKSRPDEGVYVCVARNYLGE 97
Score = 54.4 bits (131), Expect = 8e-10
Identities = 28/106 (26%), Positives = 39/106 (36%), Gaps = 11/106 (10%)
Query: 189 EKVPPKIESFAFPFDGL-PEGARTRVICGVTHGDPPLTIRWLKDGKPLSPRFPVNVSDLD 247
E PP+I P D + +G + C G P TI W K G+ + S
Sbjct: 6 EDFPPRIVEH--PSDLIVSKGEPATLNCKAE-GRPTPTIEWYKGGERVETDKDDPRSHRM 62
Query: 248 SFS--SLLSIN----SVSAAHSGEYTCVASNTAAQAR-YSSKLQVK 286
SL + S G Y CVA N +A + + L+V
Sbjct: 63 LLPSGSLFFLRIVHGRKSRPDEGVYVCVARNYLGEAVSHDASLEVA 108
>1wit_A Twitchin 18TH IGSF module; immunoglobulin superfamily, I SET,
muscle protein; NMR {Caenorhabditis elegans} SCOP:
b.1.1.4 PDB: 1wiu_A
Length = 93
Score = 69.3 bits (170), Expect = 2e-15
Identities = 17/98 (17%), Positives = 31/98 (31%), Gaps = 7/98 (7%)
Query: 191 VPPKIESFAFPFDGLPEGARTRVICGVTHGDPPLTIRWLKDGKPL--SPRFPVNVSDLDS 248
+ PKI + + + G + G P T W +P V+
Sbjct: 1 LKPKILTASRKIK-IKAGFTHNLEVDFI-GAPDPTATWTVGDSGAALAPELLVDAKS--- 55
Query: 249 FSSLLSINSVSAAHSGEYTCVASNTAAQARYSSKLQVK 286
++ + S A SG Y N + ++ V+
Sbjct: 56 STTSIFFPSAKRADSGNYKLKVKNELGEDEAIFEVIVQ 93
Score = 67.3 bits (165), Expect = 9e-15
Identities = 14/91 (15%), Positives = 27/91 (29%), Gaps = 5/91 (5%)
Query: 2 PPILTYSFIEQTLQPGPAVSLKCIASGNPTPDIGWTLDGFELPTNNRFVIGQFVSGHGDV 61
P + + + ++ G +L+ G P P WT+ ++
Sbjct: 2 KPKILTASRKIKIKAGFTHNLEVDFIGAPDPTATWTVGDSGAALAPELLVDA-----KSS 56
Query: 62 ISHVNISHVTVEDGGEYACVAENRAGTCEIT 92
+ + D G Y +N G E
Sbjct: 57 TTSIFFPSAKRADSGNYKLKVKNELGEDEAI 87
>2yr3_A Myosin light chain kinase, smooth muscle; IG domain, structural
genomics, NPPSFA, national project on protein
structural and functional analyses; NMR {Homo sapiens}
Length = 99
Score = 68.9 bits (169), Expect = 3e-15
Identities = 21/89 (23%), Positives = 32/89 (35%), Gaps = 8/89 (8%)
Query: 2 PPILTYSFIEQTLQPGPAVSLKCIASGNPTPDIGWTLDGFELPTNNRFVIGQFVSGHGDV 61
P + + + G L+C G P P I W L+G +
Sbjct: 11 APSFSSVLKDCAVIEGQDFVLQCSVRGTPVPRITWLLNGQPIQYARSTCEAG-------- 62
Query: 62 ISHVNISHVTVEDGGEYACVAENRAGTCE 90
++ ++I ED G Y C+AEN G
Sbjct: 63 VAELHIQDALPEDHGTYTCLAENALGQVS 91
Score = 65.0 bits (159), Expect = 9e-14
Identities = 22/80 (27%), Positives = 31/80 (38%), Gaps = 5/80 (6%)
Query: 206 PEGARTRVICGVTHGDPPLTIRWLKDGKPLSPRFPVNVSDLDSFSSLLSINSVSAAHSGE 265
EG + C V G P I WL +G+P+ + + L I G
Sbjct: 24 IEGQDFVLQCSVR-GTPVPRITWLLNGQPIQYARSTCEAGVAE----LHIQDALPEDHGT 78
Query: 266 YTCVASNTAAQARYSSKLQV 285
YTC+A N Q S+ + V
Sbjct: 79 YTCLAENALGQVSCSAWVTV 98
Score = 48.9 bits (117), Expect = 6e-08
Identities = 16/55 (29%), Positives = 23/55 (41%), Gaps = 6/55 (10%)
Query: 101 IAWFKDGRQIP-GRTSST----SLVINPVGREDRGIYQCIARRSDGDVAQGSAEL 150
I W +G+ I R++ L I ED G Y C+A + G SA +
Sbjct: 43 ITWLLNGQPIQYARSTCEAGVAELHIQDALPEDHGTYTCLAENALG-QVSCSAWV 96
>2dm2_A Palladin; beta-sandwich, KIAA0992, actin-associated scaffold,
structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 110
Score = 68.9 bits (169), Expect = 4e-15
Identities = 20/89 (22%), Positives = 33/89 (37%), Gaps = 3/89 (3%)
Query: 2 PPILTYSFIEQTLQPGPAVSLKCIASGNPTPDIGWTLDGFELPTNNRFVIGQFVSGHGDV 61
P + G V+ C +GNP P I W DG ++ + + D
Sbjct: 8 APFFEMKLKHYKIFEGMPVTFTCRVAGNPKPKIYWFKDGKQISPKSDHYT---IQRDLDG 64
Query: 62 ISHVNISHVTVEDGGEYACVAENRAGTCE 90
++ + T++D G Y +A N G
Sbjct: 65 TCSLHTTASTLDDDGNYTIMAANPQGRIS 93
Score = 65.5 bits (160), Expect = 7e-14
Identities = 24/83 (28%), Positives = 34/83 (40%), Gaps = 4/83 (4%)
Query: 206 PEGARTRVICGVTHGDPPLTIRWLKDGKPL--SPRFPVNVSDLDSFSSLLSINSVSAAHS 263
EG C V G+P I W KDGK + DLD SL + +
Sbjct: 21 FEGMPVTFTCRVA-GNPKPKIYWFKDGKQISPKSDHYTIQRDLDGTCSLH-TTASTLDDD 78
Query: 264 GEYTCVASNTAAQARYSSKLQVK 286
G YT +A+N + + +L V+
Sbjct: 79 GNYTIMAANPQGRISCTGRLMVQ 101
>2cr3_A Basic fibroblast growth factor receptor 1; IG fold, FGFR1,
BFGF-R, structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 99
Score = 68.2 bits (167), Expect = 5e-15
Identities = 20/77 (25%), Positives = 30/77 (38%), Gaps = 10/77 (12%)
Query: 12 QTLQPGPAVSLKCIASGNPTPDIGWTLDGFELPTNNRFVIGQFVSGHGDVISHVNISHVT 71
+ PG + L+C + I W DG +L +NR I V +
Sbjct: 13 FLVHPGDLLQLRCRLRDDV-QSINWLRDGVQLAESNRTRITG---------EEVEVQDSV 62
Query: 72 VEDGGEYACVAENRAGT 88
D G YACV + +G+
Sbjct: 63 PADSGLYACVTSSPSGS 79
Score = 66.3 bits (162), Expect = 3e-14
Identities = 18/84 (21%), Positives = 31/84 (36%), Gaps = 11/84 (13%)
Query: 205 LPEGARTRVICGVTHGDPPLTIRWLKDGKPLSP--RFPVNVSDLDSFSSLLSINSVSAAH 262
+ G ++ C + D +I WL+DG L+ R + + + A
Sbjct: 15 VHPGDLLQLRCRLR-DDVQ-SINWLRDGVQLAESNRTRIT-------GEEVEVQDSVPAD 65
Query: 263 SGEYTCVASNTAAQARYSSKLQVK 286
SG Y CV S+ + + V
Sbjct: 66 SGLYACVTSSPSGSDTTYFSVNVS 89
Score = 48.2 bits (115), Expect = 1e-07
Identities = 12/45 (26%), Positives = 19/45 (42%), Gaps = 4/45 (8%)
Query: 101 IAWFKDGRQIP--GRT--SSTSLVINPVGREDRGIYQCIARRSDG 141
I W +DG Q+ RT + + + D G+Y C+ G
Sbjct: 34 INWLRDGVQLAESNRTRITGEEVEVQDSVPADSGLYACVTSSPSG 78
>2cqv_A MLCK, myosin light chain kinase, smooth muscle and non- muscle
isozymes; IG fold, structural genomics, NPPSFA; NMR
{Homo sapiens} SCOP: b.1.1.4
Length = 114
Score = 68.5 bits (168), Expect = 6e-15
Identities = 20/79 (25%), Positives = 31/79 (39%), Gaps = 2/79 (2%)
Query: 207 EGARTRVICGVTHGDPPLTIRWLKDGKPLSPRFPVNVSDLDSFSSLLSINSVSAAHSGEY 266
G + VT G P+T W+K K + + V + ++ S L I + H G Y
Sbjct: 21 AGESVELFGKVT-GTQPITCTWMKFRKQIQESEHMKVENSENGSKLT-ILAARQEHCGCY 78
Query: 267 TCVASNTAAQARYSSKLQV 285
T + N + L V
Sbjct: 79 TLLVENKLGSRQAQVNLTV 97
Score = 66.2 bits (162), Expect = 4e-14
Identities = 15/92 (16%), Positives = 33/92 (35%), Gaps = 5/92 (5%)
Query: 1 TPPILTYSFIEQTLQPGPAVSLKCIASGNPTPDIGWTLDGFELPTNNRFVIGQFVSGHGD 60
+ P + +Q ++ G +V L +G W ++ + + + +
Sbjct: 6 SGPQIIQFPEDQKVRAGESVELFGKVTGTQPITCTWMKFRKQIQESEHMKV-----ENSE 60
Query: 61 VISHVNISHVTVEDGGEYACVAENRAGTCEIT 92
S + I E G Y + EN+ G+ +
Sbjct: 61 NGSKLTILAARQEHCGCYTLLVENKLGSRQAQ 92
Score = 43.1 bits (102), Expect = 8e-06
Identities = 13/64 (20%), Positives = 18/64 (28%), Gaps = 9/64 (14%)
Query: 101 IAWFKDGRQIP--GRTS------STSLVINPVGREDRGIYQCIARRSDGDVAQGSAELQL 152
W K +QI + L I +E G Y + G Q L +
Sbjct: 39 CTWMKFRKQIQESEHMKVENSENGSKLTILAARQEHCGCYTLLVENKLGS-RQAQVNLTV 97
Query: 153 GGLP 156
P
Sbjct: 98 VDKP 101
>1he7_A High affinity nerve growth factor receptor; transferase,
TRK-receptor, strand-swapping; 2.0A {Homo sapiens} SCOP:
b.1.1.4 PDB: 1wwa_X 1www_X
Length = 126
Score = 68.8 bits (168), Expect = 8e-15
Identities = 20/101 (19%), Positives = 32/101 (31%), Gaps = 11/101 (10%)
Query: 192 PPKIESFAFPFDGLPEGARTRVICGVTHGDPPLTIRWLKDGKPLSP------RFPVNVSD 245
P I G P ++RWL +G L+ F ++
Sbjct: 3 MPASVQL-----HTAVEMHHWCIPFSVDGQPAPSLRWLFNGSVLNETSFIFTEFLEPAAN 57
Query: 246 LDSFSSLLSINSVSAAHSGEYTCVASNTAAQARYSSKLQVK 286
L +N + ++G YT +A+N QA S
Sbjct: 58 ETVRHGCLRLNQPTHVNNGNYTLLAANPFGQASASIMAAFM 98
Score = 59.6 bits (144), Expect = 1e-11
Identities = 12/75 (16%), Positives = 24/75 (32%), Gaps = 2/75 (2%)
Query: 20 VSLKCIASGNPTPDIGWTLDGFELPTNNRFV--IGQFVSGHGDVISHVNISHVTVEDGGE 77
+ G P P + W +G L + + + + ++ T + G
Sbjct: 18 WCIPFSVDGQPAPSLRWLFNGSVLNETSFIFTEFLEPAANETVRHGCLRLNQPTHVNNGN 77
Query: 78 YACVAENRAGTCEIT 92
Y +A N G +
Sbjct: 78 YTLLAANPFGQASAS 92
Score = 38.0 bits (88), Expect = 6e-04
Identities = 11/72 (15%), Positives = 18/72 (25%), Gaps = 16/72 (22%)
Query: 101 IAWFKDGRQIP---------------GRTSSTSLVINPVGREDRGIYQCIARRSDGDVAQ 145
+ W +G + L +N + G Y +A G A
Sbjct: 32 LRWLFNGSVLNETSFIFTEFLEPAANETVRHGCLRLNQPTHVNNGNYTLLAANPFG-QAS 90
Query: 146 GSAELQLGGLPY 157
S P+
Sbjct: 91 ASIMAAFMDNPF 102
>2kkq_A Myotilin; unknown function, actin-binding, cell membrane,
cytoplasm, cytoskeleton, disease mutation,
immunoglobulin domain; NMR {Homo sapiens}
Length = 116
Score = 68.2 bits (167), Expect = 8e-15
Identities = 20/89 (22%), Positives = 32/89 (35%), Gaps = 3/89 (3%)
Query: 2 PPILTYSFIEQTLQPGPAVSLKCIASGNPTPDIGWTLDGFELPTNNRFVIGQFVSGHGDV 61
P+ Y + + G +V L+C S P P + W + + N + +
Sbjct: 15 APMFIYKPQSKKVLEGDSVKLECQISAIPPPKLFWKRNNEMVQFNTDRI---SLYQDNTG 71
Query: 62 ISHVNISHVTVEDGGEYACVAENRAGTCE 90
+ I V +D G Y A N AG
Sbjct: 72 RVTLLIKDVNKKDAGWYTVSAVNEAGVTT 100
Score = 63.6 bits (155), Expect = 4e-13
Identities = 18/84 (21%), Positives = 35/84 (41%), Gaps = 6/84 (7%)
Query: 206 PEGARTRVICGVTHGDPPLTIRWLKDGKPLSP---RFPVNVSDLDSFSSLLSINSVSAAH 262
EG ++ C ++ PP + W ++ + + R + + + L I V+
Sbjct: 28 LEGDSVKLECQIS-AIPPPKLFWKRNNEMVQFNTDRISLYQDNTGRVT--LLIKDVNKKD 84
Query: 263 SGEYTCVASNTAAQARYSSKLQVK 286
+G YT A N A +++L V
Sbjct: 85 AGWYTVSAVNEAGVTTCNTRLDVT 108
>1hnf_A CD2; T lymphocyte adhesion glycoprotein; HET: NAG; 2.50A {Homo
sapiens} SCOP: b.1.1.1 b.1.1.3 PDB: 1cdb_A 1gya_A*
1qa9_A
Length = 182
Score = 69.9 bits (171), Expect = 8e-15
Identities = 29/198 (14%), Positives = 56/198 (28%), Gaps = 61/198 (30%)
Query: 94 YDSGPYLIAWFKDGRQIPGR------TSSTSLVINPVGREDRGIYQCIARRSDGDVAQGS 147
S IA F+ ++ + +L I + +D+ IY+ + G
Sbjct: 37 KTSDKKKIAQFRKEKETFKEKDTYKLFKNGTLKIKHLKTDDQDIYKVSIYDTKG-KNVLE 95
Query: 148 AELQLGGLPYVRLIPKVTAIDGEGLSIKCPVAGYPIEEVHWEKVPPKIESFAFPFDGLPE 207
L ++ +V+ PKI
Sbjct: 96 KIFDL------KIQERVS--------------------------KPKISW---------T 114
Query: 208 GARTRVICGVTHGDPPLTIRWLKDGKPLSPRFPVNVSDLDSFSSLLSINSVSAAHSGEYT 267
T + C V +G P + +DGK L S + + + + S ++
Sbjct: 115 CINTTLTCEVMNGTDP-ELNLYQDGKHLKL------------SQRVITHKWTTSLSAKFK 161
Query: 268 CVASNTAAQARYSSKLQV 285
C A N ++ +
Sbjct: 162 CTAGNKVSKESSVEPVSC 179
Score = 59.1 bits (143), Expect = 7e-11
Identities = 16/150 (10%), Positives = 36/150 (24%), Gaps = 37/150 (24%)
Query: 21 SLKCIASGNPTPDIGWTLDGFELPTNNRFVIGQFVSGHGDVISHVN-----ISHVTVEDG 75
+ + DI W + +F + D I H+ +D
Sbjct: 20 DIPSFQMSDDIDDIKWEKTSDKKKIA-QFRKEKETFKEKDTYKLFKNGTLKIKHLKTDDQ 78
Query: 76 GEYACVAENRAGTCEITPY---------------------------DSGPYL-IAWFKDG 107
Y + G + +G + ++DG
Sbjct: 79 DIYKVSIYDTKGKNVLEKIFDLKIQERVSKPKISWTCINTTLTCEVMNGTDPELNLYQDG 138
Query: 108 RQIPGRTSSTSLVINPVGREDRGIYQCIAR 137
+ + S ++ + ++C A
Sbjct: 139 KHLK---LSQRVITHKWTTSLSAKFKCTAG 165
Score = 46.8 bits (111), Expect = 1e-06
Identities = 11/75 (14%), Positives = 20/75 (26%), Gaps = 18/75 (24%)
Query: 20 VSLKCIASGNPTPDIGWTLDGFELPTNNRFVIGQFVSGHGDVISHVNISHVTVEDGGEYA 79
+L C P++ DG L + R + T ++
Sbjct: 118 TTLTCEVMNGTDPELNLYQDGKHLKLSQRVI----------------THKWTTSLSAKFK 161
Query: 80 CVAENRAG--TCEIT 92
C A N+ +
Sbjct: 162 CTAGNKVSKESSVEP 176
Score = 41.4 bits (97), Expect = 9e-05
Identities = 14/115 (12%), Positives = 26/115 (22%), Gaps = 32/115 (27%)
Query: 172 LSIKCPVAGYPIEEVHWEKVPPKIESFAFPFDGLPEGARTRVICGVTHGDPPLTIRWLKD 231
L I I+++ WEK K + F + +
Sbjct: 19 LDIPSFQMSDDIDDIKWEKTSDKKKIAQFRKEKETFKEKDTY------------------ 60
Query: 232 GKPLSPRFPVNVSDLDSFSSLLSINSVSAAHSGEYTCVASNTAAQARYSSKLQVK 286
+ N + L I + Y +T + +K
Sbjct: 61 ------KLFKNGT--------LKIKHLKTDDQDIYKVSIYDTKGKNVLEKIFDLK 101
>2ens_A Advanced glycosylation END product-specific receptor;
beta-sandwich, C2-SET, structural genomics, NPPSFA; NMR
{Homo sapiens}
Length = 96
Score = 67.1 bits (164), Expect = 1e-14
Identities = 19/80 (23%), Positives = 32/80 (40%), Gaps = 11/80 (13%)
Query: 206 PEGARTRVICGVTHGDPPLTIRWLKDGKPLSPRFPVNVSDLDSFSSLLSINSVSAAHSGE 265
G + C V P I W+KDG PL S +L + + G
Sbjct: 23 APGGTVTLTCEVP-AQPSPQIHWMKDGVPLPL----------PPSPVLILPEIGPQDQGT 71
Query: 266 YTCVASNTAAQARYSSKLQV 285
Y+CVA++++ + S + +
Sbjct: 72 YSCVATHSSHGPQESRAVSI 91
Score = 66.3 bits (162), Expect = 3e-14
Identities = 20/91 (21%), Positives = 32/91 (35%), Gaps = 14/91 (15%)
Query: 2 PPILTYSFIEQTLQPGPAVSLKCIASGNPTPDIGWTLDGFELPTNNRFVIGQFVSGHGDV 61
L + PG V+L C P+P I W DG LP
Sbjct: 10 EVQLVVEPEGGAVAPGGTVTLTCEVPAQPSPQIHWMKDGVPLPLPPS------------- 56
Query: 62 ISHVNISHVTVEDGGEYACVAENRAGTCEIT 92
+ + + +D G Y+CVA + + + +
Sbjct: 57 -PVLILPEIGPQDQGTYSCVATHSSHGPQES 86
Score = 52.8 bits (127), Expect = 2e-09
Identities = 17/52 (32%), Positives = 26/52 (50%), Gaps = 2/52 (3%)
Query: 101 IAWFKDGRQIPGRTSSTSLVINPVGREDRGIYQCIARRSDGDVAQGSAELQL 152
I W KDG +P S L++ +G +D+G Y C+A S Q S + +
Sbjct: 42 IHWMKDGVPLPLPPSPV-LILPEIGPQDQGTYSCVATHSSHGP-QESRAVSI 91
>1gxe_A Myosin binding protein C, cardiac-type; cytoskeleton, muscle, IGI,
thick filament, immunoglobulin domain; NMR {Homo
sapiens} SCOP: b.1.1.4
Length = 139
Score = 68.2 bits (166), Expect = 2e-14
Identities = 19/122 (15%), Positives = 36/122 (29%), Gaps = 12/122 (9%)
Query: 164 VTAIDGEGLSIKCPVAGYPIEEVHWEKVPPKIESFAFPFDGLPEGARTRVICGVTHGDPP 223
+ + G L + P++G P V W+K D
Sbjct: 28 IVVVAGNKLRLDVPISGDPAPTVIWQK------------AITQGNKAPARPAPDAPEDTG 75
Query: 224 LTIRWLKDGKPLSPRFPVNVSDLDSFSSLLSINSVSAAHSGEYTCVASNTAAQARYSSKL 283
+ W+ D K L + S+ ++ G YT N + + + +
Sbjct: 76 DSDEWVFDKKLLCETEGRVRVETTKDRSIFTVEGAEKEDEGVYTVTVKNPVGEDQVNLTV 135
Query: 284 QV 285
+V
Sbjct: 136 KV 137
Score = 49.4 bits (117), Expect = 8e-08
Identities = 16/106 (15%), Positives = 25/106 (23%), Gaps = 24/106 (22%)
Query: 11 EQTLQPGPAVSLKCIASGNPTPDIGWTLDGFELPTNNRFVIGQFVSGHGDVISHVN---- 66
+ G + L SG+P P + W + GD V
Sbjct: 27 TIVVVAGNKLRLDVPISGDPAPTVIWQKAITQGNKAPARPAPDAPEDTGDSDEWVFDKKL 86
Query: 67 --------------------ISHVTVEDGGEYACVAENRAGTCEIT 92
+ ED G Y +N G ++
Sbjct: 87 LCETEGRVRVETTKDRSIFTVEGAEKEDEGVYTVTVKNPVGEDQVN 132
>3shs_A HOC head outer capsid protein; immunoglobulin-like domain, phage
capsid decorative protein, interaction with bacteria;
1.95A {Enterobacteria phage RB49}
Length = 304
Score = 71.0 bits (173), Expect = 2e-14
Identities = 41/335 (12%), Positives = 82/335 (24%), Gaps = 109/335 (32%)
Query: 2 PPILTYSFIEQTLQPGPAVSLKCIASGNPTPDIG----WTLDGFELPTNNRFVIGQFVSG 57
++ ++ G +L +G+ WT D N
Sbjct: 2 AFTVSIQSNKRCFLAGDGFTLTATVAGDEPLPSNLTYTWTKDDQPHENNT---------- 51
Query: 58 HGDVISHVNISHVTVEDGGEYACVAENRAG------------------------------ 87
+ + ++ T E+ G Y ++
Sbjct: 52 -----ATLTVADATSENAGSYKVTVQDTDTMTSVESEVFLMEEAELIVNITEPQHFYVSS 106
Query: 88 ------TCEIT------PYDSGPYLIAWFKDGRQIPGRTSSTSLVINPVGREDRGIYQCI 135
+ P D+ +W K I + + I + G+Y
Sbjct: 107 QTDVELHATVKFSGGKTPADNYELHYSWSKGEDVIDT---TQDITIQEFTADKNGVYTVK 163
Query: 136 ARRSDGDVAQGSAELQLGGLPYV---RLIPKVTAIDGEGLSIKCPVAGYPIEEVHWEKVP 192
D + SA ++ ++ T G +S+ V
Sbjct: 164 VWGESED-SAASASTKIMLATMNVDQDVVESKTVALGNEISLNYVV-------------- 208
Query: 193 PKIESFAFPFDGLPEGARTRVICGVTHGDPPLTIRW----LKDGKPLSPRFPVNVSDLDS 248
+ I G + G P LTI++ ++G+ V +
Sbjct: 209 ------------------SEDIVGDSSGMPNLTIKYNWYLQREGQLSPTLIGSEVGEALE 250
Query: 249 FSSL-----LSINSVSAAHSGEYTCVASNTAAQAR 278
S+ L S + + ++ CVA
Sbjct: 251 GFSITPDGHLFKESATYDDTAKFWCVAKLYQQIED 285
Score = 62.2 bits (150), Expect = 2e-11
Identities = 23/203 (11%), Positives = 50/203 (24%), Gaps = 51/203 (25%)
Query: 88 TCEIT--PYDSGPYLIAWFKDGRQIPGRTSSTSLVINPVGREDRGIYQCIARRSDGDVAQ 145
T + W KD + T++ L + E+ G Y+ + +D +
Sbjct: 23 TATVAGDEPLPSNLTYTWTKDDQPHENNTAT--LTVADATSENAGSYKVTVQDTDTMTSV 80
Query: 146 GSAELQLGGLPYVRLIPK---VTAIDGEGLSIKCPVAGYPIEEVHWEKVPPKIESFAFPF 202
S + + I + + + V
Sbjct: 81 ESEVFLMEEAELIVNITEPQHFYVSSQTDVELHATVKFS--------------------- 119
Query: 203 DGLPEGARTRVICGVTHGDPPLTIRWLKDGKPLSPRFPVNVSDLDSFSSLLSINSVSAAH 262
G + L W K + + ++I +A
Sbjct: 120 GGKT-----------PADNYELHYSWSKGEDVIDT------------TQDITIQEFTADK 156
Query: 263 SGEYTCVASNTAAQARYSSKLQV 285
+G YT + + S+ ++
Sbjct: 157 NGVYTVKVWGESEDSAASASTKI 179
Score = 47.9 bits (113), Expect = 1e-06
Identities = 14/82 (17%), Positives = 30/82 (36%), Gaps = 14/82 (17%)
Query: 207 EGARTRVICGVTHGDP---PLTIRWLKDGKPLSPRFPVNVSDLDSFSSLLSINSVSAAHS 263
G + V +P LT W KD +P + ++ L++ ++ ++
Sbjct: 16 AGDGFTLTATVAGDEPLPSNLTYTWTKDDQPHE-----------NNTATLTVADATSENA 64
Query: 264 GEYTCVASNTAAQARYSSKLQV 285
G Y +T S++ +
Sbjct: 65 GSYKVTVQDTDTMTSVESEVFL 86
Score = 40.6 bits (94), Expect = 3e-04
Identities = 21/105 (20%), Positives = 38/105 (36%), Gaps = 13/105 (12%)
Query: 1 TPPILTYSFIEQTLQPGPAVSLKCI--------ASGNPTPDIGWT----LDGFELPTNNR 48
T + +T+ G +SL + +SG P I + +G PT
Sbjct: 183 TMNVDQDVVESKTVALGNEISLNYVVSEDIVGDSSGMPNLTIKYNWYLQREGQLSPTLIG 242
Query: 49 FVIGQFVSGHGDVIS-HVNISHVTVEDGGEYACVAENRAGTCEIT 92
+G+ + G H+ T +D ++ CVA+ + T
Sbjct: 243 SEVGEALEGFSITPDGHLFKESATYDDTAKFWCVAKLYQQIEDET 287
Score = 36.0 bits (82), Expect = 0.009
Identities = 17/203 (8%), Positives = 36/203 (17%), Gaps = 73/203 (35%)
Query: 1 TPPILTYSFIEQTLQPGPAVSLKC---IASGNPTPDIGWTLDGFELPTNNRFVIGQFVSG 57
+ + V L + G D + +
Sbjct: 91 ELIVNITEPQHFYVSSQTDVELHATVKFSGGKTPADNYE-------LHYSWSKGEDVIDT 143
Query: 58 HGDVISHVNISHVTVEDGGEYACVAENRAGT----------------------------- 88
D+ I T + G Y +
Sbjct: 144 TQDI----TIQEFTADKNGVYTVKVWGESEDSAASASTKIMLATMNVDQDVVESKTVALG 199
Query: 89 --------------CEITPYDSGPYLIAWF--KDGRQIPGRTSST--------------S 118
+ + + W+ ++G+ P S
Sbjct: 200 NEISLNYVVSEDIVGDSSGMPNLTIKYNWYLQREGQLSPTLIGSEVGEALEGFSITPDGH 259
Query: 119 LVINPVGREDRGIYQCIARRSDG 141
L +D + C+A+
Sbjct: 260 LFKESATYDDTAKFWCVAKLYQQ 282
>2x1w_L Vascular endothelial growth factor receptor 2; hormone-signaling
protein complex, angiogenesis, glycoprotein, HOST-virus
interaction, membrane; HET: NAG BMA; 2.70A {Homo
sapiens} PDB: 2x1x_R*
Length = 213
Score = 69.4 bits (169), Expect = 3e-14
Identities = 33/214 (15%), Positives = 61/214 (28%), Gaps = 54/214 (25%)
Query: 88 TCEITPYDSGPYLIAWFKDGRQIPGRT-----SSTSLVINPVGREDRGIYQCIARRSDGD 142
C + + L A + + R +P S I G+ C A+ +D
Sbjct: 30 PCLGSISNLNVSLCARYPEKRFVPDGNRISWDSKKGFTIPSYMISYAGMVFCEAKINDES 89
Query: 143 VAQGSAELQLGGLPYVRLI----PKVTAIDGEGLSIKCPVAGYPIEEVHWEKVPPKIESF 198
+ + G ++ + GE L + C
Sbjct: 90 YQSIMYIVVVVGYRIYDVVLSPSHGIELSVGEKLVLNCTARTEL---------------- 133
Query: 199 AFPFDGLPEGARTRVICGVTHGDPPLTIRWLKDGKPLSPRFPVN-------VSDLDSFSS 251
+ + W + VN S++ F S
Sbjct: 134 ----------------------NVGIDFNWEYPSSKHQHKKLVNRDLKTQSGSEMKKFLS 171
Query: 252 LLSINSVSAAHSGEYTCVASNTAAQARYSSKLQV 285
L+I+ V+ + G YTC AS+ + S+ ++V
Sbjct: 172 TLTIDGVTRSDQGLYTCAASSGLMTKKNSTFVRV 205
Score = 55.2 bits (132), Expect = 2e-09
Identities = 21/92 (22%), Positives = 29/92 (31%), Gaps = 5/92 (5%)
Query: 2 PPILTYSFIEQTLQPGPAVSLKCIASGNPTPDIG--WTLDGFELP---TNNRFVIGQFVS 56
++ L G + L C A I W + NR + Q S
Sbjct: 105 YDVVLSPSHGIELSVGEKLVLNCTARTELNVGIDFNWEYPSSKHQHKKLVNRDLKTQSGS 164
Query: 57 GHGDVISHVNISHVTVEDGGEYACVAENRAGT 88
+S + I VT D G Y C A + T
Sbjct: 165 EMKKFLSTLTIDGVTRSDQGLYTCAASSGLMT 196
Score = 43.6 bits (102), Expect = 2e-05
Identities = 10/96 (10%), Positives = 26/96 (27%), Gaps = 3/96 (3%)
Query: 191 VPPKIESFAFPFDGLPEGARTRVICGVTHGDPPLTIRWLKDGKPLSPRFPVNVSDLDSFS 250
+ + + + + C + + +++ K P D
Sbjct: 7 IASVSDQHGVVYITENKNKTVVIPCLGSISNLNVSLCARYPEKRFVPDGNRISWDSKKG- 65
Query: 251 SLLSINSVSAAHSGEYTCVASNTAAQARYSSKLQVK 286
+I S +++G C A + + V
Sbjct: 66 --FTIPSYMISYAGMVFCEAKINDESYQSIMYIVVV 99
>1gl4_B Basement membrane-specific heparan sulfate proteoglycan core
protein; immunoglobulin-like domain, extracellular
matrix; HET: EPE; 2.0A {Mus musculus} SCOP: b.1.1.4
Length = 98
Score = 66.4 bits (162), Expect = 3e-14
Identities = 21/96 (21%), Positives = 35/96 (36%), Gaps = 8/96 (8%)
Query: 192 PPKIESFAFPFDGLPEGARTRVICGVTHGDPPLTIRWLK-DGKPLSPRFPVNVSDLDSFS 250
P + + GA IC P T+ W + L R +
Sbjct: 9 PIMVTVEEQRSQSVRPGADVTFICTAKSKSPAYTLVWTRLHNGKLPSRAMDF-------N 61
Query: 251 SLLSINSVSAAHSGEYTCVASNTAAQARYSSKLQVK 286
+L+I +V + +G Y C SN A + ++ L V+
Sbjct: 62 GILTIRNVQPSDAGTYVCTGSNMFAMDQGTATLHVQ 97
Score = 65.2 bits (159), Expect = 7e-14
Identities = 21/89 (23%), Positives = 31/89 (34%), Gaps = 13/89 (14%)
Query: 2 PPILTYSFIEQTLQPGPAVSLKCIA-SGNPTPDIGWT-LDGFELPTNNRFVIGQFVSGHG 59
+ Q+++PG V+ C A S +P + WT L +LP+ G
Sbjct: 10 IMVTVEEQRSQSVRPGADVTFICTAKSKSPAYTLVWTRLHNGKLPSRAMDFNGILT---- 65
Query: 60 DVISHVNISHVTVEDGGEYACVAENRAGT 88
I +V D G Y C N
Sbjct: 66 -------IRNVQPSDAGTYVCTGSNMFAM 87
Score = 41.7 bits (98), Expect = 2e-05
Identities = 14/54 (25%), Positives = 21/54 (38%), Gaps = 4/54 (7%)
Query: 101 IAWFK-DGRQIPGRT--SSTSLVINPVGREDRGIYQCIARRSDGDVAQGSAELQ 151
+ W + ++P R + L I V D G Y C + QG+A L
Sbjct: 43 LVWTRLHNGKLPSRAMDFNGILTIRNVQPSDAGTYVCTGSNMFA-MDQGTATLH 95
>3mtr_A N-CAM-1, NCAM-1, neural cell adhesion molecule 1; immunoglobulin
domain, fibronectin type III repeat, CE adhesion; 1.80A
{Homo sapiens}
Length = 215
Score = 67.2 bits (164), Expect = 1e-13
Identities = 25/97 (25%), Positives = 34/97 (35%), Gaps = 6/97 (6%)
Query: 191 VPPKIESFAFPFD-GLPEGARTRVICGVTHGDPPLTIRWLKDGKPLSPRFPVNVS-DLDS 248
PK++ P EG + + C V P TI W +DG+ L N+
Sbjct: 18 YAPKLQG---PVAVYTWEGNQVNITCEVF-AYPSATISWFRDGQLLPSSNYSNIKIYNTP 73
Query: 249 FSSLLSINSVSAAHSGEYTCVASNTAAQARYSSKLQV 285
+S L + S G Y C A N Q L
Sbjct: 74 SASYLEVTPDSENDFGNYNCTAVNRIGQESLEFILVQ 110
Score = 65.6 bits (160), Expect = 5e-13
Identities = 23/91 (25%), Positives = 37/91 (40%), Gaps = 4/91 (4%)
Query: 2 PPILTYSFIEQTLQPGPAVSLKCIASGNPTPDIGWTLDGFELPTNNRFVIGQFVSGHGDV 61
P L + G V++ C P+ I W DG LP++N I + +
Sbjct: 19 APKLQGP-VAVYTWEGNQVNITCEVFAYPSATISWFRDGQLLPSSNYSNIKIYNTPSA-- 75
Query: 62 ISHVNISHVTVEDGGEYACVAENRAGTCEIT 92
S++ ++ + D G Y C A NR G +
Sbjct: 76 -SYLEVTPDSENDFGNYNCTAVNRIGQESLE 105
>2cry_A KIN of IRRE-like protein 3; IG fold, KIN of irregular chiasm-like
protein 3, nephrin- like 2, structural genomics, NPPSFA;
NMR {Homo sapiens} SCOP: b.1.1.1
Length = 122
Score = 64.9 bits (158), Expect = 2e-13
Identities = 27/91 (29%), Positives = 39/91 (42%), Gaps = 6/91 (6%)
Query: 2 PPILTYSFIEQTLQPGPAVSLKCIASGNPTPD-IGWTLDGFELPTNN--RFVIGQFVSGH 58
PPI++ S Q G +KC P PD I W+ L + R+ + +
Sbjct: 14 PPIIS-STQTQHALHGEKGQIKCFIRSTPPPDRIAWSWKENVLESGTSGRYTVETISTEE 72
Query: 59 GDVISHVNISHVTVED-GGEYACVAENRAGT 88
G VIS + IS++ D Y C A N G+
Sbjct: 73 G-VISTLTISNIVRADFQTIYNCTAWNSFGS 102
Score = 63.8 bits (155), Expect = 4e-13
Identities = 22/103 (21%), Positives = 36/103 (34%), Gaps = 8/103 (7%)
Query: 190 KVPPKIESFAFPFDGLPEGARTRVICGVTHGDPPLTIRWLKDGKPLSP----RFPVNVSD 245
PP I S G + ++ C + PP I W L R+ V
Sbjct: 12 NGPPIISST--QTQHALHGEKGQIKCFIRSTPPPDRIAWSWKENVLESGTSGRYTVETIS 69
Query: 246 L-DSFSSLLSINSVSAAH-SGEYTCVASNTAAQARYSSKLQVK 286
+ S L+I+++ A Y C A N+ +L+ +
Sbjct: 70 TEEGVISTLTISNIVRADFQTIYNCTAWNSFGSDTEIIRLKEQ 112
Score = 35.3 bits (81), Expect = 0.006
Identities = 14/55 (25%), Positives = 19/55 (34%), Gaps = 15/55 (27%)
Query: 98 PYLIAWFKDGRQIPGRTSS--------------TSLVINPVGREDRG-IYQCIAR 137
P IAW + TS ++L I+ + R D IY C A
Sbjct: 43 PDRIAWSWKENVLESGTSGRYTVETISTEEGVISTLTISNIVRADFQTIYNCTAW 97
>2ch8_A BARF1, P33, 33 kDa early protein; viral protein, immunoglobulin
domain, oncogene; HET: NAG MAN; 2.3A {Epstein-barr
virus}
Length = 201
Score = 66.6 bits (162), Expect = 2e-13
Identities = 36/232 (15%), Positives = 55/232 (23%), Gaps = 67/232 (28%)
Query: 79 ACVAENRAGTCEITPYDSGP-YLIAWFKDGR-------------------------QIPG 112
A + E T GP ++WFK G I
Sbjct: 3 AFLGERVTLTSYWRRVSLGPEIEVSWFKLGPGEEQVLIGRMHHDVIFIEWPFRGFFDIHR 62
Query: 113 RTSSTSLVINPVGREDRGIYQCIARRSDGDVAQGSAELQLGGLPYVRLIPK-VTAIDGEG 171
++ LV+ G Y C + L + + + + D
Sbjct: 63 SANTFFLVVTAANISHDGNYLCRM-KLGETEVTKQEHLSVVKPLTLSVHSERSQFPDFSV 121
Query: 172 LSIKCPVAGYPIEEVHWEKVPPKIESFAFPFDGLPEGARTRVICGVTHGDPPLTIRWLKD 231
L++ C V +P V W + P A V + D L++
Sbjct: 122 LTVTCTVNAFPHPHVQWLMPEGVEPA--------PTAANGGV---MKEKDGSLSVA---- 166
Query: 232 GKPLSPRFPVNVSDLDSFSSLLSINSVSAAHSGEYTCVASNTA--AQARYSS 281
S+ TCV N A Y S
Sbjct: 167 ----------------------VDLSLPKPWHLPVTCVGKNDKEEAHGVYVS 196
Score = 62.4 bits (151), Expect = 7e-12
Identities = 13/86 (15%), Positives = 23/86 (26%), Gaps = 1/86 (1%)
Query: 2 PPILTYSFIEQTLQPGPAVSLKCIASGNPTPDIGWTLDGFELPTNNRFVIGQFVSGHGDV 61
P L+ +++ C + P P + W + P G G
Sbjct: 104 PLTLSVHSERSQFPDFSVLTVTCTVNAFPHPHVQWLMPEGVEPAPTAANGGVMKEKDGS- 162
Query: 62 ISHVNISHVTVEDGGEYACVAENRAG 87
+S + CV +N
Sbjct: 163 LSVAVDLSLPKPWHLPVTCVGKNDKE 188
Score = 47.3 bits (112), Expect = 1e-06
Identities = 26/126 (20%), Positives = 42/126 (33%), Gaps = 27/126 (21%)
Query: 164 VTAIDGEGLSIKCP---VAGYPIEEVHWEKVPPKIESFAFPFDGLPEGARTRVICGVTHG 220
VTA GE +++ V+ P EV W K+ P E V+ G H
Sbjct: 1 VTAFLGERVTLTSYWRRVSLGPEIEVSWFKLGPGEEQ---------------VLIGRMHH 45
Query: 221 DPPLTIRWLKDGKPLSPRFPVNVSDLDSFSSLLSINSVSAAHSGEYTCVASNTAAQARYS 280
D + P F ++ + + L + + + +H G Y C +
Sbjct: 46 DV------IFIEWPFRGFFDIHR---SANTFFLVVTAANISHDGNYLCRMKLGETEVTKQ 96
Query: 281 SKLQVK 286
L V
Sbjct: 97 EHLSVV 102
Score = 45.0 bits (106), Expect = 7e-06
Identities = 21/190 (11%), Positives = 42/190 (22%), Gaps = 60/190 (31%)
Query: 13 TLQPGPAVSLKCIA---SGNPTPDIGWTLDGFELPT-------NNRFVIGQFVSGHGDVI 62
T G V+L S P ++ W G ++ I G D+
Sbjct: 2 TAFLGERVTLTSYWRRVSLGPEIEVSWFKLGPGEEQVLIGRMHHDVIFIEWPFRGFFDIH 61
Query: 63 SHVN-----ISHVTVEDGGEYACVAENRAGTCE--------------ITPYD-------- 95
N ++ + G Y C + +
Sbjct: 62 RSANTFFLVVTAANISHDGNYLCRMKLGETEVTKQEHLSVVKPLTLSVHSERSQFPDFSV 121
Query: 96 -------SG---PYLIAWFKDGRQIPGRTSSTS------------LVINPVGREDRGIYQ 133
+ P+ + W P T++ V + +
Sbjct: 122 LTVTCTVNAFPHPH-VQWLMPEGVEPAPTAANGGVMKEKDGSLSVAVDLSLPKPWHLPVT 180
Query: 134 CIARRSDGDV 143
C+ + +
Sbjct: 181 CVGKNDKEEA 190
>2pet_A Lutheran blood group glycoprotein; immunoglobulin superfamily.,
cell adhesion; 1.70A {Homo sapiens} PDB: 2pf6_A
Length = 231
Score = 66.8 bits (162), Expect = 3e-13
Identities = 31/189 (16%), Positives = 53/189 (28%), Gaps = 47/189 (24%)
Query: 103 WFKDGRQIPGRTSST-SLVINPVGREDRGIYQCIARRSDGDVAQGSAELQLGGLPYVRLI 161
GR P + S LV+ D Y C+ R A+ +A L V
Sbjct: 62 HDTRGRSPPYQLDSQGRLVLAEAQVGDERDYVCVVRAGAAGTAEATARLN------VFAK 115
Query: 162 PKVTAIDGEGLSIKCPVAGYPIEEVHWEKVPPKIESFAFPFDGLPEGARTRVICGVTHGD 221
P+ ++ + + A+ C +G+
Sbjct: 116 PE----------------------------ATEVSPNKGTLSVMEDSAQEIATCNSRNGN 147
Query: 222 PPLTIRWLKDGKPLSPRFPVNVSD------------LDSFSSLLSINSVSAAHSGEYTCV 269
P I W ++G+ L +N L S +S L + + C
Sbjct: 148 PAPKITWYRNGQRLEVPVEMNPEGYMTSRTVREASGLLSLTSTLYLRLRKDDRDASFHCA 207
Query: 270 ASNTAAQAR 278
A + + R
Sbjct: 208 AHYSLPEGR 216
Score = 44.4 bits (104), Expect = 1e-05
Identities = 16/109 (14%), Positives = 30/109 (27%), Gaps = 9/109 (8%)
Query: 2 PPILTYSFIEQTLQPGPAVSLKCIAS-GNPTPDIGWTLDGFELPTNNRFVIGQFV----- 55
+ ++ C + GNP P I W +G L ++
Sbjct: 119 TEVSPNKGTLSVMEDSAQEIATCNSRNGNPAPKITWYRNGQRLEVPVEMNPEGYMTSRTV 178
Query: 56 ---SGHGDVISHVNISHVTVEDGGEYACVAENRAGTCEITPYDSGPYLI 101
SG + S + + + + C A DS + +
Sbjct: 179 REASGLLSLTSTLYLRLRKDDRDASFHCAAHYSLPEGRHGRLDSPTFHL 227
Score = 37.9 bits (87), Expect = 0.002
Identities = 20/126 (15%), Positives = 34/126 (26%), Gaps = 23/126 (18%)
Query: 162 PKVTAIDGEGLSIKCPVAGYP-IEEVHWEKVPPKIESFAFPFDGLPEGARTRVICGVTHG 220
P V + G+ + + C G + W GAR R+ G
Sbjct: 8 PLVEVMRGKSVILDCTPTGTHDHYMLEWFLTD-------------RSGARPRLASAEMQG 54
Query: 221 DPPLTIRWLKDGKPLSPRFPVNVSDLDSFSSLLSINSVSAAHSGEYTC-VASNTAAQARY 279
G+ + L + +Y C V + A A
Sbjct: 55 SELQVTMHDTRGRSPPYQLDSQGR--------LVLAEAQVGDERDYVCVVRAGAAGTAEA 106
Query: 280 SSKLQV 285
+++L V
Sbjct: 107 TARLNV 112
Score = 37.1 bits (85), Expect = 0.003
Identities = 28/199 (14%), Positives = 50/199 (25%), Gaps = 76/199 (38%)
Query: 16 PGPAVSLKCIASGNPTPD-IGWTLD---------------GFELPTNNRFVIGQFVSGHG 59
G +V L C +G + W L G EL G+
Sbjct: 14 RGKSVILDCTPTGTHDHYMLEWFLTDRSGARPRLASAEMQGSELQVTMHDTRGRSPPYQL 73
Query: 60 DVISHVNISHVTVEDGGEYACVAENRAG-------------------------------- 87
D + ++ V D +Y CV A
Sbjct: 74 DSQGRLVLAEAQVGDERDYVCVVRAGAAGTAEATARLNVFAKPEATEVSPNKGTLSVMED 133
Query: 88 ------TCEITPYDSGPYLIAWFKDGRQIPGR---------------------TSSTSLV 120
TC + P I W+++G+++ + +++L
Sbjct: 134 SAQEIATCNSRNGNPAP-KITWYRNGQRLEVPVEMNPEGYMTSRTVREASGLLSLTSTLY 192
Query: 121 INPVGREDRGIYQCIARRS 139
+ + + C A S
Sbjct: 193 LRLRKDDRDASFHCAAHYS 211
>2eny_A Obscurin; beta-sandwich, IG-fold, structural genomics, NPPSFA
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 104
Score = 63.6 bits (155), Expect = 3e-13
Identities = 11/73 (15%), Positives = 22/73 (30%), Gaps = 1/73 (1%)
Query: 206 PEGARTRVICGVTHGDPPLTIRWLKDGKPLSPRFPVNVSDLDSFSSLLSINSVSAAHSGE 265
EG C ++H W GK + + L+ + + + +GE
Sbjct: 21 LEGESCSFECVLSHESASDPAMWTVGGKTVGSSSRFQATRQGRKYILV-VREAAPSDAGE 79
Query: 266 YTCVASNTAAQAR 278
++A
Sbjct: 80 VVFSVRGLTSKAS 92
Score = 60.1 bits (146), Expect = 7e-12
Identities = 12/82 (14%), Positives = 28/82 (34%), Gaps = 6/82 (7%)
Query: 12 QTLQPGPAVSLKC-IASGNPTPDIGWTLDGFELPTNNRFVIGQFVSGHGDVISHVNISHV 70
+ G + S +C ++ + + WT+ G + +++RF + G + +
Sbjct: 18 MEVLEGESCSFECVLSHESASDPAMWTVGGKTVGSSSRFQA----TRQGRKYI-LVVREA 72
Query: 71 TVEDGGEYACVAENRAGTCEIT 92
D GE +
Sbjct: 73 APSDAGEVVFSVRGLTSKASLI 94
Score = 44.7 bits (106), Expect = 2e-06
Identities = 12/71 (16%), Positives = 19/71 (26%), Gaps = 14/71 (19%)
Query: 88 TCEITPYDSGPYLIAWFKDGRQIP--GRTSST------SLVINPVGREDRGIYQCIARRS 139
C ++ + W G+ + R +T LV+ D G R
Sbjct: 29 ECVLSHESASD-PAMWTVGGKTVGSSSRFQATRQGRKYILVVREAAPSDAGEVVFSVRG- 86
Query: 140 DGDVAQGSAEL 150
A L
Sbjct: 87 ----LTSKASL 93
>2edf_A Obscurin; beta-sandwich, IG-fold, structural genomics, NPPSFA
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 103
Score = 62.3 bits (152), Expect = 9e-13
Identities = 20/91 (21%), Positives = 37/91 (40%), Gaps = 6/91 (6%)
Query: 2 PPILTYSFIEQTLQPGPAVSLKCIASGNPTPDIGWTLDGFELPTNNRFVIGQFVSGHGDV 61
P + +Q + PG V L+C S TP + W D + + ++ +
Sbjct: 8 PAAIIKPLEDQWVAPGEDVELRCELSRAGTP-VHWLKDRKAIRKSQKYDVVC-----EGT 61
Query: 62 ISHVNISHVTVEDGGEYACVAENRAGTCEIT 92
++ + I +++D GEY C E T +
Sbjct: 62 MAMLVIRGASLKDAGEYTCEVEASKSTASLH 92
Score = 56.9 bits (138), Expect = 9e-11
Identities = 19/75 (25%), Positives = 30/75 (40%), Gaps = 7/75 (9%)
Query: 206 PEGARTRVICGVTHGDPPLTIRWLKDGKPL--SPRFPVNVSDLDSFSSLLSINSVSAAHS 263
G + C ++ P + WLKD K + S ++ V + L I S +
Sbjct: 21 APGEDVELRCELSRAGTP--VHWLKDRKAIRKSQKYDVVCEGTMAM---LVIRGASLKDA 75
Query: 264 GEYTCVASNTAAQAR 278
GEYTC + + A
Sbjct: 76 GEYTCEVEASKSTAS 90
Score = 41.5 bits (98), Expect = 3e-05
Identities = 17/73 (23%), Positives = 25/73 (34%), Gaps = 20/73 (27%)
Query: 88 TCEITPYDSGPYLIAWFKDGRQIP----------GRTSSTSLVINPVGREDRGIYQCIAR 137
CE++ + W KD + I G + LVI +D G Y C
Sbjct: 29 RCELS---RAGTPVHWLKDRKAIRKSQKYDVVCEGTMAM--LVIRGASLKDAGEYTCEVE 83
Query: 138 RSDGDVAQGSAEL 150
S + +A L
Sbjct: 84 AS-----KSTASL 91
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG
containing, ligand binding protein,membr protein; HET:
NAG MAN; 2.70A {Homo sapiens}
Length = 477
Score = 66.7 bits (163), Expect = 1e-12
Identities = 20/87 (22%), Positives = 31/87 (35%), Gaps = 5/87 (5%)
Query: 2 PPILTYSFIEQTLQPGPAVSLKCIASGNPTPDIGWTLDGFELPTNNRFVIGQFVSGHGDV 61
I + + G V C A G+P P I W L + ++ D
Sbjct: 385 ARIRDRKAQQVFVDEGHTVQFVCRADGDPPPAILWLSPRKHLVSAKS---NGRLTVFPD- 440
Query: 62 ISHVNISHVTVEDGGEYACVAENRAGT 88
+ + + V+D G Y C+A N G
Sbjct: 441 -GTLEVRYAQVQDNGTYLCIAANAGGN 466
Score = 55.9 bits (135), Expect = 4e-09
Identities = 20/96 (20%), Positives = 34/96 (35%), Gaps = 4/96 (4%)
Query: 192 PPKIESFAFPFDGLPEGARTRVICGVTHGDPPLTIRWLKD-GKPLSPRFPVNVSDLDSFS 250
+I + EG + +C GDPP I WL +S + ++
Sbjct: 384 RARIRDRKAQQVFVDEGHTVQFVCRAD-GDPPPAILWLSPRKHLVSAKSNGRLTVFPD-- 440
Query: 251 SLLSINSVSAAHSGEYTCVASNTAAQARYSSKLQVK 286
L + +G Y C+A+N + L V+
Sbjct: 441 GTLEVRYAQVQDNGTYLCIAANAGGNDSMPAHLHVR 476
>2cr6_A KIAA1556 protein, obscurin; IG-fold, immunoglobulin domain,
structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 115
Score = 62.0 bits (151), Expect = 1e-12
Identities = 14/91 (15%), Positives = 31/91 (34%), Gaps = 4/91 (4%)
Query: 2 PPILTYSFIEQTLQPGPAVSLKCIASGNPTPDIGWTLDGFELPTNNRFVIGQFVSGHGDV 61
+ + +Q G + + +C S + W LD L N I + G
Sbjct: 13 RVHIIEDLEDVDVQEGSSATFRCRISPANYEPVHWFLDKTPLHANELNEI---DAQPGGY 69
Query: 62 ISHVNISHVTVEDGGEYACVAENRAGTCEIT 92
+ + + ++D G A ++ + +
Sbjct: 70 HV-LTLRQLALKDSGTIYFEAGDQRASAALR 99
Score = 57.8 bits (140), Expect = 5e-11
Identities = 15/80 (18%), Positives = 27/80 (33%), Gaps = 5/80 (6%)
Query: 207 EGARTRVICGVTHGDPPLTIRWLKDGKPLSPRFPVNVSDLDSFSSLLSINSVSAAHSGEY 266
EG+ C ++ + W D PL + +L++ ++ SG
Sbjct: 27 EGSSATFRCRIS-PANYEPVHWFLDKTPLHANELNEIDAQPGGYHVLTLRQLALKDSGTI 85
Query: 267 TCVASNTAAQARYSSKLQVK 286
A + A A L+V
Sbjct: 86 YFEAGDQRASAA----LRVT 101
>1pd6_A Cardiac MYBP-C;, myosin-binding protein C, cardiac-type, domain C2;
IG domain, structural protein; NMR {Homo sapiens} SCOP:
b.1.1.4
Length = 104
Score = 61.2 bits (149), Expect = 2e-12
Identities = 17/81 (20%), Positives = 30/81 (37%), Gaps = 6/81 (7%)
Query: 206 PEGARTRVICGVTHGDPPLTIRWLKDGKPLSPRFPVNVSDLDSFSSLLSINSVSAAHSGE 265
+G + R+ + D ++WLK+G+ + + + L+I+ S A
Sbjct: 29 SKGHKIRLTVELA--DHDAEVKWLKNGQEIQMSGSKYIFESIGAKRTLTISQCSLADDAA 86
Query: 266 YTCVASNTAAQARYSSKLQVK 286
Y CV L VK
Sbjct: 87 YQCVVGGEKCSTE----LFVK 103
Score = 56.2 bits (136), Expect = 2e-10
Identities = 12/82 (14%), Positives = 30/82 (36%), Gaps = 7/82 (8%)
Query: 12 QTLQPGPAVSLKCIASGNPTPDIGWTLDGFEL-PTNNRFVIGQFVSGHGDVISHVNISHV 70
+ G + L + + ++ W +G E+ + ++++ + IS
Sbjct: 26 YQVSKGHKIRLTVELA-DHDAEVKWLKNGQEIQMSGSKYIFES-----IGAKRTLTISQC 79
Query: 71 TVEDGGEYACVAENRAGTCEIT 92
++ D Y CV + E+
Sbjct: 80 SLADDAAYQCVVGGEKCSTELF 101
Score = 41.6 bits (98), Expect = 3e-05
Identities = 16/75 (21%), Positives = 26/75 (34%), Gaps = 23/75 (30%)
Query: 88 TCEITPYDSGPYL-IAWFKDGRQI-----------PGRTSSTSLVINPVGREDRGIYQCI 135
T E+ + + W K+G++I G + L I+ D YQC+
Sbjct: 37 TVEL----ADHDAEVKWLKNGQEIQMSGSKYIFESIGAKRT--LTISQCSLADDAAYQCV 90
Query: 136 ARRSDGDVAQGSAEL 150
+ S EL
Sbjct: 91 VGG-----EKCSTEL 100
>2edk_A Myosin-binding protein C, fast-type; IG fold, fast MYBP-C,
C-protein, skeletal muscle fast- isoform, MYBPCF,
structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 101
Score = 59.7 bits (145), Expect = 9e-12
Identities = 18/91 (19%), Positives = 29/91 (31%), Gaps = 2/91 (2%)
Query: 2 PPILTYSFIEQTLQPGPAVSLKCIASGNPTPDIGWTLDGFELPTNNRFVIGQFVSGHGDV 61
P ++ +Q + G V + S + W +G EL + F G
Sbjct: 8 PVLIVTPLEDQQVFVGDRVEMAVEVS-EEGAQVMWMKNGVELTREDSFKARYRFKKDGKR 66
Query: 62 ISHVNISHVTVEDGGEYACVAENRAGTCEIT 92
+ S V ED G Y + E+
Sbjct: 67 HILI-FSDVVQEDRGRYQVITNGGQCEAELI 96
Score = 56.6 bits (137), Expect = 1e-10
Identities = 14/84 (16%), Positives = 28/84 (33%), Gaps = 11/84 (13%)
Query: 207 EGARTRVICGVTHGDPPLTIRWLKDGKPLSP----RFPVNVSDLDSFSSLLSINSVSAAH 262
G R + V+ + W+K+G L+ + L+ + V
Sbjct: 22 VGDRVEMAVEVSE--EGAQVMWMKNGVELTREDSFKARYRFKKDGKRHILI-FSDVVQED 78
Query: 263 SGEYTCVASNTAAQARYSSKLQVK 286
G Y + + +A +L V+
Sbjct: 79 RGRYQVITNGGQCEA----ELIVE 98
Score = 42.3 bits (100), Expect = 1e-05
Identities = 18/75 (24%), Positives = 27/75 (36%), Gaps = 20/75 (26%)
Query: 88 TCEITPYDSGPYLIAWFKDGRQIPGRTSST------------SLVINPVGREDRGIYQCI 135
E++ + W K+G ++ S L+ + V +EDRG YQ I
Sbjct: 29 AVEVS---EEGAQVMWMKNGVELTREDSFKARYRFKKDGKRHILIFSDVVQEDRGRYQVI 85
Query: 136 ARRSDGDVAQGSAEL 150
Q AEL
Sbjct: 86 TNGG-----QCEAEL 95
>1waa_A Titin; metal binding protein, calmodulin-binding, cytoskeleton,
immunoglobulin domain, muscle protein, phosphorylation,
repeat; 1.80A {Homo sapiens} PDB: 1waa_E 1waa_F 1tit_A
1tiu_A 2rq8_A
Length = 93
Score = 59.2 bits (144), Expect = 1e-11
Identities = 19/82 (23%), Positives = 34/82 (41%), Gaps = 11/82 (13%)
Query: 207 EGARTRVICGVTHGDPPLTIRWLKDGKPL--SPRFPVNVSDLDSFSSLLSINSVSAAHSG 264
G ++ P + +W G+PL SP + D +L +++ +G
Sbjct: 19 VGETAHFEIELSE--PDVHGQWKLKGQPLAASPDCEIIE---DGKKHILILHNCQLGMTG 73
Query: 265 EYTCVASNTAAQARYSSKLQVK 286
E + A+NT + A L+VK
Sbjct: 74 EVSFQAANTKSAAN----LKVK 91
Score = 55.8 bits (135), Expect = 1e-10
Identities = 13/81 (16%), Positives = 22/81 (27%), Gaps = 6/81 (7%)
Query: 12 QTLQPGPAVSLKCIASGNPTPDIGWTLDGFELPTNNRFVIGQFVSGHGDVISHVNISHVT 71
+ G + S P W L G L + I G + + +
Sbjct: 15 VEVFVGETAHFEIELS-EPDVHGQWKLKGQPLAASPDCEI----IEDGKKHILI-LHNCQ 68
Query: 72 VEDGGEYACVAENRAGTCEIT 92
+ GE + A N +
Sbjct: 69 LGMTGEVSFQAANTKSAANLK 89
Score = 40.7 bits (96), Expect = 4e-05
Identities = 9/73 (12%), Positives = 19/73 (26%), Gaps = 20/73 (27%)
Query: 88 TCEITPYDSGPYLIAWFKDGRQIP----------GRTSSTSLVINPVGREDRGIYQCIAR 137
E++ W G+ + G+ L+++ G A
Sbjct: 26 EIELS---EPDVHGQWKLKGQPLAASPDCEIIEDGKKHI--LILHNCQLGMTGEVSFQAA 80
Query: 138 RSDGDVAQGSAEL 150
+ +A L
Sbjct: 81 N-----TKSAANL 88
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4
complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB:
3zyo_A* 3zyn_A* 2dl9_A
Length = 452
Score = 63.2 bits (154), Expect = 1e-11
Identities = 20/92 (21%), Positives = 33/92 (35%), Gaps = 14/92 (15%)
Query: 1 TPPILTYSFIEQTLQPGPAVSLKCIASGNPTPDIGWTLDGFELPTNNRFVIGQFVSGHGD 60
+ P + + + + G LKC P + W L + ++ S H
Sbjct: 351 SAPFIMDAPRDLNISEGRMAELKCRTP--PMSSVKWLLPNGTVLSHA--------SRHPR 400
Query: 61 VISHVN----ISHVTVEDGGEYACVAENRAGT 88
+ + SHV + D G Y C+ N AG
Sbjct: 401 ISVLNDGTLNFSHVLLSDTGVYTCMVTNVAGN 432
Score = 51.7 bits (124), Expect = 1e-07
Identities = 25/118 (21%), Positives = 41/118 (34%), Gaps = 19/118 (16%)
Query: 178 VAGYPIEEVHWEK---VPPKIESFAFPFDGLPEGARTRVICGVTHGDPPLTIRWLKDGKP 234
+ G + EV P I + EG + C P +++WL
Sbjct: 335 MRGRYLVEVDQASFQCSAPFIMDAP-RDLNISEGRMAELKC---RTPPMSSVKWLLPNGT 390
Query: 235 L------SPRFPVNVSDLDSFSSLLSINSVSAAHSGEYTCVASNTAAQARYSSKLQVK 286
+ PR V L+ + V + +G YTC+ +N A + S+ L V
Sbjct: 391 VLSHASRHPRISVLND------GTLNFSHVLLSDTGVYTCMVTNVAGNSNASAYLNVS 442
>1dr9_A B7-1 (CD80), T lymphocyte activation antigen; IG superfamily,
immune system; HET: NAG; 3.00A {Homo sapiens} SCOP:
b.1.1.1 b.1.1.3 PDB: 1i8l_A*
Length = 201
Score = 61.2 bits (148), Expect = 2e-11
Identities = 28/211 (13%), Positives = 63/211 (29%), Gaps = 59/211 (27%)
Query: 88 TCEITPYDSGPYLIAWFKDGRQI--------------PGRTSST-----SLVINPVGRED 128
++ + I W K+ + + RT S+VI + D
Sbjct: 17 GHNVSVEELAQTRIYWQKEKKMVLTMMSGDMNIWPEYKNRTIFDITNNLSIVILALRPSD 76
Query: 129 RGIYQCIARRSDGDVAQGSAELQLGGLPYVRLIPKVTAIDGEGLSIKCPVAGYPIEEVHW 188
G Y+C+ + + D + ++ +
Sbjct: 77 EGTYECVVLKYEKDAFKREHLAEV--------------------------------TLSV 104
Query: 189 EKVPPKIESFAFPFDGLPEGARTRVICGVTHGDPPLTIRWLKDGKPLSPRFPVNVSDLDS 248
+ P +P R+IC + G P + WL++G+ L+ D +
Sbjct: 105 KADFPTPSI---SDFEIPTSNIRRIICSTSGGFPEPHLSWLENGEELNAINTTVSQDPE- 160
Query: 249 FSSLLSINS---VSAAHSGEYTCVASNTAAQ 276
+ L +++S + + + C+ +
Sbjct: 161 -TELYAVSSKLDFNMTTNHSFMCLIKYGHLR 190
Score = 41.1 bits (96), Expect = 1e-04
Identities = 15/83 (18%), Positives = 27/83 (32%), Gaps = 4/83 (4%)
Query: 11 EQTLQPGPAVSLKCIASG-NPTPDIGWTLDGFELPTNNRFVIGQFVSGHGDVISHVNISH 69
+ + + C SG P P + W +G EL N V + V S ++
Sbjct: 115 DFEIPTSNIRRIICSTSGGFPEPHLSWLENGEELNAINTTVSQDPETELYAVSSKLD--- 171
Query: 70 VTVEDGGEYACVAENRAGTCEIT 92
+ + C+ + T
Sbjct: 172 FNMTTNHSFMCLIKYGHLRVNQT 194
Score = 26.9 bits (59), Expect = 6.8
Identities = 6/22 (27%), Positives = 7/22 (31%)
Query: 67 ISHVTVEDGGEYACVAENRAGT 88
I + D G Y CV
Sbjct: 69 ILALRPSDEGTYECVVLKYEKD 90
>3sbw_C Programmed cell death 1 ligand 1; PD-1, PD-L1, B7-H1, programmed
death-1 ligand 1, complex, costimulatory, immune system;
2.28A {Homo sapiens} PDB: 3fn3_A 3bis_A 3bik_A
Length = 222
Score = 61.6 bits (149), Expect = 2e-11
Identities = 29/229 (12%), Positives = 59/229 (25%), Gaps = 72/229 (31%)
Query: 88 TCEITPY---DSGPYLIAWFKDGRQIP-----------------GRTS---------STS 118
C+ D ++ W + + I R + +
Sbjct: 22 ECKFPVEKQLDLAALIVYWEMEDKNIIQFVHGEEDLKVQHSSYRQRARLLKDQLSLGNAA 81
Query: 119 LVINPVGREDRGIYQCIARRSDGDVAQGSAELQLGGLPYVRLIP-KVTAIDGEGLSIKCP 177
L I V +D G+Y+C+ S G +++ V + C
Sbjct: 82 LQITDVKLQDAGVYRCMI--SYGGADYKRITVKVNAPYNKINQRILVVDPVTSEHELTCQ 139
Query: 178 VAGYPIEEVHWEKVPPKIESFAFPFDGLPEGARTRVICGVTHGDPPLTIRWLKDGKPLSP 237
GYP EV W D + LS
Sbjct: 140 AEGYPKAEVIWTS---------------------------------------SDHQVLSG 160
Query: 238 R-FPVNVSDLDSFSSLLSINSVSAAHSGEYTCVASNTAAQARYSSKLQV 285
+ N + ++ S ++ + + C + ++++L +
Sbjct: 161 KTTTTNSKREEKLFNVTSTLRINTTTNEIFYCTFRRLDPEENHTAELVI 209
Score = 50.4 bits (120), Expect = 1e-07
Identities = 16/93 (17%), Positives = 23/93 (24%), Gaps = 4/93 (4%)
Query: 1 TPPILTYSFIEQTLQPGPAVSLKCIASGNPTPDIGWT-LDGFELPTNNRFVIGQFVSGHG 59
P I L C A G P ++ WT D L +
Sbjct: 115 APYNKINQRILVVDPVTSEHELTCQAEGYPKAEVIWTSSDHQVLSGKTTTTNSKREEKLF 174
Query: 60 DVISHVNISHVTVEDGGEYACVAENRAGTCEIT 92
+V S + I+ + C T
Sbjct: 175 NVTSTLRIN---TTTNEIFYCTFRRLDPEENHT 204
Score = 36.1 bits (83), Expect = 0.007
Identities = 36/201 (17%), Positives = 62/201 (30%), Gaps = 70/201 (34%)
Query: 20 VSLKCIASGNPTPD-----IGWT---------LDGFELPTN------NRFVIGQFVSGHG 59
++++C D + W + G E R + + G
Sbjct: 19 MTIECKFPVEKQLDLAALIVYWEMEDKNIIQFVHGEEDLKVQHSSYRQRARLLKDQLSLG 78
Query: 60 DVISHVNISHVTVEDGGEYACVAENR-AGTCEIT------------------PYDSGPYL 100
+ + I+ V ++D G Y C+ A IT P S L
Sbjct: 79 NAA--LQITDVKLQDAGVYRCMISYGGADYKRITVKVNAPYNKINQRILVVDPVTSEHEL 136
Query: 101 -----------IAWFK-DGRQIPGRTS-------------STSLVINPVGREDRGIYQCI 135
+ W D + + G+T+ +++L IN I+ C
Sbjct: 137 TCQAEGYPKAEVIWTSSDHQVLSGKTTTTNSKREEKLFNVTSTLRINT---TTNEIFYCT 193
Query: 136 ARRSDGDVAQGSAELQLGGLP 156
RR D + +AEL + LP
Sbjct: 194 FRRLDPEE-NHTAELVIPELP 213
>2e7b_A Obscurin; IG-like domain, structural genomics, NPPSFA, national
project on protein structural and functional analyses;
NMR {Homo sapiens} PDB: 2yz8_A
Length = 103
Score = 58.5 bits (142), Expect = 2e-11
Identities = 16/91 (17%), Positives = 39/91 (42%), Gaps = 6/91 (6%)
Query: 2 PPILTYSFIEQTLQPGPAVSLKCIASGNPTPDIGWTLDGFELPTNNRFVIGQFVSGHGDV 61
P + + + G A +L+C+ S P + W L +++ + Q G +
Sbjct: 8 PVRFQEALKDLEVLEGGAATLRCVLSSVAAP-VKWCYGNNVLRPGDKYSLRQ----EGAM 62
Query: 62 ISHVNISHVTVEDGGEYACVAENRAGTCEIT 92
+ + + ++ +D G Y+C ++ + +T
Sbjct: 63 LE-LVVRNLRPQDSGRYSCSFGDQTTSATLT 92
Score = 51.9 bits (125), Expect = 5e-09
Identities = 11/75 (14%), Positives = 25/75 (33%), Gaps = 7/75 (9%)
Query: 206 PEGARTRVICGVTHGDPPLTIRWLKDGKPL--SPRFPVNVSDLDSFSSLLSINSVSAAHS 263
EG + C ++ ++W L ++ + + L + ++ S
Sbjct: 21 LEGGAATLRCVLS--SVAAPVKWCYGNNVLRPGDKYSLRQ---EGAMLELVVRNLRPQDS 75
Query: 264 GEYTCVASNTAAQAR 278
G Y+C + A
Sbjct: 76 GRYSCSFGDQTTSAT 90
Score = 41.9 bits (99), Expect = 2e-05
Identities = 17/79 (21%), Positives = 25/79 (31%), Gaps = 20/79 (25%)
Query: 88 TCEITPYDSGPYLIAWFKDGRQIP----------GRTSSTSLVINPVGREDRGIYQCIAR 137
C ++ S + W + G LV+ + +D G Y C
Sbjct: 29 RCVLS---SVAAPVKWCYGNNVLRPGDKYSLRQEGAMLE--LVVRNLRPQDSGRYSCSF- 82
Query: 138 RSDGDVAQGSAELQLGGLP 156
GD SA L + LP
Sbjct: 83 ---GD-QTTSATLTVTALP 97
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse;
HET: NAG BMA MAN; 3.25A {Homo sapiens}
Length = 440
Score = 62.8 bits (153), Expect = 2e-11
Identities = 22/88 (25%), Positives = 36/88 (40%), Gaps = 5/88 (5%)
Query: 1 TPPILTYSFIEQTLQPGPAVSLKCIASGNPTPDIGWTLDGFELPTNNRFVIGQFVSGHGD 60
P++ + + G A LKC AS + W + T+ + + V G
Sbjct: 340 YAPVIVEPPADLNVTEGMAAELKCRAST-SLTSVSWITPNGTVMTHGAYKVRIAVLSDGT 398
Query: 61 VISHVNISHVTVEDGGEYACVAENRAGT 88
+ N ++VTV+D G Y C+ N G
Sbjct: 399 L----NFTNVTVQDTGMYTCMVSNSVGN 422
Score = 52.1 bits (125), Expect = 8e-08
Identities = 18/87 (20%), Positives = 33/87 (37%), Gaps = 14/87 (16%)
Query: 205 LPEGARTRVICGVTHGDPPLTIRWLK-DGKPLS-----PRFPVNVSDLDSFSSLLSINSV 258
+ EG + C ++ W+ +G ++ R V L+ +V
Sbjct: 353 VTEGMAAELKCRA--STSLTSVSWITPNGTVMTHGAYKVRIAVLSD------GTLNFTNV 404
Query: 259 SAAHSGEYTCVASNTAAQARYSSKLQV 285
+ +G YTC+ SN+ S+ L V
Sbjct: 405 TVQDTGMYTCMVSNSVGNTTASATLNV 431
>2cpc_A KIAA0657 protein; immunoglobulin domain, IG domain, structural
genomics, NPPSFA, national project on protein
structural and functional analyses; NMR {Homo sapiens}
Length = 113
Score = 58.6 bits (142), Expect = 2e-11
Identities = 18/92 (19%), Positives = 37/92 (40%), Gaps = 6/92 (6%)
Query: 1 TPPILTYSFIEQTLQPGPAVSLKCIASGNPTPDIGWTLDGFELPTNNRFVIGQFVSGHGD 60
+ + + V L C P ++ WT DG E+ + ++ + D
Sbjct: 12 SWIVYPSGKVYVAAVRLERVVLTCELC-RPWAEVRWTKDGEEVVESPALLLQK-----ED 65
Query: 61 VISHVNISHVTVEDGGEYACVAENRAGTCEIT 92
+ + + V +ED GEY C ++ + + +T
Sbjct: 66 TVRRLVLPAVQLEDSGEYLCEIDDESASFTVT 97
Score = 55.2 bits (133), Expect = 4e-10
Identities = 20/91 (21%), Positives = 32/91 (35%), Gaps = 8/91 (8%)
Query: 191 VPPKIESFAFPFD-GLPEGARTRVICGVTHGDPPLTIRWLKDGKPL--SPRFPVNVSDLD 247
V I + R + C + P +RW KDG+ + SP + +
Sbjct: 10 VSSWIVYPSGKVYVAAVRLERVVLTCEL--CRPWAEVRWTKDGEEVVESPALLLQK---E 64
Query: 248 SFSSLLSINSVSAAHSGEYTCVASNTAAQAR 278
L + +V SGEY C + +A
Sbjct: 65 DTVRRLVLPAVQLEDSGEYLCEIDDESASFT 95
Score = 40.5 bits (95), Expect = 7e-05
Identities = 18/71 (25%), Positives = 26/71 (36%), Gaps = 14/71 (19%)
Query: 101 IAWFKDGRQIP--------GRTSSTSLVINPVGREDRGIYQCIARRSDGDVAQGSAELQL 152
+ W KDG ++ + LV+ V ED G Y C D S + +
Sbjct: 44 VRWTKDGEEVVESPALLLQKEDTVRRLVLPAVQLEDSGEYLCEI----DD-ESASFTVTV 98
Query: 153 GGLPYVRLIPK 163
P VR+I
Sbjct: 99 TEPP-VRIIYS 108
>3bp6_B Programmed cell death 1 ligand 2; PD-1, PD-L2, complex,
costimulation, glycoprotein, immunoglo domain, membrane,
transmembrane, receptor; 1.60A {Mus musculus} PDB:
3bp5_B 3rnq_B 3bov_A 3rnk_B
Length = 202
Score = 60.8 bits (147), Expect = 3e-11
Identities = 22/215 (10%), Positives = 45/215 (20%), Gaps = 63/215 (29%)
Query: 88 TCEITPYDSGPYLIAWFKDGRQIP--------GRTS---------STSLVINPVGREDRG 130
C+ + + Q R + I V D G
Sbjct: 23 ECDFDR--RECTELEGIRASLQKVENDTSLQSERATLLEEQLPLGKALFHIPSVQVRDSG 80
Query: 131 IYQCIARRSDGDVAQGSAELQLGGLPYVRLIPKVTAIDGEGLSIKCPVAGYPIEEVHWEK 190
Y+C+ +++ + + + C GYP
Sbjct: 81 QYRCLVICGAA-WDYKYLTVKVKASYMRIDTRILEVPGTGEVQLTCQARGYP-------- 131
Query: 191 VPPKIESFAFPFDGLPEGARTRVICGVTHGDPPLTIRWLKDGKPLSPRFPVNVSDLDSFS 250
+ W P + L +
Sbjct: 132 -LA-------------------------------EVSWQNVSVPANTSHIRTPEGLYQVT 159
Query: 251 SLLSINSVSAAHSGEYTCVASNTAAQARYSSKLQV 285
S+L + S ++C+ N + S+ +
Sbjct: 160 SVLRLKPQP---SRNFSCMFWNAHMKELTSAIIDP 191
Score = 45.0 bits (106), Expect = 6e-06
Identities = 13/68 (19%), Positives = 24/68 (35%), Gaps = 7/68 (10%)
Query: 20 VSLKCIASGNPTPDIGWTLDGFELPTNNRFVIGQFVSGHGDVISHVNISHVTVEDGGEYA 79
V L C A G P ++ W T++ + G V S + + + ++
Sbjct: 121 VQLTCQARGYPLAEVSWQNVSVPANTSHI----RTPEGLYQVTSVLRLK---PQPSRNFS 173
Query: 80 CVAENRAG 87
C+ N
Sbjct: 174 CMFWNAHM 181
>2eo1_A OBSCN protein, cDNA FLJ14124 FIS, clone mamma1002498;
beta-sandwich, IG-fold, structural genomics, NPPSFA;
NMR {Homo sapiens}
Length = 102
Score = 58.2 bits (141), Expect = 3e-11
Identities = 13/92 (14%), Positives = 33/92 (35%), Gaps = 6/92 (6%)
Query: 1 TPPILTYSFIEQTLQPGPAVSLKCIASGNPTPDIGWTLDGFELPTNNRFVIGQFVSGHGD 60
+ E + G + +L C + ++ W DG +L ++++ +
Sbjct: 10 VFAKEQPAHREVQAEAGASATLSCEVA-QAQTEVTWYKDGKKLSSSSKVRVEA-----VG 63
Query: 61 VISHVNISHVTVEDGGEYACVAENRAGTCEIT 92
+ + + GEY+C A + + +
Sbjct: 64 CTRRLVVQQAGQAEAGEYSCEAGGQQLSFRLQ 95
Score = 57.8 bits (140), Expect = 4e-11
Identities = 23/80 (28%), Positives = 30/80 (37%), Gaps = 7/80 (8%)
Query: 207 EGARTRVICGVTHGDPPLTIRWLKDGKPLSPRFPVNVSDLDSFSSLLSINSVSAAHSGEY 266
GA + C V + W KDGK LS V V + L + A +GEY
Sbjct: 25 AGASATLSCEVAQ--AQTEVTWYKDGKKLSSSSKVRVEA-VGCTRRLVVQQAGQAEAGEY 81
Query: 267 TCVASNTAAQARYSSKLQVK 286
+C A +LQV
Sbjct: 82 SCEAGGQQLSF----RLQVA 97
Score = 40.9 bits (96), Expect = 4e-05
Identities = 20/80 (25%), Positives = 32/80 (40%), Gaps = 20/80 (25%)
Query: 88 TCEITPYDSGPYLIAWFKDGRQIP----------GRTSSTSLVINPVGREDRGIYQCIAR 137
+CE+ + W+KDG+++ G T LV+ G+ + G Y C A
Sbjct: 32 SCEVA---QAQTEVTWYKDGKKLSSSSKVRVEAVGCTRR--LVVQQAGQAEAGEYSCEAG 86
Query: 138 RSDGDVAQGSAELQLGGLPY 157
Q S LQ+ G +
Sbjct: 87 G-----QQLSFRLQVAGQCF 101
>3so5_A LIG-3, leucine-rich repeats and immunoglobulin-like DOMA protein 3;
structural genomics, joint center for struct genomics,
JCSG; HET: MLY MSE; 1.70A {Mus musculus}
Length = 112
Score = 58.2 bits (140), Expect = 3e-11
Identities = 19/91 (20%), Positives = 33/91 (36%), Gaps = 5/91 (5%)
Query: 3 PILTYSFIEQTLQPGPAVSLKCIASGNPTPDI--GWTLDGFELPTNNRFVIGQFVSGHGD 60
P +T Q+ G VS C A+ + + W D L + G+
Sbjct: 11 PQITVQPETQSAIXGSDVSFTCSAASSSDSPMTFAWXXDNEALQDAEMENYAHLRAQGGE 70
Query: 61 VI---SHVNISHVTVEDGGEYACVAENRAGT 88
++ + + + +V G Y CV N G+
Sbjct: 71 LMEYTTILRLRNVEFTSEGXYQCVISNHFGS 101
Score = 48.1 bits (114), Expect = 1e-07
Identities = 17/75 (22%), Positives = 27/75 (36%), Gaps = 8/75 (10%)
Query: 208 GARTRVICGVT-HGDPPLTIRWLKDGKPLSP-------RFPVNVSDLDSFSSLLSINSVS 259
G+ C D P+T W D + L +L ++++L + +V
Sbjct: 25 GSDVSFTCSAASSSDSPMTFAWXXDNEALQDAEMENYAHLRAQGGELMEYTTILRLRNVE 84
Query: 260 AAHSGEYTCVASNTA 274
G Y CV SN
Sbjct: 85 FTSEGXYQCVISNHF 99
>2dlt_A Myosin binding protein C, fast-type; IG-like domain, mybpc2,
structural genomics, NPPSFA; NMR {Mus musculus}
Length = 106
Score = 58.2 bits (141), Expect = 3e-11
Identities = 19/83 (22%), Positives = 30/83 (36%), Gaps = 9/83 (10%)
Query: 206 PEGARTRVICGVTHGDPPLTIRWLKDGKPL--SPRFPVNVSDLDSFSSLLSINSVSAAHS 263
+ C V+ +T +W K+G + S R ++ L I+ V
Sbjct: 21 KAAEQAVFKCEVSD--EKVTGKWYKNGVEVRPSKRITISH---VGRFHKLVIDDVRPEDE 75
Query: 264 GEYTCVASNTAAQARYSSKLQVK 286
G+YT V A S+KL
Sbjct: 76 GDYTFVPDGYALSL--SAKLNFL 96
Score = 57.8 bits (140), Expect = 5e-11
Identities = 18/79 (22%), Positives = 27/79 (34%), Gaps = 6/79 (7%)
Query: 12 QTLQPGPAVSLKCIASGNPTPDIGWTLDGFELPTNNRFVIGQFVSGHGDVISHVNISHVT 71
T++ KC S W +G E+ + R I H + I V
Sbjct: 18 LTVKAAEQAVFKCEVSD-EKVTGKWYKNGVEVRPSKRITIS-----HVGRFHKLVIDDVR 71
Query: 72 VEDGGEYACVAENRAGTCE 90
ED G+Y V + A +
Sbjct: 72 PEDEGDYTFVPDGYALSLS 90
Score = 40.8 bits (96), Expect = 5e-05
Identities = 20/82 (24%), Positives = 30/82 (36%), Gaps = 18/82 (21%)
Query: 88 TCEITPYDSGPYLIAWFKDGRQIP----------GRTSSTSLVINPVGREDRGIYQCIAR 137
CE++ W+K+G ++ GR LVI+ V ED G Y +
Sbjct: 29 KCEVS---DEKVTGKWYKNGVEVRPSKRITISHVGRFHK--LVIDDVRPEDEGDYTFVP- 82
Query: 138 RSDGDVAQGSAELQLGGLPYVR 159
DG SA+L +
Sbjct: 83 --DGYALSLSAKLNFLEIKVSG 102
>2e6p_A Obscurin-like protein 1; IG-like domain, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 104
Score = 57.8 bits (140), Expect = 4e-11
Identities = 16/81 (19%), Positives = 26/81 (32%), Gaps = 6/81 (7%)
Query: 12 QTLQPGPAVSLKCIASGNPTPDIGWTLDGFELPTNNRFVIGQFVSGHGDVISHVNISHVT 71
T V L C S W DG ++ + V+ + +
Sbjct: 20 LTFTTSERVVLTCELSR-VDFPATWYKDGQKVEESELLVVKM-----DGRKHRLILPEAK 73
Query: 72 VEDGGEYACVAENRAGTCEIT 92
V+D GE+ C E + +T
Sbjct: 74 VQDSGEFECRTEGVSAFFGVT 94
Score = 57.4 bits (139), Expect = 5e-11
Identities = 15/72 (20%), Positives = 25/72 (34%), Gaps = 3/72 (4%)
Query: 207 EGARTRVICGVTHGDPPLTIRWLKDGKPLSPRFPVNVSDLDSFSSLLSINSVSAAHSGEY 266
R + C ++ D P W KDG+ + + V L+ + SGE+
Sbjct: 24 TSERVVLTCELSRVDFP--ATWYKDGQKVEESELLVVKMDGRKHRLI-LPEAKVQDSGEF 80
Query: 267 TCVASNTAAQAR 278
C +A
Sbjct: 81 ECRTEGVSAFFG 92
Score = 40.8 bits (96), Expect = 4e-05
Identities = 13/73 (17%), Positives = 26/73 (35%), Gaps = 20/73 (27%)
Query: 88 TCEITPYDSGPYLIAWFKDGRQIP----------GRTSSTSLVINPVGREDRGIYQCIAR 137
TCE++ + W+KDG+++ GR L++ +D G ++C
Sbjct: 31 TCELS---RVDFPATWYKDGQKVEESELLVVKMDGRKHR--LILPEAKVQDSGEFECRTE 85
Query: 138 RSDGDVAQGSAEL 150
+
Sbjct: 86 G-----VSAFFGV 93
>1hng_A CD2; T lymphocyte adhesion glycoprotein; 2.80A {Rattus rattus}
SCOP: b.1.1.1 b.1.1.3
Length = 176
Score = 59.2 bits (143), Expect = 6e-11
Identities = 24/200 (12%), Positives = 49/200 (24%), Gaps = 70/200 (35%)
Query: 101 IAWFKDGRQIP------------GR---TSSTSLVINPVGREDRGIYQCIARRSDGDVAQ 145
+ W + + G ++ L I + R+D G Y ++G
Sbjct: 30 VRWERGSTLVAEFKRKMKPFLKSGAFEILANGDLKIKNLTRDDSGTYNVTVYSTNGTRIL 89
Query: 146 GSAELQLGGLPYVRLIPKVTAIDGEGLSIKCPVAGYPIEEVHWEKVPPKIESFAFPFDGL 205
+ L L R++ V+ P I
Sbjct: 90 -NKALDL------RILEMVS--------------------------KPMIYW-------- 108
Query: 206 PEGARTRVICGVTHGDPPLTIRWLKDGKPLSPRFPVNVSDLDSFSSLLSINSVSAAHSGE 265
E + + C V G ++ + + L +++
Sbjct: 109 -ECSNATLTCEVLEGTDV-ELKLYQGKEHLRS------------LRQKTMSYQWTNLRAP 154
Query: 266 YTCVASNTAAQARYSSKLQV 285
+ C A N +Q +
Sbjct: 155 FKCKAVNRVSQESEMEVVNC 174
Score = 51.9 bits (124), Expect = 2e-08
Identities = 17/149 (11%), Positives = 44/149 (29%), Gaps = 37/149 (24%)
Query: 21 SLKCIASGNPTPDIGWTLDGFELPTNNRFVIGQFVSGHGDVISHVN--ISHVTVEDGGEY 78
++ + ++ W + R + SG +++++ + I ++T +D G Y
Sbjct: 17 NIPNFQMTDDIDEVRWERGSTLVAEFKRKMKPFLKSGAFEILANGDLKIKNLTRDDSGTY 76
Query: 79 ACVAENRAG------------------------------TCEITPYDSGPYLIAWFKDGR 108
+ G TCE+ + + ++
Sbjct: 77 NVTVYSTNGTRILNKALDLRILEMVSKPMIYWECSNATLTCEVL--EGTDVELKLYQGKE 134
Query: 109 QIPGRTSSTSLVINPVGREDRGIYQCIAR 137
+ S ++ R ++C A
Sbjct: 135 HLR---SLRQKTMSYQWTNLRAPFKCKAV 160
Score = 41.1 bits (96), Expect = 1e-04
Identities = 12/79 (15%), Positives = 25/79 (31%), Gaps = 6/79 (7%)
Query: 214 ICGVTHGDPPLTIRWLKDGKPL------SPRFPVNVSDLDSFSSLLSINSVSAAHSGEYT 267
I D +RW + + F + + + L I +++ SG Y
Sbjct: 18 IPNFQMTDDIDEVRWERGSTLVAEFKRKMKPFLKSGAFEILANGDLKIKNLTRDDSGTYN 77
Query: 268 CVASNTAAQARYSSKLQVK 286
+T + L ++
Sbjct: 78 VTVYSTNGTRILNKALDLR 96
Score = 40.7 bits (95), Expect = 1e-04
Identities = 8/68 (11%), Positives = 16/68 (23%), Gaps = 16/68 (23%)
Query: 20 VSLKCIASGNPTPDIGWTLDGFELPTNNRFVIGQFVSGHGDVISHVNISHVTVEDGGEYA 79
+L C ++ L + + +S+ +
Sbjct: 113 ATLTCEVLEGTDVELKLYQGKEHLRSLRQKT----------------MSYQWTNLRAPFK 156
Query: 80 CVAENRAG 87
C A NR
Sbjct: 157 CKAVNRVS 164
>2yuv_A Myosin-binding protein C, SLOW-type; SLOW-type myosin-binding
protein C, immunoglobulin domain, structural genomics,
NPPSFA; NMR {Homo sapiens} PDB: 2yxm_A
Length = 100
Score = 56.6 bits (137), Expect = 1e-10
Identities = 16/73 (21%), Positives = 26/73 (35%), Gaps = 3/73 (4%)
Query: 206 PEGARTRVICGVTHGDPPLTIRWLKDGKPLSPRFPVNVSDLDSFSSLLSINSVSAAHSGE 265
+G R R + + DP L ++W K+G+ + P L IN+ E
Sbjct: 21 DKGGRVRFVVEL--ADPKLEVKWYKNGQEIRPSTKYIFEHKGCQRILF-INNCQMTDDSE 77
Query: 266 YTCVASNTAAQAR 278
Y A +
Sbjct: 78 YYVTAGDEKCSTE 90
Score = 54.7 bits (132), Expect = 5e-10
Identities = 12/82 (14%), Positives = 30/82 (36%), Gaps = 6/82 (7%)
Query: 11 EQTLQPGPAVSLKCIASGNPTPDIGWTLDGFELPTNNRFVIGQFVSGHGDVISHVNISHV 70
+ G V + +P ++ W +G E+ + +++ + I++
Sbjct: 17 AYQVDKGGRVRFVVELA-DPKLEVKWYKNGQEIRPSTKYIFEH-----KGCQRILFINNC 70
Query: 71 TVEDGGEYACVAENRAGTCEIT 92
+ D EY A + + E+
Sbjct: 71 QMTDDSEYYVTAGDEKCSTELF 92
Score = 39.3 bits (92), Expect = 1e-04
Identities = 19/78 (24%), Positives = 29/78 (37%), Gaps = 18/78 (23%)
Query: 88 TCEITPYDSGPYL-IAWFKDGRQIPG--------RTSSTSLVINPVGREDRGIYQCIARR 138
E+ + P L + W+K+G++I + L IN D Y A
Sbjct: 29 VVEL----ADPKLEVKWYKNGQEIRPSTKYIFEHKGCQRILFINNCQMTDDSEYYVTA-- 82
Query: 139 SDGDVAQGSAELQLGGLP 156
GD + S EL + P
Sbjct: 83 --GD-EKCSTELFVRSGP 97
>3s35_X Vascular endothelial growth factor receptor 2; antibody, KDR,
VEGF receptor, cancer, immune system-transfer complex;
HET: NAG; 2.20A {Homo sapiens} PDB: 3s36_X 3s37_X
Length = 122
Score = 57.1 bits (137), Expect = 1e-10
Identities = 21/81 (25%), Positives = 27/81 (33%), Gaps = 5/81 (6%)
Query: 13 TLQPGPAVSLKCIASGNPTPDIG--WTLDGFELPTN---NRFVIGQFVSGHGDVISHVNI 67
L G + L C A I W + NR + Q S +S + I
Sbjct: 19 ELSVGEKLVLNCTARTELNVGIDFNWEYPSSKHQHKKLVNRDLKTQSGSEMKKFLSTLTI 78
Query: 68 SHVTVEDGGEYACVAENRAGT 88
VT D G Y C A + T
Sbjct: 79 DGVTRSDQGLYTCAASSGLMT 99
Score = 53.6 bits (128), Expect = 2e-09
Identities = 19/90 (21%), Positives = 33/90 (36%), Gaps = 8/90 (8%)
Query: 205 LPEGARTRVICGVTHG-DPPLTIRWLKDGKPLSPRFPVNVSDLDS-------FSSLLSIN 256
L G + + C + + W + VN F S L+I+
Sbjct: 20 LSVGEKLVLNCTARTELNVGIDFNWEYPSSKHQHKKLVNRDLKTQSGSEMKKFLSTLTID 79
Query: 257 SVSAAHSGEYTCVASNTAAQARYSSKLQVK 286
V+ + G YTC AS+ + S+ ++V
Sbjct: 80 GVTRSDQGLYTCAASSGLMTKKNSTFVRVH 109
Score = 37.0 bits (85), Expect = 0.001
Identities = 14/93 (15%), Positives = 28/93 (30%), Gaps = 17/93 (18%)
Query: 88 TCEITPYDSGPYLIAWFKDGRQIP----------------GRTSSTSLVINPVGREDRGI 131
C + W + + ++L I+ V R D+G+
Sbjct: 29 NCTARTELNVGIDFNWEYPSSKHQHKKLVNRDLKTQSGSEMKKFLSTLTIDGVTRSDQGL 88
Query: 132 YQCIARRSDGDVAQGSAELQLGGLPYVRLIPKV 164
Y C A + S +++ P+V +
Sbjct: 89 YTCAASSGLM-TKKNSTFVRVHEKPFVAFGSGM 120
>1x44_A Myosin-binding protein C, SLOW-type; IG-like domain, SLOW-
type/skeletal muscle SLOW-isoform, structural genomics,
NPPSFA; NMR {Homo sapiens} SCOP: b.1.1.4
Length = 103
Score = 56.2 bits (136), Expect = 2e-10
Identities = 14/73 (19%), Positives = 31/73 (42%), Gaps = 3/73 (4%)
Query: 207 EGARTRVICGVTHGDPPLTIRWLKDGKPLSPRFPVNVS-DLDSFSSLLSINSVSAAHSGE 265
G R + C V+ ++W K+G+ + P ++ +L I + A + E
Sbjct: 21 CGERVELECEVSE--DDANVKWFKNGEEIIPGPKSRYRIRVEGKKHILIIEGATKADAAE 78
Query: 266 YTCVASNTAAQAR 278
Y+ + + + A+
Sbjct: 79 YSVMTTGGQSSAK 91
Score = 53.5 bits (129), Expect = 1e-09
Identities = 16/81 (19%), Positives = 29/81 (35%), Gaps = 4/81 (4%)
Query: 12 QTLQPGPAVSLKCIASGNPTPDIGWTLDGFELPTNNRFVIGQFVSGHGDVISHVNISHVT 71
T G V L+C S ++ W +G E+ + V G + I T
Sbjct: 17 TTAYCGERVELECEVS-EDDANVKWFKNGEEIIPGPKSRYRIRVEGK---KHILIIEGAT 72
Query: 72 VEDGGEYACVAENRAGTCEIT 92
D EY+ + + +++
Sbjct: 73 KADAAEYSVMTTGGQSSAKLS 93
Score = 41.5 bits (98), Expect = 2e-05
Identities = 16/73 (21%), Positives = 25/73 (34%), Gaps = 18/73 (24%)
Query: 88 TCEITPYDSGPYLIAWFKDGRQIPGRTSS----------TSLVINPVGREDRGIYQCIAR 137
CE++ + WFK+G +I S L+I + D Y +
Sbjct: 28 ECEVS---EDDANVKWFKNGEEIIPGPKSRYRIRVEGKKHILIIEGATKADAAEYSVMT- 83
Query: 138 RSDGDVAQGSAEL 150
Q SA+L
Sbjct: 84 ---TG-GQSSAKL 92
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein,
neurite growth regulation; HET: NAG BMA; 2.00A {Mus
musculus}
Length = 361
Score = 59.9 bits (145), Expect = 2e-10
Identities = 12/82 (14%), Positives = 25/82 (30%), Gaps = 6/82 (7%)
Query: 11 EQTLQPGPAVSLKCIASGNPTPDIGWTLDGFELPTNNRFVIGQFVSGHGDVISHVNISHV 70
G ++++C + + ++ + +G + V
Sbjct: 255 AWEAHLGDTLTIRCDTKQQGMTKVWVSPSNEQVLSQGSNGSVSVRNGD------LFFKKV 308
Query: 71 TVEDGGEYACVAENRAGTCEIT 92
VEDGG Y C A ++
Sbjct: 309 QVEDGGVYTCYAMGETFNETLS 330
Score = 52.5 bits (126), Expect = 5e-08
Identities = 12/80 (15%), Positives = 21/80 (26%), Gaps = 3/80 (3%)
Query: 206 PEGARTRVICGVTHGDPPLTIRWLKDGKPLSPRFPVNVSDLDSFSSLLSINSVSAAHSGE 265
G + C + + + + + + L V G
Sbjct: 259 HLGDTLTIRCDTK-QQGMTKVWVSPSNEQVLS--QGSNGSVSVRNGDLFFKKVQVEDGGV 315
Query: 266 YTCVASNTAAQARYSSKLQV 285
YTC A S +L+V
Sbjct: 316 YTCYAMGETFNETLSVELKV 335
>2yuz_A Myosin-binding protein C, SLOW-type; immunoglobulin domain,
SLOW-type myosin-binding protein C, structural
genomics, NPPSFA; NMR {Homo sapiens}
Length = 100
Score = 55.8 bits (135), Expect = 2e-10
Identities = 20/78 (25%), Positives = 32/78 (41%), Gaps = 7/78 (8%)
Query: 12 QTLQPGPAVSLKCIASGNPTPDIGWTLDGFELPTNNRFVIGQFVSGHGDVISHVNISHVT 71
QT+ G + LKC S N WT +G + ++R + Q I + I++
Sbjct: 17 QTVNLGKEICLKCEISENIPGK--WTKNGLPVQESDRLKVVQ-----KGRIHKLVIANAL 69
Query: 72 VEDGGEYACVAENRAGTC 89
ED G+Y + T
Sbjct: 70 TEDEGDYVFAPDAYNVTL 87
Score = 53.9 bits (130), Expect = 1e-09
Identities = 16/83 (19%), Positives = 27/83 (32%), Gaps = 10/83 (12%)
Query: 206 PEGARTRVICGVTHGDPPLTIRWLKDGKPL--SPRFPVNVSDLDSFSSLLSINSVSAAHS 263
G + C ++ + P +W K+G P+ S R V L I +
Sbjct: 20 NLGKEICLKCEIS-ENIP--GKWTKNGLPVQESDRLKVVQKGRIHK---LVIANALTEDE 73
Query: 264 GEYTCVASNTAAQARYSSKLQVK 286
G+Y +K+ V
Sbjct: 74 GDYVFAPDAYNVTL--PAKVHVI 94
Score = 43.5 bits (103), Expect = 5e-06
Identities = 19/79 (24%), Positives = 24/79 (30%), Gaps = 19/79 (24%)
Query: 88 TCEITPYDSGPYLIAWFKDGRQIP----------GRTSSTSLVINPVGREDRGIYQCIAR 137
CEI S W K+G + GR LVI ED G Y
Sbjct: 28 KCEI----SENIPGKWTKNGLPVQESDRLKVVQKGRIHK--LVIANALTEDEGDYVFAP- 80
Query: 138 RSDGDVAQGSAELQLGGLP 156
D A++ + P
Sbjct: 81 --DAYNVTLPAKVHVISGP 97
>2k1m_A Myosin-binding protein C, cardiac-type; IG-I domain, cardiac
muscle, hypertrophic cardiomyopathy, actin-binding,
cell adhesion, disease mutation; NMR {Homo sapiens}
Length = 95
Score = 55.4 bits (134), Expect = 3e-10
Identities = 11/91 (12%), Positives = 29/91 (31%), Gaps = 6/91 (6%)
Query: 2 PPILTYSFIEQTLQPGPAVSLKCIASGNPTPDIGWTLDGFELPTNNRFVIGQFVSGHGDV 61
+ + G + + W G ++ +N++ + + G
Sbjct: 8 VSAFSKKPRSVEVAAGSPAVFEAETER-AGVKVRWQRGGSDISASNKYGL----ATEGTR 62
Query: 62 ISHVNISHVTVEDGGEYACVAENRAGTCEIT 92
+ + + V D G YA +A + ++
Sbjct: 63 HT-LTVREVGPADQGSYAVIAGSSKVKFDLK 92
Score = 55.0 bits (133), Expect = 3e-10
Identities = 13/83 (15%), Positives = 29/83 (34%), Gaps = 11/83 (13%)
Query: 206 PEGARTRVICGVTHGDPPLTIRWLKDGKPL--SPRFPVNVSDLDSFSSLLSINSVSAAHS 263
G+ + +RW + G + S ++ + + L++ V A
Sbjct: 21 AAGSPAVFEAETER--AGVKVRWQRGGSDISASNKYGLAT---EGTRHTLTVREVGPADQ 75
Query: 264 GEYTCVASNTAAQARYSSKLQVK 286
G Y +A ++ + L+V
Sbjct: 76 GSYAVIAGSSKVKFD----LKVI 94
Score = 43.9 bits (104), Expect = 3e-06
Identities = 14/73 (19%), Positives = 22/73 (30%), Gaps = 20/73 (27%)
Query: 88 TCEITPYDSGPYLIAWFKDGRQIP----------GRTSSTSLVINPVGREDRGIYQCIAR 137
E + W + G I G + L + VG D+G Y IA
Sbjct: 29 EAETE---RAGVKVRWQRGGSDISASNKYGLATEGTRHT--LTVREVGPADQGSYAVIAG 83
Query: 138 RSDGDVAQGSAEL 150
++ +L
Sbjct: 84 S-----SKVKFDL 91
>2dm7_A KIAA1556 protein; beta-sandwich, IG-fold, obscurin, structural
genomics, NPPSFA, national project on protein
structural and functional analyses; NMR {Homo sapiens}
PDB: 2edl_A 2edw_A 2gqh_A 2edt_A 2edq_A 2edr_A
Length = 108
Score = 55.1 bits (133), Expect = 4e-10
Identities = 19/92 (20%), Positives = 31/92 (33%), Gaps = 9/92 (9%)
Query: 2 PPILTYSFIEQTLQPGPAVSLKCIASGNPTPDIGWTLDGFELPTNNRFVIGQFVSGHGDV 61
P T + G +L+C S + W L R+ + Q D
Sbjct: 8 PARFTQDLKTKEASEGATATLQCELS--KVAPVEWKKGPETLRDGGRYSLKQ------DG 59
Query: 62 ISHV-NISHVTVEDGGEYACVAENRAGTCEIT 92
I ++V D GEY+C+ + +T
Sbjct: 60 TRCELQIHDLSVADAGEYSCMCGQERTSATLT 91
Score = 52.4 bits (126), Expect = 3e-09
Identities = 18/75 (24%), Positives = 30/75 (40%), Gaps = 8/75 (10%)
Query: 206 PEGARTRVICGVTHGDPPLTIRWLKDGKPL--SPRFPVNVSDLDSFSSLLSINSVSAAHS 263
EGA + C ++ + W K + L R+ + D L I+ +S A +
Sbjct: 21 SEGATATLQCELS---KVAPVEWKKGPETLRDGGRYSLKQ---DGTRCELQIHDLSVADA 74
Query: 264 GEYTCVASNTAAQAR 278
GEY+C+ A
Sbjct: 75 GEYSCMCGQERTSAT 89
Score = 45.8 bits (109), Expect = 9e-07
Identities = 17/79 (21%), Positives = 26/79 (32%), Gaps = 21/79 (26%)
Query: 88 TCEITPYDSGPYLIAWFKDGRQIP----------GRTSSTSLVINPVGREDRGIYQCIAR 137
CE++ + W K + G L I+ + D G Y C+
Sbjct: 29 QCELSK----VAPVEWKKGPETLRDGGRYSLKQDGTRCE--LQIHDLSVADAGEYSCMC- 81
Query: 138 RSDGDVAQGSAELQLGGLP 156
G + SA L + LP
Sbjct: 82 ---GQ-ERTSATLTVRALP 96
>3eow_R Poliovirus receptor; immunoglobulin super family, alternative
splicing, cell adhesion, cell membrane, glycoprotein,
HOST-virus interaction; 3.50A {Homo sapiens} PDB: 3uro_R
3epc_R* 3epd_R* 3epf_R*
Length = 221
Score = 57.4 bits (138), Expect = 4e-10
Identities = 26/171 (15%), Positives = 43/171 (25%), Gaps = 42/171 (24%)
Query: 107 GRQIPGRTSSTSLVINPVGREDRGIYQCIARRSDGDVAQGSAELQLGGLPYVRLIP-KVT 165
++ SL + + ED G Y C+ L++ P KV
Sbjct: 68 AARLGAELRDASLRMFGLRVEDEGSYTCLFVTFPQGSRSVDIWLRVLAKPQNTAEVQKVQ 127
Query: 166 AIDGEGLSIKCPVAGYPIEEVHWEKVPPKIESFAFPFDGLPEGARTRVICGVTHGDPPLT 225
+C G G PP
Sbjct: 128 LTGEPVPMARCVSTG---------------------------------------GRPPAQ 148
Query: 226 IRWLKDGKPLSP--RFPVNVSDLDSFSSLLSINSVSAAHSGEYTCVASNTA 274
I W D + + P +S + +SL + S + TC + +
Sbjct: 149 ITWHSDLGGMPQTSQVPGFLSGTVTVTSLWILVPSSQVDGKQVTCKVEHES 199
Score = 44.7 bits (105), Expect = 1e-05
Identities = 20/92 (21%), Positives = 34/92 (36%), Gaps = 3/92 (3%)
Query: 2 PPILTYSFIEQTLQPGPAVSLKCIASG-NPTPDIGWTLDGFELPTNNRFVIGQFVSGHGD 60
P T + L P +C+++G P I W D +P ++ F+SG
Sbjct: 116 KPQNTAEVQKVQLTGEPVPMARCVSTGGRPPAQITWHSDLGGMPQTSQVP--GFLSGTVT 173
Query: 61 VISHVNISHVTVEDGGEYACVAENRAGTCEIT 92
V S + + DG + C E+ +
Sbjct: 174 VTSLWILVPSSQVDGKQVTCKVEHESFEKPQL 205
Score = 27.7 bits (61), Expect = 4.1
Identities = 14/134 (10%), Positives = 32/134 (23%), Gaps = 37/134 (27%)
Query: 162 PKVTAIDGEGLSIKCPVAGYP-----IEEVHWEKVPPKIESFAFPFDGLPEGARTRVICG 216
+V G+ +++ C + + ++ W +
Sbjct: 7 TQVPGFLGDSVTLPCYLQVPNMEVTHVSQLTWAR-------------------------- 40
Query: 217 VTHGDPPLTIRWLKDGKPLSPRFPVNVSDLDSFSSL----LSINSVSAAHSGEYTC-VAS 271
+ + G S + + L L + + G YTC +
Sbjct: 41 -HGESGSMAVFHQTQGPSYSESKRLEFVAARLGAELRDASLRMFGLRVEDEGSYTCLFVT 99
Query: 272 NTAAQARYSSKLQV 285
L+V
Sbjct: 100 FPQGSRSVDIWLRV 113
>2dku_A KIAA1556 protein; beta-sandwich, IG-fold, obscurin, structural
genomics, NPPSFA, national project on protein
structural and functional analyses; NMR {Homo sapiens}
Length = 103
Score = 54.6 bits (132), Expect = 5e-10
Identities = 13/91 (14%), Positives = 23/91 (25%), Gaps = 6/91 (6%)
Query: 2 PPILTYSFIEQTLQPGPAVSLKCIASGNPTPDIGWTLDGFELPTNNRFVIGQFVSGHGDV 61
T ++ C +P + W EL + + Q G
Sbjct: 8 ANCFTEELTNLQVEEKGTAVFTCKTE-HPAATVTWRKGLLELRASGKHQPSQ----EGLT 62
Query: 62 ISHVNISHVTVEDGGEYACVAENRAGTCEIT 92
+ IS + D Y C ++
Sbjct: 63 LRLT-ISALEKADSDTYTCDIGQAQSRAQLL 92
Score = 52.7 bits (127), Expect = 3e-09
Identities = 17/73 (23%), Positives = 27/73 (36%), Gaps = 3/73 (4%)
Query: 206 PEGARTRVICGVTHGDPPLTIRWLKDGKPLSPRFPVNVSDLDSFSSLLSINSVSAAHSGE 265
E C H P T+ W K L S + + L+I+++ A S
Sbjct: 21 EEKGTAVFTCKTEH--PAATVTWRKGLLELRASGKHQPSQ-EGLTLRLTISALEKADSDT 77
Query: 266 YTCVASNTAAQAR 278
YTC ++A+
Sbjct: 78 YTCDIGQAQSRAQ 90
Score = 40.4 bits (95), Expect = 5e-05
Identities = 15/66 (22%), Positives = 23/66 (34%), Gaps = 17/66 (25%)
Query: 101 IAWFKDGRQIP----------GRTSSTSLVINPVGREDRGIYQCIARRSDGDVAQGSAEL 150
+ W K ++ G T L I+ + + D Y C G AQ A+L
Sbjct: 39 VTWRKGLLELRASGKHQPSQEGLTLR--LTISALEKADSDTYTCDI----GQ-AQSRAQL 91
Query: 151 QLGGLP 156
+ G
Sbjct: 92 LVQGRR 97
>2edh_A Obscurin; structural genomics, NPPSFA, national project on P
structural and functional analyses, riken structural
genomics/proteomics initiative; NMR {Homo sapiens}
Length = 113
Score = 54.3 bits (131), Expect = 9e-10
Identities = 19/92 (20%), Positives = 29/92 (31%), Gaps = 7/92 (7%)
Query: 1 TPPILTYSFIEQTLQPGPAVSLKCIASGNPTPDIGWTLDGFELPTNNRFVIGQFVSGHGD 60
P T + G L+C S + W L +R + Q G
Sbjct: 18 LPIKFTEGLRNEEATEGATAVLRCELSKMAP--VEWWKGHETLRDGDRHSLRQ----DGA 71
Query: 61 VISHVNISHVTVEDGGEYACVAENRAGTCEIT 92
+ I + ED GEY C+ + +T
Sbjct: 72 RCE-LQIRGLVAEDAGEYLCMCGKERTSAMLT 102
Score = 51.2 bits (123), Expect = 1e-08
Identities = 18/74 (24%), Positives = 27/74 (36%), Gaps = 8/74 (10%)
Query: 207 EGARTRVICGVTHGDPPLTIRWLKDGKPL--SPRFPVNVSDLDSFSSLLSINSVSAAHSG 264
EGA + C ++ P + W K + L R + D L I + A +G
Sbjct: 33 EGATAVLRCELS-KMAP--VEWWKGHETLRDGDRHSLRQ---DGARCELQIRGLVAEDAG 86
Query: 265 EYTCVASNTAAQAR 278
EY C+ A
Sbjct: 87 EYLCMCGKERTSAM 100
Score = 43.9 bits (104), Expect = 5e-06
Identities = 17/79 (21%), Positives = 27/79 (34%), Gaps = 21/79 (26%)
Query: 88 TCEITPYDSGPYLIAWFKDGRQIP----------GRTSSTSLVINPVGREDRGIYQCIAR 137
CE+ S + W+K + G L I + ED G Y C+
Sbjct: 40 RCEL----SKMAPVEWWKGHETLRDGDRHSLRQDGARCE--LQIRGLVAEDAGEYLCMCG 93
Query: 138 RSDGDVAQGSAELQLGGLP 156
+ + SA L + +P
Sbjct: 94 K-----ERTSAMLTVRAMP 107
>3vh8_G Killer cell immunoglobulin-like receptor 3DL1; immunoglobulin fold,
natural killer cell receptor, immune SY; HET: NAG; 1.80A
{Homo sapiens} PDB: 1im9_D
Length = 316
Score = 56.0 bits (135), Expect = 3e-09
Identities = 30/182 (16%), Positives = 44/182 (24%), Gaps = 38/182 (20%)
Query: 103 WFKDGR----QIPGRTSSTSLVINPVGREDRGIYQCIARRSDGDVAQGSAELQLGGLPYV 158
+K+ R GR S ++PV G Y C
Sbjct: 56 LYKEDRIHIPIFHGRIFQESFNMSPVTTAHAGNYTCRG--------------------SH 95
Query: 159 RLIPKVTAIDGEGLSIKCPVAGYPIEEVHWEKVPPKIESFAFPFDGLPEGARTRVICGVT 218
P + + + K A P + G R + C
Sbjct: 96 PHSPTGWSAPSNPV------------VIMVTGNHRKPSLLAHPGPLVKSGERVILQCWSD 143
Query: 219 HGDPPLTIRWLKDGKPLSPRFPVNVSDLDSFSSLLSINSVSAAHSGEYTCVASNTAAQAR 278
K+G P V + SI + A +G Y C S T +
Sbjct: 144 IM--FEHFFLHKEGISKDPSRLVGQIHDGVSKANFSIGPMMLALAGTYRCYGSVTHTPYQ 201
Query: 279 YS 280
S
Sbjct: 202 LS 203
Score = 48.3 bits (115), Expect = 9e-07
Identities = 30/197 (15%), Positives = 46/197 (23%), Gaps = 49/197 (24%)
Query: 95 DSGPYLIAWFKDG---------RQIPGRTSSTSLVINPVGREDRGIYQCIARRSDGDVA- 144
D K+G QI S + I P+ G Y+C +
Sbjct: 143 DIMFEHFFLHKEGISKDPSRLVGQIHDGVSKANFSIGPMMLALAGTYRCYGSVTHTPYQL 202
Query: 145 -QGSAELQLGGLPYVRLIPKVTAIDGEGLSIKCPVAGYPIEEVHWEKVPPKIESFAFPFD 203
S L + VT K A P
Sbjct: 203 SAPSDPLDI----------VVT------------------------GPYEKPSLSAQPGP 228
Query: 204 GLPEGARTRVICGVTHGDPPLTIRWLKDGKPLSPRFPVNVSDLDSFSSLLSINSVSAAHS 263
+ G + C ++G R P +F + + + H
Sbjct: 229 KVQAGESVTLSCSSR--SSYDMYHLSREGGAHERRLPAVRKVNRTFQADFPLGPAT--HG 284
Query: 264 GEYTCVASNTAAQARYS 280
G Y C S + +S
Sbjct: 285 GTYRCFGSFRHSPYEWS 301
Score = 38.7 bits (90), Expect = 0.001
Identities = 18/84 (21%), Positives = 33/84 (39%), Gaps = 7/84 (8%)
Query: 199 AFPFDGLPEGARTRVICGVTHGDPPLTIRWLKDGKPLSPRFPVNVSDLDSFSSLLSINSV 258
A+P +P G + C H K+ + P F + +++ V
Sbjct: 29 AWPSAVVPRGGHVTLRCHYRHRFN--NFMLYKEDRIHIPIFHGRIFQ-----ESFNMSPV 81
Query: 259 SAAHSGEYTCVASNTAAQARYSSK 282
+ AH+G YTC S+ + +S+
Sbjct: 82 TTAHAGNYTCRGSHPHSPTGWSAP 105
Score = 29.1 bits (65), Expect = 1.8
Identities = 15/121 (12%), Positives = 24/121 (19%), Gaps = 48/121 (39%)
Query: 67 ISHVTVEDGGEYACVAENRAGTCE-----------ITPYDSGPYLIA------------- 102
I + + G Y C + +T P L A
Sbjct: 178 IGPMMLALAGTYRCYGSVTHTPYQLSAPSDPLDIVVTGPYEKPSLSAQPGPKVQAGESVT 237
Query: 103 -------------WFKDGR---------QIPGRTSSTSLVINPVGREDRGIYQCIARRSD 140
++G + RT + P G Y+C
Sbjct: 238 LSCSSRSSYDMYHLSREGGAHERRLPAVRKVNRTFQADFPLGPA--THGGTYRCFGSFRH 295
Query: 141 G 141
Sbjct: 296 S 296
Score = 28.3 bits (63), Expect = 3.2
Identities = 11/74 (14%), Positives = 20/74 (27%), Gaps = 7/74 (9%)
Query: 12 QTLQPGPAVSLKCIASGNPTPDIGWTLDGFELPTNNRFVIGQFVSGHGDVISHVNISHVT 71
+Q G +V+L C + + + +G + +
Sbjct: 228 PKVQAGESVTLSCSSRSSYDMYH-LSREGGAHERRLP------AVRKVNRTFQADFPLGP 280
Query: 72 VEDGGEYACVAENR 85
GG Y C R
Sbjct: 281 ATHGGTYRCFGSFR 294
>4f80_A Butyrophilin subfamily 3 member A1; B7 superfamily, CD277, immune
system; 1.94A {Homo sapiens} PDB: 4f9l_A* 4f9p_A 4f8t_A
4f8q_A
Length = 226
Score = 55.1 bits (132), Expect = 3e-09
Identities = 27/229 (11%), Positives = 55/229 (24%), Gaps = 71/229 (31%)
Query: 88 TCEITP-YDSGPYLIAWFKDGRQIP-------------------GRTSST---------S 118
C + P + + W + GRTS +
Sbjct: 25 PCHLFPTMSAETMELKWVSSSLRQVVNVYADGKEVEDRQSAPYRGRTSILRDGITAGKAA 84
Query: 119 LVINPVGREDRGIYQCIARRSDGDVAQGSAELQLGGLPYVRLIPKVTAIDGEGLSIKCPV 178
L I+ V D G Y C + D
Sbjct: 85 LRIHNVTASDSGKYLCYFQDGDFY------------------------------------ 108
Query: 179 AGYPIEEVHWEKVPPKIESFAFPFDGLPEGARTRVICGVTHGDPPLTIRWLKD-GKPLSP 237
E+ E + S + + C T P I+W + G+ +
Sbjct: 109 -----EKALVELKVAALGSDLHVDVKGYKDGGIHLECRSTGWYPQPQIQWSNNKGENIPT 163
Query: 238 RFPVNVSDLDSFSSLLSINSVSAAHSGEYTCVASNTAAQARYSSKLQVK 286
V+D ++ + + + +C ++ ++ + +
Sbjct: 164 VEAPVVADGVGLYAVAASVIMRGSSGEGVSCTIRSSLLGLEKTASISIA 212
Score = 39.7 bits (92), Expect = 5e-04
Identities = 15/84 (17%), Positives = 28/84 (33%), Gaps = 4/84 (4%)
Query: 10 IEQTLQPGPAVSLKCIASGN-PTPDIGWTLDGFELPTNNRFVIGQFVSGHGDVISHVNIS 68
++ + L+C ++G P P I W+ + E + G V + V
Sbjct: 126 VDVKGYKDGGIHLECRSTGWYPQPQIQWSNNKGENIPTVEAPVVADGVGLYAVAASVI-- 183
Query: 69 HVTVEDGGEYACVAENRAGTCEIT 92
+ G +C + E T
Sbjct: 184 -MRGSSGEGVSCTIRSSLLGLEKT 206
Score = 26.6 bits (58), Expect = 9.8
Identities = 8/33 (24%), Positives = 14/33 (42%), Gaps = 2/33 (6%)
Query: 58 HGDVISHVNISHVTVEDGGEYACVAENRAGTCE 90
G + I +VT D G+Y C ++ +
Sbjct: 80 AGKAA--LRIHNVTASDSGKYLCYFQDGDFYEK 110
>2if7_A SLAM family member 6; NTB-A, homophilic receptor, immune system;
3.00A {Homo sapiens}
Length = 193
Score = 52.3 bits (125), Expect = 2e-08
Identities = 30/172 (17%), Positives = 47/172 (27%), Gaps = 48/172 (27%)
Query: 114 TSSTSLVINPVGREDRGIYQCIARRSDGDVAQGSAELQLGGLPYVRLIPKVTAIDGEGLS 173
T S SL ++ + ED G Y+ L L +VT +
Sbjct: 67 TQSYSLQLSNLKMEDTGSYRAQISTKTSAKLSSYTLRILRQLR----NIQVTNHSQLFQN 122
Query: 174 IKCPVAGYPIEEVHWEKVPPKIESFAFPFDGLPEGARTRVICGVTHGDPPLTIRWLKDGK 233
+ C + + C V D ++ RW G
Sbjct: 123 MTCEL---------------------------------HLTCSVEDADDNVSFRWEALGN 149
Query: 234 PLSPRFPVNVSDLDSFSSLLSINSVSAAHSGEYTCVASNTAAQARYSSKLQV 285
LS S +L + +YTC+A N + +S Q
Sbjct: 150 TLS-----------SQPNLTVSWDPRISSEQDYTCIAENAVSNLSFSVSAQK 190
Score = 34.2 bits (78), Expect = 0.025
Identities = 12/105 (11%), Positives = 21/105 (20%), Gaps = 36/105 (34%)
Query: 67 ISHVTVEDGGEYACVAENRAGTCEIT------PYDSGPYL-------------------- 100
+S++ +ED G Y + + +
Sbjct: 74 LSNLKMEDTGSYRAQISTKTSAKLSSYTLRILRQLRNIQVTNHSQLFQNMTCELHLTCSV 133
Query: 101 --------IAWFKDGRQIPGRTSSTSLVINPVGREDRGIYQCIAR 137
W G + + V Y CIA
Sbjct: 134 EDADDNVSFRWEALGNTLS--SQPNLTVSWDPRISSEQDYTCIAE 176
Score = 32.7 bits (74), Expect = 0.073
Identities = 12/74 (16%), Positives = 24/74 (32%), Gaps = 18/74 (24%)
Query: 215 CGVTHGDPPLTIRWLKDGKPLS----------------PRFPVNVSDLDSFSSLLSINSV 258
G+ I WL + L+ P+ ++ S+S L ++++
Sbjct: 20 LEFPAGEKVNFITWLFNETSLAFIVPHETKSPEIHVTNPKQGKRLNFTQSYS--LQLSNL 77
Query: 259 SAAHSGEYTCVASN 272
+G Y S
Sbjct: 78 KMEDTGSYRAQIST 91
Score = 32.7 bits (74), Expect = 0.078
Identities = 11/70 (15%), Positives = 20/70 (28%), Gaps = 18/70 (25%)
Query: 20 VSLKCIA-SGNPTPDIGWTLDGFELPTNNRFVIGQFVSGHGDVISHVNISHVT-VEDGGE 77
+ L C + W G L + ++ +S + +
Sbjct: 127 LHLTCSVEDADDNVSFRWEALGNTLSSQ----------------PNLTVSWDPRISSEQD 170
Query: 78 YACVAENRAG 87
Y C+AEN
Sbjct: 171 YTCIAENAVS 180
>3uto_A Twitchin; kinase, muscle sarcomere, transferase; HET: FLC P33;
2.40A {Caenorhabditis elegans} PDB: 1koa_A
Length = 573
Score = 54.1 bits (130), Expect = 2e-08
Identities = 20/89 (22%), Positives = 35/89 (39%), Gaps = 5/89 (5%)
Query: 2 PPILTYSFIEQTLQPGPAVSLKCIASGNPTPDIGWTLDGFELPTNNRFVIGQFVSGHGDV 61
P + G + + C + P + W D EL + +++ +G+
Sbjct: 482 QPRFIVKPYGTEVGEGQSANFYCRVIASSPPVVTWHKDDRELKQSVKYMKRY----NGND 537
Query: 62 ISHVNISHVTVEDGGEYACVAENRAGTCE 90
+ I+ V +D GEY A+N GT E
Sbjct: 538 YG-LTINRVKGDDKGEYTVRAKNSYGTKE 565
Score = 54.1 bits (130), Expect = 2e-08
Identities = 22/81 (27%), Positives = 30/81 (37%), Gaps = 6/81 (7%)
Query: 207 EGARTRVICGVTHGDPPLTIRWLKDGKPL--SPRFPVNVSDLDSFSSLLSINSVSAAHSG 264
EG C V P + W KD + L S ++ + + L+IN V G
Sbjct: 496 EGQSANFYCRVI-ASSPPVVTWHKDDRELKQSVKY---MKRYNGNDYGLTINRVKGDDKG 551
Query: 265 EYTCVASNTAAQARYSSKLQV 285
EYT A N+ L V
Sbjct: 552 EYTVRAKNSYGTKEEIVFLNV 572
Score = 41.0 bits (96), Expect = 3e-04
Identities = 17/71 (23%), Positives = 25/71 (35%), Gaps = 11/71 (15%)
Query: 88 TCEITPYDSGPYLIAWFKDGRQIPGRTSST--------SLVINPVGREDRGIYQCIARRS 139
C + P + W KD R++ L IN V +D+G Y A+ S
Sbjct: 503 YCRVIASSP-PV-VTWHKDDRELKQSVKYMKRYNGNDYGLTINRVKGDDKGEYTVRAKNS 560
Query: 140 DGDVAQGSAEL 150
G + L
Sbjct: 561 YGT-KEEIVFL 570
>2dav_A SLOW MYBP-C, myosin-binding protein C, SLOW-type; IG domain,
structural genomics, NPPSFA; NMR {Homo sapiens} SCOP:
b.1.1.4
Length = 126
Score = 50.4 bits (120), Expect = 3e-08
Identities = 14/93 (15%), Positives = 24/93 (25%), Gaps = 11/93 (11%)
Query: 9 FIE----QTLQPGPAVSLKCIASGNP---TPDIGWTLDGFELPTN---NRFVIGQFVSGH 58
FIE T++ G ++ P I W + + + + H
Sbjct: 10 FIEKPQGGTVKVGEDITFIAKVKAEDLLRKPTIKWFKGKWMDLASKAGKHLQLKETFERH 69
Query: 59 GDVISHV-NISHVTVEDGGEYACVAENRAGTCE 90
V + I G Y C +
Sbjct: 70 SRVYTFEMQIIKAKDNFAGNYRCEVTYKDKFDS 102
Score = 49.2 bits (117), Expect = 9e-08
Identities = 16/92 (17%), Positives = 25/92 (27%), Gaps = 12/92 (13%)
Query: 206 PEGARTRVICGVTHGDPPL---TIRWLKDGK---PLSPRFPVNVSDLDSFSSL-----LS 254
G I V + L TI+W K + + + S +
Sbjct: 20 KVGEDITFIAKVK-AEDLLRKPTIKWFKGKWMDLASKAGKHLQLKETFERHSRVYTFEMQ 78
Query: 255 INSVSAAHSGEYTCVASNTAAQARYSSKLQVK 286
I +G Y C + S L+V
Sbjct: 79 IIKAKDNFAGNYRCEVTYKDKFDSCSFDLEVH 110
Score = 35.0 bits (80), Expect = 0.007
Identities = 9/48 (18%), Positives = 16/48 (33%), Gaps = 1/48 (2%)
Query: 104 FKDGRQIPGRTSSTSLVINPVGREDRGIYQCIARRSDGDVAQGSAELQ 151
K+ + R + + I G Y+C D S +L+
Sbjct: 62 LKETFERHSRVYTFEMQIIKAKDNFAGNYRCEVTYKDKFD-SCSFDLE 108
>2zg1_A Sialic acid-binding IG-like lectin 5; siglec-5 inhibitory receptor,
two-domain structure, V-SET, C2-SET, IG-like domain,
6'-sialyllactose complex; HET: SIA; 2.70A {Homo sapiens}
PDB: 2zg3_A* 2zg2_A
Length = 214
Score = 52.1 bits (124), Expect = 3e-08
Identities = 38/199 (19%), Positives = 55/199 (27%), Gaps = 50/199 (25%)
Query: 94 YDSGPYLIAWFKDGR-QIPG--RTSSTSLVINPVGREDRGIYQCIARRSDGDVAQGSAEL 150
++ + GR ++ G + + SL I ED G Y R
Sbjct: 56 TNNPDRRVKPETQGRFRLLGDVQKKNCSLSIGDARMEDTGSYFFRVERGRDVKY------ 109
Query: 151 QLGGLPYVRLIPKVTAIDGEGLSIKCPVAGYPIEEVHWEKVPPKIESFAFPFDGLPEGAR 210
+ L++ EV P I L G
Sbjct: 110 ---------------SYQQNKLNL----------EVTALIEKPDIHFLEP----LESGRP 140
Query: 211 TRVICGVTH---GDPPLTIRWLKDG-KPLSPRFPVNVSDLDSFSSLLSINSVSAAHSGEY 266
TR+ C + PPLT W + PL P SS L++ H
Sbjct: 141 TRLSCSLPGSCEAGPPLTFSWTGNALSPLDPETTR--------SSELTLTPRPEDHGTNL 192
Query: 267 TCVASNTAAQARYSSKLQV 285
TC AQ +Q+
Sbjct: 193 TCQMKRQGAQVTTERTVQL 211
Score = 29.8 bits (66), Expect = 0.82
Identities = 10/83 (12%), Positives = 19/83 (22%), Gaps = 15/83 (18%)
Query: 10 IEQTLQPGPAVSLKCIAS----GNPTPDIGWTLDGFELPTNNRFVIGQFVSGHGDVISHV 65
+ L+ G L C P WT + S +
Sbjct: 131 FLEPLESGRPTRLSCSLPGSCEAGPPLTFSWTGNALSPLDPE-----------TTRSSEL 179
Query: 66 NISHVTVEDGGEYACVAENRAGT 88
++ + G C + +
Sbjct: 180 TLTPRPEDHGTNLTCQMKRQGAQ 202
>3cx2_A Myosin-binding protein C, cardiac-type; protonation states,
actin-binding, cardiomyopathy, cell adhesion, disease
mutation, immunoglobulin domain; 1.30A {Homo sapiens}
PDB: 2v6h_A 2avg_A
Length = 108
Score = 48.8 bits (116), Expect = 7e-08
Identities = 19/91 (20%), Positives = 27/91 (29%), Gaps = 12/91 (13%)
Query: 207 EGARTRVICGVTHGDPPL---TIRWLKDGK-PLSPRFPVNVSDLDSF-------SSLLSI 255
G V G L ++W K LS + ++ DS+ L I
Sbjct: 18 VGGSITFSARVA-GASLLKPPVVKWFKGKWVDLSSKVGQHLQLHDSYDRASKVYLFELHI 76
Query: 256 NSVSAAHSGEYTCVASNTAAQARYSSKLQVK 286
A +G Y C S + L V
Sbjct: 77 TDAQPAFTGSYRCEVSTKDKFDCSNFNLTVH 107
Score = 48.1 bits (114), Expect = 2e-07
Identities = 10/93 (10%), Positives = 22/93 (23%), Gaps = 11/93 (11%)
Query: 9 FIE----QTLQPGPAVSLKCIASGNP---TPDIGWTLDGFEL---PTNNRFVIGQFVSGH 58
F+ + G +++ +G P + W + +
Sbjct: 7 FVMRPQDGEVTVGGSITFSARVAGASLLKPPVVKWFKGKWVDLSSKVGQHLQLHDSYDRA 66
Query: 59 GDVISHV-NISHVTVEDGGEYACVAENRAGTCE 90
V +I+ G Y C +
Sbjct: 67 SKVYLFELHITDAQPAFTGSYRCEVSTKDKFDC 99
Score = 35.0 bits (80), Expect = 0.006
Identities = 8/48 (16%), Positives = 11/48 (22%), Gaps = 1/48 (2%)
Query: 104 FKDGRQIPGRTSSTSLVINPVGREDRGIYQCIARRSDGDVAQGSAELQ 151
D + L I G Y+C D + L
Sbjct: 59 LHDSYDRASKVYLFELHITDAQPAFTGSYRCEVSTKDKF-DCSNFNLT 105
>1ugn_A LIR1, leukocyte immunoglobulin-like receptor 1; immunoglobulin-like
folds, immune system; 1.80A {Homo sapiens} SCOP: b.1.1.4
b.1.1.4 PDB: 3d2u_D* 1g0x_A 1p7q_D 1ufu_A 1vdg_A 2gw5_A
2dyp_D 2otp_A 3q2c_A
Length = 198
Score = 50.2 bits (120), Expect = 1e-07
Identities = 26/201 (12%), Positives = 52/201 (25%), Gaps = 47/201 (23%)
Query: 88 TCEITPYDSGPYLIAWFKDGRQIP-------GRTSSTSLVINPVGREDRGIYQCIARRSD 140
C+ +++ + P I + E G Y+C
Sbjct: 25 RCQGGQ---ETQEYRLYREKKTAPWITRIPQELVKKGQFPIPSITWEHTGRYRCYYGSDT 81
Query: 141 GDVAQGSAELQLGGLPYVRLIPKVTAIDGEGLSIKCPVAGYPIEEVHWEKVPPKIESFAF 200
++ S L+ V + P + A
Sbjct: 82 AGRSESSDPLE--------------------------------LVVTGAYIKPTLS--AQ 107
Query: 201 PFDGLPEGARTRVICGVTHGDPPLTIRWLKDGKPLSPRFPVNVSDLD-SFSSLLSINSVS 259
P + G + C K+G+ P+ + S ++ S+ VS
Sbjct: 108 PSPVVNSGGNVTLQCDS--QVAFDGFILCKEGEDEHPQCLNSQPHARGSSRAIFSVGPVS 165
Query: 260 AAHSGEYTCVASNTAAQARYS 280
+ Y C A ++ + +S
Sbjct: 166 PSRRWWYRCYAYDSNSPYEWS 186
Score = 33.7 bits (77), Expect = 0.043
Identities = 11/60 (18%), Positives = 18/60 (30%), Gaps = 6/60 (10%)
Query: 217 VT---HGDPPLTI-RWLKDGKPLSPRFPVNVSDLDSFSSLLSINSVSAAHSGEYTCVASN 272
VT G R ++ K + I S++ H+G Y C +
Sbjct: 22 VTLRCQGGQETQEYRLYREKKTAPW--ITRIPQELVKKGQFPIPSITWEHTGRYRCYYGS 79
Score = 26.3 bits (58), Expect = 8.9
Identities = 13/84 (15%), Positives = 24/84 (28%), Gaps = 5/84 (5%)
Query: 2 PPILTYSFIEQTLQPGPAVSLKCIASGNPTPDIGWTLDGFELPTNNRFVIGQFVSGHGDV 61
P L+ + G V+L+C S +G + G
Sbjct: 101 KPTLSAQP-SPVVNSGGNVTLQC-DSQVAFDGFILCKEGEDEHPQCL---NSQPHARGSS 155
Query: 62 ISHVNISHVTVEDGGEYACVAENR 85
+ ++ V+ Y C A +
Sbjct: 156 RAIFSVGPVSPSRRWWYRCYAYDS 179
>1n26_A IL-6 receptor alpha chain; transmembrane, glycoprotein,
immunoglobulin domain, cytokine; HET: NAG BMA MAN NDG;
2.40A {Homo sapiens} SCOP: b.1.1.4 b.1.2.1 b.1.2.1 PDB:
1p9m_C 2arw_A
Length = 325
Score = 50.2 bits (119), Expect = 3e-07
Identities = 14/78 (17%), Positives = 23/78 (29%), Gaps = 7/78 (8%)
Query: 208 GARTRVICGVTHGDPPLTIRWLKDGKPLSPRFPVNVSDLDSFSSLLSINSVSAAHSGEYT 267
G + C + T+ W+ S L + SV SG Y+
Sbjct: 21 GDSVTLTCPGVEPEDNATVHWVLRKPAAGSHP----SRWAGMGRRLLLRSVQLHDSGNYS 76
Query: 268 CVASNTAAQARYSSKLQV 285
C + + + L V
Sbjct: 77 CYRAG---RPAGTVHLLV 91
Score = 46.0 bits (108), Expect = 5e-06
Identities = 16/85 (18%), Positives = 27/85 (31%), Gaps = 9/85 (10%)
Query: 2 PPILTYSFIEQTLQPGPAVSLKCIAS-GNPTPDIGWTLDGFELPTNNRFVIGQFVSGHGD 60
P + T PG +V+L C + W L ++ G
Sbjct: 6 CPAQEVARGVLTSLPGDSVTLTCPGVEPEDNATVHWVLRKPAAGSHPSRWAG-------- 57
Query: 61 VISHVNISHVTVEDGGEYACVAENR 85
+ + + V + D G Y+C R
Sbjct: 58 MGRRLLLRSVQLHDSGNYSCYRAGR 82
Score = 38.3 bits (88), Expect = 0.002
Identities = 12/91 (13%), Positives = 19/91 (20%), Gaps = 10/91 (10%)
Query: 88 TCEITPYDSGPYLIAWFKDGRQIPGR-----TSSTSLVINPVGREDRGIYQCIARRSDGD 142
TC + W L++ V D G Y C
Sbjct: 27 TC-PGVEPEDNATVHWVLRKPAAGSHPSRWAGMGRRLLLRSVQLHDSGNYSCYR----AG 81
Query: 143 VAQGSAELQLGGLPYVRLIPKVTAIDGEGLS 173
G+ L + P + +
Sbjct: 82 RPAGTVHLLVDVPPEEPQLSCFRKSPLSNVV 112
>2wqr_A IG epsilon chain C region; immune system, immunoglobulin domain,
glycoprotein; HET: NAG BMA MAN PG4; 1.90A {Homo sapiens}
PDB: 2y7q_B* 1o0v_A* 3h9y_A* 3h9z_A* 3ha0_A* 1fp5_A
1f6a_B 1g84_A
Length = 323
Score = 50.1 bits (119), Expect = 3e-07
Identities = 47/300 (15%), Positives = 84/300 (28%), Gaps = 30/300 (10%)
Query: 1 TPP--ILTYSFIEQTLQPGPAVSLKCIASG-NPTP-DIGWTLDGFELPTNNRFVIGQFVS 56
TPP + S + P + L C+ SG P I W DG + +
Sbjct: 6 TPPTVKILQSSCDGGGHFPPTIQLLCLVSGYTPGTIQITWLEDGQVMDVDLSTASTTQEG 65
Query: 57 GHGDVISHVNISHVTVEDGGEYACVAENRAGTCEITPYDSGPYLIAWFKDGRQIP----- 111
S + +S Y C + T E + P
Sbjct: 66 ELASTQSELTLSQKHWLSDRTYTCQVTYQGHTFEDSTKKCADSNPRGVSAYLSRPSPFDL 125
Query: 112 --GRTSSTSLVINPVGREDRG--IYQCIARRSDGDVAQGSAELQLGGLPYVRLIPKVTAI 167
++ + + ++ + + A + + E Q G V V
Sbjct: 126 FIRKSPTITCLVVDLAPSKGTVQLTWSRASGKPVNHSTRKEEKQRNGTLTVTSTLPVGTR 185
Query: 168 DGE-GLSIKCPV--------AGYPIEEVHWEKVPPKIESFAFPFDGLPEGARTRVICGVT 218
D G + +C V + + P++ +FA P RT + C +
Sbjct: 186 DWIEGETYQCRVTHPHLPRALMRSTTKTSGPRAAPEVYAFATPEWPGSRDKRT-LACLIQ 244
Query: 219 HGDPP-LTIRWLKDGKPLSPRFPVNVSDLD------SFSSLLSINSVSAAHSGEYTCVAS 271
+ P ++++WL + L S L + E+ C A
Sbjct: 245 NFMPEDISVQWLHNEVQLPDARHSTTQPRKTKGSGFFVFSRLEVTRAEWEQKDEFICRAV 304
Score = 33.5 bits (76), Expect = 0.072
Identities = 18/202 (8%), Positives = 44/202 (21%), Gaps = 47/202 (23%)
Query: 88 TCEITPYDSGPYLIAWFKDGRQIPGRTSSTSLVINPVGREDRGIYQCIARRSDGDVAQGS 147
C ++ Y G I W +DG+ + + ++ + S
Sbjct: 30 LCLVSGYTPGTIQITWLEDGQVM------DVDLSTASTTQEGELA--------------S 69
Query: 148 AELQLGGLPYVRLIPKVTAIDGE-GLSIKCPVA-------GYPIEEVHWEKVPPKIESFA 199
+ +L ++ + C V +
Sbjct: 70 TQSEL----------TLSQKHWLSDRTYTCQVTYQGHTFEDSTKKCADSNPRGVSAYLSR 119
Query: 200 FPFDGLPEGARTRVIC---GVTHGDPPLTIRWLKDGKPLSPRFPVNVSDLDS-----FSS 251
L + C + + + W + + +S
Sbjct: 120 PSPFDLFIRKSPTITCLVVDLAPSKGTVQLTWSRASGKPVNH-STRKEEKQRNGTLTVTS 178
Query: 252 LLSINSVSAAHSGEYTCVASNT 273
L + + Y C ++
Sbjct: 179 TLPVGTRDWIEGETYQCRVTHP 200
>2v5y_A Receptor-type tyrosine-protein phosphatase MU; membrane, hydrolase,
glycoprotein, receptor protei tyrosine phosphatase, cell
adhesion; HET: NAG; 3.10A {Homo sapiens}
Length = 731
Score = 50.5 bits (120), Expect = 3e-07
Identities = 16/77 (20%), Positives = 27/77 (35%), Gaps = 2/77 (2%)
Query: 12 QTLQPGPAVSLKCIASGNPTPDIGWTLDGFELPTNNRFVIGQFVSGHGDVISHVNISHVT 71
+ G + +C A G L G ++ I V+ I+ N+ + T
Sbjct: 174 VEVNAGQFATFQCSAIGRTVAGDRLWLQGIDVRDAPLKEI--KVTSSRRFIASFNVVNTT 231
Query: 72 VEDGGEYACVAENRAGT 88
D G+Y C+ G
Sbjct: 232 KRDAGKYRCMIRTEGGV 248
Score = 44.8 bits (105), Expect = 2e-05
Identities = 20/176 (11%), Positives = 39/176 (22%), Gaps = 39/176 (22%)
Query: 101 IAWFKDGRQIPGRTSSTSLVINPVGREDRGIYQCIARRSDGDVAQGSAELQLGGLPYVRL 160
W G + L I+ + +
Sbjct: 108 PIWNISGDPTR-TWNRAELAISTFWPNFYQVIFEVITSGHQ------------------- 147
Query: 161 IPKVTAIDGEGLSIKCPVAGYPIEEVHWEKVPPKIESFAFPFDGLPEGARTRVICGVTHG 220
G + V G+P +E + G C G
Sbjct: 148 --------GYLAIDEVKVLGHPCTRTPHFLRIQNVE--------VNAGQFATFQCSA-IG 190
Query: 221 DPPLTIRWLKDGKPLS--PRFPVNVSDLDSFSSLLSINSVSAAHSGEYTCVASNTA 274
R G + P + V+ F + ++ + + +G+Y C+
Sbjct: 191 RTVAGDRLWLQGIDVRDAPLKEIKVTSSRRFIASFNVVNTTKRDAGKYRCMIRTEG 246
Score = 42.5 bits (99), Expect = 1e-04
Identities = 31/208 (14%), Positives = 57/208 (27%), Gaps = 45/208 (21%)
Query: 20 VSLKCIASGNPTPDIGWTLDGFELPTNNRFVIGQFVSGHGDVISHVNISHVTVEDGGEYA 79
+++ + P + W + G T NR + +S V +T G A
Sbjct: 94 LNVYVKVNNGPLGNPIWNISGDPTRTWNRAEL--AISTFWPNFYQVIFEVITSGHQGYLA 151
Query: 80 C-----------------------VAENRAGTCEITPYDSGPYLIAWFKDG--------- 107
V + T + + + G
Sbjct: 152 IDEVKVLGHPCTRTPHFLRIQNVEVNAGQFATFQCSAIGRTVAGDRLWLQGIDVRDAPLK 211
Query: 108 --RQIPGRTSSTSLVINPVGREDRGIYQCIARRSDGDVAQGSAELQLGGLPYVRLIPKVT 165
+ R S + + D G Y+C+ R G AEL + P P++
Sbjct: 212 EIKVTSSRRFIASFNVVNTTKRDAGKYRCMIRTEGGVGISNYAELVVKEPPVPIAPPQLA 271
Query: 166 AIDGEGLSIK---------CPVAGYPIE 184
++ L I+ P+ +E
Sbjct: 272 SVGATYLWIQLNANSINGDGPIVAREVE 299
>2wng_A Tyrosine-protein phosphatase non-receptor type substrate 1; signal
regulatory protein alpha, immunoglobulin superfamily,
phosphoprotein; HET: NAG; 2.49A {Homo sapiens}
Length = 327
Score = 49.5 bits (118), Expect = 3e-07
Identities = 43/329 (13%), Positives = 81/329 (24%), Gaps = 91/329 (27%)
Query: 15 QPGPAVSLKCIASGN-PTPDIGW---------TLDGFELPTNNRFVIGQFVSGHGDVISH 64
G + L C + P I W + + R + ++
Sbjct: 16 AAGESAILHCTVTSLIPVGPIQWFRGAGPARELIYNQKEGHFPRVTTVSESTKRENMDFS 75
Query: 65 VNISHVTVEDGGEYACVAENRAG------------------------------------- 87
++IS++T D G Y CV +
Sbjct: 76 ISISNITPADAGTYYCVKFRKGSPDTEFKSGAGTELSVRAKPSAPVVSGPAARATPQHTV 135
Query: 88 --TCEITPYDSGPYLIAWFKDGRQIPGRTSSTSLVINPVGREDRGIYQCIARRSDGDVAQ 145
TCE + + WFK+G ++ ++ +
Sbjct: 136 SFTCESHGFSPRDITLKWFKNGNELSDFQTNVD-----------------PVGESVSYSI 178
Query: 146 GSAELQLGGLPYVRLIPKVTAIDGE-GLSIKCPV------AGYPIEEVHWEKVPPKIESF 198
S KV + + C V + + +
Sbjct: 179 HS---TA----------KVVLTREDVHSQVICEVAHVTLQGDPLRGTANLSETIRVPPTL 225
Query: 199 AFPFDGLPEGARTRVICGVTHGDP-PLTIRWLKDGKPLSPRFPVNVSDLD----SFSSLL 253
+ + V C V P L + WL++G V++ ++ S L
Sbjct: 226 EVTQQPVRAENQVNVTCQVRKFYPQRLQLTWLENGNVSRTETASTVTENKDGTYNWMSWL 285
Query: 254 SINSVSAAHSGEYTCVASNTAAQARYSSK 282
+N + + TC + A S
Sbjct: 286 LVNVSAHRDDVKLTCQVEHDGQPAVSKSH 314
Score = 41.1 bits (96), Expect = 3e-04
Identities = 23/156 (14%), Positives = 39/156 (25%), Gaps = 38/156 (24%)
Query: 1 TPPILTYSFIEQTLQPGPAVSLKCIASG-NPTP-DIGWTLDGFELPTNNRFVIGQFVSGH 58
P S P VS C + G +P + W +G EL V S
Sbjct: 116 KPSAPVVSGPAARATPQHTVSFTCESHGFSPRDITLKWFKNGNELSDFQTNVDPVGESVS 175
Query: 59 GDVISHVNISHVTVEDGGEYACVAENRAG------------------------------- 87
+ S + + + C +
Sbjct: 176 YSIHSTAKVVLTREDVHSQVICEVAHVTLQGDPLRGTANLSETIRVPPTLEVTQQPVRAE 235
Query: 88 -----TCEITPYDSGPYLIAWFKDGRQIPGRTSSTS 118
TC++ + + W ++G T+ST
Sbjct: 236 NQVNVTCQVRKFYPQRLQLTWLENGNVSRTETASTV 271
>2gi7_A GPVI protein; IG-like domains, blood clotting, cell adhesion; 2.40A
{Homo sapiens}
Length = 184
Score = 47.5 bits (113), Expect = 8e-07
Identities = 29/178 (16%), Positives = 48/178 (26%), Gaps = 44/178 (24%)
Query: 103 WFKDGRQIPGRTSSTSLVINPVGREDRGIYQCIARRSDGDVAQGSAELQLGGLPYVRLIP 162
K L I + R G Y+C + + S +L+L
Sbjct: 40 LEKLSSSRYQ--DQAVLFIPAMKRSLAGRYRCSYQNGSL-WSLPSDQLEL---------- 86
Query: 163 KVTAIDGEGLSIKCPVAGYPIEEVHWEKVPPKIESFAFPFDGLPEGARTRVICGVTHGDP 222
P + A P + G + C
Sbjct: 87 ----------------------VATGVFAKPSLS--AQPGPAVSSGGDVTLQCQTR--YG 120
Query: 223 PLTIRWLKDGKPLSPRFPVNVSDLDSFSSLLSINSVSAAHSGEYTCVASNTAAQARYS 280
K+G P + P + + I +V+AAHSG Y C + ++ +S
Sbjct: 121 FDQFALYKEGDPAPYKNPER-----WYRASFPIITVTAAHSGTYRCYSFSSRDPYLWS 173
Score = 39.0 bits (91), Expect = 6e-04
Identities = 19/113 (16%), Positives = 28/113 (24%), Gaps = 38/113 (33%)
Query: 67 ISHVTVEDGGEYACVAENRAGTCE--------ITPYDSGPYLIA---------------- 102
I + G Y C +N + T + P L A
Sbjct: 56 IPAMKRSLAGRYRCSYQNGSLWSLPSDQLELVATGVFAKPSLSAQPGPAVSSGGDVTLQC 115
Query: 103 ----------WFKDGRQIPGRTSS----TSLVINPVGREDRGIYQCIARRSDG 141
+K+G P + S I V G Y+C + S
Sbjct: 116 QTRYGFDQFALYKEGDPAPYKNPERWYRASFPIITVTAAHSGTYRCYSFSSRD 168
Score = 32.1 bits (73), Expect = 0.12
Identities = 18/94 (19%), Positives = 33/94 (35%), Gaps = 15/94 (15%)
Query: 193 PKIESFAFPFDGLPEGARTRVICGVTHGDPPLTI-RWLKDGKPLSPRFPVNVSDLDSFSS 251
PK A P +P + C G P + + R K +
Sbjct: 7 PKPSLQALPSSLVPLEKPVTLRC---QGPPGVDLYRLEKLSSSRYQ-----------DQA 52
Query: 252 LLSINSVSAAHSGEYTCVASNTAAQARYSSKLQV 285
+L I ++ + +G Y C N + + S +L++
Sbjct: 53 VLFIPAMKRSLAGRYRCSYQNGSLWSLPSDQLEL 86
>3pv7_A B7-H6, IG-like domain-containing protein
DKFZP686O24166/DKFZP686I21167; NK cell receptor,
receptor-ligand complex, immune system; HET: NAG; 2.00A
{Homo sapiens} PDB: 3pv6_A*
Length = 248
Score = 47.8 bits (113), Expect = 1e-06
Identities = 35/197 (17%), Positives = 56/197 (28%), Gaps = 43/197 (21%)
Query: 93 PYDSGPYLIAWFKDGRQIPGRTSST-----------SLVINPVGREDRGIYQCIARRSDG 141
+ F Q R + SL + + E+ G Y+C +
Sbjct: 47 LTFDKEVKVFEFFGDHQEAFRPGAIVSPWRLKSGDASLRLPGIQLEEAGEYRCEVVVTPL 106
Query: 142 DVAQGSAELQLGGLPYVRLIPKVTAIDGEGLSIKCPVAG-YPIE-EVHWEKVPPKIESFA 199
AQG+ +L++ P RL+ + C +G YP + WEK
Sbjct: 107 -KAQGTVQLEVVASPASRLLLDQVGMKENEDKYMCESSGFYPEAINITWEK--------- 156
Query: 200 FPFDGLPEGARTRVICGVTHGDPPLTIRWLKDGKPLSPRFPVNVSDLDSFSSLLSINSVS 259
+ V G DG F + +S L +NS
Sbjct: 157 ---QTQKFPHPIEISEDVITGPTIKN----MDGT-----F--------NVTSCLKLNSSQ 196
Query: 260 AAHSGEYTCVASNTAAQ 276
Y CV + +
Sbjct: 197 EDPGTVYQCVVRHASLH 213
Score = 32.7 bits (74), Expect = 0.10
Identities = 13/55 (23%), Positives = 24/55 (43%)
Query: 232 GKPLSPRFPVNVSDLDSFSSLLSINSVSAAHSGEYTCVASNTAAQARYSSKLQVK 286
+ P V+ L S + L + + +GEY C T +A+ + +L+V
Sbjct: 63 QEAFRPGAIVSPWRLKSGDASLRLPGIQLEEAGEYRCEVVVTPLKAQGTVQLEVV 117
Score = 31.6 bits (71), Expect = 0.25
Identities = 15/87 (17%), Positives = 26/87 (29%), Gaps = 9/87 (10%)
Query: 9 FIEQTLQPGPAVSLKCIASG-NPTP-DIGWTLDGFELPTNNRFVIGQFVSGH---GD--- 60
++Q C +SG P +I W + P D
Sbjct: 125 LLDQVGMKENEDKYMCESSGFYPEAINITWEKQTQKFPHPIEISEDVITGPTIKNMDGTF 184
Query: 61 -VISHVNISHVTVEDGGEYACVAENRA 86
V S + ++ + G Y CV + +
Sbjct: 185 NVTSCLKLNSSQEDPGTVYQCVVRHAS 211
Score = 27.0 bits (59), Expect = 6.3
Identities = 12/91 (13%), Positives = 25/91 (27%), Gaps = 22/91 (24%)
Query: 11 EQTLQPGPAVSLKCIASGNPTPDIG-----WTL---------------DGFELPTNNRFV 50
Q V++ C + +I W + +
Sbjct: 12 TQITPLNDNVTIFCNIFYSQPLNITSMGITWFWKSLTFDKEVKVFEFFGDHQEAFRPGAI 71
Query: 51 IGQFVSGHGDVISHVNISHVTVEDGGEYACV 81
+ + GD + + + +E+ GEY C
Sbjct: 72 VSPWRLKSGDA--SLRLPGIQLEEAGEYRCE 100
>3rbg_A Cytotoxic and regulatory T-cell molecule; IGV, crtam, structural
genomics, PSI-biology, NEW YORK struc genomics research
consortium, nysgrc; 2.30A {Homo sapiens}
Length = 124
Score = 45.4 bits (107), Expect = 2e-06
Identities = 17/88 (19%), Positives = 37/88 (42%), Gaps = 12/88 (13%)
Query: 3 PILTYSFIEQTLQPGPAVSLKCIASGNPTPDIGW--------TLDGFELPTNNRFVIGQF 54
LT T++ G ++LKC+ S + W L+ + + N+++ +
Sbjct: 2 GSLTNHTETITVEEGQTLTLKCVTSLRKNSSLQWLTPSGFTIFLNEYPVLKNSKYQLLHH 61
Query: 55 VSGHGDVISHVNISHVTVEDGGEYACVA 82
+ + + +VT++D G Y C+
Sbjct: 62 SANQL----SITVPNVTLQDEGVYKCLH 85
Score = 41.5 bits (97), Expect = 4e-05
Identities = 16/122 (13%), Positives = 39/122 (31%), Gaps = 33/122 (27%)
Query: 164 VTAIDGEGLSIKCPVAGYPIEEVHWEKVPPKIESFAFPFDGLPEGARTRVICGVTHGDPP 223
+T +G+ L++KC + + W I +
Sbjct: 11 ITVEEGQTLTLKCVTSLRKNSSLQWLTP------------------SGFTIFLNEY---- 48
Query: 224 LTIRWLKDGKPLSPRFPVNVSDLDSFSSLLSINSVSAAHSGEYTCVASNTAAQARYSSKL 283
LK+ ++ + + S +++ +V+ G Y C+ + + + K+
Sbjct: 49 ---PVLKN-----SKYQLLHHSANQLS--ITVPNVTLQDEGVYKCLH-YSDSVSTKEVKV 97
Query: 284 QV 285
V
Sbjct: 98 IV 99
Score = 33.0 bits (75), Expect = 0.028
Identities = 8/66 (12%), Positives = 17/66 (25%), Gaps = 19/66 (28%)
Query: 88 TCEITPYDSGPYLIAWFKDGRQI----------PGRTSST-------SLVINPVGREDRG 130
C + + W + S+ + V +D G
Sbjct: 22 KCVTS--LRKNSSLQWLTPSGFTIFLNEYPVLKNSKYQLLHHSANQLSITVPNVTLQDEG 79
Query: 131 IYQCIA 136
+Y+C+
Sbjct: 80 VYKCLH 85
>1gsm_A Madcam-1, mucosal addressin cell adhesion molecule-1; cell adhesion
protein, immunoglobulin fold, I-SET fold, cell adhesion
glycoprotein; 1.9A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4
PDB: 1bqs_A*
Length = 210
Score = 46.4 bits (109), Expect = 2e-06
Identities = 16/81 (19%), Positives = 34/81 (41%), Gaps = 6/81 (7%)
Query: 205 LPEGARTRVICGVTHGDPPLTIRWLKDGKPLSPRFPVNVSDLDSFSSLLSINSVSAAHSG 264
+ GA ++ C + D +++W L D+ S+L++ + S + +G
Sbjct: 19 VALGASRQLTCRLACADRGASVQWRGLDTSLG------AVQSDTGRSVLTVRNASLSAAG 72
Query: 265 EYTCVASNTAAQARYSSKLQV 285
CV S +++ +L V
Sbjct: 73 TRVCVGSCGGRTFQHTVQLLV 93
Score = 37.6 bits (86), Expect = 0.002
Identities = 10/81 (12%), Positives = 21/81 (25%), Gaps = 11/81 (13%)
Query: 11 EQTLQPGPAVSLKCIASG-NPTPDIGWTLDGFELPTNNRFVIGQFVSGHGDVISHVNISH 69
+ G + L C + + + W L S + + +
Sbjct: 16 VVAVALGASRQLTCRLACADRGASVQWRGLDTSLGAV----------QSDTGRSVLTVRN 65
Query: 70 VTVEDGGEYACVAENRAGTCE 90
++ G CV T +
Sbjct: 66 ASLSAAGTRVCVGSCGGRTFQ 86
Score = 37.6 bits (86), Expect = 0.002
Identities = 17/106 (16%), Positives = 31/106 (29%), Gaps = 7/106 (6%)
Query: 88 TCEITPYDSGPYLIAWFKDGRQIPGRTSST---SLVINPVGREDRGIYQCIARRSDGDVA 144
TC + D G + W + S T L + G C+ G
Sbjct: 28 TCRLACADRGAS-VQWRGLDTSLGAVQSDTGRSVLTVRNASLSAAGTRVCVG-SCGGRTF 85
Query: 145 QGSAELQLGGLPYVRLIPKVTAIDGEGLSIKCPVAG-YPIEEVHWE 189
Q + +L + P + + G+ + C P++
Sbjct: 86 QHTVQLLVYAFPNQLTVSPAALVPGD-PEVACTAHKVTPVDPNALS 130
>1mq8_A ICAM-1, intercellular adhesion molecule-1, CD54 antigen; IG
superfamily, rossmann fold, metal mediated protein
interf immune system; HET: NAG; 3.30A {Homo sapiens}
SCOP: b.1.1.3 b.1.1.4
Length = 291
Score = 46.4 bits (109), Expect = 4e-06
Identities = 32/319 (10%), Positives = 78/319 (24%), Gaps = 90/319 (28%)
Query: 11 EQTLQPGPAVSLKCIASGNPTPDIGWTLDGFELPTNNRFVIGQFVSGHGDVISHVNISHV 70
+ L G +V + C S + +G + + + G+ +S+V
Sbjct: 8 KVILPRGGSVLVTCSTSCDQPKLLGI----------ETPLPKKELLLPGNNRKVYELSNV 57
Query: 71 TVEDGGEYACVAENRAGTC---------------EITPYDSGPYL--------------- 100
+ + C + G E+ P S +
Sbjct: 58 Q--EDSQPMCYSNCPDGQSTAKTFLTVYWTPERVELAPLPSWQPVGKNLTLRCQVEGGAP 115
Query: 101 -----IAWFKDGRQIPGRT-----SSTSLVINPVGREDRGIYQCIARRSDGDVAQGSAEL 150
+ + +++ + + + + C
Sbjct: 116 RANLTVVLLRGEKELKREPAVGEPAEVTTTVLVRRDHHGANFSCRTELD----------- 164
Query: 151 QLGGLPYVRLIPKVTAIDGEGLSIKCPVAGYPIEEVHWE-KVPPKIESFAFPFDGLPEGA 209
+ +GL + + + PP++ S L
Sbjct: 165 ----------------LRPQGLELFENTSAPYQLQTFVLPATPPQLVSPRV----LEVDT 204
Query: 210 RTRVICGVTHGDPP---LTIRWLKDGKPLSPRFPVNVSDLDSFSSLLSINSVSAAHSGEY 266
+ V+C + G P + + L+P +D S + +S+ + +
Sbjct: 205 QGTVVCSL-DGLFPVSEAQVHLALGDQRLNP-TVTYGNDSFSAKASVSV-TAEDEGTQRL 261
Query: 267 TCVASNTAAQARYSSKLQV 285
TC + +
Sbjct: 262 TCAVILGNQSQETLQTVTI 280
Score = 37.9 bits (87), Expect = 0.002
Identities = 18/88 (20%), Positives = 25/88 (28%), Gaps = 10/88 (11%)
Query: 1 TPPILTYSFIEQTLQPGPAVSLKCIASGN-PTPDIGWTLDGFELPTNNRFVIGQFVSGHG 59
TPP L + L+ ++ C G P + L + V+
Sbjct: 190 TPPQLVSP---RVLEVDTQGTVVCSLDGLFPVSEAQVHL------ALGDQRLNPTVTYGN 240
Query: 60 DVISHVNISHVTVEDGGEYACVAENRAG 87
D S VT ED G G
Sbjct: 241 DSFSAKASVSVTAEDEGTQRLTCAVILG 268
Score = 30.6 bits (68), Expect = 0.50
Identities = 11/90 (12%), Positives = 24/90 (26%), Gaps = 11/90 (12%)
Query: 2 PPILTYSFIEQTLQPGPAVSLKC-IASGNPTPD--IGWTLDGFELPTNNRFVIGQFVSGH 58
P + + + G ++L+C + G P + + EL +
Sbjct: 86 PERVELAPLPSWQPVGKNLTLRCQVEGGAPRANLTVVLLRGEKELKREP--------AVG 137
Query: 59 GDVISHVNISHVTVEDGGEYACVAENRAGT 88
+ G ++C E
Sbjct: 138 EPAEVTTTVLVRRDHHGANFSCRTELDLRP 167
>3p2t_A Leukocyte immunoglobulin-like receptor subfamily 4; LILR, IG,
inhibitory receptor, disulfide, immune system; 1.70A
{Homo sapiens}
Length = 196
Score = 45.2 bits (107), Expect = 5e-06
Identities = 26/194 (13%), Positives = 47/194 (24%), Gaps = 44/194 (22%)
Query: 95 DSGPYLIAWFKDGRQIP-------GRTSSTSLVINPVGREDRGIYQCIARRSDGDVAQGS 147
K+ P + I + + G Y+C R G S
Sbjct: 29 TLEAREYRLDKEESPAPWDRQNPLEPKNKARFSIPSMTEDYAGRYRCYYRSPVGWSQP-S 87
Query: 148 AELQLGGLPYVRLIPKVTAIDGEGLSIKCPVAGYPIEEVHWEKVPPKIESFAFPFDGLPE 207
L+L + P + A P +
Sbjct: 88 DPLEL--------------------------------VMTGAYSKPTL--SALPSPLVTS 113
Query: 208 GARTRVICGVTHGDPPLTIRWLKDGKPLSPRFPVNVSDLDSFSSLLSINSVSAAHSGEYT 267
G ++C P T K+ + + ++ V++ H G Y
Sbjct: 114 GKSVTLLCQS--RSPMDTFLLCKERAAHPLLCLRSEHGAQQHQAEFPMSPVTSVHGGTYR 171
Query: 268 CVASNTAAQARYSS 281
C +S+ + S
Sbjct: 172 CFSSHGFSHYLLSH 185
Score = 33.7 bits (77), Expect = 0.036
Identities = 17/117 (14%), Positives = 28/117 (23%), Gaps = 43/117 (36%)
Query: 67 ISHVTVEDGGEYACVAENRAGT--------CEITPYDSGPYLIA---------------- 102
I +T + G Y C + G +T S P L A
Sbjct: 62 IPSMTEDYAGRYRCYYRSPVGWSQPSDPLELVMTGAYSKPTLSALPSPLVTSGKSVTLLC 121
Query: 103 ----------WFKDGR---------QIPGRTSSTSLVINPVGREDRGIYQCIARRSD 140
K+ + + ++PV G Y+C +
Sbjct: 122 QSRSPMDTFLLCKERAAHPLLCLRSEHGAQQHQAEFPMSPVTSVHGGTYRCFSSHGF 178
Score = 31.7 bits (72), Expect = 0.14
Identities = 14/73 (19%), Positives = 27/73 (36%), Gaps = 6/73 (8%)
Query: 217 VT---HGDPPLTI-RWLKDGKPLSPRFPVNVSDLDSFSSLLSINSVSAAHSGEYTCVASN 272
VT G R K+ P + + + SI S++ ++G Y C +
Sbjct: 22 VTIWCQGTLEAREYRLDKEESPAPWDRQNPLEPKNK--ARFSIPSMTEDYAGRYRCYYRS 79
Query: 273 TAAQARYSSKLQV 285
++ S L++
Sbjct: 80 PVGWSQPSDPLEL 92
>1p6f_A NKP46, natural cytotoxicity triggering receptor 1; natural
cytotoxicity receptor, NK cell receptor, immunoglobulin
fold, immune system; 2.20A {Homo sapiens} SCOP: b.1.1.4
b.1.1.4
Length = 242
Score = 45.7 bits (108), Expect = 6e-06
Identities = 29/201 (14%), Positives = 45/201 (22%), Gaps = 52/201 (25%)
Query: 88 TCEITPYDSGPYLIAWFKDGRQIP-------GRTSSTSLVINPVGREDRGIYQCIARRSD 140
C+ G +G R + I + G Y CI R
Sbjct: 27 CCQGNY---GAVEYQLHFEGSLFAVDRPKPPERINKVKFYIPDMNSRMAGQYSCIYRVG- 82
Query: 141 GDVAQGSAELQLGGLPYVRLIPKVTAIDGEGLSIKCPVAGYPIEEVHWEKVPPKIESFAF 200
E S ++ V E S
Sbjct: 83 -----------------------------ELWSEPS----NLLDLVVTEMYDTPTLS-VH 108
Query: 201 PFDGLPEGARTRVICGVTHGDPPLTIRWLKDGKPLSPRFPVNVSDLDSFSSLLSINSVSA 260
P + G + C + LK+G+ + + + V+
Sbjct: 109 PGPEVISGEKVTFYCRL--DTATSMFLLLKEGRSSHVQ-----RGYGKVQAEFPLGPVTT 161
Query: 261 AHSGEYTCVASNTAAQARYSS 281
AH G Y C S + S
Sbjct: 162 AHRGTYRCFGSYNNHAWSFPS 182
Score = 39.9 bits (93), Expect = 4e-04
Identities = 25/166 (15%), Positives = 43/166 (25%), Gaps = 43/166 (25%)
Query: 67 ISHVTVEDGGEYACVAENRAGTCE--------ITPYDSGPYLIA---------------- 102
I + G+Y+C+ E +T P L
Sbjct: 64 IPDMNSRMAGQYSCIYRVGELWSEPSNLLDLVVTEMYDTPTLSVHPGPEVISGEKVTFYC 123
Query: 103 ----------WFKDGRQIPGRTSSTS----LVINPVGREDRGIYQCIARRSDGDVAQGSA 148
K+GR + + PV RG Y+C ++ + S
Sbjct: 124 RLDTATSMFLLLKEGRSSHVQRGYGKVQAEFPLGPVTTAHRGTYRCFGSYNNHAWSFPSE 183
Query: 149 ELQL---GGLPYVRLIP-KVTAIDGEGLSIKCPV-AGYPIEEVHWE 189
++L G + L P T + G + W+
Sbjct: 184 PVKLLVTGDIENTSLAPEDPTFPADTWGTYLLTTETGLQKDHALWD 229
Score = 36.8 bits (85), Expect = 0.004
Identities = 15/94 (15%), Positives = 36/94 (38%), Gaps = 6/94 (6%)
Query: 193 PKIESFAFPFDGLPEGARTRVICGVTHGDPPLTI-RWLKDGKPLSPRFPVNVSDLDSFSS 251
PK +A P +P+ + + C G+ + +G + P ++
Sbjct: 6 PKPFIWAEPHFMVPKEKQVTICC---QGNYGAVEYQLHFEGSLFAVDRPKPPERINKVK- 61
Query: 252 LLSINSVSAAHSGEYTCVASNTAAQARYSSKLQV 285
I +++ +G+Y+C+ + S+ L +
Sbjct: 62 -FYIPDMNSRMAGQYSCIYRVGELWSEPSNLLDL 94
Score = 26.8 bits (59), Expect = 8.2
Identities = 13/75 (17%), Positives = 16/75 (21%), Gaps = 10/75 (13%)
Query: 11 EQTLQPGPAVSLKCIASGNPTPDIGWTLDGFELPTNNRFVIGQFVSGHGDVISHVNISHV 70
+ G V+ C F L R Q G + V
Sbjct: 110 GPEVISGEKVTFYCRLDTAT--------SMFLLLKEGRSSHVQRGYGKVQAEFP--LGPV 159
Query: 71 TVEDGGEYACVAENR 85
T G Y C
Sbjct: 160 TTAHRGTYRCFGSYN 174
>2dru_A Chimera of CD48 antigen and T-cell surface antige; CD2 binding
domain of CD48, immune system; HET: NAG; 2.60A {Rattus
norvegicus}
Length = 180
Score = 44.5 bits (105), Expect = 9e-06
Identities = 24/195 (12%), Positives = 51/195 (26%), Gaps = 68/195 (34%)
Query: 94 YDSGPYLIAWFKDGRQIP------GR----TSSTSLVINPVGREDRGIYQCIARRSDGDV 143
+ + ++ +F +G++ R ++ +L I V +EDRG Y
Sbjct: 36 HTTNQKILEYFPNGKKTVFESVFKDRVDLDKTNGALRIYNVSKEDRGDYYMRM--LHETE 93
Query: 144 AQGSAELQLGGLPYVRLIPKVTAIDGEGLSIKCPVAGYPIEEVHWEKVPPKIESFAFPFD 203
Q +++ Y + P I
Sbjct: 94 DQWKITMEV----YEMV------------------------------SKPMIYW------ 113
Query: 204 GLPEGARTRVICGVTHGDPPLTIRWLKDGKPLSPRFPVNVSDLDSFSSLLSINSVSAAHS 263
E + + C V G ++ + + L +++
Sbjct: 114 ---ECSNATLTCEVLEGTDV-ELKLYQGKEHLRS------------LRQKTMSYQWTNLR 157
Query: 264 GEYTCVASNTAAQAR 278
+ C A N +Q
Sbjct: 158 APFKCKAVNRVSQES 172
Score = 39.9 bits (93), Expect = 3e-04
Identities = 13/98 (13%), Positives = 27/98 (27%), Gaps = 32/98 (32%)
Query: 67 ISHVTVEDGGEYACVAENRAG---------------------------TCEITPYDSGPY 99
I +V+ ED G+Y + TCE+ +
Sbjct: 73 IYNVSKEDRGDYYMRMLHETEDQWKITMEVYEMVSKPMIYWECSNATLTCEVL--EGTDV 130
Query: 100 LIAWFKDGRQIPGRTSSTSLVINPVGREDRGIYQCIAR 137
+ ++ + S ++ R ++C A
Sbjct: 131 ELKLYQGKEHL---RSLRQKTMSYQWTNLRAPFKCKAV 165
Score = 37.9 bits (88), Expect = 0.001
Identities = 8/68 (11%), Positives = 16/68 (23%), Gaps = 16/68 (23%)
Query: 20 VSLKCIASGNPTPDIGWTLDGFELPTNNRFVIGQFVSGHGDVISHVNISHVTVEDGGEYA 79
+L C ++ L + + +S+ +
Sbjct: 118 ATLTCEVLEGTDVELKLYQGKEHLRS----------------LRQKTMSYQWTNLRAPFK 161
Query: 80 CVAENRAG 87
C A NR
Sbjct: 162 CKAVNRVS 169
Score = 31.0 bits (70), Expect = 0.29
Identities = 12/69 (17%), Positives = 24/69 (34%), Gaps = 4/69 (5%)
Query: 219 HGDPPLTIRWLKDGKP--LSPRFPVNVSDLDSFSSLLSINSVSAAHSGEYTCVASNTAAQ 276
H + + +GK F V + +L I +VS G+Y +
Sbjct: 36 HTTNQKILEYFPNGKKTVFESVFKDRVDLDKTNGALR-IYNVSKEDRGDYYMRMLHETED 94
Query: 277 ARYSSKLQV 285
++ ++V
Sbjct: 95 -QWKITMEV 102
>2d3v_A Leukocyte immunoglobulin-like receptor subfamily A member 5 isoform
1; immunoglobulin-like fold, immune system; 1.85A {Homo
sapiens}
Length = 196
Score = 44.5 bits (105), Expect = 1e-05
Identities = 28/194 (14%), Positives = 46/194 (23%), Gaps = 48/194 (24%)
Query: 88 TCEITPYDSGPYLIAWFKDGRQIPGRT-------SSTSLVINPVGREDRGIYQCIARRSD 140
C+ T K+G P T + I + G Y+C
Sbjct: 25 RCQGTL---EAQEYRLVKEGSPEPWDTQNPLEPKNKARFSIPSMTEHHAGRYRCYYYSPA 81
Query: 141 GDVAQGSAELQLGGLPYVRLIPKVTAIDGEGLSIKCPVAGYPIEEVHWEKVPPKIESFAF 200
G ++ S L+L V P + A
Sbjct: 82 G-WSEPSDPLEL--------------------------------VVTGFYNKPTLS--AL 106
Query: 201 PFDGLPEGARTRVICGVTHGDPPLTIRWLKDGKPLSPRFPVNVSDLD-SFSSLLSINSVS 259
P + G + CG ++G + F +L + V+
Sbjct: 107 PSPVVTSGENVTLQCGS--RLRFDRFILTEEGDHKLSWTLDSQLTPSGQFQALFPVGPVT 164
Query: 260 AAHSGEYTCVASNT 273
+H C S
Sbjct: 165 PSHRWMLRCYGSRR 178
Score = 34.1 bits (78), Expect = 0.028
Identities = 26/174 (14%), Positives = 46/174 (26%), Gaps = 51/174 (29%)
Query: 12 QTLQPGPAVSLKCIASGNPTPDIGWTLDGFELPTNNRFVIGQFVSGHGDVISHVNISHVT 71
+ G +V+++C + + +G P + + + S I +T
Sbjct: 14 SVISRGNSVTIRCQGT-LEAQEYRLVKEGSPEPWDTQ---NPLEPKNKARFS---IPSMT 66
Query: 72 VEDGGEYACVAENRAGTCE--------ITPYDSGPYLIA--------------------- 102
G Y C + AG E +T + + P L A
Sbjct: 67 EHHAGRYRCYYYSPAGWSEPSDPLELVVTGFYNKPTLSALPSPVVTSGENVTLQCGSRLR 126
Query: 103 ---------------WFKDGRQIPGRTSSTSLVINPVGREDRGIYQCIARRSDG 141
W D + P + PV R + +C R
Sbjct: 127 FDRFILTEEGDHKLSWTLDSQLTPSGQFQALFPVGPVTPSHRWMLRCYGSRRHI 180
Score = 32.5 bits (74), Expect = 0.095
Identities = 20/94 (21%), Positives = 32/94 (34%), Gaps = 6/94 (6%)
Query: 193 PKIESFAFPFDGLPEGARTRVICGVTHGDPPLTIRWL-KDGKPLSPRFPVNVSDLDSFSS 251
K +A P + G + C G L K+G P +
Sbjct: 4 SKATLWAEPGSVISRGNSVTIRC---QGTLEAQEYRLVKEGSPEPWDT--QNPLEPKNKA 58
Query: 252 LLSINSVSAAHSGEYTCVASNTAAQARYSSKLQV 285
SI S++ H+G Y C + A + S L++
Sbjct: 59 RFSIPSMTEHHAGRYRCYYYSPAGWSEPSDPLEL 92
Score = 26.8 bits (59), Expect = 6.4
Identities = 12/75 (16%), Positives = 24/75 (32%), Gaps = 4/75 (5%)
Query: 11 EQTLQPGPAVSLKCIASGNPTPDIGWTLDGFELPTNNRFVIGQFVSGHGDVISHVNISHV 70
+ G V+L+C + I T +G + + + ++ G + + V
Sbjct: 108 SPVVTSGENVTLQCGSRLRFDRFI-LTEEGDHKLS---WTLDSQLTPSGQFQALFPVGPV 163
Query: 71 TVEDGGEYACVAENR 85
T C R
Sbjct: 164 TPSHRWMLRCYGSRR 178
>1oll_A NK receptor; immune system/receptor, NK cell triggering receptor,
immune system, IG domain, cytotoxicity, C2-type IG-like
domains; 1.93A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4
Length = 188
Score = 44.0 bits (104), Expect = 1e-05
Identities = 28/193 (14%), Positives = 45/193 (23%), Gaps = 52/193 (26%)
Query: 88 TCEITPYDSGPYLIAWFKDGRQIP-------GRTSSTSLVINPVGREDRGIYQCIARRSD 140
C+ G +G R + I + G Y CI R +
Sbjct: 24 CCQGNY---GAVEYQLHFEGSLFAVDRPKPPERINKVKFYIPDMNSRMAGQYSCIYRVGE 80
Query: 141 GDVAQGSAELQLGGLPYVRLIPKVTAIDGEGLSIKCPVAGYPIEEVHWEKVPPKIESFAF 200
++ S L L V P +
Sbjct: 81 L-WSEPSNLLDL--------------------------------VVTEMYDTPTLS--VH 105
Query: 201 PFDGLPEGARTRVICGVTHGDPPLTIRWLKDGKPLSPRFPVNVSDLDSFSSLLSINSVSA 260
P + G + C + LK+G+ + + + V+
Sbjct: 106 PGPEVISGEKVTFYCRL--DTATSMFLLLKEGRSSHVQ-----RGYGKVQAEFPLGPVTT 158
Query: 261 AHSGEYTCVASNT 273
AH G Y C S
Sbjct: 159 AHRGTYRCFGSYN 171
Score = 37.1 bits (86), Expect = 0.002
Identities = 15/94 (15%), Positives = 36/94 (38%), Gaps = 6/94 (6%)
Query: 193 PKIESFAFPFDGLPEGARTRVICGVTHGDPPL-TIRWLKDGKPLSPRFPVNVSDLDSFSS 251
PK +A P +P+ + + C G+ + +G + P ++
Sbjct: 3 PKPFIWAEPHFMVPKEKQVTICC---QGNYGAVEYQLHFEGSLFAVDRPKPPERINKVK- 58
Query: 252 LLSINSVSAAHSGEYTCVASNTAAQARYSSKLQV 285
I +++ +G+Y+C+ + S+ L +
Sbjct: 59 -FYIPDMNSRMAGQYSCIYRVGELWSEPSNLLDL 91
Score = 35.2 bits (81), Expect = 0.012
Identities = 19/124 (15%), Positives = 33/124 (26%), Gaps = 38/124 (30%)
Query: 67 ISHVTVEDGGEYACVAENRAGTCE--------ITPYDSGPYLIA---------------- 102
I + G+Y+C+ E +T P L
Sbjct: 61 IPDMNSRMAGQYSCIYRVGELWSEPSNLLDLVVTEMYDTPTLSVHPGPEVISGEKVTFYC 120
Query: 103 ----------WFKDGRQIPGRTSSTS----LVINPVGREDRGIYQCIARRSDGDVAQGSA 148
K+GR + + PV RG Y+C ++ + S
Sbjct: 121 RLDTATSMFLLLKEGRSSHVQRGYGKVQAEFPLGPVTTAHRGTYRCFGSYNNHAWSFPSE 180
Query: 149 ELQL 152
++L
Sbjct: 181 PVKL 184
Score = 27.5 bits (61), Expect = 4.5
Identities = 13/75 (17%), Positives = 16/75 (21%), Gaps = 10/75 (13%)
Query: 11 EQTLQPGPAVSLKCIASGNPTPDIGWTLDGFELPTNNRFVIGQFVSGHGDVISHVNISHV 70
+ G V+ C F L R Q G + V
Sbjct: 107 GPEVISGEKVTFYCRLDTAT--------SMFLLLKEGRSSHVQRGYGKVQAEFP--LGPV 156
Query: 71 TVEDGGEYACVAENR 85
T G Y C
Sbjct: 157 TTAHRGTYRCFGSYN 171
>1b6u_A KIR2DL3, P58 killer cell inhibitory receptor; natural killer cell,
HLA, major histocompatibility complex class I (MHC class
I); 3.00A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4
Length = 257
Score = 44.6 bits (105), Expect = 1e-05
Identities = 25/197 (12%), Positives = 48/197 (24%), Gaps = 49/197 (24%)
Query: 95 DSGPYLIAWFKDGRQIP---------GRTSSTSLVINPVGREDRGIYQCIARRSDGDVA- 144
D ++G+ S + I P+ ++ G Y+C +
Sbjct: 31 DVRFQHFLLHREGKFKDTLHLIGEHHDGVSKANFSIGPMMQDLAGTYRCYGSVTHSPYQL 90
Query: 145 -QGSAELQLGGLPYVRLIPKVTAIDGEGLSIKCPVAGYPIEEVHWEKVPPKIESFAFPFD 203
S L + + P + A P
Sbjct: 91 SAPSDPLDI--------------------------------VITGLYEKPSLS--AQPGP 116
Query: 204 GLPEGARTRVICGVTHGDPPLTIRWLKDGKPLSPRFPVNVSDLDSFSSLLSINSVSAAHS 263
+ G + C ++G+ RF +F + + + H
Sbjct: 117 TVLAGESVTLSCSS--RSSYDMYHLSREGEAHERRFSAGPKVNGTFQADFPLGPAT--HG 172
Query: 264 GEYTCVASNTAAQARYS 280
G Y C S + +S
Sbjct: 173 GTYRCFGSFRDSPYEWS 189
Score = 39.2 bits (91), Expect = 8e-04
Identities = 11/65 (16%), Positives = 20/65 (30%), Gaps = 1/65 (1%)
Query: 219 HGDPPL-TIRWLKDGKPLSPRFPVNVSDLDSFSSLLSINSVSAAHSGEYTCVASNTAAQA 277
D ++GK + + SI + +G Y C S T +
Sbjct: 29 WSDVRFQHFLLHREGKFKDTLHLIGEHHDGVSKANFSIGPMMQDLAGTYRCYGSVTHSPY 88
Query: 278 RYSSK 282
+ S+
Sbjct: 89 QLSAP 93
>1ccz_A Protein (CD58); LFA-3, glycoprotein; HET: NAG; 1.80A {Homo sapiens}
SCOP: b.1.1.1 b.1.1.3 PDB: 1ci5_A 1qa9_B
Length = 171
Score = 43.8 bits (103), Expect = 1e-05
Identities = 22/181 (12%), Positives = 44/181 (24%), Gaps = 61/181 (33%)
Query: 94 YDSGPYLIAWFKDGRQIPGRTSSTSLVINPVGREDRGIYQCIARRSDGDVAQGSAELQLG 153
+S + FK+ + T S SL I + D Y+ + + + L
Sbjct: 39 ENSEFRAFSSFKNRVYLD--TVSGSLTIYNLTSSDEDEYEMESPNITD-----TMKFFL- 90
Query: 154 GLPYVRLIPKVTAIDGEGLSIKCPVAGYPIEEVHWEKVPPKIESFAFPFDGLPEGARTRV 213
++ V+ P I E + +
Sbjct: 91 -----YVLEMVS--------------------------KPMIYW---------ECSNATL 110
Query: 214 ICGVTHGDPPLTIRWLKDGKPLSPRFPVNVSDLDSFSSLLSINSVSAAHSGEYTCVASNT 273
C V G ++ + + L +++ + C A N
Sbjct: 111 TCEVLEGTDV-ELKLYQGKEHLRS------------LRQKTMSYQWTNLRAPFKCKAVNR 157
Query: 274 A 274
Sbjct: 158 V 158
Score = 43.0 bits (101), Expect = 2e-05
Identities = 19/144 (13%), Positives = 37/144 (25%), Gaps = 36/144 (25%)
Query: 25 IASGNPTPDIGWTLDGFELPTNNRFVIGQFVSGHGDVISHVN-----ISHVTVEDGGEYA 79
+ S P ++ W ++ F S V I ++T D EY
Sbjct: 17 VPSNVPLKEVLWKKQKDKVAELENSEFRAFSSFKNRVYLDTVSGSLTIYNLTSSDEDEYE 76
Query: 80 CVAENRAG--------------------------TCEITPYDSGPYLIAWFKDGRQIPGR 113
+ N TCE+ + + ++ +
Sbjct: 77 MESPNITDTMKFFLYVLEMVSKPMIYWECSNATLTCEVL--EGTDVELKLYQGKEHL--- 131
Query: 114 TSSTSLVINPVGREDRGIYQCIAR 137
S ++ R ++C A
Sbjct: 132 RSLRQKTMSYQWTNLRAPFKCKAV 155
Score = 36.1 bits (83), Expect = 0.005
Identities = 13/78 (16%), Positives = 26/78 (33%), Gaps = 11/78 (14%)
Query: 217 VTHGDPPLTIRWLKDGKPLSPRFPVNVSDLDSFSS---------LLSINSVSAAHSGEYT 267
V P + W K ++ SF + L+I +++++ EY
Sbjct: 17 VPSNVPLKEVLWKKQKDKVAELENSEFRAFSSFKNRVYLDTVSGSLTIYNLTSSDEDEYE 76
Query: 268 CVASNTAAQARYSSKLQV 285
+ N ++ L V
Sbjct: 77 MESPNITDTMKFF--LYV 92
Score = 32.6 bits (74), Expect = 0.072
Identities = 8/68 (11%), Positives = 16/68 (23%), Gaps = 16/68 (23%)
Query: 20 VSLKCIASGNPTPDIGWTLDGFELPTNNRFVIGQFVSGHGDVISHVNISHVTVEDGGEYA 79
+L C ++ L + + +S+ +
Sbjct: 108 ATLTCEVLEGTDVELKLYQGKEHLRS----------------LRQKTMSYQWTNLRAPFK 151
Query: 80 CVAENRAG 87
C A NR
Sbjct: 152 CKAVNRVS 159
>1uct_A Immunoglobulin alpha FC receptor; beta stands, immune system; 2.10A
{Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1ovz_A*
1ow0_C*
Length = 218
Score = 44.1 bits (104), Expect = 2e-05
Identities = 32/183 (17%), Positives = 54/183 (29%), Gaps = 50/183 (27%)
Query: 103 WFKDGRQIPGRTSST-SLVINPVGREDRGIYQCIARRSDGDVA-QGSAELQLGGL---PY 157
+ + GR++ + VI+ + G YQC R + EL + GL P+
Sbjct: 49 YREIGRRLKFWNETDPEFVIDHMDANKAGRYQCQYRIGHYRFRYSDTLELVVTGLYGKPF 108
Query: 158 VRLIPKVTAIDGEGLSIKCPVAGYPIEEVHWEKVPPKIESFAFPFDGLPEGARTRVICGV 217
+ + + GE +S+ C S PFD
Sbjct: 109 LSADRGLVLMPGENISLTC-------------------SSAHIPFD-------------- 135
Query: 218 THGDPPLTIRWLKDGKPLSPRFPVNVSDLDSFSSLLSINSVSAAHSGEYTCVASNTAAQA 277
K+G+ P+ + S+ V SG Y C +
Sbjct: 136 -------RFSLAKEGELSLPQHQSG-----EHPANFSLGPVDLNVSGIYRCYGWYNRSPY 183
Query: 278 RYS 280
+S
Sbjct: 184 LWS 186
Score = 42.6 bits (100), Expect = 5e-05
Identities = 14/93 (15%), Positives = 28/93 (30%), Gaps = 2/93 (2%)
Query: 193 PKIESFAFPFDGLPEGARTRVICGVTHGDPPLTIRWLKDGKPLSPRFPVNVSDLDSFSSL 252
P A +P ++ C + +K+ + +
Sbjct: 8 PMPFISAKSSPVIPLDGSVKIQCQAIREAYLTQLMIIKNSTYREIGRRLKFWNETDPE-- 65
Query: 253 LSINSVSAAHSGEYTCVASNTAAQARYSSKLQV 285
I+ + A +G Y C + RYS L++
Sbjct: 66 FVIDHMDANKAGRYQCQYRIGHYRFRYSDTLEL 98
Score = 37.5 bits (87), Expect = 0.002
Identities = 18/114 (15%), Positives = 27/114 (23%), Gaps = 39/114 (34%)
Query: 67 ISHVTVEDGGEYACVAENRAG--------TCEITPYDSGPYLIA---------------- 102
I H+ G Y C +T P+L A
Sbjct: 68 IDHMDANKAGRYQCQYRIGHYRFRYSDTLELVVTGLYGKPFLSADRGLVLMPGENISLTC 127
Query: 103 -----------WFKDGRQIPGRTSS----TSLVINPVGREDRGIYQCIARRSDG 141
K+G + S + + PV GIY+C +
Sbjct: 128 SSAHIPFDRFSLAKEGELSLPQHQSGEHPANFSLGPVDLNVSGIYRCYGWYNRS 181
Score = 29.5 bits (66), Expect = 1.0
Identities = 17/84 (20%), Positives = 25/84 (29%), Gaps = 10/84 (11%)
Query: 2 PPILTYSFIEQTLQPGPAVSLKCIASGNPTPDIGWTLDGFELPTNNRFVIGQFVSGHGDV 61
P L+ L PG +SL C ++ P +G + Q SG
Sbjct: 106 KPFLSADR-GLVLMPGENISLTCSSAHIPFDRFSLAKEG-------ELSLPQHQSGEHPA 157
Query: 62 ISHVNISHVTVEDGGEYACVAENR 85
+ V + G Y C
Sbjct: 158 NFS--LGPVDLNVSGIYRCYGWYN 179
>1nkr_A P58-CL42 KIR; inhibitory receptor, natural killer cells,
immunological receptors, immunoglobulin fold; 1.70A
{Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1m4k_A 1efx_D
2dli_A 2dl2_A 3h8n_A
Length = 201
Score = 43.4 bits (102), Expect = 2e-05
Identities = 24/197 (12%), Positives = 47/197 (23%), Gaps = 49/197 (24%)
Query: 95 DSGPYLIAWFKDGRQIP---------GRTSSTSLVINPVGREDRGIYQCIARRSDGDVA- 144
D ++G S + I+ + ++ G Y+C +
Sbjct: 32 DVMFEHFLLHREGMFNDTLRLIGEHHDGVSKANFSISRMTQDLAGTYRCYGSVTHSPYQV 91
Query: 145 -QGSAELQLGGLPYVRLIPKVTAIDGEGLSIKCPVAGYPIEEVHWEKVPPKIESFAFPFD 203
S L + + + K A P
Sbjct: 92 SAPSDPLDI----------VIIGL------------------------YEKPSLSAQPGP 117
Query: 204 GLPEGARTRVICGVTHGDPPLTIRWLKDGKPLSPRFPVNVSDLDSFSSLLSINSVSAAHS 263
+ G + C ++G+ R P +F + + + H
Sbjct: 118 TVLAGENVTLSCSSR--SSYDMYHLSREGEAHERRLPAGPKVNGTFQADFPLGPAT--HG 173
Query: 264 GEYTCVASNTAAQARYS 280
G Y C S + +S
Sbjct: 174 GTYRCFGSFHDSPYEWS 190
Score = 41.4 bits (97), Expect = 1e-04
Identities = 14/85 (16%), Positives = 27/85 (31%), Gaps = 4/85 (4%)
Query: 199 AFPFDGLPEGARTRVICGVTHGDPPLTIRWL-KDGKPLSPRFPVNVSDLDSFSSLLSINS 257
A P + + C D L ++G + + SI+
Sbjct: 13 AHPGPLVKSEETVILQC---WSDVMFEHFLLHREGMFNDTLRLIGEHHDGVSKANFSISR 69
Query: 258 VSAAHSGEYTCVASNTAAQARYSSK 282
++ +G Y C S T + + S+
Sbjct: 70 MTQDLAGTYRCYGSVTHSPYQVSAP 94
>3bn3_B ICAM-5, intercellular adhesion molecule 5, telencephalin; I domain,
integrin, allosteric mobility, cell adhesi immune
system; HET: NAG; 2.10A {Homo sapiens}
Length = 196
Score = 42.8 bits (100), Expect = 4e-05
Identities = 15/84 (17%), Positives = 24/84 (28%), Gaps = 3/84 (3%)
Query: 192 PPKIESFAFPFDGLPEGARTRVICGVTHGDPP--LTIRWLKDGKPLSPR-FPVNVSDLDS 248
P P G + C V P LT+ L+ + L R F
Sbjct: 88 RPDRVELMPLPPWQPVGENFTLSCRVPGAGPRASLTLTLLRGAQELIRRSFAGEPPRARG 147
Query: 249 FSSLLSINSVSAAHSGEYTCVASN 272
++ + H ++C A
Sbjct: 148 AVLTATVLARREDHGANFSCRAEL 171
Score = 33.9 bits (77), Expect = 0.036
Identities = 17/172 (9%), Positives = 37/172 (21%), Gaps = 57/172 (33%)
Query: 11 EQTLQPGPAVSLKCIASGNPTPDIGWTLDGFELPTNNRFVIGQFVSGHGDVISHVNISHV 70
++ G ++ L C + G + + + G + +
Sbjct: 11 VAFVERGGSLWLNCSTNCPRPERGGL-----------ETSLRRNGTQRGLRWLARQLVDI 59
Query: 71 TVEDGGEYACVAENRAGTC---------------EITPYDS------------------- 96
E + C T E+ P
Sbjct: 60 R-EPETQPVCFFRCARRTLQARGLIRTFQRPDRVELMPLPPWQPVGENFTLSCRVPGAGP 118
Query: 97 -GPYLIAWFKDGRQIPGRT---------SSTSLVINPVGREDRG-IYQCIAR 137
+ + +++ R+ + RED G + C A
Sbjct: 119 RASLTLTLLRGAQELIRRSFAGEPPRARGAVLTATVLARREDHGANFSCRAE 170
Score = 31.6 bits (71), Expect = 0.19
Identities = 12/86 (13%), Positives = 22/86 (25%), Gaps = 6/86 (6%)
Query: 2 PPILTYSFIEQTLQPGPAVSLKCIASG-NPTPD--IGWTLDGFELPTNNRFVIGQFVSGH 58
P + + G +L C G P + EL +
Sbjct: 89 PDRVELMPLPPWQPVGENFTLSCRVPGAGPRASLTLTLLRGAQELIRRS---FAGEPPRA 145
Query: 59 GDVISHVNISHVTVEDGGEYACVAEN 84
+ + + G ++C AE
Sbjct: 146 RGAVLTATVLARREDHGANFSCRAEL 171
Score = 28.9 bits (64), Expect = 1.4
Identities = 4/82 (4%), Positives = 13/82 (15%), Gaps = 11/82 (13%)
Query: 205 LPEGARTRVICGVTHGDPP-LTIRWLKDGKPLSPRFPVNVSDLDSFSSLLSINSVSAAHS 263
+ G + C P + + +
Sbjct: 14 VERGGSLWLNCSTNCPRPERGGLETSLRRNGTQR---------GLRWLARQLVDIRE-PE 63
Query: 264 GEYTCVASNTAAQARYSSKLQV 285
+ C + ++
Sbjct: 64 TQPVCFFRCARRTLQARGLIRT 85
>3m45_A Cell adhesion molecule 2; IG fold, dimer, disulfide bond,
glycoprotein, immunoglobulin membrane, transmembrane;
HET: NAG; 2.21A {Mus musculus}
Length = 108
Score = 41.0 bits (96), Expect = 4e-05
Identities = 12/72 (16%), Positives = 25/72 (34%), Gaps = 4/72 (5%)
Query: 13 TLQPGPAVSLKCIASGNPTPDIGWTLDGFELPTNNRFVIGQF----VSGHGDVISHVNIS 68
T+ G L C N + W+ + + + + +++S
Sbjct: 17 TVVEGGTAILTCRVDQNDNTSLQWSNPAQQTLYFDDKKALRDNRIELVRASWHELSISVS 76
Query: 69 HVTVEDGGEYAC 80
V++ D G+Y C
Sbjct: 77 DVSLSDEGQYTC 88
Score = 34.1 bits (78), Expect = 0.010
Identities = 19/122 (15%), Positives = 33/122 (27%), Gaps = 33/122 (27%)
Query: 164 VTAIDGEGLSIKCPVAGYPIEEVHWEKVPPKIESFAFPFDGLPEGARTRVICGVTHGDPP 223
VT ++G + C V + W + + D
Sbjct: 16 VTVVEGGTAILTCRVDQNDNTSLQWSNPAQQT---------------------LYFDDKK 54
Query: 224 LTIRWLKDGKPLSPRFPVNVSDLDSFSSLLSINSVSAAHSGEYTCVASNTAAQARYSSKL 283
R + + S +S++ VS + G+YTC T + L
Sbjct: 55 AL---------RDNRIELVRASWHELS--ISVSDVSLSDEGQYTCSL-FTMPVKTSKAYL 102
Query: 284 QV 285
V
Sbjct: 103 TV 104
Score = 33.7 bits (77), Expect = 0.015
Identities = 11/64 (17%), Positives = 18/64 (28%), Gaps = 19/64 (29%)
Query: 88 TCEITPYDSGPYLIAWFKDGRQI----------PGRTSST-------SLVINPVGREDRG 130
TC + + + W +Q R S+ ++ V D G
Sbjct: 27 TCRVD--QNDNTSLQWSNPAQQTLYFDDKKALRDNRIELVRASWHELSISVSDVSLSDEG 84
Query: 131 IYQC 134
Y C
Sbjct: 85 QYTC 88
>2rcj_C Light chain; immunoglobulin M, polymeric antibodies, immunology,
X-RAY solution scattering, constrained modelling, immune
system; NMR {Homo sapiens}
Length = 523
Score = 42.1 bits (99), Expect = 1e-04
Identities = 49/295 (16%), Positives = 83/295 (28%), Gaps = 49/295 (16%)
Query: 15 QPGPAVSLKCIASG-NPTP-DIGWTLDGFELPTNNR-FVIGQFVSGHGDVISHVNISHVT 71
+L C+ S P + W DG + + + S+++++
Sbjct: 127 LQANKATLVCLISDFYPGAVTVAWKADGSPVKAGVETTKPSKQSNNKYAASSYLSLTPEQ 186
Query: 72 VEDGGEYACVAENRAGTCEITPYDSGPYLIAWFKDGRQIPGRTSSTSLVINPVGREDRGI 131
+ Y+C + T E T + T S+ +
Sbjct: 187 WKSHRSYSCQVTHEGSTVEKTVAPTEC------------SASTKGPSVFPLAPSSKSTSG 234
Query: 132 YQ----CIAR---------------RSDGDVAQGSAELQLGGLPYVRLIPKVTAIDGEGL 172
C+ + + G V A LQ GL + + V +
Sbjct: 235 GTAALGCLVKDYFPQPVTVSWNSGALTSG-VHTFPAVLQSSGLYSLSSVVTVPSSSLGTQ 293
Query: 173 SIKCPVAGYPIEEVHWEKVPPK---IESFAFP---FDGLPEGARTRVIC---GVTHGDPP 223
+ C V + +K F FP D L V C V+H DP
Sbjct: 294 TYICNVN-HKPSNTKVDKRVEPLSLPSVFLFPPKPKDTLMISRTPEVTCVVVDVSHEDPQ 352
Query: 224 LTIRWLKDGKPLSPRFPV----NVSDLDSFSSLLSINSVSAAHSGEYTCVASNTA 274
+ W DG + + S+L++ + EY C SN A
Sbjct: 353 VKFNWYVDGVQVHNAKTKPREQQYNSTYRVVSVLTVLHQNWLDGKEYKCKVSNKA 407
Score = 34.8 bits (80), Expect = 0.029
Identities = 35/212 (16%), Positives = 63/212 (29%), Gaps = 66/212 (31%)
Query: 94 YDSGPYLIAWFKDGRQIPGR-------------------------TSSTSLVINPVGRED 128
SG + W+ +Q+PG +S SL I+ + ED
Sbjct: 25 TSSGSITVNWY---QQLPGMAPKLLIYRDAMRPSGVPTRFSGSKSGTSASLAISGLEAED 81
Query: 129 RGIYQCIARRSDGDVAQGSAELQLGGLPYVRLIPKVTAIDGEGLSIKCPVAGYPIEEVHW 188
Y C + S + + + G G +
Sbjct: 82 ESDYYCASWNSSDN----------------------SYVFGTGTKVTVLGQ--------- 110
Query: 189 EKVPPKIESFAFPFDGLPEGARTRVICGVTHGDP-PLTIRWLKDGKPLSP---RFP--VN 242
K P + F + L T ++C ++ P +T+ W DG P+
Sbjct: 111 PKANPTVTLFPPSSEELQANKAT-LVCLISDFYPGAVTVAWKADGSPVKAGVETTKPSKQ 169
Query: 243 VSDLDSFSSLLSINSVSAAHSGEYTCVASNTA 274
++ + SS LS+ Y+C ++
Sbjct: 170 SNNKYAASSYLSLTPEQWKSHRSYSCQVTHEG 201
Score = 32.9 bits (75), Expect = 0.10
Identities = 18/79 (22%), Positives = 28/79 (35%), Gaps = 4/79 (5%)
Query: 12 QTLQPGPAVSLKCIASGNPTPD----IGWTLDGFELPTNNRFVIGQFVSGHGDVISHVNI 67
TL + C+ D W +DG ++ Q + V+S + +
Sbjct: 329 DTLMISRTPEVTCVVVDVSHEDPQVKFNWYVDGVQVHNAKTKPREQQYNSTYRVVSVLTV 388
Query: 68 SHVTVEDGGEYACVAENRA 86
H DG EY C N+A
Sbjct: 389 LHQNWLDGKEYKCKVSNKA 407
Score = 30.6 bits (69), Expect = 0.71
Identities = 29/215 (13%), Positives = 58/215 (26%), Gaps = 55/215 (25%)
Query: 88 TCEITPYDSGPYL--IAWFKDGRQIPGRTSST-------------SLVINPVGREDRGIY 132
TC + W+ DG Q+ + L + D Y
Sbjct: 340 TCVVVDVSHEDPQVKFNWYVDGVQVHNAKTKPREQQYNSTYRVVSVLTVLHQNWLDGKEY 399
Query: 133 QCIARRSDGDVAQGSAELQLGGLPYVRLIPKVTAIDGEGLSIKCPVAGYPIEEVHWEKVP 192
+C P + I K +
Sbjct: 400 KCKVSNKALPA------------PIEKTISKAKG----------------------QPRE 425
Query: 193 PKIESFAFPFDGLPEGARTRVICGVTHGDP-PLTIRWLKDGKPLSPR--FPVNVSDLDSF 249
P++ + + + + + + C V P + + W +G+P + P + SF
Sbjct: 426 PQVYTLPPSREEMTKNQVS-LTCLVKGFYPSDIAVEWESNGQPENNYKTTPPVLDSDGSF 484
Query: 250 --SSLLSINSVSAAHSGEYTCVASNTAAQARYSSK 282
S L+++ ++C + A Y+ K
Sbjct: 485 FLYSKLTVDKSRWQQGNVFSCSVMHEALHNHYTQK 519
>1z9m_A GAPA225; nectin-like, IG-like domain, V domain, cell adhesion;
2.40A {Homo sapiens}
Length = 145
Score = 39.4 bits (91), Expect = 3e-04
Identities = 15/79 (18%), Positives = 27/79 (34%), Gaps = 4/79 (5%)
Query: 12 QTLQPGPAVSLKCIASGNPTPDIGWTLDGFELPTNNRFVIGQF----VSGHGDVISHVNI 67
+T+ G V LKC + + W+ + + + ++I
Sbjct: 48 ETVVAGGTVVLKCQVKDHEDSSLQWSNPAQQTLYFGEKRALRDNRIQLVTSTPHELSISI 107
Query: 68 SHVTVEDGGEYACVAENRA 86
S+V + D GEY C
Sbjct: 108 SNVALADEGEYTCSIFTMP 126
Score = 34.0 bits (77), Expect = 0.021
Identities = 18/90 (20%), Positives = 29/90 (32%), Gaps = 14/90 (15%)
Query: 206 PEGARTRVICGVTHGDPPLTIRWLKDGKPL----------SPRFPVNVSDLDSFSSLLSI 255
G + C +++W + R + S S +SI
Sbjct: 51 VAGGTVVLKC-QVKDHEDSSLQWSNPAQQTLYFGEKRALRDNRIQLVTSTPHELS--ISI 107
Query: 256 NSVSAAHSGEYTCVASNTAAQARYSSKLQV 285
++V+ A GEYTC T S + V
Sbjct: 108 SNVALADEGEYTCSI-FTMPVRTAKSLVTV 136
Score = 30.5 bits (68), Expect = 0.28
Identities = 11/60 (18%), Positives = 15/60 (25%), Gaps = 17/60 (28%)
Query: 92 TPYDSGPYLIAWFKDGRQIP----------------GRTSST-SLVINPVGREDRGIYQC 134
D + W +Q T S+ I+ V D G Y C
Sbjct: 61 QVKDHEDSSLQWSNPAQQTLYFGEKRALRDNRIQLVTSTPHELSISISNVALADEGEYTC 120
>1igy_B IGG1 intact antibody MAB61.1.3; intact immunoglobulin, V region, C
region, hinge region, immunoglobulin; HET: NAG FUL NDG
BMA MAN GAL FUC; 3.20A {Mus musculus} SCOP: b.1.1.1
b.1.1.2 b.1.1.2 b.1.1.2
Length = 434
Score = 40.7 bits (95), Expect = 4e-04
Identities = 23/135 (17%), Positives = 39/135 (28%), Gaps = 24/135 (17%)
Query: 164 VTAIDGEGLSIKCPVAGYPIEEVHWEKVPPKIES--------------FAFP---FDGLP 206
V + ++ C VA +K+ P+ F FP D L
Sbjct: 184 VPSSPRPSETVTCNVAHPASSTKVDKKIVPRDCGCKPCICTVPEVSSVFIFPPKPKDTLL 243
Query: 207 EGARTRVIC---GVTHGDPPLTIRWLKDGKPLSPRFPV----NVSDLDSFSSLLSINSVS 259
+V C ++ DP + W D + + S L I
Sbjct: 244 ITVTPKVTCVVVDISKDDPEVQFSWFVDNVEVHTAQTQPREEQFNSTFRVVSALPIMHQD 303
Query: 260 AAHSGEYTCVASNTA 274
+ E+ C ++ A
Sbjct: 304 WLNGKEFKCRVNSAA 318
Score = 33.0 bits (75), Expect = 0.12
Identities = 18/89 (20%), Positives = 30/89 (33%), Gaps = 4/89 (4%)
Query: 12 QTLQPGPAVSLKCIASG----NPTPDIGWTLDGFELPTNNRFVIGQFVSGHGDVISHVNI 67
TL + C+ +P W +D E+ T + + V+S + I
Sbjct: 240 DTLLITVTPKVTCVVVDISKDDPEVQFSWFVDNVEVHTAQTQPREEQFNSTFRVVSALPI 299
Query: 68 SHVTVEDGGEYACVAENRAGTCEITPYDS 96
H +G E+ C + A I S
Sbjct: 300 MHQDWLNGKEFKCRVNSAAFPAPIEKTIS 328
Score = 32.2 bits (73), Expect = 0.20
Identities = 17/96 (17%), Positives = 38/96 (39%), Gaps = 6/96 (6%)
Query: 192 PPKIESFAFPFDGLPEGARTRVICGVTHGDP-PLTIRWLKDGKPLSPRFPVN-VSDLDSF 249
P++ + P + + + + + C +T P +T+ W DG+ + D D
Sbjct: 336 APQVYTIPPPKEQMAKDKVS-LTCMITDFFPEDITVEWQSDGQAPENYKNTQPIMDTDGS 394
Query: 250 SSLLSINSVSAA--HSGE-YTCVASNTAAQARYSSK 282
+ S +V + +G +TC + ++ K
Sbjct: 395 YFVYSKLNVQKSNWEAGNTFTCSVLHEGLHNHHTEK 430
Score = 30.7 bits (69), Expect = 0.55
Identities = 16/69 (23%), Positives = 22/69 (31%), Gaps = 2/69 (2%)
Query: 20 VSLKCIASGNPTPDIG--WTLDGFELPTNNRFVIGQFVSGHGDVISHVNISHVTVEDGGE 77
VSL C+ + DI W DG G V S +N+ E G
Sbjct: 354 VSLTCMITDFFPEDITVEWQSDGQAPENYKNTQPIMDTDGSYFVYSKLNVQKSNWEAGNT 413
Query: 78 YACVAENRA 86
+ C +
Sbjct: 414 FTCSVLHEG 422
>2w59_A IGY FCU3-4; immunoglobulin, avian, immune system; HET: NAG MAN;
1.75A {Gallus gallus}
Length = 231
Score = 40.0 bits (93), Expect = 4e-04
Identities = 21/148 (14%), Positives = 41/148 (27%), Gaps = 40/148 (27%)
Query: 14 LQPGPAVSLKCIASGNPTPD---IGWTLDGFELPTNNRFVIGQFVSGHGDVISHVNISHV 70
L L+C+ P+ + WT + + V+ + +G S V +S
Sbjct: 25 LYISLDAKLRCLVVNLPSDSSLSVTWTREKSGNLRPDPMVLQEHFNGTYSASSAVPVSTQ 84
Query: 71 TVEDGGEYACVAENRAG-------------------------------------TCEITP 93
G + C ++ +C +
Sbjct: 85 DWLSGERFTCTVQHEELPLPLSKSVYRNTGPTTPPLIYPFAPHPEELSLSRVTLSCLVRG 144
Query: 94 YDSGPYLIAWFKDGRQIPGRTSSTSLVI 121
+ I W +D R +P T+ V+
Sbjct: 145 FRPRDIEIRWLRDHRAVPATEFVTTAVL 172
Score = 32.7 bits (74), Expect = 0.097
Identities = 33/225 (14%), Positives = 63/225 (28%), Gaps = 65/225 (28%)
Query: 88 TCEITPYDS-GPYLIAWFKDG------------RQIPGRTSSTS-LVINPVGREDRGIYQ 133
C + S + W ++ G S++S + ++ +
Sbjct: 34 RCLVVNLPSDSSLSVTWTREKSGNLRPDPMVLQEHFNGTYSASSAVPVSTQDWLSGERFT 93
Query: 134 CIARRSDGDVAQGSAELQLGGLPYVRLIPKVTAIDGEGLSIKCPVAGYPIEEVHWEKVPP 193
C + + + P + + + T PP
Sbjct: 94 CTVQHEELPL------------PLSKSVYRNT----------------------GPTTPP 119
Query: 194 KIESFAFPFDGLPEGARTRVICGVTHGDPP-LTIRWLKDGKPLSPRFPVN---------- 242
I FA + L T + C V P + IRWL+D + + V
Sbjct: 120 LIYPFAPHPEELSLSRVT-LSCLVRGFRPRDIEIRWLRDHRAVPATEFVTTAVLPEERTA 178
Query: 243 -----VSDLDSFSSLLSINSVSAAHSGEYTCVASNTAAQARYSSK 282
D S +S+ + + C+A + A R+S +
Sbjct: 179 NGAGGDGDTFFVYSKMSVETAKWNGGTVFACMAVHEALPMRFSQR 223
Score = 28.1 bits (62), Expect = 3.4
Identities = 13/89 (14%), Positives = 29/89 (32%), Gaps = 13/89 (14%)
Query: 192 PPKIESFAFPFDGLPEGARTRVICGVTHGDPP--LTIRWLKDGKPLSPRFPVNVSDLD-- 247
PP L ++ C V + L++ W ++ P+ + +
Sbjct: 19 PPSPGE-------LYISLDAKLRCLVVNLPSDSSLSVTWTREKSGNLRPDPMVLQEHFNG 71
Query: 248 --SFSSLLSINSVSAAHSGEYTCVASNTA 274
S SS + +++ +TC +
Sbjct: 72 TYSASSAVPVSTQDWLSGERFTCTVQHEE 100
>1i1c_A IGG2A, IG gamma-2A chain C region; FC, immune system; HET: NAG FUL
BMA MAN FUC; 2.70A {Rattus norvegicus} SCOP: b.1.1.2
b.1.1.2 PDB: 1i1a_D*
Length = 239
Score = 39.9 bits (93), Expect = 5e-04
Identities = 13/80 (16%), Positives = 25/80 (31%), Gaps = 4/80 (5%)
Query: 11 EQTLQPGPAVSLKCIASGNPTPD----IGWTLDGFELPTNNRFVIGQFVSGHGDVISHVN 66
+ L G + C+ D W +D E+ T + + +S +
Sbjct: 26 KDVLGGGLTPKVTCVVVDISQNDPEVRFSWFIDDVEVHTAQTHAPEKQSNSTLRSVSELP 85
Query: 67 ISHVTVEDGGEYACVAENRA 86
I +G + C + A
Sbjct: 86 IVERDWLNGKTFKCKVNSGA 105
Score = 33.7 bits (77), Expect = 0.049
Identities = 12/67 (17%), Positives = 23/67 (34%), Gaps = 6/67 (8%)
Query: 213 VICGVTHGDPPLTIRWLKDGKPLSPRFPVNVSDLDSFS-----SLLSINSVSAAHSGEYT 267
V+ ++ DP + W D + + + S S S L I + +
Sbjct: 40 VVVDISQNDPEVRFSWFIDDVEVHTAQT-HAPEKQSNSTLRSVSELPIVERDWLNGKTFK 98
Query: 268 CVASNTA 274
C ++ A
Sbjct: 99 CKVNSGA 105
Score = 32.2 bits (73), Expect = 0.14
Identities = 16/105 (15%), Positives = 38/105 (36%), Gaps = 6/105 (5%)
Query: 183 IEEVHWEKVPPKIESFAFPFDGLPEGARTRVICGVTHGDPP-LTIRWLKDGKPLS----P 237
I + P++ + A P + + + + + C V PP + W +G+P
Sbjct: 114 ISKPEGTPRGPQVYTMAPPKEEMTQSQVS-ITCMVKGFYPPDIYTEWKMNGQPQENYKNT 172
Query: 238 RFPVNVSDLDSFSSLLSINSVSAAHSGEYTCVASNTAAQARYSSK 282
++ S L++ + +TC + + ++ K
Sbjct: 173 PPTMDTDGSYFLYSKLNVKKETWQQGNTFTCSVLHEGLENEHTEK 217
>1xiw_A T-cell surface glycoprotein CD3 epsilon chain; CD3-epsilon,
CD3-delta, UCHT1-SCFV, immunoglobulin fold,
antibody-antigen complex; 1.90A {Homo sapiens} SCOP:
b.1.1.4
Length = 105
Score = 37.5 bits (86), Expect = 7e-04
Identities = 14/65 (21%), Positives = 18/65 (27%), Gaps = 12/65 (18%)
Query: 88 TCEITPYDSGPYLIAWFKDGRQIPGRT--------SSTSLVINPVGREDRGIYQCIARRS 139
TC P I W + + I G + E G Y C R S
Sbjct: 27 TCPQYPGSE----ILWQHNDKNIGGDEDDKNIGSDEDHLSLKEFSELEQSGYYVCYPRGS 82
Query: 140 DGDVA 144
+ A
Sbjct: 83 KPEDA 87
Score = 36.7 bits (84), Expect = 0.001
Identities = 10/58 (17%), Positives = 14/58 (24%), Gaps = 1/58 (1%)
Query: 221 DPPLTIRWLKDGKPLSPRFPVNVSDLDSFSSLLSINSVSAAHSGEYTCVASNTAAQAR 278
P I W + K + D L SG Y C + +
Sbjct: 31 YPGSEILWQHNDKNIGGDEDDKNIGSDE-DHLSLKEFSELEQSGYYVCYPRGSKPEDA 87
Score = 36.7 bits (84), Expect = 0.001
Identities = 12/72 (16%), Positives = 21/72 (29%), Gaps = 9/72 (12%)
Query: 17 GPAVSLKCIASGNPTPDIGWTLDGFELPTNNRFVIGQFVSGHGDVISHVNISHVT-VEDG 75
G V L C P +I W + + + H +++ + +E
Sbjct: 21 GTTVILTC--PQYPGSEILWQHNDKNIGGDEDDKNIGSDEDH------LSLKEFSELEQS 72
Query: 76 GEYACVAENRAG 87
G Y C
Sbjct: 73 GYYVCYPRGSKP 84
>2vol_A Murine IGG FC; FC, zinc, B30.2, nucleus, pryspry, cytoplasm, mouse
IGG, zinc-finger, DNA-binding, RNA-binding, tripartite
motif (TRIM) protein; HET: NAG MAN GAL FUC; 1.95A {Mus
musculus} PDB: 3hkf_A 1i1a_C* 1cqk_A
Length = 207
Score = 38.7 bits (90), Expect = 8e-04
Identities = 28/216 (12%), Positives = 58/216 (26%), Gaps = 57/216 (26%)
Query: 88 TCEITPYDSGPYL--IAWFKDG------------RQIPGRTSSTS-LVINPVGREDRGIY 132
TC + +WF D Q S S L I + +
Sbjct: 24 TCVVVDISKDDPEVQFSWFVDDVEVHTAQTKPREEQFNSTFRSVSELPIMHQDWLNGKEF 83
Query: 133 QCIARRSDGDVAQGSAELQLGGLPYVRLIPKVTAIDGEGLSIKCPVAGYPIEEVHWEKVP 192
+C + P+ I +
Sbjct: 84 KCRVNSAAFPA---------------------------------PIEKT-ISKTKGRPKA 109
Query: 193 PKIESFAFPFDGLPEGARTRVICGVTHGDPP-LTIRWLKDGKPLSPRFPVNVSDLD---- 247
P++ + P + + + + + C +T P +T+ W +G+P + +D
Sbjct: 110 PQVYTLPPPKEQMAKDKVS-LTCMITDFFPEDITVEWESNGQPAE-NYKNTQPIMDTDGS 167
Query: 248 -SFSSLLSINSVSAAHSGEYTCVASNTAAQARYSSK 282
S L++ + +TC + ++ K
Sbjct: 168 YFVYSKLNVQKSNWEAGNTFTCSVLHEGLHNHHTEK 203
Score = 35.2 bits (81), Expect = 0.011
Identities = 13/81 (16%), Positives = 26/81 (32%), Gaps = 4/81 (4%)
Query: 10 IEQTLQPGPAVSLKCIASG-NPTPD---IGWTLDGFELPTNNRFVIGQFVSGHGDVISHV 65
+ L + C+ + W +D E+ T + + +S +
Sbjct: 11 PKDVLTITLTPKVTCVVVDISKDDPEVQFSWFVDDVEVHTAQTKPREEQFNSTFRSVSEL 70
Query: 66 NISHVTVEDGGEYACVAENRA 86
I H +G E+ C + A
Sbjct: 71 PIMHQDWLNGKEFKCRVNSAA 91
Score = 34.5 bits (79), Expect = 0.025
Identities = 17/90 (18%), Positives = 28/90 (31%), Gaps = 13/90 (14%)
Query: 192 PPKIESFAFPFDGLPEGARTRVIC---GVTHGDPPLTIRWLKDGKPLS----PRFPVNVS 244
PPK + D L +V C ++ DP + W D + +
Sbjct: 8 PPKPK------DVLTITLTPKVTCVVVDISKDDPEVQFSWFVDDVEVHTAQTKPREEQFN 61
Query: 245 DLDSFSSLLSINSVSAAHSGEYTCVASNTA 274
S L I + E+ C ++ A
Sbjct: 62 STFRSVSELPIMHQDWLNGKEFKCRVNSAA 91
>1igt_B IGG2A intact antibody - MAB231; intact immunoglobulin V region C
region, immunoglobulin; HET: NAG FUL BMA MAN GAL FUC;
2.80A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 b.1.1.2
b.1.1.2
Length = 444
Score = 39.5 bits (92), Expect = 8e-04
Identities = 31/209 (14%), Positives = 46/209 (22%), Gaps = 36/209 (17%)
Query: 83 ENRAGTCEITPYDSGPYLIAWFKDGR----------QIPGRTSSTSLVINPVGREDRGIY 132
+ C + Y P + W + +S V
Sbjct: 139 SSVTLGCLVKGYFPEPVTLTWNSGSLSSGVHTFPAVLQSDLYTLSSSVTVTSSTWPSQSI 198
Query: 133 QCIARRSDGDVAQGSAELQLGGLPYVRLIPKVTAIDGEGLSIKCPVAGYPIEEVHWEKVP 192
C + I KCP A + P
Sbjct: 199 TCNVAHPASST------------KVDKKIEPRGPTIKPCPPCKCP-APNLLGGPSVFIFP 245
Query: 193 PKIESFAFPFDGLPEGARTRVIC---GVTHGDPPLTIRWLKDGKPLSPRFPVNVSDLD-- 247
PKI+ D L V C V+ DP + I W + + +
Sbjct: 246 PKIK------DVLMISLSPIVTCVVVDVSEDDPDVQISWFVNNVEVHTAQTQTHREDYNS 299
Query: 248 --SFSSLLSINSVSAAHSGEYTCVASNTA 274
S L I E+ C +N
Sbjct: 300 TLRVVSALPIQHQDWMSGKEFKCKVNNKD 328
Score = 33.0 bits (75), Expect = 0.11
Identities = 18/96 (18%), Positives = 33/96 (34%), Gaps = 6/96 (6%)
Query: 192 PPKIESFAFPFDGLPEGARTRVICGVTHGDP-PLTIRWLKDGKPLSPRFPV-NVSDLDSF 249
P++ P + + + T + C VT P + + W +GK V D D
Sbjct: 346 APQVYVLPPPEEEMTKKQVT-LTCMVTDFMPEDIYVEWTNNGKTELNYKNTEPVLDSDGS 404
Query: 250 SSLLSINSVSAA--HSGE-YTCVASNTAAQARYSSK 282
+ S V Y+C + +++K
Sbjct: 405 YFMYSKLRVEKKNWVERNSYSCSVVHEGLHNHHTTK 440
Score = 30.3 bits (68), Expect = 0.82
Identities = 12/69 (17%), Positives = 22/69 (31%), Gaps = 2/69 (2%)
Query: 20 VSLKCIASGNPTPDIG--WTLDGFELPTNNRFVIGQFVSGHGDVISHVNISHVTVEDGGE 77
V+L C+ + DI WT +G G + S + + +
Sbjct: 364 VTLTCMVTDFMPEDIYVEWTNNGKTELNYKNTEPVLDSDGSYFMYSKLRVEKKNWVERNS 423
Query: 78 YACVAENRA 86
Y+C +
Sbjct: 424 YSCSVVHEG 432
>1iga_A IGA1; immunoglobulin; NMR {Homo sapiens} PDB: 2esg_A 2qtj_A 3chn_A
1r70_B 3cm9_A
Length = 475
Score = 39.5 bits (92), Expect = 0.001
Identities = 16/116 (13%), Positives = 33/116 (28%), Gaps = 4/116 (3%)
Query: 163 KVTAIDGEGLSIKCPVAGYPIEEVHWEKVPPKIESFAFPFDGLPEGARTRVICGVT--HG 220
+ + S + P++ + L G+ + C +T
Sbjct: 217 QDVTVPCPVPSTPPTPSPSTPPTPSPSCCHPRLSLHRPALEDLLLGSEANLTCTLTGLRD 276
Query: 221 DPPLTIRWLKDG--KPLSPRFPVNVSDLDSFSSLLSINSVSAAHSGEYTCVASNTA 274
+T W + ++ S SS+L + H +TC A+
Sbjct: 277 ASGVTFTWTPSSGKSAVQGPPERDLCGCYSVSSVLPGCAEPWNHGKTFTCTAAYPE 332
Score = 33.4 bits (76), Expect = 0.075
Identities = 44/317 (13%), Positives = 76/317 (23%), Gaps = 43/317 (13%)
Query: 1 TPPILTYSFIEQTLQPGPAVSLKCIASG---NPTPDIGWTLDGFELPTNNRFVIGQFVSG 57
+ + QP V + C+ G + W+ G + N
Sbjct: 125 PTSPKVFPLSLCSTQPDGNVVIACLVQGFFPQEPLSVTWSESGQGVTARNFPPSQDASGD 184
Query: 58 HGDVISHVNISHVTVEDGGEYACVAENRAGT---------CEITPYDSGPYLIAWFKDGR 108
S + + G C ++ TP P
Sbjct: 185 LYTTSSQLTLPATQCLAGKSVTCHVKHYTNPSQDVTVPCPVPSTPPTPSPSTPPTPSPSC 244
Query: 109 QIPG------------RTSSTSLVINPVG-REDRGIYQCIARRSDGDVAQGSAELQLGGL 155
P S +L G R+ G+ S QG E L G
Sbjct: 245 CHPRLSLHRPALEDLLLGSEANLTCTLTGLRDASGVTFTWTPSSGKSAVQGPPERDLCGC 304
Query: 156 PYVRLIPKVTAIDGE-GLSIKCPVAGYPIE---EVHWEKVPPKIESFAFPFDGLPEGART 211
V + A G + C A + K E
Sbjct: 305 YSVSSVLPGCAEPWNHGKTFTCTAAYPESKTPLTATLSKSGNTFRPEVHLLPPPSEELAL 364
Query: 212 R----VICGVTHGDP-PLTIRWLKDGKPLSPRF---------PVNVSDLDSFSSLLSINS 257
+ C P + +RWL+ + L P + + +S+L + +
Sbjct: 365 NELVTLTCLARGFSPKDVLVRWLQGSQELPREKYLTWASRQEPSQGTTTFAVTSILRVAA 424
Query: 258 VSAAHSGEYTCVASNTA 274
++C+ + A
Sbjct: 425 EDWKKGDTFSCMVGHEA 441
>1hzh_H IGG, immunoglobulin heavy chain; antibody, immune system; HET: NAG
BMA MAN GAL FUC; 2.70A {Homo sapiens} SCOP: b.1.1.1
b.1.1.2 b.1.1.2 b.1.1.2 PDB: 2ig2_H 1mco_H*
Length = 457
Score = 39.1 bits (91), Expect = 0.001
Identities = 35/205 (17%), Positives = 48/205 (23%), Gaps = 38/205 (18%)
Query: 88 TCEITPYDSGPYLIAWFKDGRQIPGRT-----------SSTSLVINPVGREDRGIYQCIA 136
C + Y P ++W T S +S+V P Y C
Sbjct: 153 GCLVKDYFPEPVTVSWNSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGTQTYICNV 212
Query: 137 RRSDGDVAQGSAELQLGGLPYVRLIPKVTAIDGEGLSIKCPVAGYPIEEVHWEKVPPKIE 196
E S P P
Sbjct: 213 NHKPS--------------------NTKVDKKAEPKSCDKTHTCPPCPAPELLGGPSVFL 252
Query: 197 SFAFPFDGLPEGARTRVIC---GVTHGDPPLTIRWLKDGKPLSPRFPV----NVSDLDSF 249
P D L V C V+H DP + W DG + +
Sbjct: 253 FPPKPKDTLMISRTPEVTCVVVDVSHEDPEVKFNWYVDGVEVHNAKTKPREEQYNSTYRV 312
Query: 250 SSLLSINSVSAAHSGEYTCVASNTA 274
S+L++ + EY C SN A
Sbjct: 313 VSVLTVLHQDWLNGKEYKCKVSNKA 337
Score = 37.2 bits (86), Expect = 0.005
Identities = 22/155 (14%), Positives = 42/155 (27%), Gaps = 41/155 (26%)
Query: 5 LTYSFIEQTLQPGPAVSLKCIASG----NPTPDIGWTLDGFELPTNNRFVIGQFVSGHGD 60
L + TL + C+ +P W +DG E+ + +
Sbjct: 252 LFPPKPKDTLMISRTPEVTCVVVDVSHEDPEVKFNWYVDGVEVHNAKTKPREEQYNSTYR 311
Query: 61 VISHVNISHVTVEDGGEYACVAENRAG--------------------------------- 87
V+S + + H +G EY C N+A
Sbjct: 312 VVSVLTVLHQDWLNGKEYKCKVSNKALPAPIEKTISKAKGQPREPQVYTLPPSRDELTKN 371
Query: 88 ----TCEITPYDSGPYLIAWFKDGRQIPGRTSSTS 118
TC + + + W +G+ ++
Sbjct: 372 QVSLTCLVKGFYPSDIAVEWESNGQPENNYKTTPP 406
Score = 30.2 bits (68), Expect = 0.87
Identities = 14/69 (20%), Positives = 23/69 (33%), Gaps = 2/69 (2%)
Query: 20 VSLKCIASGNPTPDIG--WTLDGFELPTNNRFVIGQFVSGHGDVISHVNISHVTVEDGGE 77
VSL C+ G DI W +G G + S + + + G
Sbjct: 373 VSLTCLVKGFYPSDIAVEWESNGQPENNYKTTPPVLDSDGSFFLYSKLTVDKSRWQQGNV 432
Query: 78 YACVAENRA 86
++C + A
Sbjct: 433 FSCSVMHEA 441
Score = 29.5 bits (66), Expect = 1.3
Identities = 17/75 (22%), Positives = 29/75 (38%), Gaps = 5/75 (6%)
Query: 213 VICGVTHGDP-PLTIRWLKDGKPLSPRFPV-NVSDLDSFSSLLSINSVSAA--HSGE-YT 267
+ C V P + + W +G+P + V D D L S +V + G ++
Sbjct: 375 LTCLVKGFYPSDIAVEWESNGQPENNYKTTPPVLDSDGSFFLYSKLTVDKSRWQQGNVFS 434
Query: 268 CVASNTAAQARYSSK 282
C + A Y+ K
Sbjct: 435 CSVMHEALHNHYTQK 449
>3f8u_B Tapasin; endoplasmic reticulum, glycoprotein, immunoglobulin
domain, microsome, protein disulfide isomerase,
thioredoxin-like FO like domain; HET: NAG; 2.60A {Homo
sapiens}
Length = 401
Score = 37.7 bits (86), Expect = 0.003
Identities = 32/189 (16%), Positives = 44/189 (23%), Gaps = 51/189 (26%)
Query: 97 GPYLIAWFKDGRQIPGRTSSTSLVINPVGREDRGIYQCIARRSDGDVAQGSAELQLGGLP 156
G A + D T + + + V G Y Q + EL + P
Sbjct: 234 GAVAFAAWDDDEPWGPWTGNGTFWLPRVQPFQEGTYLATIHLPYL-QGQVTLELAVYKPP 292
Query: 157 YVRLIPKVTAIDGEGLSIKCPVAGYPIEEVHWEKVPPKIESFAFPFDGLPEGARTRVICG 216
V L+P A P A ++C
Sbjct: 293 KVSLMPATLA------------------------------------RAAPGEAPPELLCL 316
Query: 217 VTHGDP--PLTIRWLKDGKPLSPRFPVNVSDLDSF-----------SSLLSINSVSAAHS 263
V+H P L + W G P S S L V+
Sbjct: 317 VSHFYPSGGLEVEWELRGGPGGRSQKAEGQRWLSALRHHSDGSVSLSGHLQPPPVTTEQH 376
Query: 264 GE-YTCVAS 271
G Y C
Sbjct: 377 GARYACRIH 385
Score = 30.7 bits (68), Expect = 0.47
Identities = 24/212 (11%), Positives = 49/212 (23%), Gaps = 21/212 (9%)
Query: 86 AGTCEITPYDSGPYLIAWFKDGRQIPGRTSSTSLVINPVGREDRGIYQCIARRSDGDVAQ 145
A CE++ + P W T P + + I+ +
Sbjct: 88 APHCEMSRFVPLPASAKWASGL---------TPAQNCPRALDGAWLMVSISSPVLSLSSL 138
Query: 146 GSAELQLGGLPYVRLI-----------PKVTAIDGEGLSIKCPVAGYPIEEVHWEKVPPK 194
+ + P + + P G+ + A P + P
Sbjct: 139 LRPQPEPQQEPVLITMATVVLTVLTHTPAPRVRLGQDALLDLSFAYMPPTSEAASSLAPG 198
Query: 195 IESFAFPFDGLPEGARTRVICGVTHGDPPLTIRWLKDGKPLSPRFPVNVSDLDSFSSLLS 254
F + G ++ T G + + + +
Sbjct: 199 PPPFGLEWRRQHLGKGHLLL-AATPGLNGQMPAAQEGAVAFAAWDDDEPWGPWTGNGTFW 257
Query: 255 INSVSAAHSGEYTCVASNTAAQARYSSKLQVK 286
+ V G Y Q + + +L V
Sbjct: 258 LPRVQPFQEGTYLATIHLPYLQGQVTLELAVY 289
>3q0h_A T cell immunoreceptor with IG and ITIM domains; immune receptor,
adhesion, structural genomics, NEW YORK STR genomics
research consortium, nysgrc; 1.70A {Homo sapiens} PDB:
3rq3_A 3udw_A* 3ucr_A
Length = 117
Score = 35.7 bits (82), Expect = 0.004
Identities = 11/87 (12%), Positives = 23/87 (26%), Gaps = 18/87 (20%)
Query: 88 TCEITPYDSGPYLIAWFKDGRQIP---------------GRTSST---SLVINPVGREDR 129
C ++ + + W + + + R + L + + D
Sbjct: 24 QCHLSSTTAQVTQVNWEQQDQLLAICNADLGWHISPSFKDRVAPGPGLGLTLQSLTVNDT 83
Query: 130 GIYQCIARRSDGDVAQGSAELQLGGLP 156
G Y CI G L++
Sbjct: 84 GEYFCIYHTYPDGTYTGRIFLEVLESS 110
Score = 35.3 bits (81), Expect = 0.005
Identities = 19/131 (14%), Positives = 39/131 (29%), Gaps = 34/131 (25%)
Query: 158 VRLIPKVTAIDGEGLSIKC--PVAGYPIEEVHWEKVPPKIESFAFPFDGLPEGARTRVIC 215
+ ++A G + ++C + +V+WE+ +
Sbjct: 7 IETTGNISAEKGGSIILQCHLSSTTAQVTQVNWEQQDQLLAICNA--------------- 51
Query: 216 GVTHGDPPLTIRWLKDGKPLSPRFPVNVSDLDSFSSLLSINSVSAAHSGEYTC-VASNTA 274
G +SP F V+ L++ S++ +GEY C +
Sbjct: 52 --------------DLGWHISPSFKDRVAPGPGLG--LTLQSLTVNDTGEYFCIYHTYPD 95
Query: 275 AQARYSSKLQV 285
L+V
Sbjct: 96 GTYTGRIFLEV 106
Score = 28.7 bits (64), Expect = 0.84
Identities = 17/84 (20%), Positives = 29/84 (34%), Gaps = 8/84 (9%)
Query: 13 TLQPGPAVSLKCIASGNPTP--DIGWTLDGFELPTNNRFVIGQFVSGHGDVIS-----HV 65
+ + G ++ L+C S + W L N + D ++ +
Sbjct: 14 SAEKGGSIILQCHLSSTTAQVTQVNWEQQDQLLAICNADLGWHISPSFKDRVAPGPGLGL 73
Query: 66 NISHVTVEDGGEYAC-VAENRAGT 88
+ +TV D GEY C GT
Sbjct: 74 TLQSLTVNDTGEYFCIYHTYPDGT 97
>2rgs_A I, IG gamma-2B heavy chain; FC-fragment, immunoglobulin,
glycosylation, immune system; HET: NAG FUC MAN GAL;
2.13A {Mus musculus}
Length = 218
Score = 36.4 bits (84), Expect = 0.005
Identities = 16/81 (19%), Positives = 28/81 (34%), Gaps = 4/81 (4%)
Query: 10 IEQTLQPGPAVSLKCIASGNPTPD----IGWTLDGFELPTNNRFVIGQFVSGHGDVISHV 65
I+ L + C+ D I W ++ E+ T + + V+S +
Sbjct: 19 IKDVLMISLTPKVTCVVVDVSEDDPDVQISWFVNNVEVHTAQTQTHREDYNSTIRVVSTL 78
Query: 66 NISHVTVEDGGEYACVAENRA 86
I H G E+ C N+
Sbjct: 79 PIQHQDWMSGKEFKCKVNNKD 99
Score = 35.7 bits (82), Expect = 0.009
Identities = 12/66 (18%), Positives = 22/66 (33%), Gaps = 4/66 (6%)
Query: 213 VICGVTHGDPPLTIRWLKDGKPL----SPRFPVNVSDLDSFSSLLSINSVSAAHSGEYTC 268
V+ V+ DP + I W + + + + + S L I E+ C
Sbjct: 34 VVVDVSEDDPDVQISWFVNNVEVHTAQTQTHREDYNSTIRVVSTLPIQHQDWMSGKEFKC 93
Query: 269 VASNTA 274
+N
Sbjct: 94 KVNNKD 99
Score = 33.4 bits (76), Expect = 0.056
Identities = 27/216 (12%), Positives = 54/216 (25%), Gaps = 57/216 (26%)
Query: 88 TCEITPYDSGPYL--IAWFKDG------------RQIPGRTSSTS-LVINPVGREDRGIY 132
TC + I+WF + S L I +
Sbjct: 32 TCVVVDVSEDDPDVQISWFVNNVEVHTAQTQTHREDYNSTIRVVSTLPIQHQDWMSGKEF 91
Query: 133 QCIARRSDGDVAQGSAELQLGGLPYVRLIPKVTAIDGEGLSIKCPVAGYPIEEVHWEKVP 192
+C D P+ I ++
Sbjct: 92 KCKVNNKDLPS---------------------------------PIERT-ISKIKGLVRA 117
Query: 193 PKIESFAFPFDGLPEGARTRVICGVTHGDPP-LTIRWLKDGKPLSPRFPVNVSDLD---- 247
P++ P + L + + C V +P +++ W +G + LD
Sbjct: 118 PQVYILPPPAEQLSRKDVS-LTCLVVGFNPGDISVEWTSNGHTEE-NYKDTAPVLDSDGS 175
Query: 248 -SFSSLLSINSVSAAHSGEYTCVASNTAAQARYSSK 282
S L++ + + ++C + + Y K
Sbjct: 176 YFIYSKLNMKTSKWEKTDSFSCNVRHEGLKNYYLKK 211
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 37.3 bits (86), Expect = 0.005
Identities = 46/276 (16%), Positives = 76/276 (27%), Gaps = 89/276 (32%)
Query: 2 PPILTYSFIEQTL-QPGPAVSLKCIASGNPTPDIGWTLDGF--ELPTNNRFVIG------ 52
PP + +E P P +S+ + ++ LP + I
Sbjct: 320 PPSILEDSLENNEGVPSPMLSIS----NLTQEQVQDYVNKTNSHLPAGKQVEISLVNGAK 375
Query: 53 QFV-SGHGDVISHVNIS--HVTVEDGGEYACVAENRAGTCE-----------IT-PYDSG 97
V SG + +N++ G + ++R E + P+ S
Sbjct: 376 NLVVSGPPQSLYGLNLTLRKAKAPSGLD-----QSRIPFSERKLKFSNRFLPVASPFHS- 429
Query: 98 PYLI----AWFKDGRQIPGRTSSTSLVINPVGREDRGIYQCIARRSDG-DVAQGSAELQL 152
L+ KD + ++ + I PV Y DG D+ S +
Sbjct: 430 HLLVPASDLINKDLVKNNVSFNAKDIQI-PV-------YDT----FDGSDLRVLSGSISE 477
Query: 153 GGLPYVRLIPKVTAIDGEGLSIKCPVAGYPIEEVHWEKVPPKIESFAFPFDGLPEGARTR 212
R++ + V WE + F P
Sbjct: 478 ------RIVDCII-----------------RLPVKWETTTQFKATHILDFG--P------ 506
Query: 213 VICGVTHGDPPLTIRWLKDGKPLSPRFPVNVSDLDS 248
G G LT R KDG + R + LD
Sbjct: 507 ---GGASGLGVLTHR-NKDGTGV--RV-IVAGTLDI 535
Score = 37.3 bits (86), Expect = 0.006
Identities = 40/253 (15%), Positives = 69/253 (27%), Gaps = 95/253 (37%)
Query: 8 SFIEQTLQPGPAVS----LKCIASGNPTPDIGWTLDGFELPTNNRFVIGQFVSGHGDVIS 63
++ ++P L L FE ++ G+ D+
Sbjct: 66 GYVSSLVEPSKVGQFDQVLNLC------------LTEFE---------NCYLEGN-DI-- 101
Query: 64 HVNISHVTVEDGGEYACVAEN-RAGTCEITPYDSGPYLIAWFKDGRQIPGRTSSTSLVIN 122
H + + E+ E + Y+ A R P S S +
Sbjct: 102 HALAAKLLQENDTTLVKTKELIKN------------YITARIMAKR--PFDKKSNSALFR 147
Query: 123 PVGREDRGIYQCIARRSDGDVAQGSA-----ELQ---------LGGL---------PYVR 159
VG + + G QG+ EL+ +G L +R
Sbjct: 148 AVGEGNAQLVAIFG----G---QGNTDDYFEELRDLYQTYHVLVGDLIKFSAETLSELIR 200
Query: 160 LIPKVTAIDGEGLSIKCPVAGYPIEEVHW----EKVPPK--IES--FAFPFDGLPEGART 211
+ +GL+I + W P K + S + P G+ + A
Sbjct: 201 TTLDAEKVFTQGLNI-----------LEWLENPSNTPDKDYLLSIPISCPLIGVIQLAHY 249
Query: 212 RVIC---GVTHGD 221
V G T G+
Sbjct: 250 VVTAKLLGFTPGE 262
>1ow0_A IG alpha-1 chain C region; IGA1, fcari, CD89, antibody,
immunoglobulin-LIK immune system; HET: NAG FUL BMA GAL
SIA FUC MAN NDG; 3.10A {Homo sapiens} SCOP: b.1.1.2
b.1.1.2 PDB: 2qej_A*
Length = 214
Score = 36.4 bits (84), Expect = 0.006
Identities = 19/155 (12%), Positives = 33/155 (21%), Gaps = 42/155 (27%)
Query: 14 LQPGPAVSLKCIASGNPTPD---IGWTLDGFELPTNNRFVIGQFVSGHGDVISHVNISHV 70
L G +L C +G WT + + + G V S +
Sbjct: 16 LLLGSEANLTCTLTGLRDASGVTFTWTPSSGKSAVQG--PPERDLCGCYSVSSVLPGCAE 73
Query: 71 TVEDGGEYACVAENRAG-------------------------------------TCEITP 93
G + C A TC
Sbjct: 74 PWNHGKTFTCTAAYPESKTPLTATLSKSGNTFRPEVHLLPPPSEELALNELVTLTCLARG 133
Query: 94 YDSGPYLIAWFKDGRQIPGRTSSTSLVINPVGRED 128
+ L+ W + +++P T +
Sbjct: 134 FSPKDVLVRWLQGSQELPREKYLTWASRQEPSQGT 168
Score = 34.8 bits (80), Expect = 0.015
Identities = 14/104 (13%), Positives = 35/104 (33%), Gaps = 10/104 (9%)
Query: 189 EKVPPKIESFAFPFDGLPEGARTRVICGVTHGDPP-LTIRWLKDGKPLSPRFPVNVSDLD 247
P++ P + L + C P + +RWL+ + L + +
Sbjct: 103 NTFRPEVHLLPPPSEELALNELVTLTCLARGFSPKDVLVRWLQGSQELPREKYLTWASRQ 162
Query: 248 ---------SFSSLLSINSVSAAHSGEYTCVASNTAAQARYSSK 282
+ +S+L + + ++C+ + A ++ K
Sbjct: 163 EPSQGTTTFAVTSILRVAAEDWKKGDTFSCMVGHEALPLAFTQK 206
Score = 28.3 bits (63), Expect = 2.2
Identities = 18/87 (20%), Positives = 27/87 (31%), Gaps = 11/87 (12%)
Query: 192 PPKIESFAFPFDGLPEGARTRVICGVTHGDPP--LTIRWLKDG-KPLSPRFPVNVSD-LD 247
P +E L G+ + C +T +T W K P
Sbjct: 10 RPALED-------LLLGSEANLTCTLTGLRDASGVTFTWTPSSGKSAVQGPPERDLCGCY 62
Query: 248 SFSSLLSINSVSAAHSGEYTCVASNTA 274
S SS+L + H +TC A+
Sbjct: 63 SVSSVLPGCAEPWNHGKTFTCTAAYPE 89
>2edn_A Myosin-binding protein C, fast-type; beta-sandwich, IG-fold, fast
MYBP-C, C-protein, skeletal muscle fast isoform,
structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 118
Score = 35.2 bits (80), Expect = 0.006
Identities = 17/92 (18%), Positives = 27/92 (29%), Gaps = 12/92 (13%)
Query: 206 PEGARTRVICGVTHGDPPL--TIRWLK---------DGKPLSPRFPVNVSDLDSFSSLLS 254
G V+ V + P TI+W K G S + N + + ++ L
Sbjct: 25 ETGKDAVVVAKVNGKELPDKPTIKWFKGKWLELGSKSGARFSFKESHNSAS-NVYTVELH 83
Query: 255 INSVSAAHSGEYTCVASNTAAQARYSSKLQVK 286
I V G Y + V+
Sbjct: 84 IGKVVLGDRGYYRLEVKAKDTCDSCGFNIDVE 115
Score = 29.4 bits (65), Expect = 0.59
Identities = 14/90 (15%), Positives = 31/90 (34%), Gaps = 11/90 (12%)
Query: 9 FIE----QTLQPGPAVSLKCIASGNP---TPDIGW---TLDGFELPTNNRFVIGQFVSGH 58
F++ +++ G + +G P I W + RF + +
Sbjct: 15 FLKKPDSVSVETGKDAVVVAKVNGKELPDKPTIKWFKGKWLELGSKSGARFSFKESHNSA 74
Query: 59 GDVISH-VNISHVTVEDGGEYACVAENRAG 87
+V + ++I V + D G Y + +
Sbjct: 75 SNVYTVELHIGKVVLGDRGYYRLEVKAKDT 104
Score = 26.7 bits (58), Expect = 4.6
Identities = 10/38 (26%), Positives = 14/38 (36%)
Query: 104 FKDGRQIPGRTSSTSLVINPVGREDRGIYQCIARRSDG 141
FK+ + L I V DRG Y+ + D
Sbjct: 67 FKESHNSASNVYTVELHIGKVVLGDRGYYRLEVKAKDT 104
>1zxq_A ICAM-2, intercellular adhesion molecule-2; immunoglobulin fold,
cell adhesion, glycoprotein, transmembr; HET: NAG; 2.20A
{Homo sapiens} SCOP: b.1.1.3 b.1.1.4
Length = 192
Score = 35.9 bits (82), Expect = 0.006
Identities = 10/69 (14%), Positives = 23/69 (33%), Gaps = 3/69 (4%)
Query: 205 LPEGARTRVICGVTHGDPP--LTIRWLKDGKPLSPR-FPVNVSDLDSFSSLLSINSVSAA 261
+ G + C V +P LT+ + + L F ++ + +
Sbjct: 100 VAVGKSFTIECRVPTVEPLDSLTLFLFRGNETLHYETFGKAAPAPQEATATFNSTADRED 159
Query: 262 HSGEYTCVA 270
++C+A
Sbjct: 160 GHRNFSCLA 168
Score = 31.7 bits (71), Expect = 0.18
Identities = 17/172 (9%), Positives = 41/172 (23%), Gaps = 58/172 (33%)
Query: 11 EQTLQPGPAVSLKCIASGNPTPDIGWTLDGFELPTNNRFVIGQFVSGHGDVISHVNISHV 70
+ ++P ++ + C + N G + + + H +S
Sbjct: 11 KLAVEPKGSLEVNCSTTCNQPEVGGL-----------ETSLNKILLDEQAQWKHYLVS-- 57
Query: 71 TVEDGGEYACVA----ENRAGTCEITPY----------------------------DSGP 98
+ C + + ++ Y P
Sbjct: 58 NISHDTVLQCHFTCSGKQESMNSNVSVYQPPRQVILTLQPTLVAVGKSFTIECRVPTVEP 117
Query: 99 ---YLIAWFKDGRQIPGRT---------SSTSLVINPVGREDRG-IYQCIAR 137
+ F+ + T +T+ + RED + C+A
Sbjct: 118 LDSLTLFLFRGNETLHYETFGKAAPAPQEATATFNSTADREDGHRNFSCLAV 169
Score = 28.6 bits (63), Expect = 2.0
Identities = 13/81 (16%), Positives = 23/81 (28%), Gaps = 10/81 (12%)
Query: 205 LPEGARTRVICGVTHGDPPLTIRWLKDGKPLSPRFPVNVSDLDSFSSLLSINSVSAAHSG 264
+ V C T P + L +N LD + + +H
Sbjct: 14 VEPKGSLEVNCSTTCNQPEV--GGL--------ETSLNKILLDEQAQWKHYLVSNISHDT 63
Query: 265 EYTCVASNTAAQARYSSKLQV 285
C + + Q +S + V
Sbjct: 64 VLQCHFTCSGKQESMNSNVSV 84
Score = 27.4 bits (60), Expect = 4.2
Identities = 9/86 (10%), Positives = 25/86 (29%), Gaps = 6/86 (6%)
Query: 2 PPILTYSFIEQTLQPGPAVSLKCIASG-NPTPD--IGWTLDGFELPTNNRFVIGQFVSGH 58
P + + + G + +++C P + L G+
Sbjct: 88 PRQVILTLQPTLVAVGKSFTIECRVPTVEPLDSLTLFLFRGNETLHYET---FGKAAPAP 144
Query: 59 GDVISHVNISHVTVEDGGEYACVAEN 84
+ + N + + ++C+A
Sbjct: 145 QEATATFNSTADREDGHRNFSCLAVL 170
>1l6x_A Immunoglobulin gamma-1 heavy chain constant regio; IGG1 FC, FC
complex, immune system; HET: NAG BMA MAN GAL FUL; 1.65A
{Homo sapiens} SCOP: b.1.1.2 b.1.1.2 PDB: 2iwg_A*
3v7m_A* 3d6g_A* 3agv_A* 1oqo_A* 1oqx_A* 3v95_A* 2wah_A*
3sgj_A* 3sgk_A* 2dtq_A* 2dts_A* 3ave_A* 3ay4_A* 3do3_A*
2gj7_A* 1t83_A* 1t89_A* 1dn2_A* 3dnk_A ...
Length = 207
Score = 36.0 bits (83), Expect = 0.007
Identities = 16/78 (20%), Positives = 28/78 (35%), Gaps = 4/78 (5%)
Query: 11 EQTLQPGPAVSLKCIASG----NPTPDIGWTLDGFELPTNNRFVIGQFVSGHGDVISHVN 66
+ TL + C+ +P W +DG E+ + + V+S +
Sbjct: 12 KDTLMISRTPEVTCVVVDVSHEDPEVKFNWYVDGVEVHNAKTKPREEQYNSTYRVVSVLT 71
Query: 67 ISHVTVEDGGEYACVAEN 84
+ H +G EY C N
Sbjct: 72 VLHQDWLNGKEYKCKVSN 89
Score = 34.9 bits (80), Expect = 0.015
Identities = 19/79 (24%), Positives = 28/79 (35%), Gaps = 7/79 (8%)
Query: 201 PFDGLPEGARTRVIC---GVTHGDPPLTIRWLKDGKPL----SPRFPVNVSDLDSFSSLL 253
P D L V C V+H DP + W DG + + + S+L
Sbjct: 11 PKDTLMISRTPEVTCVVVDVSHEDPEVKFNWYVDGVEVHNAKTKPREEQYNSTYRVVSVL 70
Query: 254 SINSVSAAHSGEYTCVASN 272
++ + EY C SN
Sbjct: 71 TVLHQDWLNGKEYKCKVSN 89
Score = 32.2 bits (73), Expect = 0.14
Identities = 30/215 (13%), Positives = 55/215 (25%), Gaps = 55/215 (25%)
Query: 88 TCEITPYDSGPYL--IAWFKDG------------RQIPGRTSSTS-LVINPVGREDRGIY 132
TC + W+ DG Q S L + + Y
Sbjct: 24 TCVVVDVSHEDPEVKFNWYVDGVEVHNAKTKPREEQYNSTYRVVSVLTVLHQDWLNGKEY 83
Query: 133 QCIARRSDGDVAQGSAELQLGGLPYVRLIPKVTAIDGEGLSIKCPVAGYPIEEVHWEKVP 192
+C I + +
Sbjct: 84 KCKVSNKALPAPIEK----------------------------------TISKAKGQPRE 109
Query: 193 PKIESFAFPFDGLPEGARTRVICGVTHGDPP-LTIRWLKDGKPLSPRF---PVNVSD-LD 247
P++ + D L + + + C V P + + W +G+P + PV SD
Sbjct: 110 PQVYTLPPSRDELTKNQVS-LTCLVKGFYPSDIAVEWESNGQPENNYKTTPPVLDSDGSF 168
Query: 248 SFSSLLSINSVSAAHSGEYTCVASNTAAQARYSSK 282
S L+++ ++C + A Y+ K
Sbjct: 169 FLYSKLTVDKSRWQQGNVFSCSVMHEALHNHYTQK 203
>1za6_B IGG heavy chain; immunoglobulin fold, CH2-domain-deletion, immune
system; 2.80A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2
b.1.1.2
Length = 344
Score = 36.0 bits (83), Expect = 0.010
Identities = 16/113 (14%), Positives = 35/113 (30%), Gaps = 6/113 (5%)
Query: 175 KCPVAGYPIEEVHWEKVPPKIESFAFPFDGLPEGARTRVICGVTHGDP-PLTIRWLKDGK 233
G + P++ + P + + C V P + + W +G+
Sbjct: 225 PPCGGGSSGGGSGGQPREPQVYTLP-PSRDELTKNQVSLTCLVKGFYPSDIAVEWESNGQ 283
Query: 234 PLS--PRFPV--NVSDLDSFSSLLSINSVSAAHSGEYTCVASNTAAQARYSSK 282
P + P + S L+++ ++C + A Y+ K
Sbjct: 284 PENNYKTTPPVLDSDGSFFLYSKLTVDKSRWQQGNVFSCSVMHEALHNHYTQK 336
>1iam_A ICAM-1, CD54, intercellular adhesion molecule-1; rhinovirus
receptor, cell adhesion, integrin ligand, glycopr LFA-1
ligand, immunoglobulin fold; HET: NAG; 2.10A {Homo
sapiens} SCOP: b.1.1.3 b.1.1.4 PDB: 1ic1_A* 1d3l_A
1d3e_I 1d3i_I 3tcx_A
Length = 185
Score = 35.1 bits (80), Expect = 0.012
Identities = 16/81 (19%), Positives = 27/81 (33%), Gaps = 6/81 (7%)
Query: 192 PPKIESFAFPFDGLPEGARTRVICGVTHGDPP--LTIRWLKDGKPLSPRFPVNVSDLDSF 249
P+ A P G + + C V G P LT+ L+ K L V +
Sbjct: 85 TPERVELAPLPSWQPVGKQLTLRCQVEGGAPRAQLTVVLLRGEKELKREPAVG----EPA 140
Query: 250 SSLLSINSVSAAHSGEYTCVA 270
++ H +++C
Sbjct: 141 EVTTTVLVRRDHHGAQFSCRT 161
Score = 28.1 bits (62), Expect = 2.8
Identities = 17/167 (10%), Positives = 42/167 (25%), Gaps = 52/167 (31%)
Query: 11 EQTLQPGPAVSLKCIASGNPTPDIGWTLDGFELPTNNRFVIGQFVSGHGDVISHVNISHV 70
+ L G +V + C S + +G E P + + G+ + +
Sbjct: 8 KVILPRGGSVLVTCSTSCDQPKLLGI-----ETPLPKK---ELLLPGNNRKVYEL----S 55
Query: 71 TVEDGGEYACVAENRAGTC---------------EITPYDSGPYL--------------- 100
V++ + C + G E+ P S +
Sbjct: 56 NVQEDSQPMCYSNCPDGQSTAKTFLTVYWTPERVELAPLPSWQPVGKQLTLRCQVEGGAP 115
Query: 101 -----IAWFKDGRQI-----PGRTSSTSLVINPVGREDRGIYQCIAR 137
+ + +++ G + + + + C
Sbjct: 116 RAQLTVVLLRGEKELKREPAVGEPAEVTTTVLVRRDHHGAQFSCRTE 162
>3i84_A Cervical EMMPRIN; CD147, dimerization, cell adhesion, beta-strand
swapping; 2.00A {Homo sapiens} PDB: 3i85_A
Length = 98
Score = 33.6 bits (76), Expect = 0.013
Identities = 16/63 (25%), Positives = 25/63 (39%), Gaps = 9/63 (14%)
Query: 208 GARTRVICGVTHGDPPLT-IRWLKDGKPLSPRFPVNVSDLDSFSSLLSINSVSAAHSGEY 266
G++ + C + +T RWLK G L L + ++S GEY
Sbjct: 22 GSKILLTCSLDDSATEVTGHRWLKGGVVLKE------DALPGQKTEFKVDS--DDQWGEY 73
Query: 267 TCV 269
+CV
Sbjct: 74 SCV 76
>3nvq_A Semaphorin-7A; beta-propeller, signaling, signaling protein-protein
binding; HET: NAG NDG; 2.40A {Homo sapiens}
Length = 590
Score = 35.8 bits (81), Expect = 0.014
Identities = 11/49 (22%), Positives = 15/49 (30%), Gaps = 4/49 (8%)
Query: 222 PPLTIRWLKDGKPLSPRFPVNVSDLDSFSSLLSINSVSAAHSGEYTCVA 270
T W P + S L I +++A G Y C A
Sbjct: 527 RHATYSWRHKENVEQSCEPGHQSPNCI----LFIENLTAQQYGHYFCEA 571
Score = 34.2 bits (77), Expect = 0.040
Identities = 17/118 (14%), Positives = 29/118 (24%), Gaps = 10/118 (8%)
Query: 24 CIASGNPTPDIGWTLDGFELPTNNRFVIGQFVSGHGDVISHVNISHVTVEDGGEYACVAE 83
C+ S +P GW ++ + Q ++ N
Sbjct: 459 CLMSRDPY--CGWDQGRCISIYSSERSVLQSINPAEPHKECPNPKPDKAPLQKVSLAPNS 516
Query: 84 NRAGTCEITPYDSGPYLIAWFKDGRQIPGRTSST-----SLVINPVGREDRGIYQCIA 136
+C P +S +W L I + + G Y C A
Sbjct: 517 RYYLSC---PMESRHATYSWRHKENVEQSCEPGHQSPNCILFIENLTAQQYGHYFCEA 571
Score = 30.4 bits (67), Expect = 0.84
Identities = 9/64 (14%), Positives = 14/64 (21%), Gaps = 9/64 (14%)
Query: 20 VSLKCIASGNPTPDIGWTLDGFELPTNNRFVIGQFVSGHGDVISHVNISHVTVEDGGEYA 79
L C W + I ++ T + G Y
Sbjct: 518 YYLSCPMESRH-ATYSWRHKENVEQSCEPGHQSP---NCILFIENL-----TAQQYGHYF 568
Query: 80 CVAE 83
C A+
Sbjct: 569 CEAQ 572
>3to4_D NKT vbeta2 (mouse variable domain, human constant; mouse CD1D,
mouse NKT, immune system; HET: AGH NAG; 3.10A {Homo
sapiens}
Length = 253
Score = 35.3 bits (81), Expect = 0.015
Identities = 27/193 (13%), Positives = 50/193 (25%), Gaps = 38/193 (19%)
Query: 91 ITPYDSGPYLIAWFKDGRQIPGRTSSTSLVINPVGREDRGIYQCIARRSDGDVAQGSAEL 150
T G + + R + T L + C + + +L
Sbjct: 48 FTLRSPGDKEVKSLPGADYLATRVTDTELRLQVANMSQGRTLYCTSSADHWT---NTGQL 104
Query: 151 QLGGLPYVRLIPKVTAIDGEGLSIKCPVAGYPIEEVHWEKVPPKIESFAFPFDGLPEGAR 210
G G L++ + PP++ F + +
Sbjct: 105 YFGE--------------GSKLTVLEDLK---------NVFPPEVAVFEPSEAEISHTQK 141
Query: 211 TRVICGVTHGDP-PLTIRWLKDGKPLS-------PRFPVNVSDLDSFSSLLSINSVSAA- 261
++C T P + + W +GK + + DS +L S VSA
Sbjct: 142 ATLVCLATGFYPDHVELSWWVNGKEVHSGVSTDPQPLKEQPALNDSRYALSSRLRVSATF 201
Query: 262 ---HSGEYTCVAS 271
+ C
Sbjct: 202 WQNPRNHFRCQVQ 214
>3d85_D IL-12B, interleukin-12 subunit P40, cytotoxic lymphocyte; FAB,
immune system/cytokine complex; 1.90A {Homo sapiens}
SCOP: b.1.1.4 b.1.2.1 b.1.2.1 PDB: 3d87_B* 3duh_A*
1f42_A* 1f45_A* 3hmx_A* 3qwr_A*
Length = 306
Score = 35.1 bits (79), Expect = 0.021
Identities = 15/85 (17%), Positives = 19/85 (22%), Gaps = 16/85 (18%)
Query: 2 PPILTYSFIEQTLQPGPAVSLKCIASGNPTPDIGWTLDGFELPTNNRFVIGQFVSGHGDV 61
+ PG V L C I WTLD +
Sbjct: 6 KDVYVVELDWYPDAPGEMVVLTC--DTPEEDGITWTLDQSSEVLGSG------------- 50
Query: 62 ISHVNISHVTVEDGGEYACVAENRA 86
+ I D G+Y C
Sbjct: 51 -KTLTIQVKEFGDAGQYTCHKGGEV 74
Score = 33.9 bits (76), Expect = 0.050
Identities = 19/115 (16%), Positives = 27/115 (23%), Gaps = 7/115 (6%)
Query: 88 TCEITPYDSGPYLIAWFKDGRQIPGRTSSTSLVINPVGREDRGIYQCIARRSDGDVAQGS 147
TC+ D I W D + T L I D G Y C +
Sbjct: 27 TCDTPEEDG----ITWTLDQSSEVLGSGKT-LTIQVKEFGDAGQYTCHKGGEVLSHSLLL 81
Query: 148 AELQLGGLPYVRLIPKVTAIDGEGLSIKCPVAGYPIEEVHWEKVPPKIESFAFPF 202
+ G+ I K ++C Y + F
Sbjct: 82 LHKKEDGIWSTD-ILKDQKEPKNKTFLRCEAKNYS-GRFTCWWLTTISTDLTFSV 134
Score = 30.5 bits (67), Expect = 0.54
Identities = 9/56 (16%), Positives = 12/56 (21%), Gaps = 10/56 (17%)
Query: 219 HGDPPLTIRWLKDGKPLSPRFPVNVSDLDSFSSLLSINSVSAAHSGEYTCVASNTA 274
I W D L+I +G+YTC
Sbjct: 29 DTPEEDGITWTLDQSSEVL----------GSGKTLTIQVKEFGDAGQYTCHKGGEV 74
>4acp_A IG gamma-1 chain C region; immune system, antibody, kifunensine;
HET: NAG; 2.49A {Homo sapiens} PDB: 2j6e_A*
Length = 240
Score = 34.5 bits (79), Expect = 0.028
Identities = 16/78 (20%), Positives = 27/78 (34%), Gaps = 4/78 (5%)
Query: 11 EQTLQPGPAVSLKCIASGNPTPDIG----WTLDGFELPTNNRFVIGQFVSGHGDVISHVN 66
+ TL + C+ D W +DG E+ + + V+S +
Sbjct: 33 KDTLMISRTPEVTCVVVDVSHEDPEVKFNWYVDGVEVHNAKTKPREEQYNSTYRVVSVLT 92
Query: 67 ISHVTVEDGGEYACVAEN 84
+ H +G EY C N
Sbjct: 93 VLHQDWLNGKEYKCKVSN 110
Score = 34.2 bits (78), Expect = 0.033
Identities = 16/66 (24%), Positives = 25/66 (37%), Gaps = 4/66 (6%)
Query: 211 TRVICGVTHGDPPLTIRWLKDGKPLS----PRFPVNVSDLDSFSSLLSINSVSAAHSGEY 266
T V+ V+H DP + W DG + + S+L++ + EY
Sbjct: 45 TCVVVDVSHEDPEVKFNWYVDGVEVHNAKTKPREEQYNSTYRVVSVLTVLHQDWLNGKEY 104
Query: 267 TCVASN 272
C SN
Sbjct: 105 KCKVSN 110
Score = 33.4 bits (76), Expect = 0.055
Identities = 39/227 (17%), Positives = 69/227 (30%), Gaps = 23/227 (10%)
Query: 76 GEYACVAENRAGTCEITPYDSGP--YLIAWFKDGRQIPGRTSSTSLVINPVGREDRGIYQ 133
G +C + C GP +L + RT + V+ V ED +
Sbjct: 1 GTKSCDKTHTCPPCPAPELLGGPSVFLFPPKPKDTLMISRTPEVTCVVVDVSHEDPEVK- 59
Query: 134 CIARRSDG----DVAQGSAELQLGGLPYVRLIPKVTAIDGE-GLSIKCPVAGYP------ 182
DG + E Q V + V D G KC V+
Sbjct: 60 -FNWYVDGVEVHNAKTKPREEQYNSTYRVVSVLTVLHQDWLNGKEYKCKVSNKALPAPIE 118
Query: 183 --IEEVHWEKVPPKIESFAFPFDGLPEGARTRVICGVTHGDPP-LTIRWLKDGKPLSPRF 239
I + + P++ + D L + + + C V P + + W +G+P +
Sbjct: 119 KTISKAKGQPREPQVYTLPPSRDELTKNQVS-LTCLVKGFYPSDIAVEWESNGQPENNYK 177
Query: 240 PVNVSDLD----SFSSLLSINSVSAAHSGEYTCVASNTAAQARYSSK 282
S L+++ ++C + A Y+ K
Sbjct: 178 ATPPVLDSDGSFFLYSKLTVDKSRWQQGNVFSCSVMHEALHNHYTQK 224
>3l5h_A Interleukin-6 receptor subunit beta; IG-like, FNIII, cell
membrane, disulfide bond, glycoprotein, immunoglobulin
domain, membrane, phosphoprotein; HET: NAG NDG BMA FUC;
3.60A {Homo sapiens}
Length = 589
Score = 35.0 bits (80), Expect = 0.028
Identities = 10/88 (11%), Positives = 20/88 (22%), Gaps = 15/88 (17%)
Query: 12 QTLQPGPAVSLKCIAS-------GNPTPDIGWTLDGFELPTNNRFVIGQFVSGHGDVISH 64
+Q + C+ I W + F +P +I S
Sbjct: 13 PVVQLHSNFTAVCVLKEKCMDYFHVNANYIVWKTNHFTIPKEQYTII-------NRTASS 65
Query: 65 VNISHVTVEDGGEYACVAENRAGTCEIT 92
V + + + C +
Sbjct: 66 VTFTDIA-SLNIQLTCNILTFGQLEQNV 92
Score = 33.4 bits (76), Expect = 0.087
Identities = 8/73 (10%), Positives = 23/73 (31%), Gaps = 6/73 (8%)
Query: 215 CGVTHGDPPLTIRWLKDGKPLSPRFPVNVSDLDSFSSLLSINSVSAAHSGEYTC--VASN 272
C I W + + + ++ +S ++ ++ + + + TC +
Sbjct: 31 CMDYFHVNANYIVWKTNHFTIPKE---QYTIINRTASSVTFTDIA-SLNIQLTCNILTFG 86
Query: 273 TAAQARYSSKLQV 285
Q Y +
Sbjct: 87 QLEQNVYGITIIS 99
Score = 28.4 bits (63), Expect = 2.8
Identities = 21/126 (16%), Positives = 38/126 (30%), Gaps = 16/126 (12%)
Query: 60 DVISHVNISHVTVEDGGEY--ACVAENRAGTCEITPYDSGPYLIAWFKDGRQIPGRT--- 114
D +++ V+ + CV + + C + + Y I W + IP
Sbjct: 3 DPCGYISPESPVVQLHSNFTAVCVLKEK---CMDYFHVNANY-IVWKTNHFTIPKEQYTI 58
Query: 115 --SSTSLVINPVGREDRGIYQCIAR-RSDGDVAQGSAELQLGGLPYVRLIPK-VTAIDGE 170
+ S V C + + G P PK ++ I E
Sbjct: 59 INRTASSVTFTDIASLNIQLTCNILTFGQLEQNVYGITIISGLPP---EKPKNLSCIVNE 115
Query: 171 GLSIKC 176
G ++C
Sbjct: 116 GKKMRC 121
>2vsd_A CHIR AB1; immune system receptor, FC receptor; HET: NAG NDG MAN;
1.82A {Gallus gallus}
Length = 105
Score = 32.7 bits (75), Expect = 0.031
Identities = 10/62 (16%), Positives = 17/62 (27%), Gaps = 8/62 (12%)
Query: 217 VT---HGDPP-LTIRWLKDGKPLSPRFPVNVSDLDSFSSLLSINSVSAAHSGEYTCVASN 272
VT H ++ +G + D FS + +G Y C
Sbjct: 22 VTLRCHLPRMAAWVQLWLNGTLRFDKEKDKEQDAAEFS----FAVTNLEDAGTYQCRYQV 77
Query: 273 TA 274
+
Sbjct: 78 SE 79
Score = 31.6 bits (72), Expect = 0.068
Identities = 11/53 (20%), Positives = 16/53 (30%), Gaps = 8/53 (15%)
Query: 96 SGPYLIAWF---KDGRQIPGRTSS-----TSLVINPVGREDRGIYQCIARRSD 140
P + AW +G + ED G YQC + S+
Sbjct: 27 HLPRMAAWVQLWLNGTLRFDKEKDKEQDAAEFSFAVTNLEDAGTYQCRYQVSE 79
>1bec_A 14.3.D T cell antigen receptor; T cell receptor; 1.70A {Mus
musculus} SCOP: b.1.1.1 b.1.1.2 PDB: 1jck_A 1l0x_A
1sbb_A 1l0y_A 3c6l_B 1mwa_B* 1g6r_B* 1tcr_B* 2ckb_B
2q86_B* 1lp9_F 2j8u_F 2jcc_F 2uwe_F 3mbe_D* 1d9k_B*
2aq3_A 3mc0_A 3byt_A 3bzd_A ...
Length = 238
Score = 33.8 bits (77), Expect = 0.038
Identities = 31/195 (15%), Positives = 55/195 (28%), Gaps = 47/195 (24%)
Query: 97 GPYLIAWFKDGRQ-----IPGRTSST-------SLVINPVGREDRGIYQCIARRSDGDVA 144
G LI + IP ++ SL++ +Y C +
Sbjct: 40 GLRLIHYSYGAGSTEKGDIPDGYKASRPSQEQFSLILELATPSQTSVYFCASGGG----- 94
Query: 145 QGSAELQLGGLPYVRLIPKVTAIDGEGLSIKCPVAGYPIEEVHWEKVPPKIESFAFPFDG 204
+GS Q G G L++ + + PPK+ F
Sbjct: 95 RGSYAEQFFG-------------PGTRLTVLEDLR---------QVTPPKVSLFEPSKAE 132
Query: 205 LPEGARTRVICGVTHGDP-PLTIRWLKDGKPLS---PRFPVNVSDLDSFSSLLSINSVSA 260
+ + ++C P + + W +GK + P + + L S VSA
Sbjct: 133 IANKQKATLVCLARGFFPDHVELSWWVNGKEVHSGVSTDPQAYKESNYSYCLSSRLRVSA 192
Query: 261 A----HSGEYTCVAS 271
+ C
Sbjct: 193 TFWHNPRNHFRCQVQ 207
>2aw2_A B and T lymphocyte attenuator; IGI domain, IGG domain, TNFRSF,
protein-protein complex, IMM system; HET: NAG FUL; 2.80A
{Homo sapiens} SCOP: b.1.1.1
Length = 120
Score = 32.5 bits (73), Expect = 0.044
Identities = 18/83 (21%), Positives = 29/83 (34%), Gaps = 5/83 (6%)
Query: 11 EQTLQPGPAVSLKC-IASGNPTPDIGWT-LDGFE-LPTNNRFVIGQFVSGHGDVISHVNI 67
E ++ G L+C + P + W L+G + +R + I H
Sbjct: 20 EHSILAGDPFELECPVKYCANRPHVTWCKLNGTTCVKLEDRQTSWKEEKNISFFILH--F 77
Query: 68 SHVTVEDGGEYACVAENRAGTCE 90
V D G Y C A ++ E
Sbjct: 78 EPVLPNDNGSYRCSANFQSNLIE 100
Score = 29.4 bits (65), Expect = 0.57
Identities = 13/73 (17%), Positives = 22/73 (30%), Gaps = 4/73 (5%)
Query: 208 GARTRVICGVTHGDPPLTIRWLK----DGKPLSPRFPVNVSDLDSFSSLLSINSVSAAHS 263
G + C V + + W K L R + + +L V +
Sbjct: 26 GDPFELECPVKYCANRPHVTWCKLNGTTCVKLEDRQTSWKEEKNISFFILHFEPVLPNDN 85
Query: 264 GEYTCVASNTAAQ 276
G Y C A+ +
Sbjct: 86 GSYRCSANFQSNL 98
>2j6e_L IGM, FAB light chain; autoimmune complex human IGM rheumatoid
factor IGG1-FC, immunoglobulin C region, membrane,
glycoprotein, transmembrane; HET: NAG FUL BMA MAN NDG
GAL; 3.0A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2
Length = 234
Score = 33.5 bits (77), Expect = 0.047
Identities = 19/89 (21%), Positives = 31/89 (34%), Gaps = 7/89 (7%)
Query: 189 EKVPPKIESFAFPFDGLPEGARTRVICGVTHGDP-PLTIRWLKDGKPLSPRFPVNVSDLD 247
K P + F + L T ++C ++ P +T+ W DG P+
Sbjct: 132 PKAAPSVTLFPPSSEELQANKAT-LVCLISDFFPGAVTVAWKADGAPVKAGVETTKPSKQ 190
Query: 248 S-----FSSLLSINSVSAAHSGEYTCVAS 271
S SS LS+ Y+C +
Sbjct: 191 SNNKYAASSYLSLTPEQWKSHRSYSCQVT 219
>3r08_E T-cell surface glycoprotein CD3 epsilon chain; antibody, T-cell
receptor, signalling, immune SY; 4.10A {Cricetulus
migratorius}
Length = 82
Score = 31.6 bits (71), Expect = 0.049
Identities = 12/53 (22%), Positives = 25/53 (47%), Gaps = 4/53 (7%)
Query: 88 TCEITPYDSGPYLIAWFKDGRQIPGRTSSTSLVINPVGREDRGIYQCIARRSD 140
TC + ++ + W K+G+++P + ++ + ED G Y C S+
Sbjct: 20 TCPLDSDEN----LKWEKNGQELPQKHDKHLVLQDFSEVEDSGYYVCYTPASN 68
>2e6q_A Obscurin-like protein 1; IG-like domain, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 112
Score = 32.3 bits (73), Expect = 0.052
Identities = 11/90 (12%), Positives = 26/90 (28%), Gaps = 15/90 (16%)
Query: 206 PEGARTRVICGVTHGDPPLTIRWLKDGKPLSPRFPVNVSDLDSFSSL---------LSIN 256
+G ++ W +G+ L P + + L ++
Sbjct: 21 YDGEDAVFSLDLSTIIQG---TWFLNGEELKSNEPEGQVEPGALRYRIEQKGLQHRLILH 77
Query: 257 SVSAAHSGEYTCVASNTAAQARYSSKLQVK 286
+V SG + + S+ L ++
Sbjct: 78 AVKHQDSGALVGF---SCPGVQDSAALTIQ 104
Score = 28.8 bits (64), Expect = 0.73
Identities = 12/87 (13%), Positives = 23/87 (26%), Gaps = 8/87 (9%)
Query: 12 QTLQPGPAVSLKCIASGNPTPDIGWTLDGFELPTNNRFVIGQFVSGHGDVISH-----VN 66
+ G S W L+G EL +N + + + +
Sbjct: 18 VQVYDGEDAVFSLDLSTIIQGT--WFLNGEELKSNEPEGQVEPGALRYRIEQKGLQHRLI 75
Query: 67 ISHVTVED-GGEYACVAENRAGTCEIT 92
+ V +D G + +T
Sbjct: 76 LHAVKHQDSGALVGFSCPGVQDSAALT 102
>1oga_E TRBC1, T-cell receptor beta chain C region; immune system/receptor,
immune system/receptor/complex, TCR, MHC,
immunodominance, FLU, complex; 1.40A {Homo sapiens}
SCOP: b.1.1.1 b.1.1.2 PDB: 2vlm_E 2vlk_E 2vlj_E 2vlr_E
2xna_B 2xn9_B 2axh_A 2axj_A 3scm_D* 3sda_D* 3sdc_D*
3sdd_D* 3qi9_D* 3mff_B* 2ak4_E 3he7_D* 2eyr_B 3pqy_E
3kxf_E 2cde_B ...
Length = 252
Score = 33.4 bits (76), Expect = 0.054
Identities = 29/199 (14%), Positives = 47/199 (23%), Gaps = 53/199 (26%)
Query: 97 GPYLIAWFKDGRQ-----IPGR-------TSSTSLVINPVGREDRGIYQCIARRSDGDVA 144
G LI + + I S L + + Y C + +
Sbjct: 44 GLRLIYYSQIVNDFQKGDIAEGYSVSREKKESFPLTVTSAQKNPTAFYLC----ASSSRS 99
Query: 145 QGSAELQLGGLPYVRLIPKVTAIDGEGLSIKCPVAGYPIEEVHWEKVPPKIESFAFPFDG 204
G V K PP++ F
Sbjct: 100 SYEQYFGPGTRLTVTEDLKNVF-------------------------PPEVAVFEPSEAE 134
Query: 205 LPEGARTRVICGVTHGDP-PLTIRWLKDGKPLS-------PRFPVNVSDLDSFSSLLSIN 256
+ + ++C T P + + W +GK + + DS SL S
Sbjct: 135 ISHTQKATLVCLATGFYPDHVELSWWVNGKEVHSGVSTDPQPLKEQPALNDSRYSLSSRL 194
Query: 257 SVSAA----HSGEYTCVAS 271
VSA + C
Sbjct: 195 RVSATFWQNPRNHFRCQVQ 213
>2c1o_A IGK-C protein; FAB fragment, enantioselective, finrozole, immune
system, antibody, ENA11His antibody, immunoglobulin
domain; 2.75A {Mus musculus}
Length = 254
Score = 33.2 bits (76), Expect = 0.059
Identities = 39/170 (22%), Positives = 58/170 (34%), Gaps = 44/170 (25%)
Query: 112 GRTSST--SLVINPVGREDRGIYQCIARRSDGDVAQGSAELQLGGLPYVRLIPKVTAIDG 169
G S T +L I+ V ED GIY C +Q P T G
Sbjct: 106 GSGSGTDFTLKISRVEAEDLGIYYC---------------VQGSHFPP-------TFGAG 143
Query: 170 EGLSIKCPVAGYPIEEVHWEKVPPKIESFAFPFDGLPEGARTRVICGVTHGDP-PLTIRW 228
L +K A P + F + L G + V+C + + P + ++W
Sbjct: 144 TKLELKRADA------------APTVSIFPPSSEQLTSGGAS-VVCFLNNFYPKDINVKW 190
Query: 229 LKDGKPLSPRFPVNVSDLD------SFSSLLSINSVSAAHSGEYTCVASN 272
DG + +D D S SS L++ YTC A++
Sbjct: 191 KIDGSERQNGVLNSWTDQDSKDSTYSMSSTLTLTKDEYERHNSYTCEATH 240
>1kgc_D T-cell receptor alpha chain; LC13 clone, immune system; 1.50A {Homo
sapiens} SCOP: b.1.1.1 b.1.1.2 PDB: 1mi5_D 3kpr_D 3kps_D
3o6f_C 3t0e_C 3pqy_D 2esv_D 3dxa_D 3dx9_A
Length = 206
Score = 32.6 bits (74), Expect = 0.077
Identities = 24/210 (11%), Positives = 61/210 (29%), Gaps = 67/210 (31%)
Query: 88 TCEITPYDSGPYLIAWFKDGRQIPGR-------------------------TSSTSLVIN 122
C + Y+ W+ RQ+P + S++L+++
Sbjct: 20 PCNHSTISGTDYI-HWY---RQLPSQGPEYVIHGLTSNVNNRMASLAIAEDRKSSTLILH 75
Query: 123 PVGREDRGIYQCIARRSDGDVAQGSAELQLGGLPYVRLIPKVTAIDGEGLSIKCPVAGYP 182
D +Y CI + G +L G + + P +
Sbjct: 76 RATLRDAAVYYCILPLAGGT---SYGKLTFGQGTILTVHPNI------------------ 114
Query: 183 IEEVHWEKVPPKIESFAFPFDGLPEGARTRVICGVTHGDP-PLTIRWLKDGKPLSPRFPV 241
+ P + + + +C T D + ++ + +
Sbjct: 115 ------QNPDPAVYQLR------DSKSSDKSVCLFTDFDSQTNVSQSKDSDVYITDKTVL 162
Query: 242 NVSDLDSFSSLLSINSVSAAHSGEYTCVAS 271
++ +D S ++V+ ++ ++ C +
Sbjct: 163 DMRSMDF----KSNSAVAWSNKSDFACANA 188
>4ei6_B Vbeta16 XV19 type II natural killer T cell recept variable domain,
human constant...; natural killer T cell receptor,
immune system; 1.60A {Mus musculus} PDB: 4ei5_D 4elk_B
4elm_F* 2esv_E 3ffc_E 3utt_E 3utp_E* 3uts_E 3qjf_B
3qjh_B 3qiw_D* 3qiu_D
Length = 245
Score = 33.1 bits (75), Expect = 0.079
Identities = 29/200 (14%), Positives = 53/200 (26%), Gaps = 53/200 (26%)
Query: 97 GPYLIAWFKDGRQ------IPGRTSST-------SLVINPVGREDRGIYQCIARRSDGDV 143
+ F +G+ + S +L I P ED +Y C +
Sbjct: 43 QMEFLVNFYNGKVMEKSKLFKDQFSVERPDGSYFTLKIQPTALEDSAVYFCASSFWGAYA 102
Query: 144 AQGSAELQLGGLPYVRLIPKVTAIDGEGLSIKCPVAGYPIEEVHWEKVPPKIESFAFPFD 203
+ G L++ + PP++ F
Sbjct: 103 -------------------EQFFGPGTRLTVLEDLK---------NVFPPEVAVFEPSEA 134
Query: 204 GLPEGARTRVICGVTHGDP-PLTIRWLKDGKPLS-------PRFPVNVSDLDSFSSLLSI 255
+ + ++C T P + + W +GK + + DS +L S
Sbjct: 135 EISHTQKATLVCLATGFYPDHVELSWWVNGKEVHSGVCTDPQPLKEQPALNDSRYALSSR 194
Query: 256 NSVSAA----HSGEYTCVAS 271
VSA + C
Sbjct: 195 LRVSATFWQNPRNHFRCQVQ 214
>2ds4_A Tripartite motif protein 45; beta-sandwich, immunoglobulin-like
fold, filamin domain, structural genomics, NPPSFA; NMR
{Homo sapiens}
Length = 113
Score = 31.7 bits (72), Expect = 0.093
Identities = 21/106 (19%), Positives = 36/106 (33%), Gaps = 16/106 (15%)
Query: 15 QPGPAVSLKCIASGNPTPDIGWTLDGFELPTNNRFVI------GQFVSGHGDVISHVNIS 68
G KC+ G D+ + F + G+ + GD + V +
Sbjct: 5 SSGEVDPAKCVLQG---EDLHRAREKQT----ASFTLLCKDAAGEIMGRGGDNVQ-VAVV 56
Query: 69 HVTVEDGGEYACVAENRAGTCEI--TPYDSGPYLIAWFKDGRQIPG 112
+D V +N+ GT I TP + G Y + + + G
Sbjct: 57 PKDKKDSPVRTMVQDNKDGTYYISYTPKEPGVYTVWVCIKEQHVQG 102
>1xiw_B T-cell surface glycoprotein CD3 delta chain; CD3-epsilon,
CD3-delta, UCHT1-SCFV, immunoglobulin fold,
antibody-antigen complex; 1.90A {Homo sapiens} SCOP:
b.1.1.4
Length = 79
Score = 30.7 bits (69), Expect = 0.11
Identities = 11/60 (18%), Positives = 21/60 (35%), Gaps = 8/60 (13%)
Query: 101 IAWFKDGRQIPGRTSSTSLVINPVGREDRGIYQCIARRSDGDVAQGSAELQLGGLPYVRL 160
I W + + T L + + RGIY+C + +Q+ + R+
Sbjct: 20 ITWVEGTVGTL-LSDITRLDLGKRILDPRGIYRC---NGTDIYKDKESTVQV----HYRM 71
>1olz_A Semaphorin 4D; developmental protein, CD100, beta-propeller, PSI
domain, IG-like domain, extracellular receptor,
neurogenesis; 2.0A {Homo sapiens} SCOP: b.1.1.4
b.69.12.1 g.16.2.1 PDB: 3ol2_A*
Length = 663
Score = 32.8 bits (73), Expect = 0.11
Identities = 10/49 (20%), Positives = 15/49 (30%), Gaps = 3/49 (6%)
Query: 222 PPLTIRWLKDGKPLSPRFPVNVSDLDSFSSLLSINSVSAAHSGEYTCVA 270
+ W L P L I ++S SG Y C++
Sbjct: 560 NLARVFWKFQNGVLKAESPKYG---LMGRKNLLIFNLSEGDSGVYQCLS 605
Score = 32.8 bits (73), Expect = 0.12
Identities = 11/72 (15%), Positives = 27/72 (37%), Gaps = 8/72 (11%)
Query: 101 IAWFKDGRQIPGRTSSTS------LVINPVGREDRGIYQCIARRSDGDVAQGSAELQLGG 154
+ W + + L+I + D G+YQC++ + + ++
Sbjct: 564 VFWKFQNGVLKAESPKYGLMGRKNLLIFNLSEGDSGVYQCLSE--ERVKNKTVFQVVAKH 621
Query: 155 LPYVRLIPKVTA 166
+ V+++PK
Sbjct: 622 VLEVKVVPKPVV 633
Score = 32.4 bits (72), Expect = 0.19
Identities = 14/66 (21%), Positives = 25/66 (37%), Gaps = 8/66 (12%)
Query: 20 VSLKCIASGNPTPDIGWTLDGFELPTNNRFVIGQFVSGHGDVISHVNISHVTVEDGGEYA 79
LKC N + W L + + G +++ I +++ D G Y
Sbjct: 551 AELKCSQKSNL-ARVFWKFQNGVLKAESP---KYGLMGRKNLL----IFNLSEGDSGVYQ 602
Query: 80 CVAENR 85
C++E R
Sbjct: 603 CLSEER 608
>2pnd_A V-SET and immunoglobulin domain containing 4; complement receptor,
IG-like domain, immune system; 1.00A {Mus musculus} PDB:
2icc_A 2ice_S* 2icf_S*
Length = 119
Score = 31.1 bits (70), Expect = 0.13
Identities = 19/93 (20%), Positives = 26/93 (27%), Gaps = 29/93 (31%)
Query: 89 CEITPYDS-GPYLIAWFK----------------DGRQIP---GRTS-------STSLVI 121
C P L+ W D Q GR SL I
Sbjct: 23 CIYDPLRGYRQVLVKWLVRHGSDSVTIFLRDSTGDHIQQAKYRGRLKVSHKVPGDVSLQI 82
Query: 122 NPVGREDRGIYQC--IARRSDGDVAQGSAELQL 152
N + +DR Y C + DG+ ++L
Sbjct: 83 NTLQMDDRNHYTCEVTWQTPDGNQVIRDKIIEL 115
>3e0g_A Leukemia inhibitory factor receptor; IG domain, cytokine binding
homology region (CHR), cell MEMB disease mutation,
glycoprotein, membrane; HET: NAG MAN FUC; 3.10A {Homo
sapiens}
Length = 483
Score = 32.5 bits (73), Expect = 0.15
Identities = 14/99 (14%), Positives = 26/99 (26%), Gaps = 11/99 (11%)
Query: 1 TPPILTYSFIE-QTLQPGPAVSLKCIASGNPTPDIGWTLDGFELPTNNRFVIGQFVSGHG 59
P T F + + + G ++ C++ + + + + V
Sbjct: 196 IPDSQTKVFPQDKVILVGSDITFCCVSQEKVLSALIGHTNCPLIHLDGENV--------- 246
Query: 60 DVISHVNISHVTVEDGGEYACVAENRAGTCEITPYDSGP 98
I NIS +N GT Y
Sbjct: 247 -AIKIRNISVSASSGTNVVFTTEDNIFGTVIFAGYPPDT 284
>1zvo_C Myeloma immunoglobulin D delta; immunoglobulin fold, antibody,
immune system; NMR {Homo sapiens}
Length = 512
Score = 32.7 bits (74), Expect = 0.15
Identities = 31/234 (13%), Positives = 57/234 (24%), Gaps = 42/234 (17%)
Query: 83 ENRAGTCEITPYDSGPYLIAW-----------FKDGRQIPGRTSSTSLVINPVGREDRGI 131
C IT Y + W F + ++ ++S + P+ + +G
Sbjct: 151 SPVVLACLITGYHPTSVTVTWYMGTQSQPQRTFPEIQRRDSYYMTSSQLSTPLQQWRQGE 210
Query: 132 YQCIARRSDGD-----------------VAQGSAELQLGGLPYVRLIPKVTAIDGEGLSI 174
Y+C+ + + + G L P T G G
Sbjct: 211 YKCVVQHTASKSKKEIFRWPESPKAQASSVPTAQPQAEGSLAKATTAPATTRNTGRGGEE 270
Query: 175 KCPVAGYP--------IEEVHWEKVPPKIESFAFPFDGLPEGARTRVICGVT-HGDPPLT 225
K E P + L + C V
Sbjct: 271 KKKEKEKEEQEERETKTPECPSHTQPLGVYLLTPAVQDLWLRDKATFTCFVVGSDLKDAH 330
Query: 226 IRWLKDGKPLSPRFPVNVSDLD-----SFSSLLSINSVSAAHSGEYTCVASNTA 274
+ W GK + + + S S L++ TC ++ +
Sbjct: 331 LTWEVAGKVPTGGVEEGLLERHSNGSQSQHSRLTLPRSLWNAGTSVTCTLNHPS 384
>3gbl_A BETA2-microglobulin; immune response, immunoglobulin domain, MHC I,
secreted, immune system; 2.10A {Ctenopharyngodon idella}
Length = 97
Score = 30.4 bits (69), Expect = 0.19
Identities = 13/48 (27%), Positives = 23/48 (47%), Gaps = 3/48 (6%)
Query: 190 KVPPKIESFAFPFDGLPEGARTRVICGVTHGDPP-LTIRWLKDGKPLS 236
PKI+ + G +IC V+ PP ++I LK+G+ ++
Sbjct: 2 VSSPKIQ--VYSHYPGEYGKENTLICYVSGFHPPDISIELLKNGEVIA 47
>2edo_A CD48 antigen; beta-sandwich, IG-fold, B-lymphocyte activation
marker blast-1, BCM1 surface antigen, leukocyte antigen
MEM-102, TCT.1; NMR {Homo sapiens}
Length = 121
Score = 30.7 bits (69), Expect = 0.22
Identities = 15/67 (22%), Positives = 26/67 (38%), Gaps = 4/67 (5%)
Query: 87 GTCEITPYDSGPYLIAW--FKDGRQIPGRTSSTSLVINPVGREDRGIYQCIARRSDGDVA 144
+I +DS FK ++ S +L I+ V +ED Y + G+
Sbjct: 43 FDQKIVEWDSRKSKYFESKFKGRVRLD--PQSGALYISKVQKEDNSTYIMRVLKKTGNEQ 100
Query: 145 QGSAELQ 151
+ +LQ
Sbjct: 101 EWKIKLQ 107
Score = 29.9 bits (67), Expect = 0.37
Identities = 13/83 (15%), Positives = 20/83 (24%), Gaps = 12/83 (14%)
Query: 215 CGVTHGDPPLTIRWLKDGKPLSPRFPVNVS-----------DLDSFSSLLSINSVSAAHS 263
+ + + W + S LD S L I+ V +
Sbjct: 26 ISESLPENYKQLTWFYTFDQKIVEWDSRKSKYFESKFKGRVRLDPQSGALYISKVQKEDN 85
Query: 264 GEYTCVASNTAAQARYSS-KLQV 285
Y + KLQV
Sbjct: 86 STYIMRVLKKTGNEQEWKIKLQV 108
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 31.7 bits (71), Expect = 0.28
Identities = 16/87 (18%), Positives = 33/87 (37%), Gaps = 17/87 (19%)
Query: 5 LTYSFIEQTLQPGPAVSLKCIASGNPTPDIGWTLDGFE------LPTNNRFV--IGQFVS 56
L + F+EQ ++ S ASG+ + L ++ P R V I F+
Sbjct: 498 LDFRFLEQKIR---HDSTAWNASGSILNTLQ-QLKFYKPYICDNDPKYERLVNAILDFLP 553
Query: 57 GHGDVI---SHVNISHVTV--EDGGEY 78
+ + + ++ + + ED +
Sbjct: 554 KIEENLICSKYTDLLRIALMAEDEAIF 580
>3nl4_L Antigen binding fragment, immunoglobulin IGG - LI; FAB, rabbit,
conformation-specific, amyloid, immune system; 1.54A
{Oryctolagus cuniculus}
Length = 213
Score = 31.0 bits (71), Expect = 0.31
Identities = 14/66 (21%), Positives = 26/66 (39%), Gaps = 6/66 (9%)
Query: 213 VICGVTHGDPPLTIRWLKDGKPLSPRFPVNVSDLD------SFSSLLSINSVSAAHSGEY 266
++C P +T+ W DG + + + + + SS L++ S EY
Sbjct: 134 IVCVANKYFPDVTVTWEVDGTTQTTGIENSKTPQNSADCTYNLSSTLTLTSTEYNSHKEY 193
Query: 267 TCVASN 272
TC +
Sbjct: 194 TCKVTQ 199
>1nfd_E H57 FAB; complex (immunoreceptor-immunoglobulin), complex
(immunorece immunoglobulin) complex; HET: NAG NDG; 2.80A
{Mus musculus} SCOP: b.1.1.1 b.1.1.2
Length = 212
Score = 30.7 bits (70), Expect = 0.35
Identities = 12/65 (18%), Positives = 22/65 (33%), Gaps = 5/65 (7%)
Query: 213 VICGVTHGDP-PLTIRWLKDGKP----LSPRFPVNVSDLDSFSSLLSINSVSAAHSGEYT 267
++C V P T+ W +G + P SS LS+ + +
Sbjct: 133 LVCLVNDFYPGSATVTWKANGATINDGVKTTKPSKQGQNYMTSSYLSLTADQWKSHNRVS 192
Query: 268 CVASN 272
C ++
Sbjct: 193 CQVTH 197
>2oyp_A Hepatitis A virus cellular receptor 2; TIM-3, T-cell immunoglobulin
mucin, signaling protein; 1.95A {Mus musculus} PDB:
3kaa_A*
Length = 109
Score = 29.5 bits (66), Expect = 0.44
Identities = 19/88 (21%), Positives = 27/88 (30%), Gaps = 28/88 (31%)
Query: 92 TPYDSGPYLIAWFK---------------DGRQIPGRTSS------------TSLVINPV 124
P + W K D R + + SS SL+I V
Sbjct: 20 LPTSGTLVPMCWGKGFCPWSQCTNELLRTDERNVTYQKSSRYQLKGDLNKGDVSLIIKNV 79
Query: 125 GREDRGIYQCIARRSDGDVAQGSAELQL 152
+D G Y C + G + EL+L
Sbjct: 80 TLDDHGTYCCRIQFP-GLMNDKKLELKL 106
>2dic_A Filamin-B; beta-sandwich, immunoglobulin-like fold, filamin domain,
structural genomics, NPPSFA; NMR {Homo sapiens} SCOP:
b.1.18.10
Length = 105
Score = 29.4 bits (66), Expect = 0.45
Identities = 22/101 (21%), Positives = 33/101 (32%), Gaps = 17/101 (16%)
Query: 15 QPGPAVSLKCIASGNPTPDIGWTLDGFELPTNNRFVIGQFVSGHGDVISHVNISHVTVED 74
G + A G P + N F + +G G + +TVE
Sbjct: 5 SSGGCQPSRVQAQG---PGLKEAFTNKP----NVFTVVTRGAGIGGL-------GITVEG 50
Query: 75 GGEYAC-VAENRAGTCEI--TPYDSGPYLIAWFKDGRQIPG 112
E +N+ G+C P+ G Y + G IPG
Sbjct: 51 PSESKINCRDNKDGSCSAEYIPFAPGDYDVNITYGGAHIPG 91
>1ypz_E T cell receptor delta, beta-2-microglobulin; H2-T22 protein, T cell
receptor delta, immune system; HET: NAG MAN FUC; 3.40A
{Mus musculus} SCOP: b.1.1.1 b.1.1.2
Length = 207
Score = 30.3 bits (68), Expect = 0.46
Identities = 32/205 (15%), Positives = 50/205 (24%), Gaps = 63/205 (30%)
Query: 94 YDSGPYLIAWFKDGRQIPGR--------------------------TSSTSLVINPVGRE 127
+ + + WF RQ ++L I E
Sbjct: 25 FTTTMRSVQWF---RQNSRGSLISLFYLASGTKENGRLKSAFDSKERRYSTLHIRDAQLE 81
Query: 128 DRGIYQCIARRSDGDVAQGSAELQLGGLPYVRLIPKVTAIDGEGLSIKCPVAGYPIEEVH 187
D G Y C A + Y K+ G ++
Sbjct: 82 DSGTYFC-AADTWH-----------ISEGYELGTDKLVFGQGTQVT-------------- 115
Query: 188 WEKVPPKIESFAFPFDGLPEGARTRVICGVTHGDP-PLTIRWLKDGKPLSPRFPVNVSDL 246
V PK + A P + + V C V P +TI K + + +S
Sbjct: 116 ---VEPKSQPPAKPSVFIMKNGTN-VACLVKDFYPKEVTISLRSSKKIVEFDPAIVISP- 170
Query: 247 DSFSSLLSINSVSAAHSGEYTCVAS 271
S + + S TC
Sbjct: 171 SGKYSAVKLGQYGD--SNSVTCSVQ 193
Score = 28.8 bits (64), Expect = 1.7
Identities = 12/62 (19%), Positives = 18/62 (29%)
Query: 220 GDPPLTIRWLKDGKPLSPRFPVNVSDLDSFSSLLSINSVSAAHSGEYTCVASNTAAQARY 279
+++ +L G + R + S L I SG Y C A Y
Sbjct: 40 RGSLISLFYLASGTKENGRLKSAFDSKERRYSTLHIRDAQLEDSGTYFCAADTWHISEGY 99
Query: 280 SS 281
Sbjct: 100 EL 101
>3rgh_A Filamin-A; cell adhesion, cytoskeleton-complex, disease mutation,
immun like, cytoskeleton, actin-binding, cell junction,
shape; HET: CME; 2.44A {Homo sapiens}
Length = 100
Score = 29.3 bits (66), Expect = 0.47
Identities = 10/47 (21%), Positives = 17/47 (36%), Gaps = 3/47 (6%)
Query: 69 HVTVEDGGEYAC-VAENRAGTCEI--TPYDSGPYLIAWFKDGRQIPG 112
+ E G + ++ GT I P G Y + G+ +P
Sbjct: 44 EICSEAGLPAEVYIQDHGDGTHTITYIPLCPGAYTVTIKYGGQPVPN 90
>1lk2_B Beta-2-microglobulin; class I MHC-peptide complex, high resolution,
anisotropic AN refinement, immune system; HET: NAG FUC;
1.35A {Mus musculus} SCOP: b.1.1.2 PDB: 1bqh_B 1cd1_B
1fo0_L* 1fzj_B* 1fzm_B* 1fzo_B* 1g6r_L 1fzk_B* 1g7q_B*
1hoc_B 1inq_B 1juf_B 1k8d_B 1kbg_L* 1kj2_L* 1kj3_L
1kpu_B* 1kpv_B* 1ld9_B 1ldp_L* ...
Length = 99
Score = 29.2 bits (66), Expect = 0.48
Identities = 13/48 (27%), Positives = 22/48 (45%), Gaps = 3/48 (6%)
Query: 190 KVPPKIESFAFPFDGLPEGARTRVICGVTHGDPP-LTIRWLKDGKPLS 236
+ P+I+ + G + C VT PP + I+ LK+GK +
Sbjct: 2 QKTPQIQ--VYSRHPPENGKPNILNCYVTQFHPPHIEIQMLKNGKKIP 47
>3nfj_J T cell receptor beta chain; immunoglobulin family, immune system;
2.68A {Homo sapiens} PDB: 3hg1_E
Length = 245
Score = 30.6 bits (69), Expect = 0.50
Identities = 32/200 (16%), Positives = 53/200 (26%), Gaps = 53/200 (26%)
Query: 97 GPYLIAWFKDGRQ----IPGR-------TSSTSLVINPVGREDRGIYQCIARRSDGDVAQ 145
G L+ + Q +P L + D G Y C A
Sbjct: 43 GLQLLFYSVGIGQISSEVPQNLSASRPQDRQFILSSKKLLLSDSGFYLC-AWSVSVGAGV 101
Query: 146 GSAELQLGGLPYVRLIPKVTAIDGEG--LSIKCPVAGYPIEEVHWEKVPPKIESFAFPFD 203
T GEG L++ + + PP++ F
Sbjct: 102 P------------------TIYFGEGSWLTVVEDLN---------KVFPPEVAVFEPSEA 134
Query: 204 GLPEGARTRVICGVTHGDP-PLTIRWLKDGKPLS-------PRFPVNVSDLDSFSSLLSI 255
+ + ++C T P + + W +GK + + DS +L S
Sbjct: 135 EISHTQKATLVCLATGFFPDHVELSWWVNGKEVHSGVCTDPQPLKEQPALNDSRYALSSR 194
Query: 256 NSVSAA----HSGEYTCVAS 271
VSA + C
Sbjct: 195 LRVSATFWQNPRNHFRCQVQ 214
>1q0x_L FAB 9B1, light chain; anti-morphine antibody, FAB fragment, immune
system; HET: PG4; 1.60A {Mus musculus} SCOP: b.1.1.1
b.1.1.2 PDB: 1q0y_L* 1ngp_L* 1ngq_L 3ks0_L* 1gig_L
2vir_A 2vis_A* 2vit_A 1sm3_L 4a6y_L 1ind_L* 1ine_L*
1yuh_L* 2zpk_L 3rhw_K* 3ri5_K* 3ria_K* 3rif_K* 1mfe_L*
1mfb_L* ...
Length = 212
Score = 30.3 bits (69), Expect = 0.53
Identities = 14/66 (21%), Positives = 28/66 (42%), Gaps = 6/66 (9%)
Query: 213 VICGVTHGDPP-LTIRWLKDGKPLSPRFPVNVSDLDS-----FSSLLSINSVSAAHSGEY 266
++C +T P +T+ W DG P++ S SS L++ + + Y
Sbjct: 135 LVCTITDFYPGVVTVDWKVDGTPVTAGMETTQPSKQSNNKYMASSYLTLTARAWERHSSY 194
Query: 267 TCVASN 272
+C ++
Sbjct: 195 SCQVTH 200
>3bkj_L WO2 IGG2A FAB fragment light chain kappa; abeta, FAB, WO2,
alzheimer'S disease, immunotherapies, APP, immune
system; 1.59A {Mus musculus} PDB: 3bkc_L 3bkm_L 2zuq_B*
1h3p_L
Length = 252
Score = 30.4 bits (69), Expect = 0.54
Identities = 16/72 (22%), Positives = 28/72 (38%), Gaps = 7/72 (9%)
Query: 208 GARTRVICGVTHGDP-PLTIRWLKDGKPLSPRFPVNVSDLD------SFSSLLSINSVSA 260
V+C + + P + ++W DG + +D D S SS L++
Sbjct: 165 SGGASVVCFLNNFYPKDINVKWKIDGSERQNGVLNSWTDQDSKDSTYSMSSTLTLTKDEY 224
Query: 261 AHSGEYTCVASN 272
YTC A++
Sbjct: 225 ERHNSYTCEATH 236
>1ncn_A T lymphocyte activation antigen CD86; IG V, beta strands, immune
system; 2.70A {Homo sapiens} SCOP: b.1.1.1 PDB: 1i85_A
Length = 110
Score = 29.0 bits (65), Expect = 0.69
Identities = 10/27 (37%), Positives = 17/27 (62%), Gaps = 4/27 (14%)
Query: 112 GRTSST----SLVINPVGREDRGIYQC 134
GRTS +L ++ + +D+G+YQC
Sbjct: 60 GRTSFDSDSWTLRLHNLQIKDKGLYQC 86
>1ntl_A CRRY-IG; immunology, complement, glycoprotein, SCR, CCP, immune
system; NMR {Mus musculus}
Length = 551
Score = 30.4 bits (68), Expect = 0.79
Identities = 12/69 (17%), Positives = 24/69 (34%), Gaps = 4/69 (5%)
Query: 210 RTRVICGVTHGDPPLTIRWLKD-GKPLSPRFPVNVSDLD---SFSSLLSINSVSAAHSGE 265
T V+ ++ DP + W D + + + + S L I + E
Sbjct: 363 VTCVVVDISKDDPEVQFSWFVDDVEVHTAQTQPREEQFNSTFRSVSELPIMHQDWLNGKE 422
Query: 266 YTCVASNTA 274
+ C ++ A
Sbjct: 423 FKCRVNSAA 431
Score = 29.6 bits (66), Expect = 1.4
Identities = 13/66 (19%), Positives = 25/66 (37%)
Query: 21 SLKCIASGNPTPDIGWTLDGFELPTNNRFVIGQFVSGHGDVISHVNISHVTVEDGGEYAC 80
+ I+ +P W +D E+ T + + +S + I H +G E+ C
Sbjct: 366 VVVDISKDDPEVQFSWFVDDVEVHTAQTQPREEQFNSTFRSVSELPIMHQDWLNGKEFKC 425
Query: 81 VAENRA 86
+ A
Sbjct: 426 RVNSAA 431
>3omz_A Human vdelta1 gamma delta T cell receptor delta1A; immunoglobulin
fold, immune surveillance of cell stress PROT A/B,
MIC-A/B binding, epithelium; 3.04A {Homo sapiens}
Length = 259
Score = 29.8 bits (67), Expect = 0.79
Identities = 26/201 (12%), Positives = 51/201 (25%), Gaps = 38/201 (18%)
Query: 91 ITPYDSGPYLIAWFKDGRQIPGRTSSTS--LVINPVGREDRGIYQCIARRSDGDVAQGSA 148
Y S L + G+ ++ + +++ + D G+Y C A
Sbjct: 51 YDSYTSSVVLESGISPGKYDTYGSTRKNLRMILRNLIENDSGVYYC-ATWDQN------- 102
Query: 149 ELQLGGLPYVRLIPKVTAIDGEGLSIKCPVAGYPIEEVHWEKVPPKIESFAFPFDGLPEG 208
+ D +G + + S +P
Sbjct: 103 ----YYKKLFGSGTSLVVTDKQGSADDAKKDAAKKDGAQKVTQAQSSVS-------MPVR 151
Query: 209 ARTRVICGVTHGDPPLTIRWLK----------------DGKPLSPRFPVNVSDLDSFSSL 252
+ C I W K + S R+ VN +
Sbjct: 152 KAVTLNCLYETSWWSYYIFWYKRLPSKEMIFLIRQGSDEQNAKSGRYSVNFKKAAKSVA- 210
Query: 253 LSINSVSAAHSGEYTCVASNT 273
L+I+++ S +Y C +
Sbjct: 211 LTISALQLEDSAKYFCALGES 231
>3r0n_A Poliovirus receptor-related protein 2; IG-domain, cell-adhesion
molecule, virus entry receptor, STR genomics,
PSI-biology; 1.30A {Homo sapiens}
Length = 128
Score = 29.2 bits (65), Expect = 0.81
Identities = 19/119 (15%), Positives = 39/119 (32%), Gaps = 22/119 (18%)
Query: 158 VRLIPKVTAIDGEGLSIKC----PVAGYPIEEVHWEKVPPKIESFAFPFDGLPEGARTRV 213
V+++P+V G + + C PV G I V W++ P +
Sbjct: 6 VQVLPEVRGQLGGTVELPCHLLPPVPGLYISLVTWQRPDA------------PANHQNVA 53
Query: 214 ICGVTHGDPPLTIRWLKD----GKPLSPRFPVNVSDLDSFSSLLSINSVSAAHSGEYTC 268
G + + + ++L + L+++ ++ G YTC
Sbjct: 54 AFHPKMGPSFPSPKPGSERLSFVSAKQSTGQDTEAELQDAT--LALHGLTVEDEGNYTC 110
Score = 27.3 bits (60), Expect = 3.2
Identities = 7/32 (21%), Positives = 12/32 (37%)
Query: 104 FKDGRQIPGRTSSTSLVINPVGREDRGIYQCI 135
G+ +L ++ + ED G Y C
Sbjct: 80 QSTGQDTEAELQDATLALHGLTVEDEGNYTCE 111
Score = 26.1 bits (57), Expect = 9.0
Identities = 10/33 (30%), Positives = 13/33 (39%), Gaps = 9/33 (27%)
Query: 67 ISHVTVEDGGEYACVAENRAGTCEITPYDSGPY 99
+ +TVED G Y TCE + G
Sbjct: 97 LHGLTVEDEGNY---------TCEFATFPKGSV 120
>2dia_A Filamin-B; beta-sandwich, immunoglobulin-like fold, filamin domain,
structural genomics, NPPSFA; NMR {Homo sapiens} SCOP:
b.1.18.10
Length = 113
Score = 28.6 bits (64), Expect = 0.84
Identities = 19/99 (19%), Positives = 32/99 (32%), Gaps = 13/99 (13%)
Query: 16 PGPAVSLKCIASGNPTPDIGWTLDGFELPTNNRFVIGQFVSGHGDVISHVNISHVTVEDG 75
GP K +ASG P + G + +G G + + V+
Sbjct: 6 SGPFDPSKVVASG---PGLEHGKVGEA----GLLSVDCSEAGPGAL----GLEAVSDSGT 54
Query: 76 GEYACVAENRAGTCEI--TPYDSGPYLIAWFKDGRQIPG 112
+ N+ GT + P +G Y + G +P
Sbjct: 55 KAEVSIQNNKDGTYAVTYVPLTAGMYTLTMKYGGELVPH 93
>3mj8_L Stimulatory hamster antibody HL4E10 FAB light CHA; hamster IGG,
immune system; 2.94A {Cricetulus migratorius} PDB:
3mj9_L*
Length = 213
Score = 29.7 bits (67), Expect = 0.84
Identities = 27/174 (15%), Positives = 47/174 (27%), Gaps = 43/174 (24%)
Query: 110 IPGRTS------STSLVINPVGREDRGIYQCIARRSDGDVAQGSAELQLGGLPYVRLIPK 163
IP S +L I+ D Y C +
Sbjct: 57 IPDHFSGSNSGNMATLTISKAQAGDEADYYCQSWDGTNSAWVF----------------- 99
Query: 164 VTAIDGEGLSIKCPVAGYPIEEVHWEKVPPKIESFAFPFDGLPEGARTRVICGVTHGDP- 222
G K V G P P + F + L T ++C + P
Sbjct: 100 -------GSGTKVTVLGQP-------NAAPSVTLFPPSSEELKTNQAT-LVCMINGFYPA 144
Query: 223 PLTIRWLKDGKPLS----PRFPVNVSDLDSFSSLLSINSVSAAHSGEYTCVASN 272
+ + W DG P++ P +S L++ + + + C ++
Sbjct: 145 DVAVTWEADGTPITQGVKTTQPSKSDSKYMATSYLTMTADAWKSRNTFICKVTH 198
>3c6l_A TCR 2W20 alpha chain; TCR-PMHC complex; 3.40A {Mus musculus} SCOP:
b.1.1.1 b.1.1.2
Length = 185
Score = 29.5 bits (66), Expect = 0.93
Identities = 13/51 (25%), Positives = 19/51 (37%), Gaps = 1/51 (1%)
Query: 236 SPRFPVNVSDLDSFSSLLSINSVSAAHSGEYTCVASNTAAQARYSSKLQVK 286
RF + + + SL I S Y C AS+ ++L VK
Sbjct: 58 DGRFTIFFNKREKKFSL-HIADSQPGDSATYFCAASDNRIFFGDGTQLVVK 107
Score = 27.1 bits (60), Expect = 4.9
Identities = 13/91 (14%), Positives = 20/91 (21%), Gaps = 17/91 (18%)
Query: 13 TLQPGPAVSLKCIASGNPTPDIGW--------------TLDGFELPTNNRFVIGQFVSGH 58
T+ G L C + W + RF F
Sbjct: 11 TVWEGETAILNCSYEDSTFDYFPWYHQFPGESPALLIAIRPVSNKKEDGRF-TIFFNKRE 69
Query: 59 GDVISHVNISHVTVEDGGEYACVAENRAGTC 89
++I+ D Y C A +
Sbjct: 70 KK--FSLHIADSQPGDSATYFCAASDNRIFF 98
>4dzb_B Vbeta2 (MAIT T cell receptor); immune system; 1.70A {Homo sapiens}
PDB: 1ymm_E* 3o4l_E* 3o6f_D 3t0e_D 1ktk_E 3mfg_B 2ij0_E
Length = 246
Score = 29.4 bits (66), Expect = 0.99
Identities = 31/201 (15%), Positives = 53/201 (26%), Gaps = 54/201 (26%)
Query: 97 GPYLIAWFKDGRQ-------IPGRTSST-------SLVINPVGREDRGIYQCIARRSDGD 142
L+A +G + + +L + ED Y C + R+ GD
Sbjct: 43 SLMLMATSNEGSKATYEQGVEKDKFLINHASLTLSTLTVTSAHPEDSSFYIC-SARTSGD 101
Query: 143 VAQGSAELQLGGLPYVRLIPKVTAIDGEGLSIKCPVAGYPIEEVHWEKVPPKIESFAFPF 202
G G + E PP++ F
Sbjct: 102 FG--------------------EQFFGPG-------TRLTVLEDLKNVFPPEVAVFEPSE 134
Query: 203 DGLPEGARTRVICGVTHGDP-PLTIRWLKDGKPLS-------PRFPVNVSDLDSFSSLLS 254
+ + ++C T P + + W +GK + + DS +L S
Sbjct: 135 AEISHTQKATLVCLATGFYPDHVELSWWVNGKEVHSGVCTDPQPLKEQPALNDSRYALSS 194
Query: 255 INSVSAA----HSGEYTCVAS 271
VSA + C
Sbjct: 195 RLRVSATFWQNPRNHFRCQVQ 215
>1q8m_A Triggering receptor expressed on myeloid cells 1; V-type IG-like
domain, immunoglobulin-like, immune system receptor;
HET: GSH; 2.60A {Homo sapiens} SCOP: b.1.1.1
Length = 127
Score = 28.6 bits (64), Expect = 1.0
Identities = 14/93 (15%), Positives = 27/93 (29%), Gaps = 22/93 (23%)
Query: 11 EQTLQPGPAVSLKCIASGNP--TPDIGW-----------------TLDGFELPTNNRFVI 51
+ L+ G + +KC + + W R ++
Sbjct: 13 KYELKEGQTLDVKCDYTLEKFASSQKAWQIIRDGEMPKTLACTERPSKNSHPVQVGRIIL 72
Query: 52 GQFVSGHGDVISHVNISHVTVEDGGEYACVAEN 84
+ + V + ++ VED G Y CV
Sbjct: 73 EDYHDHG---LLRVRMVNLQVEDSGLYQCVIYQ 102
>2i24_N NEW antigen receptor PBLA8; immunoglobulin fold, immune system;
1.35A {Ginglymostoma cirratum} PDB: 2i25_N 2i27_N 2i26_N
Length = 121
Score = 28.5 bits (64), Expect = 1.0
Identities = 17/96 (17%), Positives = 33/96 (34%), Gaps = 13/96 (13%)
Query: 13 TLQPGPAVSLKCIASG--NPTPDIGW-------TLDGFELPTNNRFVIGQFVSGHGDVIS 63
T + G ++++ C+ W + + R+V G
Sbjct: 11 TKETGESLTINCVVRDSRCVLSTGYWYRKPPGSRNE-ESISDGGRYVETVN-RGSKSF-- 66
Query: 64 HVNISHVTVEDGGEYACVAENRAGTCEITPYDSGPY 99
+ I+ +TV+D G Y C E+R G+ +
Sbjct: 67 SLRINDLTVKDSGTYRCKPESRYGSYDAVCAALNDQ 102
Score = 27.3 bits (61), Expect = 3.2
Identities = 15/74 (20%), Positives = 22/74 (29%), Gaps = 22/74 (29%)
Query: 88 TCEITPYDSGPYLIAWFKDGRQIPGRTS-------------------STSLVINPVGRED 128
C + W+ R+ PG + S SL IN + +D
Sbjct: 21 NCVVRDSRCVLSTGYWY---RKPPGSRNEESISDGGRYVETVNRGSKSFSLRINDLTVKD 77
Query: 129 RGIYQCIARRSDGD 142
G Y+C G
Sbjct: 78 SGTYRCKPESRYGS 91
>2wbj_D OB TCR; transmembrane, immune response, T cell receptor, MHC II,
MEM receptor, molecular mimicry, multiple sclerosis,
immune SYS autoimmunity; HET: NAG BMA MAN; 3.00A {Homo
sapiens}
Length = 279
Score = 29.5 bits (66), Expect = 1.0
Identities = 30/201 (14%), Positives = 52/201 (25%), Gaps = 52/201 (25%)
Query: 97 GPYLIAWFKDGRQ-------IPGRTSST-------SLVINPVGREDRGIYQCIARRSDGD 142
L+A +G + + +L + ED Y C + R
Sbjct: 66 SLMLMATSNEGSKATYEQGVEKDKFLINHASLTLSTLTVTSAHPEDSSFYIC-SARDLTS 124
Query: 143 VAQGSAELQLGGLPYVRLIPKVTAIDGEGLSIKCPVAGYPIEEVHWEKVPPKIESFAFPF 202
A G L++ + PP++ F
Sbjct: 125 GANNEQ----------------FFGPGTRLTVTEDLK---------NVFPPEVAVFEPSE 159
Query: 203 DGLPEGARTRVICGVTHGDP-PLTIRWLKDGKPLS-------PRFPVNVSDLDSFSSLLS 254
+ + ++C T P + + W +GK + + DS SL S
Sbjct: 160 AEISHTQKATLVCLATGFYPDHVELSWWVNGKEVHSGVSTDPQPLKEQPALNDSRYSLSS 219
Query: 255 INSVSAA----HSGEYTCVAS 271
VSA + C
Sbjct: 220 RLRVSATFWQNPRNHFRCQVQ 240
>4esk_A LAIR-1, mlair1, leukocyte-associated immunoglobulin-like receptor;
IG-like domain, domain swapping, collagen receptor,
structural genomics; 1.76A {Mus musculus}
Length = 102
Score = 28.1 bits (63), Expect = 1.1
Identities = 14/59 (23%), Positives = 22/59 (37%), Gaps = 4/59 (6%)
Query: 227 RWLKDGKPLSPRFPVNVSDLDSFSSLLSINSVSAAHSGEYTCVASNTAAQARYSSKLQV 285
R KDG + D F I V+ +G Y+C+ S + S L++
Sbjct: 43 RLEKDGSTFMEKSTEPYKTEDEFE----IGPVNETITGHYSCIYSKGITWSERSKTLEL 97
Score = 25.8 bits (57), Expect = 8.5
Identities = 11/59 (18%), Positives = 18/59 (30%), Gaps = 5/59 (8%)
Query: 88 TCEITPYDSGPYLIAWFKDGRQIPGRTSST-----SLVINPVGREDRGIYQCIARRSDG 141
C + ++ KDG +++ I PV G Y CI +
Sbjct: 29 VCSYSDKHDLYNMVRLEKDGSTFMEKSTEPYKTEDEFEIGPVNETITGHYSCIYSKGIT 87
>1nez_G T-cell surface glycoprotein CD8 alpha chain; immune system; HET:
NAG; 2.10A {Synthetic} SCOP: b.1.1.1 PDB: 1bqh_G*
3b9k_A* 2atp_A* 2arj_R
Length = 128
Score = 28.7 bits (64), Expect = 1.1
Identities = 19/137 (13%), Positives = 31/137 (22%), Gaps = 34/137 (24%)
Query: 3 PILTYSFIEQTLQPGPAVSLKCIASGNPTPDIGWTLDGFELPTNNRFVIGQFVSGHGDVI 62
P L + + G V L C G+ + W S
Sbjct: 5 PELRIFPKKMDAELGQKVDLVCEVLGSVSQGCSWL---------------FQNSSSKLPQ 49
Query: 63 SHVNISHVTVEDGGEYACVAENRAGTCEITPYDSGPYLIAWFKDGRQIPGRTSSTSLVIN 122
+ Y A + +S A + L +N
Sbjct: 50 PTFVV----------YM--ASSHNKITWDEKLNSSKLFSAMRDTN-------NKYVLTLN 90
Query: 123 PVGREDRGIYQCIARRS 139
+E+ G Y C +
Sbjct: 91 KFSKENEGYYFCSVISN 107
>1xau_A B- and T-lymphocyte attenuator; IG domain, beta sandwich,
structural genomics, PSI, protein structure initiative;
1.80A {Mus musculus} SCOP: b.1.1.4
Length = 122
Score = 28.7 bits (63), Expect = 1.1
Identities = 11/84 (13%), Positives = 29/84 (34%), Gaps = 4/84 (4%)
Query: 11 EQTLQPGPAVSLKC-IASGNPTPDIGWT-LDGFE-LPTNNRFVIGQFVSGHGDV-ISHVN 66
+ + G ++C + P++ W +G +P + + V + ++
Sbjct: 23 KHSAWTGELFKIECPVKYCVHRPNVTWCKHNGTIWVPLEVGPQLYTSWEENRSVPVFVLH 82
Query: 67 ISHVTVEDGGEYACVAENRAGTCE 90
+ + D G Y+C +
Sbjct: 83 FKPIHLSDNGSYSCSTNFNSQVIN 106
Score = 27.5 bits (60), Expect = 2.6
Identities = 13/74 (17%), Positives = 27/74 (36%), Gaps = 7/74 (9%)
Query: 208 GARTRVICGVTHGDPPLTIRWLK----DGKPLSPRFPVNVSDLDSFSS---LLSINSVSA 260
G ++ C V + + W K PL + S ++ S +L +
Sbjct: 29 GELFKIECPVKYCVHRPNVTWCKHNGTIWVPLEVGPQLYTSWEENRSVPVFVLHFKPIHL 88
Query: 261 AHSGEYTCVASNTA 274
+ +G Y+C + +
Sbjct: 89 SDNGSYSCSTNFNS 102
>1k5n_B Beta-2-microglobulin, light chain; MHC(major histocompatibility
complex), HLA(human leukocyte A immune system; 1.09A
{Homo sapiens} SCOP: b.1.1.2 PDB: 1a9b_B 1b0g_B 1b0r_B
1bd2_B 1cg9_B 1a9e_B 1duy_B 1eey_B 1eez_B 1efx_B 1gzp_B*
1gzq_B* 1hhg_B 1hhh_B 1hhi_B 1hhj_B 1hhk_B 1i1f_B 1i1y_B
1duz_B* ...
Length = 100
Score = 28.1 bits (63), Expect = 1.2
Identities = 10/48 (20%), Positives = 20/48 (41%), Gaps = 3/48 (6%)
Query: 190 KVPPKIESFAFPFDGLPEGARTRVICGVTHGDPP-LTIRWLKDGKPLS 236
+ PKI+ + G + C V+ P + + LK+G+ +
Sbjct: 3 QRTPKIQ--VYSRHPAENGKSNFLNCYVSGFHPSDIEVDLLKNGERIE 48
>2q87_A CMRF35-H antigen; all-beta, immunoglobulin, IG-superfamily, IG-V,
NKP44-like, natural killer cell IG-like receptor,
inhibitory receptor; 1.70A {Homo sapiens}
Length = 110
Score = 28.3 bits (63), Expect = 1.3
Identities = 16/86 (18%), Positives = 26/86 (30%), Gaps = 19/86 (22%)
Query: 15 QPGPAVSLKC---------------IASGNPTPDIGWTLDGFELPTNNRFVIGQFVSGHG 59
G ++S++C I T G N R I + +
Sbjct: 9 PVGGSLSVQCPYEKEHRTLNKYWCRPPQIFLCDKIVET-KGSAGKRNGRVSI-RDSPANL 66
Query: 60 DVISHVNISHVTVEDGGEYACVAENR 85
V + ++T ED G Y C +
Sbjct: 67 SF--TVTLENLTEEDAGTYWCGVDTP 90
>1a64_A CD2; domain swapping, hinge loop, oligomer evolution; 2.00A {Rattus
norvegicus} SCOP: b.1.1.1 PDB: 1a7b_A 1cdc_B 1a6p_A
1t6w_A
Length = 97
Score = 27.7 bits (61), Expect = 1.4
Identities = 11/46 (23%), Positives = 19/46 (41%), Gaps = 4/46 (8%)
Query: 100 LIAWFKDGRQIPGRT----SSTSLVINPVGREDRGIYQCIARRSDG 141
L+A FK + ++ L I + R+D G Y ++G
Sbjct: 38 LVAEFKRKPFLKSGAFEILANGDLKIKNLTRDDSGTYNVTVYSTNG 83
>2d7m_A Filamin-C; beta-sandwich, immunoglobulin-like fold, filamin domain,
structural genomics, NPPSFA; NMR {Homo sapiens} SCOP:
b.1.18.10
Length = 115
Score = 28.2 bits (63), Expect = 1.5
Identities = 24/92 (26%), Positives = 35/92 (38%), Gaps = 11/92 (11%)
Query: 23 KCIASGNPTPDIGWTLDGFELPTNNRFVIGQFVSGHGDVISHVNISHVTVEDGGEYACVA 82
K ASG P + + LP F I +G G + + + E + A +
Sbjct: 13 KVRASG---PGLNASGIPASLPVE--FTIDARDAGEGLL----TVQILDPEGKPKKANIR 63
Query: 83 ENRAGTCEI--TPYDSGPYLIAWFKDGRQIPG 112
+N GT + P SG Y I G +IP
Sbjct: 64 DNGDGTYTVSYLPDMSGRYTITIKYGGDEIPY 95
>3s96_B 3B5H10 FAB light chain; huntingtin, immune system; 1.90A {Mus
musculus} PDB: 2qhr_L 3ffd_B 4dcq_A
Length = 218
Score = 28.8 bits (65), Expect = 1.8
Identities = 13/64 (20%), Positives = 27/64 (42%), Gaps = 5/64 (7%)
Query: 213 VICGVTHGDP-PLTIRWLKDGKPLSPRF----PVNVSDLDSFSSLLSINSVSAAHSGEYT 267
++C +++ P +T+ W +G P++ P + SS L + S +T
Sbjct: 141 LVCLISNFSPSGVTVAWKANGTPITQGVDTSNPTKEGNKFMASSFLHLTSDQWRSHNSFT 200
Query: 268 CVAS 271
C +
Sbjct: 201 CQVT 204
>3kgr_A LAIR-1, hlair1, leukocyte-associated immunoglobulin-like receptor;
IG-like domain, cell membrane, glycoprotein; 1.80A {Homo
sapiens} PDB: 3rp1_A
Length = 106
Score = 27.7 bits (62), Expect = 1.8
Identities = 12/53 (22%), Positives = 21/53 (39%), Gaps = 4/53 (7%)
Query: 219 HGDPPLTIRWL-KDGKPLSPRFPVNVSDLDSFSSL--LSINSVSAAHSGEYTC 268
G + L ++ + + +VS S I+SVS ++G Y C
Sbjct: 31 RGPVGVQTFRLERESRS-TYNDTEDVSQASPSESEARFRIDSVSEGNAGPYRC 82
Score = 27.0 bits (60), Expect = 2.7
Identities = 9/37 (24%), Positives = 14/37 (37%)
Query: 105 KDGRQIPGRTSSTSLVINPVGREDRGIYQCIARRSDG 141
+D Q S I+ V + G Y+CI +
Sbjct: 53 EDVSQASPSESEARFRIDSVSEGNAGPYRCIYYKPPK 89
>1sq2_N Novel antigen receptor; immunoglobulin fold, protein-protein
complex, hydrolase/immune system complex; 1.45A
{Ginglymostoma cirratum} SCOP: b.1.1.1 PDB: 1t6v_N
Length = 113
Score = 27.7 bits (62), Expect = 1.9
Identities = 15/72 (20%), Positives = 22/72 (30%), Gaps = 22/72 (30%)
Query: 89 CEITPYDSGPYLIAWFKDGRQIPGRTS-------------------STSLVINPVGREDR 129
C + W+ R+ G + S SL IN + ED
Sbjct: 22 CVLRDASYALGSTCWY---RKKSGEGNEESISKGGRYVETVNSGSKSFSLRINDLTVEDG 78
Query: 130 GIYQCIARRSDG 141
G Y+C + G
Sbjct: 79 GTYRCGLGVAGG 90
Score = 27.7 bits (62), Expect = 2.1
Identities = 20/98 (20%), Positives = 33/98 (33%), Gaps = 14/98 (14%)
Query: 13 TLQPGPAVSLKCIASGNPTPD--IGW-------TLDGFELPTNNRFVIGQFVSGHGDVIS 63
T + G ++++ C+ W + + R+V G
Sbjct: 11 TKETGESLTINCVLRDASYALGSTCWYRKKSGEGNE-ESISKGGRYVETVN---SGSKSF 66
Query: 64 HVNISHVTVEDGGEYACVAENRAGTCEITPYDSGPYLI 101
+ I+ +TVEDGG Y C G C+ S Y
Sbjct: 67 SLRINDLTVEDGGTYRCGLGVAGGYCD-YALCSSRYAE 103
>3p73_B Beta-2-microglobulin; IG-like C1-type (immunoglobulin-like) domain,
histocompatibi antigen, immune system; HET: 16A; 1.32A
{Gallus gallus} PDB: 3p77_B* 3bev_B 3bew_B 3jvg_C*
2yez_B 2yf5_B 2yf6_B 2yf1_B*
Length = 99
Score = 27.3 bits (61), Expect = 2.0
Identities = 11/45 (24%), Positives = 20/45 (44%), Gaps = 3/45 (6%)
Query: 191 VPPKIESFAFPFDGLPEGARTRVICGVTHGDPP-LTIRWLKDGKP 234
+ PK++ + G + + C PP ++I +KDG P
Sbjct: 3 LTPKVQ--VYSRFPASAGTKNVLNCFAAGFHPPKISITLMKDGVP 45
>1pko_A Myelin oligodendrocyte glycoprotein; IGV-domain, immune system;
1.45A {Rattus norvegicus} SCOP: b.1.1.1 PDB: 1pkq_E
3csp_A 1py9_A
Length = 139
Score = 28.0 bits (62), Expect = 2.2
Identities = 10/35 (28%), Positives = 13/35 (37%), Gaps = 3/35 (8%)
Query: 118 SLVINPVGREDRGIYQCIARRSDGDVAQGSAELQL 152
+L I V D G Y C R A ++L
Sbjct: 86 ALRIQNVRFSDEGGYTCFFRDHSYQ---EEAAVEL 117
>2bp3_A Filamin A; structural protein, cytoskeleton/complex, actin binding
protein, cytoskeleton, complex; 2.32A {Homo sapiens}
SCOP: b.1.18.10 PDB: 2aav_A
Length = 97
Score = 27.3 bits (61), Expect = 2.4
Identities = 11/46 (23%), Positives = 19/46 (41%), Gaps = 3/46 (6%)
Query: 70 VTVED-GGEYACVAENRAGTCEI--TPYDSGPYLIAWFKDGRQIPG 112
+ +E +N+ GTC + P G Y I + + +PG
Sbjct: 41 LAIEGPSKAEISCTDNQDGTCSVSYLPVLPGDYSILVKYNEQHVPG 86
>2dib_A Filamin-B; beta-sandwich, immunoglobulin-like fold, filamin domain,
structural genomics, NPPSFA; NMR {Homo sapiens} SCOP:
b.1.18.10
Length = 128
Score = 27.5 bits (61), Expect = 2.7
Identities = 11/51 (21%), Positives = 20/51 (39%), Gaps = 2/51 (3%)
Query: 64 HVNISHVTVEDGGEYACVAENRAGTCEI--TPYDSGPYLIAWFKDGRQIPG 112
H+ V +N GT ++ TP++ G +++ D IP
Sbjct: 58 HIKAHIANPSGASTECFVTDNADGTYQVEYTPFEKGLHVVEVTYDDVPIPN 108
>4ei6_A Valpha1 XV19 type II natural killer T cell recept variable domain,
human constant...; natural killer T cell receptor,
immune system; 1.60A {Mus musculus} PDB: 4ei5_C 4elk_A
4elm_E* 3qeu_A 1ao7_D 3qdj_D 3qdg_D 3qfj_D 1qsf_D
1qse_D* 3d39_D* 3d3v_D* 3h9s_D 3pwp_D 2gj6_D 3utp_D*
3uts_D 1qrn_D 3hg1_D 3rdt_A ...
Length = 208
Score = 28.1 bits (62), Expect = 2.8
Identities = 17/76 (22%), Positives = 27/76 (35%), Gaps = 12/76 (15%)
Query: 99 YLIAWFKDGRQIPGRTSST--------SLVINPVGREDRGIYQCIARRSDGDVAQGSAEL 150
L++ F DG + GR ++ SL I D +Y C A + + L
Sbjct: 47 ALMSIFSDGDKKEGRFTAHLNKASLHVSLHIRDSQPSDSALYFCAASEQNN----YAQGL 102
Query: 151 QLGGLPYVRLIPKVTA 166
G V + P +
Sbjct: 103 TFGLGTRVSVFPYIQN 118
Score = 26.9 bits (59), Expect = 5.8
Identities = 13/50 (26%), Positives = 18/50 (36%), Gaps = 1/50 (2%)
Query: 222 PPLTIRWLKDGKPLSPRFPVNVSDLDSFSSLLSINSVSAAHSGEYTCVAS 271
P + DG RF +++ S L I + S Y C AS
Sbjct: 45 PKALMSIFSDGDKKEGRFTAHLNK-ASLHVSLHIRDSQPSDSALYFCAAS 93
>2d7n_A Filamin-C; beta-sandwich, immunoglobulin-like fold, filamin domain,
structural genomics, NPPSFA; NMR {Homo sapiens} SCOP:
b.1.18.10
Length = 93
Score = 27.0 bits (60), Expect = 2.8
Identities = 10/34 (29%), Positives = 17/34 (50%), Gaps = 2/34 (5%)
Query: 81 VAENRAGTCEI--TPYDSGPYLIAWFKDGRQIPG 112
+ +N+ GT + P + G + + DG IPG
Sbjct: 40 ITDNKDGTITVRYAPTEKGLHQMGIKYDGNHIPG 73
>1bii_B Beta-2 microglobulin, MHC class I H-2DD; complex (MHC I/peptide),
major histocompatibility complex class I DD,
transmembrane, glycoprotein; 2.40A {Mus musculus} SCOP:
b.1.1.2
Length = 119
Score = 27.4 bits (61), Expect = 3.0
Identities = 13/48 (27%), Positives = 22/48 (45%), Gaps = 3/48 (6%)
Query: 190 KVPPKIESFAFPFDGLPEGARTRVICGVTHGDPP-LTIRWLKDGKPLS 236
+ P+I+ + G + C VT PP + I+ LK+GK +
Sbjct: 22 QKTPQIQ--VYSRHPPENGKPNILNCYVTQFHPPHIEIQMLKNGKKIP 67
>1neu_A Myelin P0 protein; structural protein, glycoprotein, transmembrane,
phosphorylation, immunoglobulin fold, signal; 1.90A
{Rattus norvegicus} SCOP: b.1.1.1
Length = 124
Score = 27.2 bits (60), Expect = 3.1
Identities = 8/35 (22%), Positives = 18/35 (51%), Gaps = 1/35 (2%)
Query: 118 SLVINPVGREDRGIYQCIARRSDGDVAQGSAELQL 152
S+VI+ + D G + C + D+ ++++ L
Sbjct: 82 SIVIHNLDYSDNGTFTCDVKNP-PDIVGKTSQVTL 115
>2dlg_A Filamin-B; beta-sandwich, immunoglobulin-like fold, filamin domain,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: b.1.18.10
Length = 102
Score = 27.1 bits (60), Expect = 3.2
Identities = 8/47 (17%), Positives = 17/47 (36%), Gaps = 3/47 (6%)
Query: 69 HVTVEDGGEYAC-VAENRAGTCEI--TPYDSGPYLIAWFKDGRQIPG 112
HVT G + + + P + G + ++ G+ + G
Sbjct: 36 HVTSPSGRVTEAEIVPMGKNSHCVRFVPQEMGVHTVSVKYRGQHVTG 82
>3o81_A Beta-2-microglobulin; IG-like C1-type (immunoglobulin-like) domain,
histocompatibi antigen, MHC class I molecule from B21
chicken, immune SYST; 2.00A {Gallus gallus}
Length = 119
Score = 27.0 bits (60), Expect = 3.2
Identities = 11/47 (23%), Positives = 21/47 (44%), Gaps = 3/47 (6%)
Query: 190 KVPPKIESFAFPFDGLPEGARTRVICGVTHGDPP-LTIRWLKDGKPL 235
+ PK++ + G + + C PP ++I +KDG P+
Sbjct: 22 DLTPKVQ--VYSRFPASAGTKNVLNCFAAGFHPPKISITLMKDGVPM 66
>3noi_A Natural cytotoxicity triggering receptor 3; immune system, innate
immunity, immunoglobulin-like I2 type natural killer
cell activation; HET: 1PG; 1.84A {Homo sapiens} PDB:
3pv6_B*
Length = 120
Score = 27.2 bits (60), Expect = 3.2
Identities = 9/33 (27%), Positives = 10/33 (30%)
Query: 115 SSTSLVINPVGREDRGIYQCIARRSDGDVAQGS 147
L I V D IY C V G+
Sbjct: 79 HQAELHIRDVRGHDASIYVCRVEVLGLGVGTGN 111
>2d9c_A Signal-regulatory protein beta-1; beta-sandwich, SIRP-beta-1,
CD172B antigen, structural genomics, NPPSFA; NMR {Homo
sapiens}
Length = 136
Score = 27.2 bits (61), Expect = 3.2
Identities = 24/97 (24%), Positives = 38/97 (39%), Gaps = 19/97 (19%)
Query: 16 PGPAVSLKCIASGN-PTPDIGWTLDGFELPTNNRFVIGQFVSGHGDVISHV--------- 65
G + +L+C + P I W F R +I GH ++ V
Sbjct: 22 AGESATLRCAMTSLIPVGPIMW----FRGAGAGRELIYNQKEGHFPRVTTVSELTKRNNL 77
Query: 66 ----NISHVTVEDGGEYACVAENRAGTCEITPYDSGP 98
+IS++T D G Y CV + R G+ + + SG
Sbjct: 78 DFSISISNITPADAGTYYCV-KFRKGSPDDVEFKSGA 113
>4ety_A LAIR-1, mlair1, leukocyte-associated immunoglobulin-like receptor;
IG-like domain, extra celluar domain, domain swappin
nysgrc, structural genomics; 1.90A {Mus musculus}
Length = 118
Score = 27.0 bits (60), Expect = 3.3
Identities = 12/81 (14%), Positives = 27/81 (33%), Gaps = 13/81 (16%)
Query: 216 GVTHGDPPLTIR-----------WLKDGKPLSPRFPVNVSDLDSFSSLLSINSVSAAHSG 264
++ G +T+ ++ K S + + I V+ +G
Sbjct: 19 MISQGTF-VTVVCSYSDKHDLYNMVRLEKDGSTFMEKSTEPYKTEDEF-EIGPVNETITG 76
Query: 265 EYTCVASNTAAQARYSSKLQV 285
Y+C+ S + S L++
Sbjct: 77 HYSCIYSKGITWSERSKTLEL 97
Score = 25.8 bits (57), Expect = 9.3
Identities = 11/59 (18%), Positives = 18/59 (30%), Gaps = 5/59 (8%)
Query: 88 TCEITPYDSGPYLIAWFKDGRQIPGRTSS-----TSLVINPVGREDRGIYQCIARRSDG 141
C + ++ KDG +++ I PV G Y CI +
Sbjct: 29 VCSYSDKHDLYNMVRLEKDGSTFMEKSTEPYKTEDEFEIGPVNETITGHYSCIYSKGIT 87
>3udw_C Poliovirus receptor; PVR tigit IGSF signal transduction immunology,
IGSF, cell SU receptor signalling, glycosylation,
membrane protein; HET: NAG; 2.90A {Homo sapiens}
Length = 118
Score = 27.1 bits (60), Expect = 3.7
Identities = 8/44 (18%), Positives = 14/44 (31%)
Query: 107 GRQIPGRTSSTSLVINPVGREDRGIYQCIARRSDGDVAQGSAEL 150
++ + SL + + ED G Y C+ L
Sbjct: 69 AARLGAELRNASLRMFGLRVEDEGNYTCLFVTFPQGSRSVDIWL 112
Score = 25.9 bits (57), Expect = 9.3
Identities = 16/135 (11%), Positives = 35/135 (25%), Gaps = 31/135 (22%)
Query: 158 VRLIPKVTAIDGEGLSIKC-----PVAGYPIEEVHWEKVPPKIESFAF-PFDGLPEGART 211
V+ +V G+ +++ C + + ++ W + F G
Sbjct: 4 VQAPTQVPGFLGDSVTLPCYLQVPNMEVTHVSQLTWARHGESGSMAVFHQTQGPSYSESK 63
Query: 212 RVICGVTHGDPPLTIRWLKDGKPLSPRFPVNVSDLDSFSSLLSINSVSAAHSGEYTC-VA 270
R+ F + ++ L + + G YTC
Sbjct: 64 RL------------------------EFVAARLGAELRNASLRMFGLRVEDEGNYTCLFV 99
Query: 271 SNTAAQARYSSKLQV 285
+ L+V
Sbjct: 100 TFPQGSRSVDIWLRV 114
>2qsq_A Carcinoembryonic antigen-related cell adhesion MO; glycoprotein,
GPI-anchor, immunoglobulin DOMA lipoprotein, membrane;
1.95A {Homo sapiens} PDB: 2qst_A 2ver_N* 2gk2_A
Length = 111
Score = 26.8 bits (59), Expect = 3.7
Identities = 11/49 (22%), Positives = 20/49 (40%), Gaps = 3/49 (6%)
Query: 106 DGRQIPGR---TSSTSLVINPVGREDRGIYQCIARRSDGDVAQGSAELQ 151
G GR + SL+I + + D G Y +SD + + + +
Sbjct: 58 PGPAYSGREIIYPNASLLIQNIIQNDAGFYTLHVIKSDLVNEEATGQFR 106
>2jju_A Signal regulatory protein beta-1; immunoglobulin domain,
immunoglobulin superfamily, immune system,
transmembrane, paired receptor; 1.19A {Homo sapiens}
PDB: 2jjv_A 2uv3_A* 2jjt_A* 2jjs_A* 2jjw_A
Length = 127
Score = 26.9 bits (60), Expect = 3.8
Identities = 24/97 (24%), Positives = 38/97 (39%), Gaps = 19/97 (19%)
Query: 16 PGPAVSLKCIASGN-PTPDIGWTLDGFELPTNNRFVIGQFVSGHGDVISHVN-------- 66
G + +L+C + P I W F R +I GH ++ V+
Sbjct: 17 AGESATLRCAMTSLIPVGPIMW----FRGAGAGRELIYNQKEGHFPRVTTVSELTKRNNL 72
Query: 67 -----ISHVTVEDGGEYACVAENRAGTCEITPYDSGP 98
IS++T D G Y CV + R G+ + + SG
Sbjct: 73 DFSISISNITPADAGTYYCV-KFRKGSPDDVEFKSGA 108
>2e9j_A Filamin-B; beta-sandwich, immunoglobulin-like fold, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens}
Length = 119
Score = 26.8 bits (59), Expect = 4.2
Identities = 13/50 (26%), Positives = 21/50 (42%), Gaps = 2/50 (4%)
Query: 65 VNISHVTVEDGGEYACVAENRAGTCEI--TPYDSGPYLIAWFKDGRQIPG 112
+ + E + A V +N+ GT + P +G Y+I G IP
Sbjct: 56 LAVQITDQEGKPKRAIVHDNKDGTYAVTYIPDKTGRYMIGVTYGGDDIPL 105
>2p24_B H-2 class II histocompatibility antigen, A-U beta; MHC, I-AU,
immunoglobulin fold, MBP, immune system; 2.15A {Mus
musculus} PDB: 3cup_B* 1es0_B 3rdt_D 1lnu_B* 3c5z_D
3c60_D 3c6l_D
Length = 259
Score = 27.6 bits (61), Expect = 4.3
Identities = 16/77 (20%), Positives = 27/77 (35%), Gaps = 6/77 (7%)
Query: 46 NNRFVIGQFVSGHGDVISHVNISHVTVEDGGEYACVAENRAGTCEITPYDSGPYLIAWFK 105
N S +V IS E + + C +T + + WF+
Sbjct: 131 YNYEETEVPTSLRRLEQPNVVISLSRTEALNHHNTL------VCSVTDFYPAKIKVRWFR 184
Query: 106 DGRQIPGRTSSTSLVIN 122
+G++ SST L+ N
Sbjct: 185 NGQEETVGVSSTQLIRN 201
>2c9a_A Receptor-type tyrosine-protein phosphatase MU; glycoprotein,
hydrolase, immunoglobulin domain; HET: NAG MAN NDG FUL;
2.7A {Homo sapiens} SCOP: b.1.1.4 b.29.1.25
Length = 259
Score = 27.5 bits (60), Expect = 4.4
Identities = 17/89 (19%), Positives = 26/89 (29%)
Query: 62 ISHVNISHVTVEDGGEYACVAENRAGTCEITPYDSGPYLIAWFKDGRQIPGRTSSTSLVI 121
+ V + C A R + A K+ + R S +
Sbjct: 168 FLRIQNVEVNAGQFATFQCSAIGRTVAGDRLWLQGIDVRDAPLKEIKVTSSRRFIASFNV 227
Query: 122 NPVGREDRGIYQCIARRSDGDVAQGSAEL 150
+ D G Y+C+ R G AEL
Sbjct: 228 VNTTKRDAGKYRCMIRTEGGVGISNYAEL 256
>3fzq_A Putative hydrolase; YP_001086940.1, putative haloacid
dehalogenase-like hydrolas structural genomics, joint
center for structural genomics; HET: MSE; 2.10A
{Clostridium difficile}
Length = 274
Score = 27.6 bits (62), Expect = 4.5
Identities = 6/54 (11%), Positives = 20/54 (37%), Gaps = 7/54 (12%)
Query: 24 CIASGNPTPDIGWTLDGFELP---TNNRFVIGQFVSGHGDVISHVNISHVTVED 74
I +G I + + G ++ HG+++ + + + +++
Sbjct: 42 VICTGRSMGTIQDDVLSLGVDGYIAGG----GNYIQYHGELLYNQSFNQRLIKE 91
>2dj4_A Filamin-B; beta-sandwich, immunoglobulin-like fold, filamin domain,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: b.1.18.10
Length = 108
Score = 26.6 bits (59), Expect = 4.5
Identities = 13/47 (27%), Positives = 19/47 (40%), Gaps = 3/47 (6%)
Query: 69 HVTVEDGGEYAC-VAENRAGTCEI--TPYDSGPYLIAWFKDGRQIPG 112
V G V +N GT + TP GPY+++ +IP
Sbjct: 48 RVLGPRGLVEPVNVVDNGDGTHTVTYTPSQEGPYMVSVKYADEEIPR 94
>3cnk_A Filamin-A; FLNA24, X-RAY crystalography, homodimer, acetylation,
actin-binding, cytoplasm, cytoskeleton, disease
mutation, phosphoprotein; 1.65A {Homo sapiens}
Length = 89
Score = 26.2 bits (58), Expect = 4.9
Identities = 16/92 (17%), Positives = 29/92 (31%), Gaps = 13/92 (14%)
Query: 23 KCIASGNPTPDIGWTLDGFELPTNNRFVIGQFVSGHGDVISHVNISHVTVEDGGEYACVA 82
K +A G G L + + F + +G+ ++ V+ E+ V
Sbjct: 1 KVVAKGL-----G--LSKAYVGQKSSFTVDCSKAGNNMLLVGVHGPRTPCEEIL----VK 49
Query: 83 ENRAGTCEI--TPYDSGPYLIAWFKDGRQIPG 112
+ + D G Y + IPG
Sbjct: 50 HVGSRLYSVSYLLKDKGEYTLVVKWGHEHIPG 81
>2dmc_A Filamin-B; beta-sandwich, immunoglobulin-like fold, filamin domain,
structural genomics, NPPSFA; NMR {Homo sapiens} SCOP:
b.1.18.10
Length = 116
Score = 26.7 bits (59), Expect = 5.0
Identities = 8/47 (17%), Positives = 17/47 (36%), Gaps = 3/47 (6%)
Query: 69 HVTVEDGGEYAC-VAENRAGTCEI--TPYDSGPYLIAWFKDGRQIPG 112
+ G + C + I P + G +L++ K+G +
Sbjct: 50 SIKAPSGRDEPCLLKRLPNNHIGISFIPREVGEHLVSIKKNGNHVAN 96
>2ee9_A Filamin-B; beta-sandwich, immunoglobulin-like fold, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens}
Length = 95
Score = 26.3 bits (58), Expect = 5.0
Identities = 12/55 (21%), Positives = 20/55 (36%), Gaps = 7/55 (12%)
Query: 65 VNISHVTVE----DGGEYAC-VAENRAGTCEI--TPYDSGPYLIAWFKDGRQIPG 112
V +T E G + +N+ GT + P + G + + G IP
Sbjct: 27 VRKGEITGEVHMPSGKTATPEIVDNKDGTVTVRYAPTEVGLHEMHIKYMGSHIPE 81
>3khq_A B-cell antigen receptor complex-associated protei chain; CD79B,
CD79A, IG-beta, BCR, IG domain, V-SET, immunoglobulin
protein binding; HET: FLC GSH; 1.70A {Mus musculus} PDB:
3kho_A*
Length = 133
Score = 26.9 bits (60), Expect = 5.0
Identities = 14/71 (19%), Positives = 25/71 (35%), Gaps = 20/71 (28%)
Query: 81 VAENRAGTCEITPYDSGPYLIAWFKDGRQIPGRT---------------SST--SLVINP 123
A+ R+ + Y + + WF R+ + + + +L I
Sbjct: 27 AAKKRSSMVKFHCYTNHSGALTWF---RKRGSQQPQELVSEEGRIVQTQNGSVYTLTIQN 83
Query: 124 VGREDRGIYQC 134
+ ED GIY C
Sbjct: 84 IQYEDNGIYFC 94
>2dmb_A Filamin-B; beta-sandwich, immunoglobulin-like fold, filamin domain,
structural genomics, NPPSFA; NMR {Homo sapiens} SCOP:
b.1.18.10
Length = 124
Score = 26.7 bits (59), Expect = 5.1
Identities = 29/93 (31%), Positives = 37/93 (39%), Gaps = 14/93 (15%)
Query: 23 KCIASGNPTPDIGWTLDGFELPTNNRFVIGQFVSGHGDVISHVNISHVTVEDGGEYAC-V 81
KC+A+G P I T+ E FV+ +G G V + DG E V
Sbjct: 13 KCLATG---PGIASTVKTGE---EVGFVVDAKTAGKGKV--TCTVLT---PDGTEAEADV 61
Query: 82 AENRAGTCEI--TPYDSGPYLIAWFKDGRQIPG 112
EN GT +I T G Y+I G IP
Sbjct: 62 IENEDGTYDIFYTAAKPGTYVIYVRFGGVDIPN 94
>3gkz_A Anti-methamphetamine single chain FV; therapeutic antibody, MDMA,
IGG, immune system; HET: B40; 1.90A {Mus musculus} PDB:
3gm0_A* 1rvf_L 3ab0_C 2a0l_C 3iy5_A
Length = 257
Score = 27.2 bits (61), Expect = 5.1
Identities = 14/59 (23%), Positives = 19/59 (32%), Gaps = 8/59 (13%)
Query: 93 PYDSGPYLIAWFKDGRQ--IPGR-TSSTS-----LVINPVGREDRGIYQCIARRSDGDV 143
S P L + +P R + S S L I+ + ED Y C S
Sbjct: 180 KPGSSPKLWIYSTSNLASGVPARFSGSGSGTSYSLTISSMEAEDAASYFCHQWSSFPFT 238
>2w0p_A Filamin-A; alternative splicing, cytoskeleton/complex,
phosphoprotein, disease mutation, immunoglobulin like,
zinc, complex; 1.90A {Homo sapiens} SCOP: b.1.18.10 PDB:
2brq_A* 2jf1_A 3isw_A
Length = 94
Score = 26.2 bits (58), Expect = 5.2
Identities = 6/34 (17%), Positives = 14/34 (41%), Gaps = 2/34 (5%)
Query: 81 VAENRAGTCEI--TPYDSGPYLIAWFKDGRQIPG 112
+ + G+C + + G Y ++ + IP
Sbjct: 50 FEDRKDGSCGVAYVVQEPGDYEVSVKFNEEHIPD 83
>1qfo_A Protein (sialoadhesin); immunoglobulin superfamily, carbohydrate
binding, immune system; HET: SIA GAL GLC; 1.85A {Mus
musculus} SCOP: b.1.1.1 PDB: 1od7_A* 1oda_A* 1od9_A*
1qfp_A 2bve_A* 1url_A*
Length = 119
Score = 26.7 bits (59), Expect = 5.3
Identities = 13/62 (20%), Positives = 26/62 (41%), Gaps = 3/62 (4%)
Query: 84 NRAGTCEITPYDSGPYLIAWFKDGR-QIPGRTSST--SLVINPVGREDRGIYQCIARRSD 140
+ +G ++ + P L+ GR ++ G +L++ + ED G Y SD
Sbjct: 43 DYSGKRQVVIHSGDPKLVDKRFRGRAELMGNMDHKVCNLLLKDLKPEDSGTYNFRFEISD 102
Query: 141 GD 142
+
Sbjct: 103 SN 104
>2d7o_A Filamin-C; beta-sandwich, immunoglobulin-like fold, filamin domain,
structural genomics, NPPSFA; NMR {Homo sapiens} SCOP:
b.1.18.10
Length = 111
Score = 26.3 bits (58), Expect = 5.3
Identities = 14/47 (29%), Positives = 19/47 (40%), Gaps = 3/47 (6%)
Query: 69 HVTVED-GGEYACVAENRAGTCEI--TPYDSGPYLIAWFKDGRQIPG 112
+ VE +N+ GTC + P G Y I D + IPG
Sbjct: 45 SLAVEGPSKAEITCKDNKDGTCTVSYLPTAPGDYSIIVRFDDKHIPG 91
>2or8_A Hepatitis A virus cellular receptor 1 homolog; beta barrel,
immunoglobulin fold, IGV domain, TIM, immune system;
2.50A {Mus musculus}
Length = 116
Score = 26.4 bits (58), Expect = 5.3
Identities = 12/73 (16%), Positives = 20/73 (27%), Gaps = 20/73 (27%)
Query: 215 CGVTHGDPPLTIRWLKDGKPLS-------------------PRFPVNVSDLDSFSSLLSI 255
C + T W + P S R+ + + L+I
Sbjct: 19 CTYSTYRGITTTCWGRGQCPSSACQNTLIWTNGHRVTYQKSSRYNLK-GHISEGDVSLTI 77
Query: 256 NSVSAAHSGEYTC 268
+ + SG Y C
Sbjct: 78 ENSVESDSGLYCC 90
Score = 26.0 bits (57), Expect = 7.2
Identities = 9/29 (31%), Positives = 11/29 (37%), Gaps = 2/29 (6%)
Query: 57 GHGDVISHVNISHVTVEDGGEYACVAENR 85
GDV + I + D G Y C E
Sbjct: 69 SEGDV--SLTIENSVESDSGLYCCRVEIP 95
>1hkf_A NKP44, NK cell activating receptor; natural cytotoxicity receptor,
immunoglobulin domain; 2.2A {Homo sapiens} SCOP: b.1.1.1
Length = 122
Score = 26.5 bits (58), Expect = 5.5
Identities = 14/69 (20%), Positives = 20/69 (28%), Gaps = 5/69 (7%)
Query: 87 GTCEITPYDSGPYLIAWFKDGR-QIPG--RTSSTSLVINPVGREDRGIYQCIARRSDGDV 143
C S P +A R I ++ + + ED G Y C R +
Sbjct: 53 LVCIRLVTSSKPRTMA--WTSRFTIWDDPDAGFFTVTMTDLREEDSGHYWCRIYRPSDNS 110
Query: 144 AQGSAELQL 152
S L
Sbjct: 111 VSKSVRFYL 119
>2a7y_A Hypothetical protein RV2302/MT2359; anti-parallel beta sheet,
structural genomics, PSI, protein structure initiative;
NMR {Mycobacterium tuberculosis} SCOP: b.34.6.3
Length = 83
Score = 26.0 bits (57), Expect = 5.5
Identities = 9/28 (32%), Positives = 12/28 (42%), Gaps = 2/28 (7%)
Query: 207 EGARTRVICGVTH--GDPPLTIRWLKDG 232
+ I V G PP +RWL +G
Sbjct: 21 RHDQHAEIIEVRSADGSPPYVVRWLVNG 48
>2or7_A T-cell immunoglobulin and mucin domain- containing protein 2;
beta barrel, immunoglobulin fold, IGV domain, TIM,
immune system; 1.50A {Mus musculus}
Length = 115
Score = 26.5 bits (58), Expect = 5.8
Identities = 17/63 (26%), Positives = 28/63 (44%), Gaps = 6/63 (9%)
Query: 25 IASGNPTPDIGWTLDGFEL--PTNNRFVIGQFVSGHGDVISHVNISHVTVEDGGEYACVA 82
+ WT +G+ + N+R+ + +S G+V + I + V DGG Y CV
Sbjct: 38 CRHSYCIRSLIWT-NGYTVTHQRNSRYQLKGNIS-EGNVS--LTIENTVVGDGGPYCCVV 93
Query: 83 ENR 85
E
Sbjct: 94 EIP 96
Score = 26.5 bits (58), Expect = 5.8
Identities = 12/74 (16%), Positives = 19/74 (25%), Gaps = 27/74 (36%)
Query: 88 TCEITPYDSGPYLIAWFK---------------DGRQIPGRTSST------------SLV 120
C + + G + W +G + + +S SL
Sbjct: 18 PCIYSTHLGGIVPMCWGLGECRHSYCIRSLIWTNGYTVTHQRNSRYQLKGNISEGNVSLT 77
Query: 121 INPVGREDRGIYQC 134
I D G Y C
Sbjct: 78 IENTVVGDGGPYCC 91
>1eaj_A Coxsackie virus and adenovirus receptor; virus/viral protein
receptor, immunoglobulin V domain fold, symmetric dimer;
1.35A {Homo sapiens} SCOP: b.1.1.1 PDB: 1f5w_A 2j12_B
2j1k_A 2wbw_B* 2w9l_A* 1rsf_A 1jew_R 1kac_B 1p69_B
1p6a_B
Length = 126
Score = 26.4 bits (58), Expect = 5.9
Identities = 8/35 (22%), Positives = 17/35 (48%), Gaps = 3/35 (8%)
Query: 118 SLVINPVGREDRGIYQCIARRSDGDVAQGSAELQL 152
S+ + + D G YQC +++ G + ++ L
Sbjct: 90 SINVTNLQLSDIGTYQCKVKKAPGV---ANKKIHL 121
Score = 26.0 bits (57), Expect = 7.9
Identities = 6/33 (18%), Positives = 12/33 (36%)
Query: 253 LSINSVSAAHSGEYTCVASNTAAQARYSSKLQV 285
+++ ++ + G Y C A L V
Sbjct: 91 INVTNLQLSDIGTYQCKVKKAPGVANKKIHLVV 123
>2yz1_A Tyrosine-protein phosphatase non-receptor type substrate 1;
beta-sandwich, structural genomics, NPPSFA; 1.40A {Mus
musculus}
Length = 120
Score = 26.4 bits (59), Expect = 6.3
Identities = 24/97 (24%), Positives = 36/97 (37%), Gaps = 18/97 (18%)
Query: 16 PGPAVSLKCIASGN-PTPDIGWTLDGFELPTNNRFVIGQFVSGHGDVISHVN-------- 66
G + L C + P I W + +R +I F H +++V+
Sbjct: 21 AGDSTVLNCTLTSLLPVGPIKW----YRGVGQSRLLIYSFTGEHFPRVTNVSDATKRNNM 76
Query: 67 -----ISHVTVEDGGEYACVAENRAGTCEITPYDSGP 98
IS+VT ED G Y CV + + T SG
Sbjct: 77 DFSIRISNVTPEDAGTYYCVKFQKGPSEPDTEIQSGG 113
>2eys_A NKT15; natural killer T cell receptor, immune system; 2.21A {Homo
sapiens} PDB: 2eyr_A 2eyt_A 3huj_E* 3tyf_A 3tzv_A*
3sdx_E* 2po6_C* 2cde_A 3to4_C*
Length = 210
Score = 26.9 bits (59), Expect = 6.4
Identities = 13/49 (26%), Positives = 20/49 (40%), Gaps = 1/49 (2%)
Query: 224 LTIRWLKDGKPLSPRFPVNVSDLDSFSSLLSINSVSAAHSGEYTCVASN 272
LTI + + R+ + SSL I + + S Y CV S+
Sbjct: 49 LTIMTFSENTKSNGRYTATLDADTKQSSL-HITASQLSDSASYICVVSD 96
>3bia_X T-cell immunoglobulin and mucin domain- containing protein 4; beta
barrel, immunoglobulin fold, IGV domain, TIM,
glycoprotein; HET: TLA; 2.20A {Mus musculus} PDB:
3bi9_X* 3bib_X*
Length = 116
Score = 26.1 bits (57), Expect = 6.4
Identities = 18/92 (19%), Positives = 26/92 (28%), Gaps = 28/92 (30%)
Query: 88 TCEITPYDSGPYLIAWFK---------------DGRQIPGRTSS------------TSLV 120
C + + W K DG +I R S+ SL
Sbjct: 17 PCHYLSWSQSRNSMCWGKGSCPNSKCNAELLRTDGTRIISRKSTKYTLLGKVQFGEVSLT 76
Query: 121 INPVGREDRGIYQCIARRSDGDVAQGSAELQL 152
I+ R D G+Y C G ++L
Sbjct: 77 ISNTNRGDSGVYCCRIEVP-GWFNDVKKNVRL 107
Score = 26.1 bits (57), Expect = 7.6
Identities = 9/28 (32%), Positives = 12/28 (42%), Gaps = 2/28 (7%)
Query: 58 HGDVISHVNISHVTVEDGGEYACVAENR 85
G+V + IS+ D G Y C E
Sbjct: 70 FGEVS--LTISNTNRGDSGVYCCRIEVP 95
>3tv3_L PGT128 light chain, IG lambda-2 chain C regions; FAB, HIV-1
neutralizing antibody, GP120, immune system; HET: PCA
MAN GOL EPE; 1.29A {Homo sapiens} PDB: 3tyg_L* 3twc_L*
2mcg_1 1mcw_M 1a8j_L 3mcg_1 1dcl_A 1mcb_A* 1mcc_A*
1mcd_A* 1mce_A* 1mcf_A* 1mch_A 1mci_A* 1mcj_A* 1mck_A
1mcl_A* 1mcn_A* 1mcq_A 1mcr_A ...
Length = 211
Score = 27.0 bits (60), Expect = 6.5
Identities = 17/90 (18%), Positives = 31/90 (34%), Gaps = 7/90 (7%)
Query: 189 EKVPPKIESFAFPFDGLPEGARTRVICGVTHGDP-PLTIRWLKDGKPLSPRFPVNVSDLD 247
K P + F + L T ++C ++ P +T+ W D P+
Sbjct: 108 PKAAPSVTLFPPSSEELQANKAT-LVCLISDFYPGAVTVAWKADSSPVKAGVETTTPSKQ 166
Query: 248 -----SFSSLLSINSVSAAHSGEYTCVASN 272
+ SS LS+ Y+C ++
Sbjct: 167 SNNKYAASSYLSLTPEQWKSHRSYSCQVTH 196
>2frg_P TREM-like transcript-1; immunoglobulin-like, beta-sandwich, cell
surface receptor, triggering receptor, platelet
receptor, ITIM, immune system; 1.19A {Homo sapiens}
Length = 106
Score = 26.0 bits (57), Expect = 6.9
Identities = 10/44 (22%), Positives = 15/44 (34%), Gaps = 3/44 (6%)
Query: 45 TNNRFVIGQFVSGHGDVISHVNISHVTVEDGGEYACVAENRAGT 88
R G + V + + ED GEY C+ + G
Sbjct: 53 PAGRRTFLTD---LGGGLLQVEMVTLQEEDAGEYGCMVDGARGP 93
>2j3s_A Filamin-A; cytoskeleton, phosphorylation, structural protein; 2.5A
{Homo sapiens} SCOP: b.1.18.10 b.1.18.10 PDB: 2e9i_A
Length = 288
Score = 27.2 bits (59), Expect = 6.9
Identities = 10/47 (21%), Positives = 20/47 (42%), Gaps = 3/47 (6%)
Query: 70 VTVEDGGEYAC-VAENRAGTCEI--TPYDSGPYLIAWFKDGRQIPGR 113
+++E + + GTC + P + G Y+I + +PG
Sbjct: 41 LSIEGPSKVDINTEDLEDGTCRVTYCPTEPGNYIINIKFADQHVPGS 87
>3moq_A NEW antigen receptor variable domain, P3(40) PEPT amyloid beta A4
protein; AB-ignar, AB-12Y-2, glycoprotein, membran
protease inhibitor; 2.05A {Orectolobus maculatus} PDB:
2z8w_C 2z8v_C 1ves_A 1ver_A
Length = 126
Score = 26.3 bits (58), Expect = 7.0
Identities = 16/76 (21%), Positives = 22/76 (28%), Gaps = 16/76 (21%)
Query: 88 TCEITPYDSGPYLIAWF-------------KDGRQIPGRTS---STSLVINPVGREDRGI 131
C + W+ GR + S SL I+ + ED G
Sbjct: 21 NCVLRDASFELKDTGWYRTKLGSTNEQSISIGGRYVETVNKGSKSFSLRISDLRVEDSGT 80
Query: 132 YQCIARRSDGDVAQGS 147
Y+C A GS
Sbjct: 81 YKCQAFYVFFAEDVGS 96
>2bc4_A HLA class II histocompatibility antigen, DM alpha chain; MHC class
II, immune system; HET: NDG BMA; 2.27A {Homo sapiens}
PDB: 1hdm_A 1k8i_A*
Length = 211
Score = 27.0 bits (59), Expect = 7.0
Identities = 13/55 (23%), Positives = 21/55 (38%), Gaps = 3/55 (5%)
Query: 181 YPIEEVHWEKVPPKIESFAFPFDGLPEGARTRVICGVTHGDPP-LTIRWLKDGKP 234
++ + P E F L G ++C V++ PP LT+ W P
Sbjct: 89 KLDGKIPVSRGFPIAE--VFTLKPLEFGKPNTLVCFVSNLFPPMLTVNWQHHSVP 141
>1xt5_A Variable region-containing chitin-binding protein 3; innate
immunity, VCBP, primordial antigen receptor, florida
lancelet, amphioxus; 1.15A {Branchiostoma floridae}
Length = 135
Score = 26.4 bits (57), Expect = 7.5
Identities = 8/28 (28%), Positives = 13/28 (46%)
Query: 107 GRQIPGRTSSTSLVINPVGREDRGIYQC 134
GR ++ +L + V +D G Y C
Sbjct: 82 GRASVANLAAPTLRLTHVHPQDGGRYWC 109
>2d7p_A Filamin-C; beta-sandwich, immunoglobulin-like fold, filamin domain,
structural genomics, NPPSFA; NMR {Homo sapiens} SCOP:
b.1.18.10 PDB: 2eeb_A
Length = 112
Score = 25.9 bits (57), Expect = 7.6
Identities = 13/47 (27%), Positives = 20/47 (42%), Gaps = 3/47 (6%)
Query: 69 HVTVEDGGEYAC-VAENRAGTCEI--TPYDSGPYLIAWFKDGRQIPG 112
V G C V+E + I P+++G + I +G IPG
Sbjct: 46 RVHTPSGAVEECYVSELDSDKHTIRFIPHENGVHSIDVKFNGAHIPG 92
>3c5j_A HLA class II histocompatibility antigen, DR alpha; HLA, MHC class
II, glycoprotein, immune response, membrane,
transmembrane, GTP-binding, methylation; HET: NAG; 1.80A
{Homo sapiens} PDB: 1d5x_A* 1d5z_A* 1d6e_A* 1d5m_A
1fyt_A* 1hqr_A 1j8h_A* 1r5i_A 1seb_A 1zgl_A 2seb_A*
1fv1_A* 2ipk_A* 3pdo_A 3pgc_A 3pgd_A 1ymm_A* 1aqd_A
2g9h_A* 1h15_A ...
Length = 181
Score = 26.6 bits (59), Expect = 8.0
Identities = 9/28 (32%), Positives = 17/28 (60%), Gaps = 1/28 (3%)
Query: 211 TRVICGVTHGDPP-LTIRWLKDGKPLSP 237
+IC + PP + + WL++GKP++
Sbjct: 103 NVLICFIDKFTPPVVNVTWLRNGKPVTT 130
>2nw2_A ELS4 TCR alpha chain; T cell receptor, immune system; 1.40A {Homo
sapiens} PDB: 2nx5_D 4dzb_A
Length = 200
Score = 26.4 bits (58), Expect = 8.2
Identities = 11/51 (21%), Positives = 15/51 (29%), Gaps = 1/51 (1%)
Query: 222 PPLTIRWLKDGKPLSPRFPVNVSDLDSFSSLLSINSVSAAHSGEYTCVASN 272
P + DG RF +S S L + + S Y C
Sbjct: 42 PTFLSYNVLDGLEEKGRFSSFLSR-SKGYSYLLLKELQMKDSASYLCAVQA 91
>2ee6_A Filamin-B; beta-sandwich, immunoglobulin-like fold, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens}
Length = 105
Score = 25.9 bits (57), Expect = 8.3
Identities = 17/100 (17%), Positives = 30/100 (30%), Gaps = 17/100 (17%)
Query: 16 PGPAVSLKCIASGNPTPDIGWTLDGFELPTNNRFVIGQFVSGHGDVISHVNISHVTVED- 74
G + K A G P + G F I +S + VE
Sbjct: 6 SGEGGAHKVRAGG---PGLERGEAGVP----AEFSI-WTREAGAGGLS------IAVEGP 51
Query: 75 GGEYACVAENRAGTCEI--TPYDSGPYLIAWFKDGRQIPG 112
+++ G+C + + G Y ++ + IP
Sbjct: 52 SKAEITFDDHKNGSCGVSYIAQEPGNYEVSIKFNDEHIPE 91
>1v05_A Filamin C; actin-binding protein, immunoglobulin; 1.43A {Homo
sapiens} SCOP: b.1.18.10 PDB: 2eed_A
Length = 96
Score = 25.5 bits (56), Expect = 8.4
Identities = 14/92 (15%), Positives = 27/92 (29%), Gaps = 13/92 (14%)
Query: 23 KCIASGNPTPDIGWTLDGFELPTNNRFVIGQFVSGHGDVISHVNISHVTVEDGGEYACVA 82
K + G L + N F + +G ++ V+ E+ V
Sbjct: 8 KVVTRGP-------GLSQAFVGQKNSFTVDCSKAGTNMMMVGVHGPKTPCEEVY----VK 56
Query: 83 ENRAGTCEI--TPYDSGPYLIAWFKDGRQIPG 112
+ T + G Y++ +PG
Sbjct: 57 HMGNRVYNVTYTVKEKGDYILIVKWGDESVPG 88
>1qgc_4 Protein (immunoglobulin); virus-antibody complex, icosahedral
virus, virus-immune SYST complex; 30.00A {Mus musculus}
SCOP: i.6.1.1
Length = 438
Score = 26.8 bits (60), Expect = 9.0
Identities = 12/52 (23%), Positives = 19/52 (36%), Gaps = 6/52 (11%)
Query: 223 PLTIRWLKDGKPLSPRFPVNVSDLDSFSSLLSINSV-----SAAHSGE-YTC 268
+ ++W DG + +D DS S S++S YTC
Sbjct: 147 DINVKWKIDGSERQNGVLNSWTDQDSKDSTYSMSSTLTLTKDEYERHNSYTC 198
>2di8_A Filamin-B; beta-sandwich, immunoglobulin-like fold, filamin domain,
structural genomics, NPPSFA; NMR {Homo sapiens} SCOP:
b.1.18.10
Length = 111
Score = 25.9 bits (57), Expect = 9.1
Identities = 13/53 (24%), Positives = 23/53 (43%), Gaps = 4/53 (7%)
Query: 81 VAENRAGTCEI--TPYDSGPYLIAWFKDGRQIPGRTSSTSLVINPVGREDRGI 131
+ GTC++ P G Y+++ +PG S ++ I+ GR G
Sbjct: 58 TEDLEDGTCKVSYFPTVPGVYIVSTKFADEHVPG--SPFTVKISGEGRVKSGP 108
>3kg5_A B-cell antigen receptor complex-associated protei chain; CD79B,
IG-beta, BCR, immunoglobulin domain, protein binding;
3.20A {Homo sapiens}
Length = 134
Score = 26.2 bits (58), Expect = 9.1
Identities = 16/80 (20%), Positives = 28/80 (35%), Gaps = 20/80 (25%)
Query: 81 VAENRAGTCEITPY-DSGPYLIAWFKDGRQIPGRT-----------------SSTSLVIN 122
+A R T ++ Y +S ++W +Q S +L I
Sbjct: 28 IARKRGFTVKMHCYMNSASGNVSWLW--KQEMDENPQQLKLEKGRMEESQNESLATLTIQ 85
Query: 123 PVGREDRGIYQCIARRSDGD 142
+ ED GIY C + ++
Sbjct: 86 GIRFEDNGIYFCQQKCNNTS 105
>2wkk_A Galectin-2; sugar-binding protein, secreted, cell WALL, sugar
binding, sugar binding protein, beta-galactoside
binding lectin, fruiting BODY; HET: GAL NAG FUC; 1.50A
{Coprinopsis cinerea} PDB: 1ulc_A* 1ul9_A* 1ule_A*
1ulf_A* 1ulg_A* 1uld_A*
Length = 150
Score = 26.0 bits (57), Expect = 9.3
Identities = 5/66 (7%), Positives = 18/66 (27%), Gaps = 16/66 (24%)
Query: 2 PPILTYSFIEQTLQPGPAVSLKCIASGNPTPDIGWTLDGFELPTNNRFVIGQFVSGHGDV 61
+ ++ +P + + + F+S ++
Sbjct: 5 LFVNNQVKLQNDFKPESVA----------------AIRSSAFNSKGGTTVFNFLSAGENI 48
Query: 62 ISHVNI 67
+ H++I
Sbjct: 49 LLHISI 54
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna;
HET: CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 26.1 bits (56), Expect = 9.3
Identities = 5/23 (21%), Positives = 13/23 (56%), Gaps = 7/23 (30%)
Query: 10 IEQTLQ---PG--PAVSLKCIAS 27
++ +L+ PA+++K A+
Sbjct: 25 LQASLKLYADDSAPALAIK--AT 45
>1zox_A CLM-1; IG-superfamily, IG-V, NKP44-like, myeloid IG-like
receptor, structural genomics, PSI, protein structure
initiative; 2.10A {Mus musculus}
Length = 113
Score = 25.8 bits (57), Expect = 9.4
Identities = 16/86 (18%), Positives = 25/86 (29%), Gaps = 18/86 (20%)
Query: 15 QPGPAVSLKCI-ASGNPTPDIGW--------------TLDGFELPTNNRFVIGQFVSGHG 59
Q +++++C SG W T +L NR I
Sbjct: 14 QEQGSLTVQCRYTSGWKDYKKYWCQGVPQRSCKTLVETDASEQLVKKNRVSIRDNQRDF- 72
Query: 60 DVISHVNISHVTVEDGGEYACVAENR 85
I V + + + D G Y C
Sbjct: 73 --IFTVTMEDLRMSDAGIYWCGITKG 96
>1qok_A MFE-23 recombinant antibody fragment; immunoglobulin, single-chain
FV, anti-carcinoembryonic antigen; 2.4A {Mus musculus}
SCOP: b.1.1.1 b.1.1.1
Length = 282
Score = 26.6 bits (59), Expect = 10.0
Identities = 15/56 (26%), Positives = 20/56 (35%), Gaps = 8/56 (14%)
Query: 96 SGPYLIAWFKDGRQ--IPGR----TSST--SLVINPVGREDRGIYQCIARRSDGDV 143
+ P L + +P R S T SL I+ + ED Y C R S
Sbjct: 202 TSPKLWIYSTSNLASGVPARFSGSGSGTSYSLTISRMEAEDAATYYCQQRSSYPLT 257
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.317 0.137 0.424
Gapped
Lambda K H
0.267 0.0526 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 4,547,760
Number of extensions: 286311
Number of successful extensions: 3153
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2065
Number of HSP's successfully gapped: 1168
Length of query: 286
Length of database: 6,701,793
Length adjustment: 93
Effective length of query: 193
Effective length of database: 4,105,140
Effective search space: 792292020
Effective search space used: 792292020
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 57 (26.2 bits)