RPS-BLAST 2.2.26 [Sep-21-2011]

Database: CDD.v3.10 
           44,354 sequences; 10,937,602 total letters

Searching..................................................done

Query= psy15668
         (365 letters)



>gnl|CDD|131928 TIGR02882, QoxB, cytochrome aa3 quinol oxidase, subunit I.  This
           family (QoxB) encodes subunit I of the aa3-type quinone
           oxidase, one of several bacterial terminal oxidases.
           This complex couples oxidation of reduced quinones with
           the reduction of molecular oxygen to water and the
           pumping of protons to form a proton gradient utilized
           for ATP production. aa3-type oxidases contain two heme a
           cofactors as well as copper atoms in the active site
           [Energy metabolism, Electron transport].
          Length = 643

 Score = 33.3 bits (76), Expect = 0.22
 Identities = 17/69 (24%), Positives = 28/69 (40%), Gaps = 14/69 (20%)

Query: 253 PRDMTGDP-------FVRCRPFDKY---VAPLINDYLKIYWRYQNNKTIFYVS---LVSL 299
           PR+ TGDP       +    P  KY   V P +NDY   +W  + +    Y+       +
Sbjct: 518 PREATGDPWNGRTLEWATASPPPKYNFAVTPDVNDY-DAFWDMKKHGYRHYLDNENYKDI 576

Query: 300 NYPYVTPLP 308
           + P  + + 
Sbjct: 577 HMPNNSGVG 585


>gnl|CDD|201524 pfam00954, S_locus_glycop, S-locus glycoprotein family.  In
           Brassicaceae, self-incompatible plants have a
           self/non-self recognition system. This is
           sporophytically controlled by multiple alleles at a
           single locus (S). S-locus glycoproteins, as well as
           S-receptor kinases, are in linkage with the S-alleles.
          Length = 110

 Score = 28.0 bits (63), Expect = 3.5
 Identities = 11/39 (28%), Positives = 14/39 (35%), Gaps = 7/39 (17%)

Query: 307 LPDDLCEP-NPCGENAKCQPGYDKSGKDRPVCTCLPGYV 344
            P D C+    CG    C           P C C+ G+V
Sbjct: 75  APKDQCDVYGRCGPYGYCDV------NTSPKCNCIKGFV 107



 Score = 27.6 bits (62), Expect = 4.7
 Identities = 8/21 (38%), Positives = 12/21 (57%), Gaps = 1/21 (4%)

Query: 15  CGSNTQCNVASNRPVCSCLPG 35
           CG    C+V +  P C+C+ G
Sbjct: 86  CGPYGYCDV-NTSPKCNCIKG 105


>gnl|CDD|215400 PLN02751, PLN02751, glutamyl-tRNA(Gln) amidotransferase.
          Length = 544

 Score = 28.6 bits (64), Expect = 5.4
 Identities = 16/65 (24%), Positives = 25/65 (38%), Gaps = 21/65 (32%)

Query: 188 RAVCSCPVGYLGDPYTSCRAECLAHSDCPTDRPSCLG--------NKCMNPCAGQCGINA 239
           +A CSCP  Y  +P T+          CP     C+G        N  +   A + G+  
Sbjct: 78  KAFCSCPYNYGAEPNTTV---------CPV----CMGLPGTLPVLNSKVVEKAVKLGLAL 124

Query: 240 KCEVR 244
            C++ 
Sbjct: 125 NCKIS 129


>gnl|CDD|216066 pfam00695, vMSA, Major surface antigen from hepadnavirus. 
          Length = 364

 Score = 28.8 bits (64), Expect = 5.4
 Identities = 17/38 (44%), Positives = 19/38 (50%), Gaps = 4/38 (10%)

Query: 69  VCAGQCGVNSECNVRNHIPVCSCPPGYTGDPLTQCRRF 106
           VCAGQ   N++     H P  SCPPG  G      RRF
Sbjct: 192 VCAGQ---NTQAQTSPHYPT-SCPPGCPGFRWMYLRRF 225


  Database: CDD.v3.10
    Posted date:  Mar 20, 2013  7:55 AM
  Number of letters in database: 10,937,602
  Number of sequences in database:  44,354
  
Lambda     K      H
   0.322    0.139    0.502 

Gapped
Lambda     K      H
   0.267   0.0603    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 17,117,642
Number of extensions: 1479456
Number of successful extensions: 1167
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1131
Number of HSP's successfully gapped: 92
Length of query: 365
Length of database: 10,937,602
Length adjustment: 98
Effective length of query: 267
Effective length of database: 6,590,910
Effective search space: 1759772970
Effective search space used: 1759772970
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 60 (27.2 bits)