RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy15668
(365 letters)
>3k6s_B Integrin beta-2; cell receptor, adhesion molecule, cell adhesion,
pyrrolidone carboxylic acid; HET: NAG MAN; 3.50A {Homo
sapiens} PDB: 3k71_B* 3k72_B*
Length = 687
Score = 45.5 bits (107), Expect = 2e-05
Identities = 38/209 (18%), Positives = 50/209 (23%), Gaps = 31/209 (14%)
Query: 8 DPCSPNPCGSNTQCNVASNRPVCSCLPGHWGNPLTYCQRGECQDHSDCSHSKACKEYRC- 66
+ C +N +CS L C G+C H+ K C
Sbjct: 462 QTQGRSSQELEGSCRKDNNSIICSGLGD--------CVCGQCLCHTSDVPGKLIYGQYCE 513
Query: 67 VDVCAGQCGVNSECNVRNHIP----VCSCPPGYTGDPLTQCRRFDPQELCDRSPCGVNTR 122
D + C C C PG+ G R + R C R
Sbjct: 514 CDTINCERYNGQVCGGPGRGLCFCGKCRCHPGFEGSACQCERTTEGCLNPRRVECSGRGR 573
Query: 123 CEVINMVPTCSCLPGYTG---SPLSGCRHECDSDYDCGPSQSCV--------NYKCANPC 171
C C C GY GC C C + C
Sbjct: 574 CR----CNVCECHSGYQLPLCQECPGCPSPCGKYISCAECLKFEKGPFGKNCSAACPGLQ 629
Query: 172 ASGACAPTAQCEVRNHRAVCSCPVGYLGD 200
S C+ R+ C V Y +
Sbjct: 630 LSNNPVKGRTCKERD---SEGCWVAYTLE 655
Score = 34.7 bits (79), Expect = 0.055
Identities = 38/254 (14%), Positives = 55/254 (21%), Gaps = 47/254 (18%)
Query: 10 CSPNPCGSNTQCNVASNRPVCSCLPGHWGNPLTYCQRGECQDHSDCSHSKACKEYRCVDV 69
C V C L + Q C + +
Sbjct: 378 CDGVQINVPITFQVKVTATECIQEQSFVIRALGFTDIVTVQVLPQCECRCRDQSR-DRSL 436
Query: 70 CAGQCGVNSECNVRNHIPVCSCPPGYTGDPLTQCRRFDPQELCDRSPCGVNTRCEVINMV 129
C G+ + +C C GY G RS + C N
Sbjct: 437 CHGKGFLEC--------GICRCDTGYIGKNCECQ-------TQGRSSQELEGSCRKDNNS 481
Query: 130 PTCSCLPGYTGSPLSGCRHECDSDYDCGPSQSCVNYKCANPCASGACAPTAQCEVRNHRA 189
CS G + G +C P + C + C
Sbjct: 482 IICSG----LGDCVCG---QCLCHTSDVPGKLIYGQYCECDTINCERYNGQVCGGPGRGL 534
Query: 190 ----VCSCPVGYLGDPYTSCRAECLAHSDCPTDRPSCLGNKCMNPCAGQCGINAKCEVRG 245
C C G+ G +C C C+NP +C +C
Sbjct: 535 CFCGKCRCHPGFEGS---AC--------QCERTTEG-----CLNPRRVECSGRGRCR--- 575
Query: 246 ATPICSCPRDMTGD 259
+C C
Sbjct: 576 -CNVCECHSGYQLP 588
Score = 32.8 bits (74), Expect = 0.22
Identities = 19/149 (12%), Positives = 32/149 (21%), Gaps = 4/149 (2%)
Query: 108 PQELCDRSPCGVNTRCEVINMVPTCSCLPGYTGSPLSGCRHECDSDYDCGPSQSCVNYKC 167
+L R N + + + C G T + Q V
Sbjct: 338 YNKLSSRVFLDHNALPDTLKVTYDSFCSNGVTHRNQPRGDCDGVQINVPITFQVKVTATE 397
Query: 168 ANPCASGACAPTAQCEVR--NHRAVCSCPVGYLGDPYTSCRAECLAHSDCPTDRPSCLGN 225
S ++ C C + C + +G
Sbjct: 398 CIQEQSFVIRALGFTDIVTVQVLPQCECRCRDQSRDRSLCHGKGFLECGICRCDTGYIGK 457
Query: 226 KCMNPCAGQCG--INAKCEVRGATPICSC 252
C G+ + C + ICS
Sbjct: 458 NCECQTQGRSSQELEGSCRKDNNSIICSG 486
Score = 29.7 bits (66), Expect = 1.6
Identities = 22/166 (13%), Positives = 35/166 (21%), Gaps = 9/166 (5%)
Query: 73 QCGVNSECNVRNHIPVCSCPPGYTGDPLTQCRRFDPQELCDRSPCGVNTRCEVINMVPTC 132
N+ + C G T + Q + T E I
Sbjct: 346 FLDHNALPDTLKVTYDSFCSNGVTHRNQPRGDCDGVQINVPITFQVKVTATECIQEQSFV 405
Query: 133 SCLPGYTGSPLSGCRH--ECDSDYDCGPSQSCVNYKCANPCASGACAPTAQCEVRNHRAV 190
G+T EC C G C +C+
Sbjct: 406 IRALGFTDIVTVQVLPQCECRCRDQSRDRSLCHGKGF---LECGIC----RCDTGYIGKN 458
Query: 191 CSCPVGYLGDPYTSCRAECLAHSDCPTDRPSCLGNKCMNPCAGQCG 236
C C +S + C+ +C+ + G
Sbjct: 459 CECQTQGRSSQELEGSCRKDNNSIICSGLGDCVCGQCLCHTSDVPG 504
>1uzk_A Fibrillin-1; glycoprotein, extra-cellular matrix, calcium, TB
domain, disease mutation, extracellular matrix,
polymorphism, cbegf domain; 1.35A {Homo sapiens} SCOP:
g.3.11.1 g.3.11.1 g.23.1.1 PDB: 1uzj_A 1uzp_A 1uzq_A
Length = 162
Score = 39.7 bits (93), Expect = 4e-04
Identities = 26/158 (16%), Positives = 39/158 (24%), Gaps = 27/158 (17%)
Query: 10 CSPNPCGSNTQCNVASNRPVCSCLPGHWGNPLTYCQRGECQDHSDCSHSKACKEYRCVDV 69
C + C +C C P NP CVD
Sbjct: 6 CLDPTTCISGNCVNTPGSYICDCPPDFELNP---------------------TRVGCVDT 44
Query: 70 CAGQCGVNSECNVRNHIPVCSCPPGYTGDPLTQCRRFDPQELCDRSPCGVNTRCEVINMV 129
+G C ++ N CS G + C +PC +
Sbjct: 45 RSGNCYLDIRPRGDNGDTACSNEIGVGVSKASCCCSLGK---AWGTPCEMCPAVNTSEYK 101
Query: 130 PTCSCLPGYTGSPLSGCRH---ECDSDYDCGPSQSCVN 164
C G+ +P++ EC C+N
Sbjct: 102 ILCPGGEGFRPNPITVILEDIDECQELPGLCQGGKCIN 139
Score = 33.5 bits (77), Expect = 0.049
Identities = 27/141 (19%), Positives = 39/141 (27%), Gaps = 27/141 (19%)
Query: 89 CSCPPGYTGDPLTQCRRFDPQELCDRSPCGVNTRCEVINMVPTCSCLPGYTGSPLSGCRH 148
C CPP + +P T+ D C ++ R N CS G S S C
Sbjct: 26 CDCPPDFELNP-TRVGCVD----TRSGNCYLDIRPRGDNGDTACSNEIGVGVSKASCC-- 78
Query: 149 ECDSDYDCGPSQSCVNYKCANPCASGACAPTAQCEVRNHRAVCSCPVGYLGDPYTSCRAE 208
C C ++ +C G+ +P
Sbjct: 79 -CSLGK----------------AWGTPCEMCPAVNTSEYKILCPGGEGFRPNP---ITVI 118
Query: 209 CLAHSDCPTDRPSCLGNKCMN 229
+C C G KC+N
Sbjct: 119 LEDIDECQELPGLCQGGKCIN 139
>3h5c_B Vitamin K-dependent protein Z; protein Z-protein Z inhibitor
complex, blood coagulation, CL PAIR of basic residues,
disulfide bond, EGF-like domain; HET: NAG BGC; 3.26A
{Homo sapiens}
Length = 317
Score = 39.7 bits (93), Expect = 9e-04
Identities = 26/115 (22%), Positives = 32/115 (27%), Gaps = 20/115 (17%)
Query: 4 YMGGDPCSPNPCGSNTQCNVASNRPVCSCLPGHWGNPLTYCQRGECQDHSDCSHSKACKE 63
Y GG PC PC N C + C+C PG + S+C +K
Sbjct: 2 YKGGSPCISQPCLHNGSCQDSIWGYTCTCSPG--------------YEGSNCELAK---- 43
Query: 64 YRCVDVCAGQCGVNSECNVRNHIPVCSCPPGYTGDPLTQCRRFDPQELCDRSPCG 118
C C C CSC GY + Q C
Sbjct: 44 NECHPERTDGC--QHFCLPGQESYTCSCAQGYRLGEDHKQCVPHDQCACGVLTSE 96
Score = 32.8 bits (75), Expect = 0.13
Identities = 19/95 (20%), Positives = 27/95 (28%), Gaps = 1/95 (1%)
Query: 165 YKCANPCASGACAPTAQCEVRNHRAVCSCPVGYLGDPYTSCRAECLAHSDCPTDRPSCLG 224
YK +PC S C C+ C+C GY G + EC G
Sbjct: 2 YKGGSPCISQPCLHNGSCQDSIWGYTCTCSPGYEGSNCELAKNECHPERTDGCQHFCLPG 61
Query: 225 -NKCMNPCAGQCGINAKCEVRGATPICSCPRDMTG 258
CA + + C+C +
Sbjct: 62 QESYTCSCAQGYRLGEDHKQCVPHDQCACGVLTSE 96
Score = 32.4 bits (74), Expect = 0.23
Identities = 23/94 (24%), Positives = 31/94 (32%), Gaps = 6/94 (6%)
Query: 112 CDRSPCGVNTRCEVINMVPTCSCLPGYTGSPLSGCRHECDSDYDCGPSQSCVN----YKC 167
C PC N C+ TC+C PGY GS ++EC + G C+ Y C
Sbjct: 8 CISQPCLHNGSCQDSIWGYTCTCSPGYEGSNCELAKNECHPERTDGCQHFCLPGQESYTC 67
Query: 168 ANPCASGACAPTAQCEVRNHRAVCSCPVGYLGDP 201
CA G + H +
Sbjct: 68 --SCAQGYRLGEDHKQCVPHDQCACGVLTSEKRA 99
Score = 28.9 bits (65), Expect = 2.4
Identities = 13/37 (35%), Positives = 13/37 (35%), Gaps = 5/37 (13%)
Query: 310 DLCEPNPCGENAKCQPGYDKSGKDRPVCTCLPGYVGD 346
C PC N CQ CTC PGY G
Sbjct: 6 SPCISQPCLHNGSCQDSI-----WGYTCTCSPGYEGS 37
Score = 27.8 bits (62), Expect = 5.5
Identities = 24/104 (23%), Positives = 28/104 (26%), Gaps = 8/104 (7%)
Query: 68 DVCAGQ-CGVNSECNVRNHIPVCSCPPGYTGDPLTQCRRFDPQELCDRSPCGVNTRCEVI 126
C Q C N C C+C PGY G C E G C
Sbjct: 6 SPCISQPCLHNGSCQDSIWGYTCTCSPGYEGS---NCEL-AKNECHPERTDGCQHFCLPG 61
Query: 127 NMVPTCSCLPGYTGSPLSGCRHECDSDYDCGPSQSCVNYKCANP 170
TCSC GY L +C C + +
Sbjct: 62 QESYTCSCAQGY---RLGEDHKQCVPHDQCACGVLTSEKRAPDL 102
>1nfu_B Coagulation factor XA, light chain; hydrolase; HET: RRP; 2.05A
{Homo sapiens} SCOP: g.3.11.1 PDB: 2h9e_L*
Length = 195
Score = 39.0 bits (91), Expect = 0.001
Identities = 29/218 (13%), Positives = 45/218 (20%), Gaps = 58/218 (26%)
Query: 13 NPCGSNTQCNVASNRPVCSCLPGHWGNPLTYCQRGECQDHSDCSHSKACKEYRCVDVCAG 72
C T + + + +D C S + +C D
Sbjct: 10 RECMEETCSYEEAREVFEDSDKTNEFWN-------KYKDGDQCETSPCQNQGKCKDGLGE 62
Query: 73 QCGVNSECNVRNHIPVCSCPPGYTGDPLTQCRRFDPQELCDRSPCGVNTRCEVINMVPTC 132
C+C G+ G ++LC + C C
Sbjct: 63 Y--------------TCTCLEGFEGKNCEL----FTRKLCSLDNGDCDQFCHEEQNSVVC 104
Query: 133 SCLPGYTGSPLSGCRHECDSDYDCGPSQSCVNYKCANPCASGACAPTAQCEVRNHRAVCS 192
SC GYT + C P C + A +
Sbjct: 105 SCARGYTLAD---NGKACI------------------PTGPYPCGKQTLERRKRSVAQAT 143
Query: 193 CPVGYLGDPYTSCRAECLAHSDCPTDRPSCLGNKCMNP 230
G D S + + NP
Sbjct: 144 SSSGEAPD------------SITWKPYDAADLDPTENP 169
Score = 37.4 bits (87), Expect = 0.003
Identities = 30/171 (17%), Positives = 48/171 (28%), Gaps = 27/171 (15%)
Query: 4 YMGGDPCSPNPCGSNTQCNVASNRPVCSCLPGHWGNPLTYCQRGECQDHSDCSHSKACKE 63
Y GD C +PC + +C C+CL G G C E
Sbjct: 39 YKDGDQCETSPCQNQGKCKDGLGEYTCTCLEGFEG---KNC------------------E 77
Query: 64 YRCVDVCAGQ-CGVNSECNVRNHIPVCSCPPGYTGDPLTQCRRFDPQELCDRSPCGVNTR 122
+C+ + C+ + VCSC GYT + PCG T
Sbjct: 78 LFTRKLCSLDNGDCDQFCHEEQNSVVCSCARGYTLA---DNGK--ACIPTGPYPCGKQTL 132
Query: 123 CEVINMVPTCSCLPGYTGSPLSGCRHECDSDYDCGPSQSCVNYKCANPCAS 173
V + G ++ ++ +++ P
Sbjct: 133 ERRKRSVAQATSSSGEAPDSITWKPYDAADLDPTENPFDLLDFNQTQPERG 183
Score = 30.1 bits (68), Expect = 0.72
Identities = 11/76 (14%), Positives = 19/76 (25%), Gaps = 6/76 (7%)
Query: 8 DPCSPNPCGSNTQCNVASNRPVCSCLPGHWGNPLTYCQRGECQDHSDCSHSKACKEYRCV 67
P P PCG T + + G + +T + + + +
Sbjct: 120 IPTGPYPCGKQTLERRKRSVAQATSSSGEAPDSIT------WKPYDAADLDPTENPFDLL 173
Query: 68 DVCAGQCGVNSECNVR 83
D Q R
Sbjct: 174 DFNQTQPERGDNNLTR 189
Score = 27.0 bits (60), Expect = 7.7
Identities = 24/172 (13%), Positives = 37/172 (21%), Gaps = 46/172 (26%)
Query: 89 CSCPPGYTGDPLTQCRRFDPQELCDRSPCGVNTRCEVINMVPTCSCLPGYTGSPLSGCRH 148
+ + D C+ SPC +C+ TC+CL G+ G
Sbjct: 27 EDSDKTNEFW--NKYKDGDQ---CETSPCQNQGKCKDGLGEYTCTCLEGFEGK-----NC 76
Query: 149 ECDSDYDCGPSQSCVNYKCANPCASGACAPTAQCEVRNHRAVCSCPVGYLGDPYTSCRAE 208
E + C+ C + VCSC GY
Sbjct: 77 ELFTR---------------KLCSLDNGDCDQFCHEEQNSVVCSCARGYTLA-------- 113
Query: 209 CLAHSDCPTDRPSCLGNKCMNPCAGQCGINAKCEVRGATPICSCPRDMTGDP 260
D C + + + D
Sbjct: 114 -----DNGKACIPTGPYPCGK--------QTLERRKRSVAQATSSSGEAPDS 152
>3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase,
hydrolase-lipid binding P complex; 3.30A {Homo sapiens}
PDB: 3p5c_L
Length = 400
Score = 39.8 bits (92), Expect = 0.001
Identities = 26/164 (15%), Positives = 45/164 (27%), Gaps = 4/164 (2%)
Query: 8 DPCSPNPCGSNTQCNVASNRPVCSCLPGHWGNPLTYCQRG-ECQDHSDCSHSKACKEYRC 66
+ C N G + CN C C G C+ ECQD CS C
Sbjct: 1 NECLDNNGGCSHVCNDLKIGYECLCPDGFQLVAQRRCEDIDECQDPDTCSQL--CVNLEG 58
Query: 67 VDVCAGQCGVNSECNVRNHIPVCSCPPGYTGDPLTQCRRFDPQELCDRSPCGVNTRCEVI 126
C + G + + + V S + + R+ S +
Sbjct: 59 GYKCQCEEGFQLDPHTKACKAVGSIAYLFFT-NRHEVRKMTLDRSEYTSLIPNLRNVVAL 117
Query: 127 NMVPTCSCLPGYTGSPLSGCRHECDSDYDCGPSQSCVNYKCANP 170
+ + + S C + D + + ++ P
Sbjct: 118 DTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAP 161
Score = 32.9 bits (74), Expect = 0.16
Identities = 24/187 (12%), Positives = 42/187 (22%), Gaps = 3/187 (1%)
Query: 112 CDRSPCGVNTRCEVINMVPTCSCLPGYTGSPLSGCRHECDSDYDCGPSQSCVNYKCANPC 171
C + G + C + + C C G+ C + SQ CVN + C
Sbjct: 3 CLDNNGGCSHVCNDLKIGYECLCPDGFQLVAQRRCEDIDECQDPDTCSQLCVNLEGGYKC 62
Query: 172 ASGACAPTAQCEVRNHRAVCSCPVGYLGDPYTSCRAECLAHSDCPTDRPSCLGNKCMNPC 231
+ +AV S + + + +
Sbjct: 63 QCEEG-FQLDPHTKACKAVGSIAYLFFTNRHEVRKMTLDRSEYTSLIPNLRNVVALDTEV 121
Query: 232 AGQCGINAKCEVRGATPICSCPRDMTGDPFVRCRPFDKYVAPLINDYL--KIYWRYQNNK 289
A + R + L D++ IYW
Sbjct: 122 ASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHSNIYWTDSVLG 181
Query: 290 TIFYVSL 296
T+
Sbjct: 182 TVSVADT 188
Score = 32.9 bits (74), Expect = 0.16
Identities = 18/153 (11%), Positives = 35/153 (22%), Gaps = 10/153 (6%)
Query: 169 NPCASGACAPTAQCEVRNHRAVCSCPVGYLGDPYTSCRA--ECLAHSDCP--------TD 218
N C + C C CP G+ C EC C
Sbjct: 1 NECLDNNGGCSHVCNDLKIGYECLCPDGFQLVAQRRCEDIDECQDPDTCSQLCVNLEGGY 60
Query: 219 RPSCLGNKCMNPCAGQCGINAKCEVRGATPICSCPRDMTGDPFVRCRPFDKYVAPLINDY 278
+ C ++P C T + + ++
Sbjct: 61 KCQCEEGFQLDPHTKACKAVGSIAYLFFTNRHEVRKMTLDRSEYTSLIPNLRNVVALDTE 120
Query: 279 LKIYWRYQNNKTIFYVSLVSLNYPYVTPLPDDL 311
+ Y ++ + + L+ + D +
Sbjct: 121 VASNRIYWSDLSQRMICSTQLDRAHGVSSYDTV 153
>3v65_B Low-density lipoprotein receptor-related protein; laminin-G,
beta-propeller, protein binding; 3.30A {Rattus
norvegicus}
Length = 386
Score = 36.7 bits (84), Expect = 0.011
Identities = 21/149 (14%), Positives = 37/149 (24%), Gaps = 23/149 (15%)
Query: 8 DPCSPNPCGSNTQCNVASNRPVCSCLPGHWGNPLTYC--QRGECQDHSDCSHSKACKEYR 65
+ C+ N G +C + C+C G+ EC + CS
Sbjct: 4 ENCNVNNGGCAQKCQMIRGAVQCTCHTGYRLTEDGRTCQDVNECAEEGYCSQG------- 56
Query: 66 CVDVCAGQCGVNSECNVRNHIPVCSCPPGYTGDPLTQCRRFDPQELCDRSPCGVNTRCEV 125
C C C GY P + + E ++ R +
Sbjct: 57 --------------CTNSEGAFQCWCEAGYELRPDRRSCKALGPEPVLLFANRIDIRQVL 102
Query: 126 INMVPTCSCLPGYTGSPLSGCRHECDSDY 154
+ L + H + +
Sbjct: 103 PHRSEYTLLLNNLENAIALDFHHRRELVF 131
Score = 32.1 bits (72), Expect = 0.25
Identities = 34/202 (16%), Positives = 52/202 (25%), Gaps = 36/202 (17%)
Query: 112 CDRSPCGVNTRCEVINMVPTCSCLPGYTGSPLSGCRHECDSDYDCGPSQSCVNYKCANPC 171
C+ + G +C++I C+C GY L+ C +C C
Sbjct: 6 CNVNNGGCAQKCQMIRGAVQCTCHTGYR---LTEDGRTCQDVNECAEEGYCSQ------- 55
Query: 172 ASGACAPTAQCEVRNHRAVCSCPVGYLGDPYTSCRA----ECLAHSDCPTDRPSCLGNKC 227
C C C GY P E + D L ++
Sbjct: 56 ---------GCTNSEGAFQCWCEAGYELRPDRRSCKALGPEPVLLFANRIDIRQVLPHRS 106
Query: 228 MNPCAGQCGINAKCEVRGATPICSCPRDMTGDPFVRCRPFDKYVAPLINDYL-------- 279
NA D+T D +R V +++ L
Sbjct: 107 EYTLLLNNLENAIALDFHHRRELVFWSDVTLDRILRANLNGSNVEEVVSTGLESPGGLAV 166
Query: 280 -----KIYWRYQNNKTIFYVSL 296
K+YW I +L
Sbjct: 167 DWVHDKLYWTDSGTSRIEVANL 188
>2vh0_B Activated factor XA light chain; serine protease, EGF-like domain,
blood coagulation, polymorphism, glycoprotein,
hydroxylation; HET: GSI; 1.7A {Homo sapiens} PDB:
1ezq_B* 1f0s_B* 1ksn_B* 1f0r_B* 1lpk_A* 1lpz_A* 1lqd_A*
1nfw_B* 1nfx_B* 1nfy_B* 2boh_A* 2cji_B* 1lpg_A* 2j34_B*
2j38_B* 2j2u_B* 2j94_B* 2j95_B* 2uwl_B* 2j4i_B* ...
Length = 134
Score = 34.6 bits (80), Expect = 0.016
Identities = 22/139 (15%), Positives = 34/139 (24%), Gaps = 28/139 (20%)
Query: 13 NPCGSNTQCNVASNRPVCSCLPGHWGNPLTYCQRGECQDHSDCSHSKACKEYRCVDVCAG 72
C T + + + +D C S + +C D
Sbjct: 10 RECMEETCSYEEAREVFEDSDKTNEFWN-------KYKDGDQCETSPCQNQGKCKDGLGE 62
Query: 73 QCGVNSECNVRNHIPVCSCPPGYTGDPLTQCRRFDPQELCDRSPCGVNTRCEVINMVPTC 132
C+C G+ G C ++LC + C C
Sbjct: 63 Y--------------TCTCLEGFEG---KNCEL-FTRKLCSLDNGDCDQFCHEEQNSVVC 104
Query: 133 SCLPGYTGSPLSGCRHECD 151
SC GYT + C
Sbjct: 105 SCARGYTLAD---NGKACI 120
>2vj3_A Neurogenic locus notch homolog protein 1; transcription,
metal-binding, transmembrane, developmental protein,
notch signaling pathway; 2.60A {Homo sapiens} SCOP:
g.3.11.1 g.3.11.1 g.3.11.1 PDB: 1toz_A 2rqz_A* 2rr0_A
2rr2_A*
Length = 135
Score = 34.1 bits (79), Expect = 0.019
Identities = 31/112 (27%), Positives = 41/112 (36%), Gaps = 26/112 (23%)
Query: 89 CSCPPGYTGDPLTQCRRFDPQELCDRSPCGVNTRCEVINMVPTCSCLPGYTGSPLSGCRH 148
C C GYTG +C D E C +PC + C C C+PGY G
Sbjct: 30 CQCLQGYTG---PRCEI-DVNE-CVSNPCQNDATCLDQIGEFQCICMPGYEGV------- 77
Query: 149 ECDSDYDCGPSQSCVNYKCANPCASGACAPTAQCEVRNHRAVCSCPVGYLGD 200
C+ + D CAS C +C + + C CP G+ G
Sbjct: 78 HCEVNTD--------------ECASSPCLHNGRCLDKINEFQCECPTGFTGH 115
Score = 30.3 bits (69), Expect = 0.39
Identities = 34/132 (25%), Positives = 45/132 (34%), Gaps = 26/132 (19%)
Query: 10 CSPNPCGSNTQCNVASNRPVCSCLPGHWGNPLTYCQRGECQDHSDCSHSKACKEYRCVDV 69
NPC +C C CL G+ G C+ D ++C +
Sbjct: 10 LGANPCEHAGKCINTLGSFECQCLQGYTG---PRCE----IDVNECVSNP---------- 52
Query: 70 CAGQCGVNSECNVRNHIPVCSCPPGYTGDPLTQCRRFDPQELCDRSPCGVNTRCEVINMV 129
C ++ C + C C PGY G C + E C SPC N RC
Sbjct: 53 ----CQNDATCLDQIGEFQCICMPGYEG---VHCEV-NTDE-CASSPCLHNGRCLDKINE 103
Query: 130 PTCSCLPGYTGS 141
C C G+TG
Sbjct: 104 FQCECPTGFTGH 115
Score = 27.2 bits (61), Expect = 4.8
Identities = 22/91 (24%), Positives = 35/91 (38%), Gaps = 21/91 (23%)
Query: 8 DPCSPNPCGSNTQCNVASNRPVCSCLPGHWGNPLTYCQRGECQDHSDCSHSKACKEYRCV 67
+ C NPC ++ C C C+PG+ G +C+ + +C+ S
Sbjct: 46 NECVSNPCQNDATCLDQIGEFQCICMPGYEG---VHCE----VNTDECASSP-------- 90
Query: 68 DVCAGQCGVNSECNVRNHIPVCSCPPGYTGD 98
C N C + + C CP G+TG
Sbjct: 91 ------CLHNGRCLDKINEFQCECPTGFTGH 115
>1gl4_A Nidogen-1, entactin; immunoglobulin-like domain, extracellular
matrix; HET: EPE; 2.0A {Mus musculus} SCOP: d.22.1.2
g.3.11.5 PDB: 1h4u_A
Length = 285
Score = 35.1 bits (80), Expect = 0.028
Identities = 15/66 (22%), Positives = 24/66 (36%)
Query: 73 QCGVNSECNVRNHIPVCSCPPGYTGDPLTQCRRFDPQELCDRSPCGVNTRCEVINMVPTC 132
QC V++EC C C YTG+ PQ + + + + +V
Sbjct: 14 QCSVHAECRDYATGFCCRCVANYTGNGRQCVAEGSPQRVNGKVKGRIFVGSSQVPVVFEN 73
Query: 133 SCLPGY 138
+ L Y
Sbjct: 74 TDLHSY 79
>1aut_L Activated protein C; serine proteinase, plasma calcium binding,
glycoprotein, HYD hydrolase inhibitor complex, blood
clotting; HET: 0G6; 2.80A {Homo sapiens} SCOP: g.3.11.1
g.3.11.1 PDB: 3f6u_L*
Length = 114
Score = 33.1 bits (76), Expect = 0.030
Identities = 22/106 (20%), Positives = 28/106 (26%), Gaps = 8/106 (7%)
Query: 61 CKEYRCVDVCAGQCGVNSECNVRNHIPVCSCPPGYTGDPLTQCRRFDPQELCDRSPCGVN 120
C CA C + C C C G+ G + F C G
Sbjct: 9 CLVLPLEHPCASLCCGHGTCIDGIGSFSCDCRSGWEGRFCQREVSFLN---CSLDNGGCT 65
Query: 121 TRCEVINMVPTCSCLPGYTGSPLSGCRHECD--SDYDCGPSQSCVN 164
C CSC PGY +C + CG +
Sbjct: 66 HYCLEEVGWRRCSCAPGYKLGD---DLLQCHPAVKFPCGRPWKRME 108
>3fcs_B Integrin beta-3; beta propeller, rossmann fold, EGF domain, cell
adhesion, DI mutation, glycoprotein, HOST-virus
interaction, M phosphoprotein; HET: NAG MAN; 2.55A {Homo
sapiens} PDB: 3ije_B* 1jv2_B* 1l5g_B* 1m1x_B* 1u8c_B*
Length = 690
Score = 35.1 bits (80), Expect = 0.035
Identities = 42/259 (16%), Positives = 62/259 (23%), Gaps = 52/259 (20%)
Query: 7 GDPCSPNPCGSNTQCNVASNRPVCSCLPGHWGNPLTYCQRGECQDHSDCSHSKACKEYRC 66
+P S N VC C PG G+ C+ E + +E +
Sbjct: 441 AEPNSHRCNNGNGTFE----CGVCRCGPGWLGS---QCECSEEDYRPSQQDECSPREGQP 493
Query: 67 VDVCAGQCGVNSECNVRNHIPVCSCPPGYTGD---PLTQCRRFDPQELCDRSPCGVNTRC 123
V G+C C C C G +C F C + +C
Sbjct: 494 VCSQRGEC----LCGQ------CVCHSSDFGKITGKYCECDDFSC-VRYKGEMCSGHGQC 542
Query: 124 EVINMVPTCSCLPGYTGSPLSGCRHECDSDYDCGPSQSCVNYKCANPCASGACAPTAQCE 183
C C +TG C +D C S + C G+C
Sbjct: 543 SC----GDCLCDSDWTGY---YCNCTTRTD-TCMSSNGLLC-SGRGKCECGSC------- 586
Query: 184 VRNHRAVCSCPVGYLG---DPYTSCRAECLAHSDCPTDRPSCLGNKCMNPCAGQCGINAK 240
G G + +C C +C + G + N
Sbjct: 587 -------VCIQPGSYGDTCEKCPTCPDACTFKKECVECKKFDRGALH-----DENTCNRY 634
Query: 241 CEVRGATPICSCPRDMTGD 259
C +
Sbjct: 635 CRDEIESVKELKDTGKDAV 653
Score = 31.2 bits (70), Expect = 0.66
Identities = 43/246 (17%), Positives = 69/246 (28%), Gaps = 31/246 (12%)
Query: 10 CSPNPCGSNTQCNVASNRPVCSCLPGH--WGNPLTYCQRGECQDHSDCSHSKACKEYRCV 67
C G ++ + C P+ + Q DC C
Sbjct: 386 CMGLKIGDTVSFSIEAKVRGCPQEKEKSFTIKPVGFKDSLIVQVTFDCD----CACQAQA 441
Query: 68 DVCAGQCGVNSECNVRNHIPVCSCPPGYTGDP---LTQCRRFDPQELCDRSPCGVNTRCE 124
+ + +C + VC C PG+ G + R Q+ C
Sbjct: 442 EPNSHRCNNGNGTFECG---VCRCGPGWLGSQCECSEEDYRPSQQDECSPREGQPVCSQR 498
Query: 125 VINMVPTCSCLPGYTGSPLSGCRHECDSDYDCGPSQSCVNYKCAN--PCASGACAPTAQC 182
+ C C G ++G ECD D+ C + + C+ C+ G C C
Sbjct: 499 GECLCGQCVCHSSDFG-KITGKYCECD-DFSCVRYKGEM---CSGHGQCSCGDC----LC 549
Query: 183 EVRNHRAVCSCPVGYLGDPYTSCRAECLAHSDCPTDRPSCL-----GNKCMNP--CAGQC 235
+ C+C +S C C C+ G+ C C C
Sbjct: 550 DSDWTGYYCNCTTRT-DTCMSSNGLLCSGRGKCECGSCVCIQPGSYGDTCEKCPTCPDAC 608
Query: 236 GINAKC 241
+C
Sbjct: 609 TFKKEC 614
Score = 28.1 bits (62), Expect = 5.4
Identities = 22/146 (15%), Positives = 37/146 (25%), Gaps = 19/146 (13%)
Query: 90 SCPPGYTGDPLTQCRRFDPQELCDRSPCGVNTRCEVINMVPTCSCLPGYTGSPLSGCRHE 149
+C L C + S C G+ S + +
Sbjct: 373 TCLNNEVIPGLKSCMGLKIGDTVSFSIEAKVRGCPQEKEKSFTIKPVGFKDSLIVQVTFD 432
Query: 150 CDSDYDCGPSQSCVNYKCANPCASGACAPTAQCEVRNHRAVCSCPVGYLGDPYTSCRAEC 209
CD + + C +G VC C G+LG + EC
Sbjct: 433 CDCACQAQAEPNS------HRCNNGNGTFECG--------VCRCGPGWLGS-----QCEC 473
Query: 210 LAHSDCPTDRPSCLGNKCMNPCAGQC 235
P+ + C + C+ +
Sbjct: 474 SEEDYRPSQQDECSPREGQPVCSQRG 499
>1x7a_L Coagulation factor IX, light chain; inhibition, blood
clotting,hydrolase; HET: 187; 2.90A {Sus scrofa} SCOP:
g.3.11.1 g.3.11.1 PDB: 1pfx_L*
Length = 146
Score = 33.5 bits (77), Expect = 0.036
Identities = 25/120 (20%), Positives = 37/120 (30%), Gaps = 26/120 (21%)
Query: 4 YMGGDPCSPNPCGSNTQCNVASNRPVCSCLPGHWGNPLTYCQRGECQDHSDCSHSKACKE 63
Y+ GD C PNPC + C N C C G G C+ + C+ +
Sbjct: 45 YVDGDQCEPNPCLNGGLCKDDINSYECWCQVGFEGK--------NCELDATCNIKNGRCK 96
Query: 64 YRCVDVCAGQCGVNSECNVRNHIPVCSCPPGYTGDPLTQCRRFDPQELCDRSPCGVNTRC 123
C + +CSC GY ++ + PCG +
Sbjct: 97 QFC-------------KTGADSKVLCSCTTGYRL---APDQK--SCKPAVPFPCGRVSVS 138
Score = 31.2 bits (71), Expect = 0.28
Identities = 12/63 (19%), Positives = 18/63 (28%), Gaps = 8/63 (12%)
Query: 89 CSCPPGYTGDPLTQCRRFDPQELCDRSPCGVNTRCEVINMVPTCSCLPGYTGSPLSGCRH 148
C C G+ G C ++ + CSC GY +P +
Sbjct: 71 CWCQVGFEG---KNCELD--ATCNIKNGRCKQFCKTGADSKVLCSCTTGYRLAP---DQK 122
Query: 149 ECD 151
C
Sbjct: 123 SCK 125
>1mox_A Epidermal growth factor receptor; EGFR, receptor, complex,
transferase-growth F complex; HET: NAG FUC BMA MAN;
2.50A {Homo sapiens} SCOP: c.10.2.5 c.10.2.5 g.3.9.1
g.3.9.1
Length = 501
Score = 34.9 bits (79), Expect = 0.038
Identities = 26/177 (14%), Positives = 44/177 (24%), Gaps = 11/177 (6%)
Query: 146 CRHECDSDYDCGPSQSCVNYKCANPCASGACAPTAQCEVRNHRAVC--SCPVGYLGDPYT 203
C +C C + +CA C + C A C +CP L +P T
Sbjct: 191 CAQQCSGRCRGKSPSDCCHNQCAAGCTGPRESDCLVCRKFRDEATCKDTCPPLMLYNPTT 250
Query: 204 SCRAEC---------LAHSDCPTDRPSCLGNKCMNPCAGQCGINAKCEVRGATPICSCPR 254
CP + C+ C + VR R
Sbjct: 251 YQMDVNPEGKYSFGATCVKKCPRNYVVTDHGSCVRACGADSYEMEEDGVRKCKKCEGPCR 310
Query: 255 DMTGDPFVRCRPFDKYVAPLINDYLKIYWRYQNNKTIFYVSLVSLNYPYVTPLPDDL 311
+ + + + K + I V+ ++ + PL
Sbjct: 311 KVCNGIGIGEFKDSLSINATNIKHFKNCTSISGDLHILPVAFRGDSFTHTPPLDPQE 367
Score = 28.7 bits (63), Expect = 3.0
Identities = 27/203 (13%), Positives = 44/203 (21%), Gaps = 19/203 (9%)
Query: 10 CSPNPCGSNTQCNVASNRPVCSCLPGHWGNPLTYCQRGECQDHSDCSHSKACKEYRCVDV 69
S + C G + C C +
Sbjct: 152 MSMDFQNHLGSCQKCDPSCPNGSCWGAGEENCQKLTKIICAQQCSGRCRGKSPSDCCHNQ 211
Query: 70 CAGQCGVNSE-----CNVRNHIPVC--SCPPGYTGDPLTQCRRFDPQELCDRSPCGVNTR 122
CA C E C C +CPP +P T D +P G
Sbjct: 212 CAAGCTGPRESDCLVCRKFRDEATCKDTCPPLMLYNPTTYQ--------MDVNPEG---- 259
Query: 123 CEVINMVPTCSCLPGYTGSPLSGCRHECDSDYDCGPSQSCVNYKCANPCASGACAPTAQC 182
C Y + C C +D K C
Sbjct: 260 KYSFGATCVKKCPRNYVVTDHGSCVRACGADSYEMEEDGVRKCKKCEGPCRKVCNGIGIG 319
Query: 183 EVRNHRAVCSCPVGYLGDPYTSC 205
E ++ ++ + + + + +
Sbjct: 320 EFKDSLSINATNIKHFKNCTSIS 342
>4d90_A EGF-like repeat and discoidin I-like domain-conta protein 3; RGD
finger, cell adhesion, innate immunity, extracellular MA
protein; HET: NGA NAG FUC; 2.60A {Homo sapiens}
Length = 143
Score = 33.2 bits (76), Expect = 0.043
Identities = 22/126 (17%), Positives = 32/126 (25%), Gaps = 35/126 (27%)
Query: 89 CSCPPGYTG-------DPLTQCRRFDPQELCDRSPCGVNTRCEVINMVP-------TCSC 134
C CP G+T + + C +PC CE+ C C
Sbjct: 25 CECPDGFTDPNCSSVVEVASDEEEPTSAGPCTPNPCHNGGTCEISEAYRGDTFIGYVCKC 84
Query: 135 LPGYTGSPLSGCRHECDSDYDCGPSQSCVNYKCANPCASGACAPTAQCEVRNHRAVCSCP 194
G+ G C + + C C C C CP
Sbjct: 85 PRGFNGI-------HCQHNIN--------------ECEVEPCKNGGICTDLVANYSCECP 123
Query: 195 VGYLGD 200
++G
Sbjct: 124 GEFMGR 129
Score = 32.0 bits (73), Expect = 0.11
Identities = 32/138 (23%), Positives = 46/138 (33%), Gaps = 15/138 (10%)
Query: 8 DPCSPNPCGSNTQC--NVASNRPVCSCLPGHWGNPLTYCQR--GECQDHSDCSHSKACKE 63
D C PNPC + C +A C C G C D + + + C
Sbjct: 1 DICDPNPCENGGICLPGLADGSFSCECPDGFTD---PNCSSVVEVASDEEEPTSAGPCTP 57
Query: 64 YRCVDVCAGQC-GVNSECNVRNHIPVCSCPPGYTGDPLTQCRRFDPQELCDRSPCGVNTR 122
C + G C + VC CP G+ G C+ + E C+ PC
Sbjct: 58 NPCHN--GGTCEISEAYRGDTFIGYVCKCPRGFNG---IHCQH-NINE-CEVEPCKNGGI 110
Query: 123 CEVINMVPTCSCLPGYTG 140
C + +C C + G
Sbjct: 111 CTDLVANYSCECPGEFMG 128
Score = 31.6 bits (72), Expect = 0.17
Identities = 32/157 (20%), Positives = 43/157 (27%), Gaps = 39/157 (24%)
Query: 112 CDRSPCGVNTRC--EVINMVPTCSCLPGYTGSPLSGCRHECDSDYDCGPSQSCVNYKCAN 169
CD +PC C + + +C C G+T C S + + A
Sbjct: 3 CDPNPCENGGICLPGLADGSFSCECPDGFTDP-------NCSSVVEVASDEEEPTS--AG 53
Query: 170 PCASGACAPTAQCEVRNHRAV-------CSCPVGYLGDPYTSCRAECLAHSDCPTDRPSC 222
PC C CE+ C CP G+ G C + C
Sbjct: 54 PCTPNPCHNGGTCEISEAYRGDTFIGYVCKCPRGFNGI-------------HCQHNINEC 100
Query: 223 LGNKCMNPCAGQCGINAKCEVRGATPICSCPRDMTGD 259
C N C A C CP + G
Sbjct: 101 EVEPCKN--------GGICTDLVANYSCECPGEFMGR 129
>2ygq_A WIF-1, WNT inhibitory factor 1; signaling protein, WNT signaling
pathway, WNT antagonist, MO cancer, glycosaminoglycan;
HET: PCF NAG FUC SCR; 3.95A {Homo sapiens}
Length = 324
Score = 34.4 bits (79), Expect = 0.049
Identities = 42/243 (17%), Positives = 64/243 (26%), Gaps = 52/243 (21%)
Query: 6 GGDPCSPNPCGSNTQCNVASNRPVCSCLPGHWGNPLTYCQRGE----CQDHSDCSHSKAC 61
G N N + + + CQ+ E C++ C+ + C
Sbjct: 111 GKQDGVAAFEVDVIVMNSEGNTILKTPQNAIFF---KTCQQAECPGGCRNGGFCNERRIC 167
Query: 62 K-------EYRCVDVCAGQCGVNSECNVRNHIPVCSCPPGYTGDPLTQCRRFDPQELCDR 114
+ + +C +C C C CPPG+ G C +
Sbjct: 168 ECPDGFHGPHCEKALCTPRCMNGGLCVTPG---FCICPPGFYGV---NC-----DKANCS 216
Query: 115 SPCGVNTRCEVINMVPTCSCLPGYTGS------PLSGCRH--ECDSDYDCGPSQSCVNYK 166
+ C C C C PG G CR+ +C C S+
Sbjct: 217 TTCFNGGTCFYPG---KCICPPGLEGEQCEISKCPQPCRNGGKCIGKSKCKCSKGYQGDL 273
Query: 167 CANPCASGACAPTAQCEVRNHRAVCSCPVGYLGDPYTSCRAECLAHSDCPTDRPSCLGNK 226
C+ P C C N C C G+ G C + L
Sbjct: 274 CSKPVCEPGCGAHGTCHEPN---KCQCQEGWHGR-------------HCNKRYEASLIGT 317
Query: 227 CMN 229
+
Sbjct: 318 KHH 320
Score = 33.7 bits (77), Expect = 0.085
Identities = 32/172 (18%), Positives = 50/172 (29%), Gaps = 42/172 (24%)
Query: 9 PCSPNPCGSNTQCNVASNRPVCSCLPGHWGNPLTYCQRGECQDHSDCSHSKAC-KEYRC- 66
C + C C C PG +G C + C + C + C +C
Sbjct: 181 ALCTPRCMNGGLCV---TPGFCICPPGFYG---VNCDKANC--STTCFNGGTCFYPGKCI 232
Query: 67 -----------VDVCAGQCGVNSECNVRNHIPVCSCPPGYTGDPLTQCRRFDPQELCDRS 115
+ C C +C ++ C C GY GD C +
Sbjct: 233 CPPGLEGEQCEISKCPQPCRNGGKCIGKS---KCKCSKGYQGD---LC-----SKPVCEP 281
Query: 116 PCGVNTRCEVINMVPTCSCLPGYTGSPLSGCRHECDSDYDCGPSQSCVNYKC 167
CG + C N C C G+ G C+ Y+ + ++
Sbjct: 282 GCGAHGTCHEPN---KCQCQEGWHGR-------HCNKRYEASLIGTKHHHHH 323
Score = 32.9 bits (75), Expect = 0.15
Identities = 37/212 (17%), Positives = 51/212 (24%), Gaps = 37/212 (17%)
Query: 5 MGGDPCSPNPCGSNTQCNVASNRPVCSCLPGHWGNPLTYCQRGECQDHSDCSHSKACKEY 64
+ DP P + + CL G +
Sbjct: 82 IMADPTVNVPLLGTVPHKASVVQVGFPCLGKQDGVAAFEVDVIVMNSEGNTILKTPQNAI 141
Query: 65 R----CVDVCAGQCGVNSECNVRNHIPVCSCPPGYTGDPLTQCRRFDPQELCDRSPCGVN 120
C G C CN R +C CP G+ G ++ C
Sbjct: 142 FFKTCQQAECPGGCRNGGFCNERR---ICECPDGFHGP--------HCEKALCTPRCMNG 190
Query: 121 TRCEVINMVPTCSCLPGYTGSPLSGCRHECDSDYDCGPSQSCVNY------------KCA 168
C C C PG+ G C S C +C +C
Sbjct: 191 GLCVTPG---FCICPPGFYG---VNCDKANCST-TCFNGGTCFYPGKCICPPGLEGEQCE 243
Query: 169 NPCASGACAPTAQCEVRNHRAVCSCPVGYLGD 200
C +C ++ C C GY GD
Sbjct: 244 ISKCPQPCRNGGKCIGKS---KCKCSKGYQGD 272
>1yo8_A Thrombospondin-2; EGF, Ca(2+)-binding domains, lectin domain,
disulfide, cell; HET: NAG MAN; 2.60A {Homo sapiens} PDB:
2rhp_A*
Length = 634
Score = 34.6 bits (79), Expect = 0.054
Identities = 36/156 (23%), Positives = 44/156 (28%), Gaps = 19/156 (12%)
Query: 90 SCPPGYTGDPLTQCRRFDPQELCDRSPCGVNTRCEVINMVPTCSCL---PGYTGSPLSGC 146
CP G+ G+ T C D L + +N P CL P Y G+ G
Sbjct: 29 FCPVGFLGNG-THCEDLDECALVPDICFSTSKVPRCVNTQPGFHCLPCPPRYRGNQPVGV 87
Query: 147 RHECDSDYDCGPSQSCVNYKCANPCASGA--CAPTAQC----EVRNHRAVCSCPVGYLGD 200
E Q C NPC C A+C + C C GY GD
Sbjct: 88 GLEAAKTEK----QVCE---PENPCKDKTHNCHKHAECIYLGHFSDPMYKCECQTGYAGD 140
Query: 201 PYTSCRAECLAHSDCPTDRPSCLGNKCMNPCAGQCG 236
L P C N + C
Sbjct: 141 GLICGEDSDL--DGWPNLNLVCATNATYHCIKDNCP 174
Score = 31.1 bits (70), Expect = 0.64
Identities = 45/227 (19%), Positives = 54/227 (23%), Gaps = 48/227 (21%)
Query: 8 DPCSPNPCGSNTQC-NVASNRPVC-SCLPGHWGNPLTYCQRGECQDHSDCSHSKACKEYR 65
D C NPC QC + C C G GN EC D S + K R
Sbjct: 4 DGCLSNPCFPGAQCSSFPDGSWSCGFCPVGFLGNGTHCEDLDECALVPDICFSTS-KVPR 62
Query: 66 CVDVCAG-QCGVNSECNVRNHIPVCSCPPGYTGDPLTQCRRFDPQE-----------LCD 113
CV+ G C CPP Y G+ +
Sbjct: 63 CVNTQPGFHCL--------------PCPPRYRGNQPVGVGLEAAKTEKQVCEPENPCKDK 108
Query: 114 RSPCGVNTRC----EVINMVPTCSCLPGYTGSPLSGCRHECDSDYDCGPSQSCVNYKCAN 169
C + C + + C C GY G L C D D
Sbjct: 109 THNCHKHAECIYLGHFSDPMYKCECQTGYAGDGLI-----CGEDSDL----------DGW 153
Query: 170 PCASGACAPTAQCEVRNHRAVCSCPVGYLGDPYTSCRAECLAHSDCP 216
P + CA A G C D
Sbjct: 154 PNLNLVCATNATYHCIKDNCPHLPNSGQEDFDKDGIGDACDDDDDND 200
Score = 28.8 bits (64), Expect = 3.1
Identities = 21/134 (15%), Positives = 34/134 (25%), Gaps = 12/134 (8%)
Query: 50 QDHSDCSHSKACKEYRCVDVC-----AGQCGVNSEC----NVRNHIPVCSCPPGYTGDPL 100
Q + ++ C C ++EC + + + C C GY GD L
Sbjct: 83 QPVGVGLEAAKTEKQVCEPENPCKDKTHNCHKHAECIYLGHFSDPMYKCECQTGYAGDGL 142
Query: 101 TQCRRFDPQELCDRS---PCGVNTRCEVINMVPTCSCLPGYTGSPLSGCRHECDSDYDCG 157
D + + C N + G + D D D
Sbjct: 143 ICGEDSDLDGWPNLNLVCATNATYHCIKDNCPHLPNSGQEDFDKDGIGDACDDDDDNDGV 202
Query: 158 PSQSCVNYKCANPC 171
+ NP
Sbjct: 203 TDEKDNCQLLFNPR 216
>1z1y_A Ookinete surface protein PVS25; four EGF-like domains, cell
adhesion; HET: MLY; 2.00A {Plasmodium vivax} PDB: 1z27_A
1z3g_A
Length = 186
Score = 33.5 bits (75), Expect = 0.070
Identities = 27/167 (16%), Positives = 36/167 (21%), Gaps = 11/167 (6%)
Query: 10 CSPNPCGSNTQCNVASNRPVCSCLPGHWGNPLTYCQRGECQDHSDCSHSKACKEYRCVDV 69
+ + N Q SN C C G C++ ++C
Sbjct: 7 VTVDTICXNGQLVQMSNHFXCMCNEGLVHLS-----ENTCEEXNECXXETLGXACGEFGQ 61
Query: 70 CAGQCGVNSECNVRNHIPVCSCPPGYTGDPLTQCRRFDPQELCDRSPCGVNTRCEVINMV 129
C C C GYT C Q
Sbjct: 62 CIENPDPAQVNMY-----XCGCIEGYTLXE-DTCVLDVCQYXNCGESGECIVEYLSEIQS 115
Query: 130 PTCSCLPGYTGSPLSGCRHECDSDYDCGPSQSCVNYKCANPCASGAC 176
CSC G +P + C + N C N C
Sbjct: 116 AGCSCAIGXVPNPEDEXXCTXTGETACQLXCNTDNEVCXNVEGVYXC 162
Score = 27.7 bits (60), Expect = 4.9
Identities = 19/150 (12%), Positives = 31/150 (20%), Gaps = 6/150 (4%)
Query: 66 CVDVCAGQCGVNSECNVRNHIPVCSCPPGYTGDPLTQCRRFDP------QELCDRSPCGV 119
V N + ++ C C G C + C +
Sbjct: 4 ASAVTVDTICXNGQLVQMSNHFXCMCNEGLVHLSENTCEEXNECXXETLGXACGEFGQCI 63
Query: 120 NTRCEVINMVPTCSCLPGYTGSPLSGCRHECDSDYDCGPSQSCVNYKCANPCASGACAPT 179
+ C C+ GYT + C + V Y A +CA
Sbjct: 64 ENPDPAQVNMYXCGCIEGYTLXEDTCVLDVCQYXNCGESGECIVEYLSEIQSAGCSCAIG 123
Query: 180 AQCEVRNHRAVCSCPVGYLGDPYTSCRAEC 209
+ + C
Sbjct: 124 XVPNPEDEXXCTXTGETACQLXCNTDNEVC 153
>1zlg_A Anosmin 1; insulin-like growth factor receptor Cys-rich fold, WHEY
acidic protein fold, fibronectin type III fold, hormone-
growth factor complex; NMR {Homo sapiens}
Length = 680
Score = 34.2 bits (77), Expect = 0.077
Identities = 21/148 (14%), Positives = 39/148 (26%), Gaps = 18/148 (12%)
Query: 53 SDCSHSKACKEYRCVDVCAGQCGVNSECNVR---NHIPVCSCPPGYTGDP-LTQCRRFDP 108
+ + + + RC C + N+ + C L C+
Sbjct: 13 DESLSAGSVQRARCASRCLSLQITRISAFFQHFQNNGSLVWCQNHKQCSKCLEPCKESGD 72
Query: 109 ------QELCDRSPCGVNTRC-------EVINMVPTCSCLPGYTGSPLSG-CRHECDSDY 154
Q C+ + C + I +V C S + C C+ D
Sbjct: 73 LRKHQCQSFCEPLFPKKSYECLTSCEFLKYILLVKQGDCPAPEKASGFAAACVESCEVDN 132
Query: 155 DCGPSQSCVNYKCANPCASGACAPTAQC 182
+C + C + C + C
Sbjct: 133 ECSGVKKCCSNGCGHTCQVPKTLYKGVP 160
Score = 33.0 bits (74), Expect = 0.15
Identities = 27/188 (14%), Positives = 50/188 (26%), Gaps = 13/188 (6%)
Query: 99 PLTQCRRFDPQELCDRSPCGVNTRCEVINMVPTCSCLPGYTGSPLS-GCRHECDSDYDCG 157
P R + L S RC + + + + + G C + C
Sbjct: 4 PGAAAARRLDESLSAGSV--QRARCASRCLSLQITRISAFFQHFQNNGSLVWCQNHKQC- 60
Query: 158 PSQSCVNYKCANPCASGACAPTAQCEVRNHRAVCSCPVGYLGDPYTSCRAECLAHSDCPT 217
S+ K + C + C +L + +C A
Sbjct: 61 -SKCLEPCKESGDLRKHQCQSFCEPLFPKKSYECLTSCEFLKYILLVKQGDCPAP----- 114
Query: 218 DRPSCLGNKCMNPCAGQCGINA--KCEVRGATPICSCPRDMTGDPFVRCRPFDKYVAPLI 275
++ S C+ C + KC G C P+ + + L
Sbjct: 115 EKASGFAAACVESCEVDNECSGVKKCCSNGCGHTCQVPKTLYKGV-PLKPRKELRFTELQ 173
Query: 276 NDYLKIYW 283
+ L++ W
Sbjct: 174 SGQLEVKW 181
>2bou_A EGF-like module containing mucin-like hormone receptor-like 2
precursor; CD97, CD55, 7TM, calcium-binding, cell
adhesion, EGF-LI domain; 1.90A {Homo sapiens} PDB:
2bo2_A 2box_A
Length = 143
Score = 32.5 bits (74), Expect = 0.088
Identities = 26/116 (22%), Positives = 35/116 (30%), Gaps = 21/116 (18%)
Query: 67 VDVCAGQCGVNSECNVRNHIPVCSCPPGYTGD------PLTQCRRFDPQELCDRSPCGVN 120
CA C +S C C C PG++ P+ C + + CG
Sbjct: 2 SRGCARWCPQDSSCVNATA---CRCNPGFSSFSEIITTPMETCDDINECATLSKVSCGKF 58
Query: 121 TRCEVINMVPTCSCLPGYTGSPLSGCRH-----------ECDSD-YDCGPSQSCVN 164
+ C C C PGY + EC S + C S C N
Sbjct: 59 SDCWNTEGSYDCVCSPGYEPVSGAKTFKNESENTCQDVDECSSGQHQCDSSTVCFN 114
Score = 31.7 bits (72), Expect = 0.15
Identities = 29/144 (20%), Positives = 44/144 (30%), Gaps = 24/144 (16%)
Query: 8 DPCSPNPCGSNTQCNVASNRPVCSCLPGHWGNPLTYCQRGE-CQDHSDCSHSKACKEYRC 66
C+ C ++ C N C C PG E C D ++C+
Sbjct: 3 RGCA-RWCPQDSSCV---NATACRCNPGFSSFSEIITTPMETCDDINECATLSKV----- 53
Query: 67 VDVCAGQCGVNSECNVRNHIPVCSCPPGYTGDPLTQCRRFDPQELC--------DRSPCG 118
CG S+C C C PGY + + + + C + C
Sbjct: 54 ------SCGKFSDCWNTEGSYDCVCSPGYEPVSGAKTFKNESENTCQDVDECSSGQHQCD 107
Query: 119 VNTRCEVINMVPTCSCLPGYTGSP 142
+T C +C C PG+
Sbjct: 108 SSTVCFNTVGSYSCRCRPGWKPRH 131
>3qcw_A Neurexin-1-alpha; synaptic adhesion molecule, cell adhesion; HET:
NAG; 2.65A {Bos taurus} PDB: 3r05_A* 3poy_A*
Length = 1245
Score = 34.0 bits (77), Expect = 0.089
Identities = 17/95 (17%), Positives = 28/95 (29%), Gaps = 11/95 (11%)
Query: 129 VPTCSCLPGYTG----------SPLSGCRHECDSDYDCGPSQSCVNYKCANPCASGACAP 178
+ + + G L E D + S + G C
Sbjct: 141 LASVREREPFKGWIRDVRVQSSLALPVDSGEVKLDDEPPNSGGGSPCEAGEEGEGGVCLN 200
Query: 179 TAQCEVRNHRAVCSCPV-GYLGDPYTSCRAECLAH 212
C V + +AVC C G+ G + + E +A
Sbjct: 201 GGVCSVVDDQAVCDCSRTGFRGKDCSQGKEEYIAT 235
Score = 32.9 bits (74), Expect = 0.20
Identities = 13/52 (25%), Positives = 18/52 (34%), Gaps = 1/52 (1%)
Query: 8 DPCSPNPCGSNTQCNVASNRPVCSCLPGHWGNPLTYCQRGECQDHSDCSHSK 59
PC NPC +N C NR VC C + + + + K
Sbjct: 620 KPCLSNPCKNNGMCRDGWNRYVCDCSGTGYLGR-SCEREATVLSYDGSMFMK 670
Score = 32.5 bits (73), Expect = 0.25
Identities = 17/118 (14%), Positives = 29/118 (24%), Gaps = 5/118 (4%)
Query: 3 YYMGGDPCSPNPCGSNTQCNVASNRPV---CSCLPGHWGNPLTYCQRGECQDHSDCSHSK 59
++GG P R + GE + + +S
Sbjct: 123 LFVGGLPPELRAAALKLTLASVREREPFKGWIRDVRVQSSLALPVDSGEVKLDDEPPNSG 182
Query: 60 ACKEYRCVDVCAGQ-CGVNSECNVRNHIPVCSCP-PGYTGDPLTQCRRFDPQELCDRS 115
+ G C C+V + VC C G+ G +Q +
Sbjct: 183 GGSPCEAGEEGEGGVCLNGGVCSVVDDQAVCDCSRTGFRGKDCSQGKEEYIATFKGSE 240
Score = 30.2 bits (67), Expect = 1.3
Identities = 14/82 (17%), Positives = 22/82 (26%), Gaps = 7/82 (8%)
Query: 85 HIPVCSCPPGYTGDPLTQCRRFDPQELCDRSPCGVNTRCEVINMVPTCSC-LPGYTGSPL 143
+ + PP G + E + C C V++ C C G+ G
Sbjct: 171 EVKLDDEPPNSGG-----GSPCEAGEEGEGGVCLNGGVCSVVDDQAVCDCSRTGFRG-KD 224
Query: 144 SGCRHECDSDYDCGPSQSCVNY 165
E G C +
Sbjct: 225 CSQGKEEYIATFKGSEYFCYDL 246
Score = 30.2 bits (67), Expect = 1.3
Identities = 11/94 (11%), Positives = 19/94 (20%), Gaps = 1/94 (1%)
Query: 191 CSCPVGYLGDPYTSCRAECLAHSDCPTDRPSCLGNKCMNPCAGQ-CGINAKCEVRGATPI 249
V + + D P + + G C C V +
Sbjct: 153 WIRDVRVQSSLALPVDSGEVKLDDEPPNSGGGSPCEAGEEGEGGVCLNGGVCSVVDDQAV 212
Query: 250 CSCPRDMTGDPFVRCRPFDKYVAPLINDYLKIYW 283
C C R + ++Y
Sbjct: 213 CDCSRTGFRGKDCSQGKEEYIATFKGSEYFCYDL 246
Score = 29.8 bits (66), Expect = 1.9
Identities = 8/60 (13%), Positives = 15/60 (25%)
Query: 306 PLPDDLCEPNPCGENAKCQPGYDKSGKDRPVCTCLPGYVGDALTYCRRGECQSDAECNYD 365
P C+ + C C +D D + + D T + +
Sbjct: 1014 EGPSTTCQEDSCSNQGVCLQQWDGFSCDCSMTSFSGPLCNDPGTTYIFSKGGGQITYKWP 1073
Score = 28.7 bits (63), Expect = 3.8
Identities = 8/62 (12%), Positives = 12/62 (19%), Gaps = 7/62 (11%)
Query: 8 DPCSPNPCGSNTQCNVASNRPVCSCLPGHWGNPLTYCQRGECQDHSDCSHSKACKEYRCV 67
C + C + C + C C +T C D
Sbjct: 1018 TTCQEDSCSNQGVCLQQWDGFSCDC-------SMTSFSGPLCNDPGTTYIFSKGGGQITY 1070
Query: 68 DV 69
Sbjct: 1071 KW 1072
Score = 27.9 bits (61), Expect = 7.7
Identities = 11/88 (12%), Positives = 19/88 (21%), Gaps = 10/88 (11%)
Query: 213 SDCPTDRPSCLGNKCMNPCAGQCGINAKCEVRGATPICSCPRDMTGDPFVRCRPFDKYVA 272
C +C + C N C + C C P C
Sbjct: 1011 RGCEGPSTTCQEDSCSN--------QGVCLQQWDGFSCDCSMTSFSGPL--CNDPGTTYI 1060
Query: 273 PLINDYLKIYWRYQNNKTIFYVSLVSLN 300
Y N++ +++
Sbjct: 1061 FSKGGGQITYKWPPNDRPSTRADRLAIG 1088
>3asi_A Neurexin-1-alpha; beta-sandwich, cell adhesion, synapse maturation,
neuroligin glycosylation, membrane; HET: NAG; 2.30A {Bos
taurus}
Length = 410
Score = 33.4 bits (76), Expect = 0.099
Identities = 7/51 (13%), Positives = 11/51 (21%), Gaps = 2/51 (3%)
Query: 8 DPCSPNPCGSNTQCNVASNRPVCSCLPGHWGNPLTYCQRGECQDHSDCSHS 58
C + C + C + C C + P C
Sbjct: 186 TTCQEDSCSNQGVCLQQWDGFSCDCSMTSFSGP--LCNDPGTTYIFSKGGG 234
Score = 30.7 bits (69), Expect = 0.75
Identities = 10/65 (15%), Positives = 17/65 (26%), Gaps = 10/65 (15%)
Query: 306 PLPDDLCEPNPCGENAKCQPGYDKSGKDRPVCTC-LPGYVG----DALTYCRRGECQSDA 360
P C+ + C C + D C C + + G D T +
Sbjct: 182 EGPSTTCQEDSCSNQGVCLQQW-----DGFSCDCSMTSFSGPLCNDPGTTYIFSKGGGQI 236
Query: 361 ECNYD 365
+
Sbjct: 237 TYKWP 241
Score = 29.2 bits (65), Expect = 2.3
Identities = 9/57 (15%), Positives = 15/57 (26%), Gaps = 5/57 (8%)
Query: 112 CDRSPCGVNTRCEVINMVPTCSC-LPGYTGSPLSGCRHECDSDYDCGPSQSCVNYKC 167
C C C +C C + ++G C + + YK
Sbjct: 188 CQEDSCSNQGVCLQQWDGFSCDCSMTSFSGPL---CNDPGTTYI-FSKGGGQITYKW 240
Score = 28.0 bits (62), Expect = 4.6
Identities = 11/85 (12%), Positives = 19/85 (22%), Gaps = 10/85 (11%)
Query: 215 CPTDRPSCLGNKCMNPCAGQCGINAKCEVRGATPICSCPRDMTGDPFVRCRPFDKYVAPL 274
C +C + C N C + C C P C
Sbjct: 181 CEGPSTTCQEDSCSN--------QGVCLQQWDGFSCDCSMTSFSGPL--CNDPGTTYIFS 230
Query: 275 INDYLKIYWRYQNNKTIFYVSLVSL 299
Y N++ +++
Sbjct: 231 KGGGQITYKWPPNDRPSTRADRLAI 255
Score = 27.3 bits (60), Expect = 9.5
Identities = 6/36 (16%), Positives = 11/36 (30%)
Query: 167 CANPCASGACAPTAQCEVRNHRAVCSCPVGYLGDPY 202
+ C +C+ C + C C + P
Sbjct: 184 PSTTCQEDSCSNQGVCLQQWDGFSCDCSMTSFSGPL 219
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 33.7 bits (76), Expect = 0.10
Identities = 27/179 (15%), Positives = 42/179 (23%), Gaps = 76/179 (42%)
Query: 5 MGGDPCSPNPCGSNTQC---NVASNRPVCSCLPG--HW---GN---------PL-TYCQR 46
+ G G +V + V + W N L +
Sbjct: 158 VLG-------SGK--TWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQ 208
Query: 47 GECQDHSDCSHSK-----------------ACKEY-RCV----DVCAGQC--GVNSECNV 82
+ S HS K Y C+ +V + N C +
Sbjct: 209 IDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFNLSCKI 268
Query: 83 ----RN-------------HIPVCSCPPGYTGDPL-------TQCRRFD-PQELCDRSP 116
R HI + T D + CR D P+E+ +P
Sbjct: 269 LLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNP 327
Score = 31.4 bits (70), Expect = 0.54
Identities = 16/71 (22%), Positives = 25/71 (35%), Gaps = 18/71 (25%)
Query: 253 PRDM-TGDPFVRCRPFDKYVAPLINDYLKI--YWRYQNNK---TIFYVSLVSLN------ 300
PR++ T +P +A I D L W++ N TI SL L
Sbjct: 319 PREVLTTNPRRLS-----IIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRK 373
Query: 301 -YPYVTPLPDD 310
+ ++ P
Sbjct: 374 MFDRLSVFPPS 384
>3fby_A COMP, cartilage oligomeric matrix protein; signature domain, cell
adhesion, disease mutation, dwarfism, EGF-like domain,
glycoprotein, secreted; HET: NAG MAN; 3.15A {Homo
sapiens}
Length = 551
Score = 32.6 bits (74), Expect = 0.23
Identities = 14/64 (21%), Positives = 22/64 (34%), Gaps = 4/64 (6%)
Query: 93 PGYTGDPLTQCRRFDPQELCDRSPCGVNTRC-EVINMVPTCSCLPGYTGSPLSGCRHECD 151
PG P+ S C + C + +C C G+ G+ + R D
Sbjct: 5 PGVPTSPVWWNSAQRFCPDGSPSECHEHADCVLERDGSRSCVCAVGWAGNGILCGR---D 61
Query: 152 SDYD 155
+D D
Sbjct: 62 TDLD 65
>2c4f_L Coagulation factor VII precursor; blood coagulation, serine
protease, EGF, EGF-like domain, GLA, receptor enzyme,
glycoprotein, hydrolase, protease; HET: CGU GLC FUC NAG
GIL; 1.72A {Homo sapiens} SCOP: g.3.11.1 g.3.11.1
g.32.1.1 PDB: 1w2k_L* 1w0y_L* 1z6j_L* 2b8o_L* 2aer_L*
2ec9_L* 2fir_L* 2a2q_L* 1fak_L* 1o5d_L* 1wqv_L* 1wss_L*
1wtg_L* 1wun_L* 1wv7_L* 1dan_L* 2aei_L* 2b7d_L* 2f9b_L*
2flb_L* ...
Length = 142
Score = 31.1 bits (71), Expect = 0.26
Identities = 24/121 (19%), Positives = 32/121 (26%), Gaps = 22/121 (18%)
Query: 4 YMGGDPCSPNPCGSNTQCNVASNRPVCSCLPGHWGNPLTYCQRGECQDHSDCSHSKACKE 63
Y GD C+ +PC + C +C CLP G C+ D +
Sbjct: 44 YSDGDQCASSPCQNGGSCKDQLQSYICFCLPAFEG---RNCE----THKDDQL-ICVNEN 95
Query: 64 YRCVDVCAGQCGVNSECNVRNHIPVCSCPPGYTGDPLTQCRRFDPQELCDRSPCGVNTRC 123
C C + C C GY+ PCG
Sbjct: 96 GGCEQYC---------SDHTGTKRSCRCHEGYSLL---ADGV-SCTP-TVEYPCGKIPIL 141
Query: 124 E 124
E
Sbjct: 142 E 142
Score = 28.8 bits (65), Expect = 1.6
Identities = 22/112 (19%), Positives = 31/112 (27%), Gaps = 20/112 (17%)
Query: 112 CDRSPCGVNTRCEVINMVPTCSCLPGYTGSPLSGCRHECDSDYDCGPSQSCVNYKCANPC 171
C SPC C+ C CLP + G C++ D N C C
Sbjct: 50 CASSPCQNGGSCKDQLQSYICFCLPAFEGR-------NCETHKDDQLICVNENGGCEQYC 102
Query: 172 ASGACAPTAQCEVRNHRAVCSCPVGYLGDPYTSCRAECLAHSDCPTDRPSCL 223
+ + C C GY + C + P + L
Sbjct: 103 ----------SDHTGTKRSCRCHEGYSLL---ADGVSCTPTVEYPCGKIPIL 141
Score = 26.5 bits (59), Expect = 9.3
Identities = 14/92 (15%), Positives = 19/92 (20%), Gaps = 25/92 (27%)
Query: 89 CSCPPGYTGDPLTQCRRFDPQELCDRSPC---GVNTRC-EVINMVPTCSCLPGYTGSPLS 144
C C P + G C + G C + +C C GY+
Sbjct: 70 CFCLPAFEG---RNCET-HKDD-QLICVNENGGCEQYCSDHTGTKRSCRCHEGYSLLA-- 122
Query: 145 GCRHECDSDYDCGPSQSCVNYKCANPCASGAC 176
C PC
Sbjct: 123 -DGVSCT---PTVE----------YPCGKIPI 140
>3nkq_A Ectonucleotide pyrophosphatase/phosphodiesterase member 2;
lysophospholipase D, autotaxin, ENPP2, lysophosphatidic
acid hydrolase; HET: NAG BMA MAN NKQ; 1.70A {Mus
musculus} PDB: 3nkm_A* 3nkn_A* 3nkp_A* 3nko_A* 3nkr_A*
2xrg_A* 2xr9_A*
Length = 831
Score = 32.2 bits (72), Expect = 0.30
Identities = 26/160 (16%), Positives = 42/160 (26%), Gaps = 14/160 (8%)
Query: 130 PTCSCLPGYTGSPLSGCRHECDSDYDCGPSQSCVNYKCANPCAS-GACAP--TAQCEVRN 186
PT +T + S C+ C + GP C +C N C S +C C
Sbjct: 8 PTVLSDSPWTNTSGS-CKGRCFELQEVGPP-DC---RCDNLCKSYSSCCHDFDELCLKTA 62
Query: 187 HRAVCS---CPVGYLGDPYTSCRAECLAHSDCPTDRPSCLGNKC---MNPCAGQCGINAK 240
C+ C + C +CL+ DC T+ + + C
Sbjct: 63 RGWECTKDRCGEVRNEENACHCSEDCLSRGDCCTNYQVVCKGESHWVDDDCEEIRVPECP 122
Query: 241 CEVRGATPICSCPRDMTGDPFVRCRPFDKYVAPLINDYLK 280
I + + L +
Sbjct: 123 AGFVRPPLIIFSVDGFRASYMKKGSKVMPNIEKLRSCGTH 162
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 31.6 bits (71), Expect = 0.58
Identities = 16/67 (23%), Positives = 24/67 (35%), Gaps = 7/67 (10%)
Query: 244 RGATPICSCPRDMTGDPFVR---CRPFDKYVAPLINDYLKIYWRYQNNKTIFYVSLVSLN 300
RG T + PRD G P + A + L+ +T + V +V+ N
Sbjct: 1789 RGMTMQVAVPRDELGRSNYGMIAINP-GRVAASFSQEALQYVVERVGKRTGWLVEIVNYN 1847
Query: 301 YP---YV 304
YV
Sbjct: 1848 VENQQYV 1854
>3nxp_A Prethrombin-1; allostery, blood coagulation, hydro kringle, serine
protease, zymogen; HET: NAG; 2.20A {Homo sapiens}
Length = 424
Score = 31.0 bits (70), Expect = 0.59
Identities = 10/112 (8%), Positives = 19/112 (16%), Gaps = 6/112 (5%)
Query: 148 HECDSDYDCGPSQSCVNYKCANP------CASGACAPTAQCEVRNHRAVCSCPVGYLGDP 201
D + V C NP + GD
Sbjct: 45 KALSKHQDFNSAVQLVENFCRNPDGDEEGVWCYVAGKPGDFGYCDLNYCEEAVEEETGDG 104
Query: 202 YTSCRAECLAHSDCPTDRPSCLGNKCMNPCAGQCGINAKCEVRGATPICSCP 253
+ + ++ + CG+ E +
Sbjct: 105 LDEDSDRAIEGATATSEYQTFFNPATFGSGEADCGLRPLFEKKSLEDKTERE 156
Score = 27.9 bits (62), Expect = 5.1
Identities = 12/136 (8%), Positives = 26/136 (19%), Gaps = 28/136 (20%)
Query: 4 YMGGDPCSPNPCGSNTQCNVASNRPVCSCLPGHWGNPLTYCQRGECQDHSDCSHSKACKE 63
+ N C + V L YC+ ++ D + +
Sbjct: 53 FNSAVQLVENFCRNPDGDEEGVWCYVAGKPGDFGYCDLNYCEEAVEEETGDGLDEDSDRA 112
Query: 64 YRCVDVCAGQCGVNSECNVRNHIPVCSCPPGYTGDPLTQCRRFDPQELCDRSPCGVNTRC 123
+ +P T + CG+
Sbjct: 113 IEGA--------------------TATSEYQTFFNPATFG--------SGEADCGLRPLF 144
Query: 124 EVINMVPTCSCLPGYT 139
E ++ +
Sbjct: 145 EKKSLEDKTERELLES 160
>2hr7_A Insulin receptor; hormone receptor, leucine rich repeat,
transferase; HET: NAG BMA MAN FUC P33; 2.32A {Homo
sapiens}
Length = 486
Score = 31.0 bits (69), Expect = 0.62
Identities = 28/216 (12%), Positives = 47/216 (21%), Gaps = 12/216 (5%)
Query: 53 SDCSHSKACKEYRCVDVCAGQCGVNSECNVRNHIPVCSCPPGYTGDPLTQCRRFDPQELC 112
+ + C C ++ V + + C++ P C
Sbjct: 138 DSVEDNHIVLNKDDNEECGDICPGTAKGKTNCPATVINGQFVERCWTHSHCQKVCPTI-C 196
Query: 113 DRSPCGVNTRCEVINMVPTCS-------CLPGYTGSPLSGCRHECDSDYDCGPSQSCVNY 165
C C + CS C+ C C Y CVN+
Sbjct: 197 KSHGCTAEGLCCHSECLGNCSQPDDPTKCVACRNFYLDGRCVETCPPPYYHFQDWRCVNF 256
Query: 166 ----KCANPCASGACAPTAQCEVRNHRAVCSCPVGYLGDPYTSCRAECLAHSDCPTDRPS 221
+ C + Q + N++ + CP GY + CL
Sbjct: 257 SFCQDLHHKCKNSRRQGCHQYVIHNNKCIPECPSGYTMNSSNLLCTPCLGPCPKVCHLLE 316
Query: 222 CLGNKCMNPCAGQCGINAKCEVRGATPICSCPRDMT 257
A + I
Sbjct: 317 GEKTIDSVTSAQELRGCTVINGSLIINIRGGNNLAA 352
>2vj2_A Jagged-1; signalling, polymorphism, glycoprotein, extracellular,
developmental protein, notch signaling pathway, EGF,
DSL, notch, calcium, membrane; 2.50A {Homo sapiens} PDB:
2kb9_A
Length = 169
Score = 30.0 bits (68), Expect = 0.63
Identities = 28/145 (19%), Positives = 36/145 (24%), Gaps = 24/145 (16%)
Query: 8 DPCSPNPCGSNTQCNVASNRPVCSCLPGHWGNPLTYCQRGECQDHSDCSHSKACKEYRCV 67
C P + +C+ G G C R C+ H C
Sbjct: 32 KFCRPRDDFFGHYACDQNGN--KTCMEGWMG---PECNRAICRQGCSPKHGSCKLPGDCR 86
Query: 68 ----------DVCA-GQCGVNSECNVRNHIPVCSCPPGYTGDPLTQCRRFDPQELCDRSP 116
D C V+ CN C C + G + D P
Sbjct: 87 CQYGWQGLYCDKCIPHPGCVHGICNEPWQ---CLCETNWGGQLCDK----DLNYCGTHQP 139
Query: 117 CGVNTRCEVINM-VPTCSCLPGYTG 140
C C CSC GY+G
Sbjct: 140 CLNGGTCSNTGPDKYQCSCPEGYSG 164
Score = 28.9 bits (65), Expect = 1.6
Identities = 23/167 (13%), Positives = 38/167 (22%), Gaps = 32/167 (19%)
Query: 10 CSPNPCGSNTQCNVASNRPVCSCLPGHWGNPLTYCQRGECQDHSDCSHSKACKEYRCV-- 67
+ + R +C ++G C + H +
Sbjct: 2 RGSHHHHHHGSIE---GRSAVTCDDYYYG---FGCNKFCRPRDDFFGHYACDQNGNKTCM 55
Query: 68 ----------DVCAGQCGVNSECNVRNHIPVCSCPPGYTGDPLTQCRRFDPQELCDRSPC 117
+C C C C G+ G C + C P
Sbjct: 56 EGWMGPECNRAICRQGCSPKHGSCKLP--GDCRCQYGWQG---LYC------DKCIPHPG 104
Query: 118 GVNTRCEVINMVPTCSCLPGYTGSPLSGCRHECDSDYDCGPSQSCVN 164
V+ C C C + G + C + C +C N
Sbjct: 105 CVHGICNEPW---QCLCETNWGGQLCDKDLNYCGTHQPCLNGGTCSN 148
>2e26_A Reelin, reeler protein; signaling protein; HET: NAG BMA; 2.00A {Mus
musculus} PDB: 3a7q_A*
Length = 725
Score = 31.2 bits (69), Expect = 0.65
Identities = 17/103 (16%), Positives = 28/103 (27%), Gaps = 4/103 (3%)
Query: 46 RGECQDHSDCSHSKACKEYRCVDVCAGQCGVNSECNVRNHIPVCSCPPGYTGDPLTQCRR 105
R D + A D C C + C + C C + G +
Sbjct: 513 RWHQPAPFDKQQTWAIDNVYIGDGCLDMCSGHGRCVQGS----CVCDEQWGGLYCDEPET 568
Query: 106 FDPQELCDRSPCGVNTRCEVINMVPTCSCLPGYTGSPLSGCRH 148
P +L D + + + S + G S L+
Sbjct: 569 SLPTQLKDNFNRAPSNQNWLTVSGGKLSTVCGAVASGLALHFS 611
Score = 27.7 bits (60), Expect = 8.2
Identities = 29/198 (14%), Positives = 54/198 (27%), Gaps = 15/198 (7%)
Query: 74 CGVNSECNVRNHIPVCSCPPGYTGDPLTQCRRFDPQELCDRSPCGVNTRCEVINMVPTCS 133
C V C S G + PL + E +
Sbjct: 442 CSVTDSCY--AIELEYSVDLGLSWHPLVRDCLPTNVECSRYHLQRILVSDTFNKWTRITL 499
Query: 134 CLPGYTGSPLSGCRHECDSDYDCGPSQSCVNYKCANPCASGACAPTAQCEVRNHRAVCSC 193
LP YT S + R + +D + + N + C C+ +C + C C
Sbjct: 500 PLPSYTRSQATRFRWHQPAPFDKQQTWAIDNVYIGDGCLDM-CSGHGRCV----QGSCVC 554
Query: 194 PVGYLGD-------PYTSCRAECLAHSDCPTDRPSCLGNKCMNPCAGQCGINAKCEVRGA 246
+ G + + + + + G K C A G
Sbjct: 555 DEQWGGLYCDEPETSLPTQLKDNFNRAPSNQNWLTVSGGKLSTVCGAVASGLALHFSGGC 614
Query: 247 TPIC-SCPRDMTGDPFVR 263
+ + + ++T F++
Sbjct: 615 SRLLVTVDLNLTNAEFIQ 632
>2f83_A Coagulation factor XI; protease, apple domain, hydrolase; HET: NAG;
2.87A {Homo sapiens} PDB: 2j8j_A 2j8l_A
Length = 625
Score = 30.6 bits (69), Expect = 0.92
Identities = 15/139 (10%), Positives = 28/139 (20%), Gaps = 5/139 (3%)
Query: 25 SNRPVCSCLPGHWGNPLTYCQRGECQDHSDCSHSKACKEYRCVDVCAGQCGVNSECNVRN 84
S R +C G P T ++ + + C
Sbjct: 250 SQRNLCLLKTSESGLPSTRIKKSKALSGFSLQSCRHSIPVFCHSSFYHD---TDFLGEEL 306
Query: 85 HIPVCSCPPGY--TGDPLTQCRRFDPQELCDRSPCGVNTRCEVINMVPTCSCLPGYTGSP 142
I +C+ F G ++ + + + G
Sbjct: 307 DIVAAKSHEACQKLCTNAVRCQFFTYTPAQASCNEGKGKCYLKLSSNGSPTKILHGRGGI 366
Query: 143 LSGCRHECDSDYDCGPSQS 161
C D +C
Sbjct: 367 SGYTLRLCKMDNECTTKIK 385
Score = 29.8 bits (67), Expect = 1.7
Identities = 10/142 (7%), Positives = 27/142 (19%), Gaps = 18/142 (12%)
Query: 4 YMGGDPCSPNPCGSNTQCNVASNRPVCSCLPGHWGNPLTYCQRGECQDHSDCSHSKACKE 63
+ + S + C + + GE D
Sbjct: 263 GLPSTRIKKSKALSGFSLQSCRHSIPVFCHSSFYHDT---DFLGEELDIVAAK------- 312
Query: 64 YRCVDVCAGQCGVNSECNVRNHIPVCSCPPGYTGDPLTQCRRFDPQELCDRSPCGVNTRC 123
+ C C C + + + +C + ++ R
Sbjct: 313 --SHEACQKLCTNAVRCQFFTY----TPAQASCNEGKGKC--YLKLSSNGSPTKILHGRG 364
Query: 124 EVINMVPTCSCLPGYTGSPLSG 145
+ + + +
Sbjct: 365 GISGYTLRLCKMDNECTTKIKP 386
>3zyj_B Netrin-G1; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo
sapiens}
Length = 426
Score = 30.2 bits (67), Expect = 1.0
Identities = 23/194 (11%), Positives = 40/194 (20%), Gaps = 11/194 (5%)
Query: 8 DPCSPNPCGSNTQCNVASNRPVCSCLPGHWGNPLTYCQRGECQDHSDCSHSKACKEYRCV 67
P N Q + + L D + V
Sbjct: 234 GPRLRNMASLYGQLDTTKKLRDFFTVTDLRIRLLRPAVGEIFVDELHLARYFYAISDIKV 293
Query: 68 DVCAGQCGVNSECNVRNHIPVCSCPPGYTGDPLTQCRRFDPQELCDRSPCGVNTRCEVIN 127
+ C N C C TG +C++ +
Sbjct: 294 RGRCKCNLHATVCVYDNSKLTCECEHNTTGPDCGKCKKNYQGRPWSPGSYLPIPKGA--- 350
Query: 128 MVPTCSCLPGYTGSPLSGCRHECDSDYDCGPSQSCVNYKCA-----NPCASGACAPTAQC 182
+C+P + + C +E + G + V C C C C
Sbjct: 351 ---ANACIPSISSIGTNVCDNELLHCQNGGTCHNNVRCLCPAAYTGILCEKLRCEEAGSC 407
Query: 183 EVRNHRAVCSCPVG 196
+ +
Sbjct: 408 GSDSGQGAPPHGTH 421
Score = 29.0 bits (64), Expect = 2.6
Identities = 19/102 (18%), Positives = 29/102 (28%), Gaps = 8/102 (7%)
Query: 7 GDPCSPNPCGSNTQCNVASNRPVC-SCLPGHWGNPLTYCQRGECQDHSDCSHSKACKEYR 65
C + +C + P C C + G P G + AC
Sbjct: 303 ATVCVYDNSKLTCECEHNTTGPDCGKCKKNYQGRP---WSPGSYLPIPKG-AANACIPSI 358
Query: 66 CV---DVCAGQCGVNSECNVRNHIPVCSCPPGYTGDPLTQCR 104
+VC + ++ C CP YTG + R
Sbjct: 359 SSIGTNVCDNELLHCQNGGTCHNNVRCLCPAAYTGILCEKLR 400
>4aqs_A Laminin subunit beta-1; cell adhesion; HET: NAG BMA MAN FUL; 3.11A
{Mus musculus}
Length = 525
Score = 30.4 bits (68), Expect = 1.1
Identities = 24/149 (16%), Positives = 37/149 (24%), Gaps = 15/149 (10%)
Query: 6 GGDPCSPNPCGSNTQCNVASNRPVCSCLPGHWGNPLTYCQRGECQDHS-DCSHSKACKEY 64
C + NV+ +C G C+ Q D C+
Sbjct: 323 HSSSCHFDMAVFLATGNVSGGV-CDNCQHNTMGRNCEQCKPFYFQHPERDIRDPNLCEPC 381
Query: 65 RC---VDVCAGQCGVNSECNVRNHIPVCSCPPGYTGDPLTQCR----RFDPQELCDRSPC 117
C G C ++ +V C C G+ C+ ++ C
Sbjct: 382 TCDPAGSENGGICDGYTDFSVGLIAGQCRCKLHVEGERCDVCKEGFYDLSAEDPYGCKSC 441
Query: 118 GVNTRCEVINMVP------TCSCLPGYTG 140
N + P C C TG
Sbjct: 442 ACNPLGTIPGGNPCDSETGYCYCKRLVTG 470
>1emn_A Fibrillin; extracellular matrix, calcium-binding, glycoprotein,
repeat, signal, multigene family, disease mutation,
matrix protein; NMR {Homo sapiens} SCOP: g.3.11.1
g.3.11.1 PDB: 1emo_A
Length = 82
Score = 27.9 bits (63), Expect = 1.3
Identities = 16/60 (26%), Positives = 22/60 (36%), Gaps = 8/60 (13%)
Query: 89 CSCPPGYTGDPLTQCRRFDPQELCDRSPCGVNTRCEVINMVP--TCSCLPGYTGSPLSGC 146
C CP GY +C D C N C N++ C+C G+ P+ C
Sbjct: 28 CECPFGYILAG-NECVDTDE---CSVGNPCGNGTC--KNVIGGFECTCEEGFEPGPMMTC 81
Score = 25.6 bits (57), Expect = 8.4
Identities = 20/97 (20%), Positives = 27/97 (27%), Gaps = 26/97 (26%)
Query: 10 CSPNPCGSNTQCNVASNRP---VCSCLPGHWGNPLTYCQRGECQDHSDCSHSKACKEYRC 66
C + QC N C C G+ C D +CS C C
Sbjct: 8 CKEPDVCKHGQCI---NTDGSYRCECPFGYILAGNE------CVDTDECSVGNPCGNGTC 58
Query: 67 VDVCAGQCGVNSECNVRNHIPVCSCPPGYTGDPLTQC 103
+V G C+C G+ P+ C
Sbjct: 59 KNVIGGF--------------ECTCEEGFEPGPMMTC 81
>2b9l_A Prophenoloxidase activating factor; CLIP domain, easter, innate
immunity, melanin, immune system binding complex; HET:
NAG FUC; 2.00A {Holotrichia diomphalia}
Length = 394
Score = 29.8 bits (67), Expect = 1.7
Identities = 15/112 (13%), Positives = 26/112 (23%), Gaps = 18/112 (16%)
Query: 11 SPNPCGSNTQ---CNVASNRPVCSCLPGHWGNPLTYCQRGECQDHSDCSHSKACKEYRCV 67
+ P G+ T C +++ C+ C ++ E
Sbjct: 24 TKAPLGALTALPRCGTGADQGKKVCIV-----------YHRCDGVTNTV----TPEEVIN 68
Query: 68 DVCAGQCGVNSECNVRNHIPVCSCPPGYTGDPLTQCRRFDPQELCDRSPCGV 119
G + N C G T + S CG+
Sbjct: 69 TTGEGIFDIRENANECESYLDVCCGLPEGGVLPTPSPTPPVVPVLKPSFCGI 120
>1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller,
lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1
g.3.11.1
Length = 316
Score = 29.6 bits (66), Expect = 1.7
Identities = 9/36 (25%), Positives = 13/36 (36%)
Query: 162 CVNYKCANPCASGACAPTAQCEVRNHRAVCSCPVGY 197
C +N C P Q + + C+CP G
Sbjct: 270 CERTTLSNGGCQYLCLPAPQINPHSPKFTCACPDGM 305
Score = 28.1 bits (62), Expect = 5.2
Identities = 9/50 (18%), Positives = 12/50 (24%), Gaps = 1/50 (2%)
Query: 212 HSDCPTDRPSCLGNKCMN-PCAGQCGINAKCEVRGATPICSCPRDMTGDP 260
+ P C N C C + C+CP M
Sbjct: 260 NLTQPRGVNWCERTTLSNGGCQYLCLPAPQINPHSPKFTCACPDGMLLAR 309
>2dtg_E Insulin receptor; IR ectodomain, X-RAY crystallography, hormone
receptor/immune system complex; 3.80A {Homo sapiens}
SCOP: b.1.2.1 b.1.2.1 b.1.2.1 c.10.2.5 c.10.2.5 g.3.9.1
PDB: 3loh_E
Length = 897
Score = 29.5 bits (65), Expect = 2.0
Identities = 28/182 (15%), Positives = 39/182 (21%), Gaps = 27/182 (14%)
Query: 2 TYYMGGDPCSPNPCGSNTQCNVASNRPVCSCLPGHWGNPLTYCQRGE-CQD-------HS 53
++ + CG C + G + C CQ
Sbjct: 142 DNHIVLNKDDNEECGD--ICPGTAKGKTNCPATVINGQFVERCWTHSHCQKVCPTICKSH 199
Query: 54 DCSHSKACKEYRCVDVCAGQCGVNS--ECNVRNHIPVC--SCPPGYTGDPLTQCRRFDPQ 109
C+ C C+ C+ C C +CPP Y +C
Sbjct: 200 GCTAEGLCCHSECLGNCSQPDDPTKCVACRNFYLDGRCVETCPPPYYHFQDWRCV----- 254
Query: 110 ELCDRSPCGVNTRCEVINMVPTCSCLPGYTGSPLSGCRHECDSDYDCGPSQSCVNYKCAN 169
Y + C EC S Y S C
Sbjct: 255 ------NFSFCQDLHHKCKNSRRQGCHQYV-IHNNKCIPECPSGYTMNSSNLLCT-PCLG 306
Query: 170 PC 171
PC
Sbjct: 307 PC 308
Score = 28.3 bits (62), Expect = 4.9
Identities = 16/81 (19%), Positives = 26/81 (32%), Gaps = 2/81 (2%)
Query: 155 DCGPSQSCVNYKCANPCASGACAPTAQCEVRNHRAVCSCPVGYLGDPYTSCRAECLAHSD 214
D V K N C TA+ + V + ++ C+ C +
Sbjct: 138 DSVEDNHIVLNKDDNEECGDICPGTAKGKTNCPATVINGQFVERCWTHSHCQKVCP--TI 195
Query: 215 CPTDRPSCLGNKCMNPCAGQC 235
C + + G C + C G C
Sbjct: 196 CKSHGCTAEGLCCHSECLGNC 216
>2w86_A Fibrillin-1, fibrillin1; phosphoprotein, EGF-like domain, disease
mutation, craniosynostosis, extracellular matrix,
fibrillin calcium cbegf hybrid; 1.80A {Homo sapiens}
Length = 147
Score = 28.5 bits (64), Expect = 2.1
Identities = 12/83 (14%), Positives = 18/83 (21%), Gaps = 11/83 (13%)
Query: 131 TCSCLPGYTGSPLSGCRHECDSDYDCGPSQSCVNYKCANPCASGACAPT--------AQC 182
C C T P + C Q+ ++ +C
Sbjct: 25 ICECSSESTLDP---TKTICIETIKGTCWQTVIDGRCEININGATLKSQCCSSLGAAWGS 81
Query: 183 EVRNHRAVCSCPVGYLGDPYTSC 205
+ C GY T C
Sbjct: 82 PCTLCQVDPICGKGYSRIKGTQC 104
Score = 27.3 bits (61), Expect = 5.5
Identities = 28/144 (19%), Positives = 40/144 (27%), Gaps = 16/144 (11%)
Query: 8 DPCSPNPCGSNTQCNVASNRPVCSCLPGHWGNPLTYCQRGECQDHSDCSHSKACKEYRCV 67
D C +PC N C + +C C +P + C + + + + RC
Sbjct: 5 DECESSPCI-NGVCKNSPGSFICECSSESTLDP----TKTICIETIKGTCWQTVIDGRCE 59
Query: 68 DVCAGQCGVNSECNVRNHIP---------VCSCPPGYTGDPLTQCRRFDPQELCDRSPCG 118
G + C+ C GY+ TQC D E
Sbjct: 60 ININGATLKSQCCSSLGAAWGSPCTLCQVDPICGKGYSRIKGTQCEDID--ECEVFPGVC 117
Query: 119 VNTRCEVINMVPTCSCLPGYTGSP 142
N C C C G T
Sbjct: 118 KNGLCVNTRGSFKCQCPSGMTLDA 141
>1zjk_A Mannan-binding lectin serine protease 2; beta barrel, modular
protein, hydrolase; 2.18A {Homo sapiens} SCOP: b.47.1.2
g.18.1.1 g.18.1.1 PDB: 1q3x_A
Length = 403
Score = 29.0 bits (65), Expect = 3.0
Identities = 16/86 (18%), Positives = 21/86 (24%), Gaps = 4/86 (4%)
Query: 170 PCASGACAPTAQCEVRNHRAVCSCPVGYL----GDPYTSCRAECLAHSDCPTDRPSCLGN 225
+G +P + C GY P S A C P+C
Sbjct: 22 APPNGHVSPVQAKYILKDSFSIFCETGYELLQGHLPLKSFTAVCQKDGSWDRPMPACSIV 81
Query: 226 KCMNPCAGQCGINAKCEVRGATPICS 251
C P G G T +
Sbjct: 82 DCGPPDDLPSGRVEYITGPGVTTYKA 107
>2xxl_A GRAM-positive specific serine protease, isoform B; hydrolase,
innate immunity; HET: NAG FUC BMA; 1.80A {Drosophila
melanogaster}
Length = 408
Score = 28.3 bits (63), Expect = 4.1
Identities = 19/94 (20%), Positives = 29/94 (30%), Gaps = 7/94 (7%)
Query: 68 DVCAGQCGVNSECNVRNHIPVCSCPPGYTGDPLTQCRRFDPQELCDRSPCGVNTRCEVIN 127
D C G +C +P SC + LT+ ++ + D + C N
Sbjct: 30 DDCTTPDGDQGQC-----MPFSSCRTIE--ERLTEAQKAGQKVPADYASYLQKALCGEFN 82
Query: 128 MVPTCSCLPGYTGSPLSGCRHECDSDYDCGPSQS 161
V C D ++DCG S
Sbjct: 83 GVRHFCCPSANIQHNSKVMSLFKDENFDCGNFLS 116
>1n1i_A Merozoite surface protein-1; MSP1, malaria, surface antigen,
glycoprotein, EGF domain, cell adhesion; HET: HIS; 2.40A
{Plasmodium knowlesi strain H} SCOP: g.3.11.4 g.3.11.4
Length = 105
Score = 27.0 bits (59), Expect = 4.2
Identities = 14/66 (21%), Positives = 17/66 (25%), Gaps = 12/66 (18%)
Query: 308 PDDLCEPNPCGENAKCQPGYDKSGKDRPVCTCLPGYVGDALTYC--------RRGECQSD 359
C ENA C + CL G+ G C +
Sbjct: 9 SAHKCIDTNVPENAACY----RYLDGTEEWRCLLGFKEVGGKCVPASITCEENNGGCAPE 64
Query: 360 AECNYD 365
AEC D
Sbjct: 65 AECTMD 70
>1n7d_A LDL receptor, low-density lipoprotein receptor; familial
hypercholesterolemia, cholestero metabolism, lipid
transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens}
SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1
g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A
1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A
Length = 699
Score = 28.2 bits (62), Expect = 4.7
Identities = 39/276 (14%), Positives = 61/276 (22%), Gaps = 19/276 (6%)
Query: 10 CSPNPCGSNTQCNVASNRPVCSCLPGH-WGNPLTYCQRGE--CQDHSDCSHSKACKEYRC 66
C ++ C S+ C + + + C E C S C
Sbjct: 141 PQLWACDNDPDCEDGSDEWPQRCRGLYVFQGDSSPCSAFEFHCLSGECIHSSWRC---DG 197
Query: 67 VDVCAGQCGVNSECNVRNHIPVCSCPPGYTGDPLTQC-RRFDPQELCDRSPCGVNTRCEV 125
C + + C G QC R +D +++ D C T CE
Sbjct: 198 GPDCKDKSDEENCAVATCRPDEFQCSDGNCIHGSRQCDREYDCKDMSDEVGCVNVTLCEG 257
Query: 126 INMV--PTCSCLPGYTGSPLSGCRHECDSDYDCGPSQSCVNYKCA-NPCASGACAPTAQC 182
N + C+ C+ DC +C N C + C
Sbjct: 258 PNKFKCHSGECITLD---------KVCNMARDCRDWSDEPIKECGTNECLDNNGGCSHVC 308
Query: 183 EVRNHRAVCSCPVGYLGDPYTSCRAECLAHSDCPTDRPSCLGNKCMNPCAGQCGINAKCE 242
C CP G+ C + +
Sbjct: 309 NDLKIGYECLCPDGFQLVAQRRCEDIDECQDPDTCSQLCVNLEGGYKCQCEEGFQLDPHT 368
Query: 243 VRGATPICSCPRDMTGDPFVRCRPFDKYVAPLINDY 278
T VR D+ +
Sbjct: 369 KACKAVGSIAYLFFTNRHEVRKMTLDRSEYTSLIPN 404
>1tpg_A T-plasminogen activator F1-G; plasminogen activation; NMR {Homo
sapiens} SCOP: g.3.11.1 g.27.1.1 PDB: 1tpm_A 1tpn_A
Length = 91
Score = 26.7 bits (59), Expect = 4.8
Identities = 10/54 (18%), Positives = 12/54 (22%), Gaps = 8/54 (14%)
Query: 89 CSCPPGYTGDPLTQCRRFDPQELCDRSPCGVNTRCEVINMVP--TCSCLPGYTG 140
C C G C C C+ C C G+ G
Sbjct: 34 CWCNSGRAQ---CHSVPVKS---CSEPRCFNGGTCQQALYFSDFVCQCPEGFAG 81
>3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex,
beta propeller, cholesterol clearance, PCSK
autocatalytic cleavage; 7.01A {Homo sapiens}
Length = 791
Score = 27.9 bits (61), Expect = 7.2
Identities = 28/172 (16%), Positives = 48/172 (27%), Gaps = 4/172 (2%)
Query: 26 NRPVCSCLPGHWGNPLTYCQRGECQDHSDCSHSKACKEYRCVDVCAGQCGVNSECNVRNH 85
N V +C P + C G Q + E CV+V + +C+
Sbjct: 227 NCAVATCRPDEFQCSDGNCIHGSRQCDREYDCKDMSDEVGCVNVTLCEGPNKFKCHSGEC 286
Query: 86 IPVCSCPPGYT--GDPLTQCRRFDPQELCDRSPCGVNTRCEVINMVPTCSCLPGYTGSPL 143
I + D + + C + G + C + + C C G+
Sbjct: 287 ITLDKVCNMARDCRDWSDEPIKECGTNECLDNNGGCSHVCNDLKIGYECLCPDGFQLVAQ 346
Query: 144 SGCRHECDSDYDCGPSQSCVNYKCAN--PCASGACAPTAQCEVRNHRAVCSC 193
C + SQ CVN + C G + ++
Sbjct: 347 RRCEDIDECQDPDTCSQLCVNLEGGYKCQCEEGFQLDPHTKACKAVGSIAYL 398
>1lmj_A Fibrillin 1; EGF, calcium, microfibril, neonatal, marfan syndrome,
connective tissue, extracellular matrix, structural
protein; NMR {Homo sapiens} SCOP: g.3.11.1 g.3.11.1
Length = 86
Score = 25.7 bits (57), Expect = 8.0
Identities = 11/45 (24%), Positives = 13/45 (28%), Gaps = 8/45 (17%)
Query: 131 TCSCLPGYTGSPLSGCR----HECDSDYDCGPSQSCVN----YKC 167
C C GY + EC D C N Y+C
Sbjct: 26 ECKCDEGYESGFMMMKNCMDIDECQRDPLLCRGGVCHNTEGSYRC 70
>1zro_A Erythrocyte binding antigen region II; EBA-175, RII, DBL, invasion,
HOST, malaria, disease, glycophorin, glycan, sialic
acid; HET: SO4; 2.25A {Plasmodium falciparum} SCOP:
a.264.1.1 a.264.1.1 PDB: 1zrl_A*
Length = 602
Score = 27.2 bits (60), Expect = 9.2
Identities = 15/161 (9%), Positives = 33/161 (20%), Gaps = 12/161 (7%)
Query: 29 VCSCLPGHWGNPLTYCQRGECQDHSDCSHSKACKEYR-CVDVCAGQCGVNSECNVRNHIP 87
P + C+ + + C +YR + + S+
Sbjct: 187 FLLERDNRAKLPKSKCKNNALYEACEKECIDPCMKYRDWIIRSKFEWHTLSK-EYETQKV 245
Query: 88 VCSCPPGYTGDPLTQCRRFDPQELCDRSPCGVNTRCEVINMVPTCSCLPGYTGSPLSGCR 147
Y L + + C+ + + + + R
Sbjct: 246 PKENAENYLIKISENKNDAKVSLLLNNCDAEYSKYCDCKHTTTLVKSVLNGNDNTIKEKR 305
Query: 148 H----------ECDSDYDCGPSQSCVNYKCANPCASGACAP 178
CD + ++ K C P
Sbjct: 306 EHIDLDDFSKFGCDKNSVDTNTKVWECKKPYKLSTKDVCVP 346
>2c8i_E CD55, complement decay-accelerating factor; picornavirus, DAF,
virus-receptor complex, antigen, blood group antigen,
complement pathway, GPI-anchor; 14.00A {Homo sapiens}
SCOP: g.18.1.1 g.18.1.1 g.18.1.1 g.18.1.1
Length = 316
Score = 27.2 bits (60), Expect = 9.7
Identities = 20/105 (19%), Positives = 26/105 (24%), Gaps = 5/105 (4%)
Query: 131 TCSCLPGYTGSPLSGCRHECDSDYDCGPSQSCVNYKCANPC-----ASGACAPTAQCEVR 185
T C + P C + N C P + T
Sbjct: 93 TYKCEESFVKIPGEKDSVICLKGSQWSDIEEFCNRSCEVPTRLNSASLKQPYITQNYFPV 152
Query: 186 NHRAVCSCPVGYLGDPYTSCRAECLAHSDCPTDRPSCLGNKCMNP 230
C GY +P S + CL + T C C NP
Sbjct: 153 GTVVEYECRPGYRREPSLSPKLTCLQNLKWSTAVEFCKKKSCPNP 197
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.322 0.139 0.502
Gapped
Lambda K H
0.267 0.0564 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 5,759,066
Number of extensions: 359719
Number of successful extensions: 2990
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1791
Number of HSP's successfully gapped: 786
Length of query: 365
Length of database: 6,701,793
Length adjustment: 95
Effective length of query: 270
Effective length of database: 4,049,298
Effective search space: 1093310460
Effective search space used: 1093310460
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 58 (26.5 bits)