RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy15668
(365 letters)
>d1haea_ g.3.11.1 (A:) Heregulin-alpha, EGF-like domain {Human (Homo
sapiens) [TaxId: 9606]}
Length = 63
Score = 28.4 bits (63), Expect = 0.23
Identities = 11/37 (29%), Positives = 14/37 (37%)
Query: 310 DLCEPNPCGENAKCQPGYDKSGKDRPVCTCLPGYVGD 346
E C +C D S R +C C PG+ G
Sbjct: 7 AEKEKTFCVNGGECFMVKDLSNPSRYLCKCQPGFTGA 43
>d1edmb_ g.3.11.1 (B:) Factor IX (IXa) {Human (Homo sapiens)
[TaxId: 9606]}
Length = 39
Score = 27.3 bits (61), Expect = 0.33
Identities = 11/31 (35%), Positives = 12/31 (38%)
Query: 8 DPCSPNPCGSNTQCNVASNRPVCSCLPGHWG 38
D C NPC + C N C C G G
Sbjct: 4 DQCESNPCLNGGSCKDDINSYECWCPFGFEG 34
Score = 23.9 bits (52), Expect = 5.9
Identities = 11/37 (29%), Positives = 14/37 (37%), Gaps = 5/37 (13%)
Query: 310 DLCEPNPCGENAKCQPGYDKSGKDRPVCTCLPGYVGD 346
D CE NPC C+ + C C G+ G
Sbjct: 4 DQCESNPCLNGGSCKDDI-----NSYECWCPFGFEGK 35
Score = 23.5 bits (51), Expect = 6.7
Identities = 9/32 (28%), Positives = 13/32 (40%)
Query: 169 NPCASGACAPTAQCEVRNHRAVCSCPVGYLGD 200
+ C S C C+ + C CP G+ G
Sbjct: 4 DQCESNPCLNGGSCKDDINSYECWCPFGFEGK 35
Score = 23.1 bits (50), Expect = 8.9
Identities = 8/29 (27%), Positives = 12/29 (41%)
Query: 112 CDRSPCGVNTRCEVINMVPTCSCLPGYTG 140
C+ +PC C+ C C G+ G
Sbjct: 6 CESNPCLNGGSCKDDINSYECWCPFGFEG 34
>d2vj3a2 g.3.11.1 (A:453-491) Neurogenic locus notch homolog
protein 1, Notch1 {Human (Homo sapiens) [TaxId: 9606]}
Length = 39
Score = 26.6 bits (59), Expect = 0.62
Identities = 10/31 (32%), Positives = 15/31 (48%)
Query: 8 DPCSPNPCGSNTQCNVASNRPVCSCLPGHWG 38
+ C NPC ++ C C C+PG+ G
Sbjct: 2 NECVSNPCQNDATCLDQIGEFQCICMPGYEG 32
Score = 23.1 bits (50), Expect = 8.6
Identities = 12/37 (32%), Positives = 15/37 (40%), Gaps = 5/37 (13%)
Query: 310 DLCEPNPCGENAKCQPGYDKSGKDRPVCTCLPGYVGD 346
+ C NPC +A C C C+PGY G
Sbjct: 2 NECVSNPCQNDATCLDQI-----GEFQCICMPGYEGV 33
>d1g1ta2 g.3.11.1 (A:119-157) E-selectin, EGF-domain {Human (Homo
sapiens) [TaxId: 9606]}
Length = 39
Score = 26.3 bits (58), Expect = 0.74
Identities = 9/31 (29%), Positives = 12/31 (38%)
Query: 8 DPCSPNPCGSNTQCNVASNRPVCSCLPGHWG 38
C+ C + +C N C C PG G
Sbjct: 2 AACTNTSCSGHGECVETINNYTCKCDPGFSG 32
>d2c4fl1 g.3.11.1 (L:46-82) Factor IX (IXa) {Pig (Sus scrofa)
[TaxId: 9823]}
Length = 37
Score = 26.2 bits (58), Expect = 0.76
Identities = 11/32 (34%), Positives = 15/32 (46%)
Query: 7 GDPCSPNPCGSNTQCNVASNRPVCSCLPGHWG 38
GD C+ +PC + C +C CLP G
Sbjct: 2 GDQCASSPCQNGGSCKDQLQSYICFCLPAFEG 33
>d1xkba1 g.3.11.1 (A:48-86) Factor X, N-terminal module {Human
(Homo sapiens) [TaxId: 9606]}
Length = 39
Score = 26.2 bits (58), Expect = 0.77
Identities = 10/31 (32%), Positives = 14/31 (45%)
Query: 8 DPCSPNPCGSNTQCNVASNRPVCSCLPGHWG 38
D C +PC + +C C+CL G G
Sbjct: 1 DQCETSPCQNQGKCKDGLGEYTCTCLEGFEG 31
Score = 23.1 bits (50), Expect = 9.2
Identities = 14/37 (37%), Positives = 17/37 (45%), Gaps = 5/37 (13%)
Query: 310 DLCEPNPCGENAKCQPGYDKSGKDRPVCTCLPGYVGD 346
D CE +PC KC+ G CTCL G+ G
Sbjct: 1 DQCETSPCQNQGKCKDGL-----GEYTCTCLEGFEGK 32
>d1g1sa2 g.3.11.1 (A:119-158) E-selectin, EGF-domain {Human (Homo
sapiens) [TaxId: 9606]}
Length = 40
Score = 25.5 bits (56), Expect = 1.3
Identities = 9/31 (29%), Positives = 11/31 (35%)
Query: 8 DPCSPNPCGSNTQCNVASNRPVCSCLPGHWG 38
C C +C CSC PG +G
Sbjct: 2 ASCQDMSCSKQGECLETIGNYTCSCYPGFYG 32
>d2vj3a3 g.3.11.1 (A:492-526) Neurogenic locus notch homolog
protein 1, Notch1 {Human (Homo sapiens) [TaxId: 9606]}
Length = 35
Score = 25.4 bits (56), Expect = 1.5
Identities = 11/31 (35%), Positives = 14/31 (45%)
Query: 8 DPCSPNPCGSNTQCNVASNRPVCSCLPGHWG 38
D C+ +PC N +C N C C G G
Sbjct: 1 DECASSPCLHNGRCLDKINEFQCECPTGFTG 31
>d1autl1 g.3.11.1 (L:49-96) Activated protein c (autoprothrombin
IIa) {Human (Homo sapiens) [TaxId: 9606]}
Length = 48
Score = 25.5 bits (56), Expect = 1.7
Identities = 9/39 (23%), Positives = 13/39 (33%), Gaps = 1/39 (2%)
Query: 102 QCRRFDPQELCDRSPCGVNTRCEVINMVPTCSCLPGYTG 140
QC + C C + C +C C G+ G
Sbjct: 1 QCLVLPLEHPCASLCC-GHGTCIDGIGSFSCDCRSGWEG 38
Score = 24.4 bits (53), Expect = 4.3
Identities = 9/38 (23%), Positives = 11/38 (28%)
Query: 61 CKEYRCVDVCAGQCGVNSECNVRNHIPVCSCPPGYTGD 98
C CA C + C C C G+ G
Sbjct: 2 CLVLPLEHPCASLCCGHGTCIDGIGSFSCDCRSGWEGR 39
>d1i0ua2 g.3.11.1 (A:42-82) Low density lipoprotein (LDL)
receptor, different EGF domains {Human (Homo sapiens)
[TaxId: 9606]}
Length = 41
Score = 23.2 bits (50), Expect = 8.8
Identities = 8/33 (24%), Positives = 11/33 (33%)
Query: 67 VDVCAGQCGVNSECNVRNHIPVCSCPPGYTGDP 99
+D C + C C C G+ DP
Sbjct: 1 IDECQDPDTCSQLCVNLEGGYKCQCEEGFQLDP 33
>d1q4ga2 g.3.11.1 (A:32-73) Prostaglandin H2 synthase-1, EGF-like
module {Sheep (Ovis aries) [TaxId: 9940]}
Length = 42
Score = 23.2 bits (50), Expect = 9.9
Identities = 8/31 (25%), Positives = 11/31 (35%), Gaps = 1/31 (3%)
Query: 8 DPCSPNPCGSNTQC-NVASNRPVCSCLPGHW 37
+PC PC C +R C C +
Sbjct: 3 NPCCYYPCQHQGICVRFGLDRYQCDCTRTGY 33
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.322 0.139 0.502
Gapped
Lambda K H
0.267 0.0589 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,540,255
Number of extensions: 86782
Number of successful extensions: 763
Number of sequences better than 10.0: 1
Number of HSP's gapped: 625
Number of HSP's successfully gapped: 303
Length of query: 365
Length of database: 2,407,596
Length adjustment: 87
Effective length of query: 278
Effective length of database: 1,213,086
Effective search space: 337237908
Effective search space used: 337237908
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 53 (24.5 bits)