BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy15669
(167 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2IQX|A Chain A, Rat Phosphatidylethanolamine-Binding Protein Containing
The S153e Mutation In The Complex With
O-Phosphorylethanolamine
pdb|2IQX|B Chain B, Rat Phosphatidylethanolamine-Binding Protein Containing
The S153e Mutation In The Complex With
O-Phosphorylethanolamine
pdb|2IQX|C Chain C, Rat Phosphatidylethanolamine-Binding Protein Containing
The S153e Mutation In The Complex With
O-Phosphorylethanolamine
Length = 187
Score = 123 bits (308), Expect = 6e-29, Method: Compositional matrix adjust.
Identities = 58/114 (50%), Positives = 78/114 (68%)
Query: 9 LIPDPDAPSRDNPTVKEWHHWLMGNIKGGDLEEADHLSRYIGAGPPKNTGLHRYVFLVYK 68
++ DPDAPSR +P +EWHH+L+ N+KG D+ LS Y+G+GPPK+TGLHRYV+LVY+
Sbjct: 67 VLTDPDAPSRKDPKFREWHHFLVVNMKGNDISSGTVLSEYVGSGPPKDTGLHRYVWLVYE 126
Query: 69 QPKFIVFTEHRLLDNSIYGRANFSIAEFAKKYDLGDPIAVNYFEAEYDDYVPTL 122
Q + + E L + S R F + EF KKY LG P+A F+AE+DD VP L
Sbjct: 127 QEQPLNCDEPILSNKSGDNRGKFKVEEFRKKYHLGAPVAGTCFQAEWDDSVPKL 180
>pdb|1KN3|A Chain A, Murine Pebp-2 (Phosphatidylethanolamine-Binding Protein-2)
Length = 183
Score = 121 bits (304), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 58/114 (50%), Positives = 76/114 (66%)
Query: 9 LIPDPDAPSRDNPTVKEWHHWLMGNIKGGDLEEADHLSRYIGAGPPKNTGLHRYVFLVYK 68
++ DPDAPSR P +EWHH+L+ N+KG D+ + LS Y+G+GPPK TGLHRYV+LVY+
Sbjct: 63 ILTDPDAPSRKKPVYREWHHFLVVNMKGNDISSGNVLSDYVGSGPPKGTGLHRYVWLVYQ 122
Query: 69 QPKFIVFTEHRLLDNSIYGRANFSIAEFAKKYDLGDPIAVNYFEAEYDDYVPTL 122
Q K + E L + S R F A F KKY LG P+A ++AE+D YVP L
Sbjct: 123 QDKPLRCDEPILTNRSGDHRGKFKTAAFRKKYHLGAPVAGTCYQAEWDSYVPKL 176
>pdb|2IQY|A Chain A, Rat Phosphatidylethanolamine-Binding Protein
Length = 190
Score = 121 bits (303), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 57/114 (50%), Positives = 77/114 (67%)
Query: 9 LIPDPDAPSRDNPTVKEWHHWLMGNIKGGDLEEADHLSRYIGAGPPKNTGLHRYVFLVYK 68
++ DPDAPSR +P +EWHH+L+ N+KG D+ LS Y+G+GPPK+TGLHRYV+LVY+
Sbjct: 70 VLTDPDAPSRKDPKFREWHHFLVVNMKGNDISSGTVLSEYVGSGPPKDTGLHRYVWLVYE 129
Query: 69 QPKFIVFTEHRLLDNSIYGRANFSIAEFAKKYDLGDPIAVNYFEAEYDDYVPTL 122
Q + + E L + S R F + F KKY LG P+A F+AE+DD VP L
Sbjct: 130 QEQPLNCDEPILSNKSGDNRGKFKVESFRKKYHLGAPVAGTCFQAEWDDSVPKL 183
>pdb|1A44|A Chain A, Phosphatidylethanolamine Binding Protein From Calf Brain
Length = 185
Score = 120 bits (302), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 57/114 (50%), Positives = 78/114 (68%)
Query: 9 LIPDPDAPSRDNPTVKEWHHWLMGNIKGGDLEEADHLSRYIGAGPPKNTGLHRYVFLVYK 68
++ DPDAPSR +P +EWHH+L+ N+KG ++ LS Y+G+GPPK TGLHRYV+LVY+
Sbjct: 66 VLTDPDAPSRKDPKYREWHHFLVVNMKGNNISSGTVLSDYVGSGPPKGTGLHRYVWLVYE 125
Query: 69 QPKFIVFTEHRLLDNSIYGRANFSIAEFAKKYDLGDPIAVNYFEAEYDDYVPTL 122
Q + E L + S R F +A F KKY+LG P+A ++AE+DDYVP L
Sbjct: 126 QEGPLKCDEPILSNRSGDHRGKFKVASFRKKYELGAPVAGTCYQAEWDDYVPKL 179
>pdb|1BD9|A Chain A, Human Phosphatidylethanolamine Binding Protein
pdb|1BD9|B Chain B, Human Phosphatidylethanolamine Binding Protein
pdb|1BEH|A Chain A, Human Phosphatidylethanolamine Binding Protein In Complex
With Cacodylate
pdb|1BEH|B Chain B, Human Phosphatidylethanolamine Binding Protein In Complex
With Cacodylate
pdb|2QYQ|A Chain A, Human Raf Kinase Inhibitor Protein (Rkip) In Complex With
O- Phosphotyrosine
pdb|2L7W|A Chain A, Solution Structure Of The Human Raf-1 Kinase Inhibitor
Protein
Length = 187
Score = 120 bits (302), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 57/114 (50%), Positives = 78/114 (68%)
Query: 9 LIPDPDAPSRDNPTVKEWHHWLMGNIKGGDLEEADHLSRYIGAGPPKNTGLHRYVFLVYK 68
++ DPDAPSR +P +EWHH+L+ N+KG D+ LS Y+G+GPPK TGLHRYV+LVY+
Sbjct: 67 VLTDPDAPSRKDPKYREWHHFLVVNMKGNDISSGTVLSDYVGSGPPKGTGLHRYVWLVYE 126
Query: 69 QPKFIVFTEHRLLDNSIYGRANFSIAEFAKKYDLGDPIAVNYFEAEYDDYVPTL 122
Q + + E L + S R F +A F KKY+L P+A ++AE+DDYVP L
Sbjct: 127 QDRPLKCDEPILSNRSGDHRGKFKVASFRKKYELRAPVAGTCYQAEWDDYVPKL 180
>pdb|1B7A|A Chain A, Structure Of The Phosphatidylethanolamine-Binding Protein
From Bovine Brain
pdb|1B7A|B Chain B, Structure Of The Phosphatidylethanolamine-Binding Protein
From Bovine Brain
Length = 186
Score = 120 bits (302), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 57/114 (50%), Positives = 78/114 (68%)
Query: 9 LIPDPDAPSRDNPTVKEWHHWLMGNIKGGDLEEADHLSRYIGAGPPKNTGLHRYVFLVYK 68
++ DPDAPSR +P +EWHH+L+ N+KG ++ LS Y+G+GPPK TGLHRYV+LVY+
Sbjct: 66 VLTDPDAPSRKDPKYREWHHFLVVNMKGNNISSGTVLSDYVGSGPPKGTGLHRYVWLVYE 125
Query: 69 QPKFIVFTEHRLLDNSIYGRANFSIAEFAKKYDLGDPIAVNYFEAEYDDYVPTL 122
Q + E L + S R F +A F KKY+LG P+A ++AE+DDYVP L
Sbjct: 126 QEGPLKCDEPILSNRSGDHRGKFKVASFRKKYELGAPVAGTCYQAEWDDYVPKL 179
>pdb|2JYZ|A Chain A, Cg7054 Solution Structure
Length = 179
Score = 108 bits (271), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 54/114 (47%), Positives = 78/114 (68%), Gaps = 3/114 (2%)
Query: 9 LIPDPDAPSRDNPTVKEWHHWLMGNIKGGDLEEAD--HLSRYIGAGPPKNTGLHRYVFLV 66
L+ DPDAP+R +P +E HW + NI G + + L+ Y+G+GPPK+TGLHRY+FL+
Sbjct: 59 LMVDPDAPTRQDPKYREILHWSVVNIPGSNENPSGGHSLADYVGSGPPKDTGLHRYIFLL 118
Query: 67 YKQPKFIVFTEHRLLDNSIYGRANFSIAEFAKKYDLGDPIAVNYFEAEYDDYVP 120
Y+Q I T + + + GR NF+ +FA K+ LG+PIA NY++A+YDDYVP
Sbjct: 119 YRQENKIEETP-TISNTTRTGRLNFNARDFAAKHGLGEPIAANYYQAQYDDYVP 171
>pdb|1WKO|A Chain A, Terminal Flower 1 (Tfl1) From Arabidopsis Thaliana
pdb|1WKO|B Chain B, Terminal Flower 1 (Tfl1) From Arabidopsis Thaliana
Length = 180
Score = 62.0 bits (149), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 35/106 (33%), Positives = 59/106 (55%), Gaps = 9/106 (8%)
Query: 12 DPDAPSRDNPTVKEWHHWLMGNIKG-GDLEEADHLSRYIGAGPPKNTGLHRYVFLVYKQP 70
DPD P +P +KE HW++ NI G D + Y P + G+HR+VF++++Q
Sbjct: 77 DPDVPGPSDPFLKEHLHWIVTNIPGTTDATFGKEVVSY--ELPRPSIGIHRFVFVLFRQ- 133
Query: 71 KFIVFTEHRLLDNSIYGRANFSIAEFAKKYDLGDPIAVNYFEAEYD 116
+ R++ +I R +F+ +FA +YDLG P+A +F A+ +
Sbjct: 134 -----KQRRVIFPNIPSRDHFNTRKFAVEYDLGLPVAAVFFNAQRE 174
>pdb|3AXY|A Chain A, Structure Of Florigen Activation Complex Consisting Of
Rice Florigen Hd3a, 14-3-3 Protein Gf14 And Rice Fd
Homolog Osfd1
pdb|3AXY|B Chain B, Structure Of Florigen Activation Complex Consisting Of
Rice Florigen Hd3a, 14-3-3 Protein Gf14 And Rice Fd
Homolog Osfd1
pdb|3AXY|G Chain G, Structure Of Florigen Activation Complex Consisting Of
Rice Florigen Hd3a, 14-3-3 Protein Gf14 And Rice Fd
Homolog Osfd1
pdb|3AXY|H Chain H, Structure Of Florigen Activation Complex Consisting Of
Rice Florigen Hd3a, 14-3-3 Protein Gf14 And Rice Fd
Homolog Osfd1
Length = 170
Score = 61.2 bits (147), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 35/112 (31%), Positives = 59/112 (52%), Gaps = 16/112 (14%)
Query: 9 LIPDPDAPSRDNPTVKEWHHWLMGNIKGGDLEE-ADHLSRYIGAGPPKNTGLHRYVFLVY 67
++ DPDAPS +P ++E+ HWL+ +I G + Y P G+HR VF+++
Sbjct: 70 VMVDPDAPSPSDPNLREYLHWLVTDIPGTTAASFGQEVMSY--ESPRPTMGIHRLVFVLF 127
Query: 68 KQPKFIVFTEHRLLDNSIYG---RANFSIAEFAKKYDLGDPIAVNYFEAEYD 116
+Q L ++Y R NF+ +FA+ Y+LG P+A YF ++ +
Sbjct: 128 QQ----------LGRQTVYAPGWRQNFNTKDFAELYNLGSPVAAVYFNSQRE 169
>pdb|1WPX|B Chain B, Crystal Structure Of Carboxypeptidase Y Inhibitor
Complexed With The Cognate Proteinase
Length = 220
Score = 58.5 bits (140), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 43/129 (33%), Positives = 65/129 (50%), Gaps = 26/129 (20%)
Query: 9 LIPDPDAPSRDNPTVKEWHHWLMGNIKGGDLEEADH--------------------LSRY 48
++ DPDAPS+ + E+ H + ++K L EA H L Y
Sbjct: 93 VMTDPDAPSKTDHKWSEFCHLVECDLKL--LNEATHETSGATEFFASEFNTKGSNTLIEY 150
Query: 49 IGAGPPKNTGLHRYVFLVYKQPKFI---VFTEHRLLDNSIYGRANFSIAEFAKKYDLGDP 105
+G PPK +G HRYVFL+YKQPK + F++ + N YG + ++AK+ +L
Sbjct: 151 MGPAPPKGSGPHRYVFLLYKQPKGVDSSKFSKIKDRPNWGYGTPATGVGKWAKENNL-QL 209
Query: 106 IAVNYFEAE 114
+A N+F AE
Sbjct: 210 VASNFFYAE 218
>pdb|1QOU|A Chain A, Cen (Centroradialis) Protein From Antirrhinum
pdb|1QOU|B Chain B, Cen (Centroradialis) Protein From Antirrhinum
Length = 181
Score = 57.4 bits (137), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 32/109 (29%), Positives = 56/109 (51%), Gaps = 7/109 (6%)
Query: 9 LIPDPDAPSRDNPTVKEWHHWLMGNIKG-GDLEEADHLSRYIGAGPPKNTGLHRYVFLVY 67
++ DPD P +P ++E HW++ +I G D + Y P N G+HR+VFL++
Sbjct: 73 IMTDPDVPGPSDPYLREHLHWIVTDIPGTTDSSFGKEVVSY--EMPRPNIGIHRFVFLLF 130
Query: 68 KQPKFIVFTEHRLLDNSIYGRANFSIAEFAKKYDLGDPIAVNYFEAEYD 116
KQ K +L + R F+ +F ++ +LG P+A +F + +
Sbjct: 131 KQKK----RGQAMLSPPVVCRDGFNTRKFTQENELGLPVAAVFFNCQRE 175
>pdb|1WKP|A Chain A, Flowering Locus T (Ft) From Arabidopsis Thaliana
pdb|1WKP|B Chain B, Flowering Locus T (Ft) From Arabidopsis Thaliana
pdb|1WKP|C Chain C, Flowering Locus T (Ft) From Arabidopsis Thaliana
pdb|1WKP|D Chain D, Flowering Locus T (Ft) From Arabidopsis Thaliana
Length = 171
Score = 57.4 bits (137), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 33/113 (29%), Positives = 58/113 (51%), Gaps = 16/113 (14%)
Query: 9 LIPDPDAPSRDNPTVKEWHHWLMGNIKGGDLEE-ADHLSRYIGAGPPKNTGLHRYVFLVY 67
++ DPD PS NP ++E+ HWL+ +I + + Y P G+HR VF+++
Sbjct: 71 VMVDPDVPSPSNPHLREYLHWLVTDIPATTGTTFGNEIVSY--ENPSPTAGIHRVVFILF 128
Query: 68 KQPKFIVFTEHRLLDNSIYG---RANFSIAEFAKKYDLGDPIAVNYFEAEYDD 117
+Q L ++Y R NF+ EFA+ Y+LG P+A ++ ++ +
Sbjct: 129 RQ----------LGRQTVYAPGWRQNFNTREFAEIYNLGLPVAAVFYNSQRES 171
>pdb|2R77|A Chain A, Crystal Structure Of Phosphatidylethanolamine-Binding
Protein, Pfl0955c, From Plasmodium Falciparum
Length = 205
Score = 43.9 bits (102), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 23/60 (38%), Positives = 32/60 (53%), Gaps = 5/60 (8%)
Query: 12 DPDAPSRDNPTVKEWHHWLMGNIKGGDLEEADH-----LSRYIGAGPPKNTGLHRYVFLV 66
DPD PSR P KE+ HW++ IK +L + + Y+G K TGLHR F++
Sbjct: 92 DPDYPSRLRPDGKEYIHWVVSGIKTKELIKGTQKNCVTILPYVGPSIKKGTGLHRISFII 151
>pdb|2GZQ|A Chain A, Phosphatidylethanolamine-Binding Protein From Plasmodium
Vivax
Length = 200
Score = 41.6 bits (96), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 22/60 (36%), Positives = 31/60 (51%), Gaps = 5/60 (8%)
Query: 12 DPDAPSRDNPTVKEWHHWLMGNIKGGDL-----EEADHLSRYIGAGPPKNTGLHRYVFLV 66
DPD PSR P +++ HW + IK +L + L Y+G K TGLHR F++
Sbjct: 85 DPDFPSRRRPDGRDYVHWAVSGIKSKELVKGTDKNCITLLPYVGPSIKKGTGLHRISFIL 144
>pdb|3OPB|A Chain A, Crystal Structure Of She4p
pdb|3OPB|B Chain B, Crystal Structure Of She4p
Length = 778
Score = 29.3 bits (64), Expect = 1.0, Method: Composition-based stats.
Identities = 11/31 (35%), Positives = 18/31 (58%)
Query: 117 DYVPTLSQDGRAKFSIANFAEKYKLGEPIAV 147
+++P L+Q G K + A K +GEPI +
Sbjct: 489 NFIPQLAQQGAVKIILEYLANKQDIGEPIRI 519
>pdb|1VI3|A Chain A, Crystal Structure Of An Hypothetical Protein
Length = 170
Score = 27.3 bits (59), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 23/76 (30%), Positives = 30/76 (39%), Gaps = 26/76 (34%)
Query: 12 DPDAPSRDNPTVKEWHHWLMGNIKG------------------GDLEEADHLSR--YIGA 51
DPDAP T W HW++ N+ G L+ + Y GA
Sbjct: 54 DPDAP-----TGSGWWHWVVVNLPADTRVLPQGFGSGLVAXPDGVLQTRTDFGKTGYDGA 108
Query: 52 GPPKNTGLHRYVFLVY 67
PPK HRY+F V+
Sbjct: 109 APPKGE-THRYIFTVH 123
>pdb|1FJJ|A Chain A, Crystal Structure Of E.Coli Ybhb Protein, A New Member Of
The Mammalian Pebp Family
Length = 159
Score = 27.3 bits (59), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 23/76 (30%), Positives = 30/76 (39%), Gaps = 26/76 (34%)
Query: 12 DPDAPSRDNPTVKEWHHWLMGNIKG------------------GDLEEADHLSR--YIGA 51
DPDAP T W HW++ N+ G L+ + Y GA
Sbjct: 53 DPDAP-----TGSGWWHWVVVNLPADTRVLPQGFGSGLVAXPDGVLQTRTDFGKTGYDGA 107
Query: 52 GPPKNTGLHRYVFLVY 67
PPK HRY+F V+
Sbjct: 108 APPKGE-THRYIFTVH 122
>pdb|2Y3T|A Chain A, Mutant (K220e) Of The Hsdr Subunit Of The Ecor124i
Restriction Enzyme In Complex With Atp
pdb|2Y3T|B Chain B, Mutant (K220e) Of The Hsdr Subunit Of The Ecor124i
Restriction Enzyme In Complex With Atp
pdb|2Y3T|C Chain C, Mutant (K220e) Of The Hsdr Subunit Of The Ecor124i
Restriction Enzyme In Complex With Atp
pdb|2Y3T|D Chain D, Mutant (K220e) Of The Hsdr Subunit Of The Ecor124i
Restriction Enzyme In Complex With Atp
Length = 1033
Score = 26.9 bits (58), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 13/42 (30%), Positives = 24/42 (57%)
Query: 74 VFTEHRLLDNSIYGRANFSIAEFAKKYDLGDPIAVNYFEAEY 115
+F E+ +N + F+ + ++ DL DP+AV F+AE+
Sbjct: 781 LFGEYLRAENILQNYDEFATLKALQQIDLSDPVAVEKFKAEH 822
>pdb|2W00|A Chain A, Crystal Structure Of The Hsdr Subunit Of The Ecor124i
Restriction Enzyme In Complex With Atp
pdb|2W00|B Chain B, Crystal Structure Of The Hsdr Subunit Of The Ecor124i
Restriction Enzyme In Complex With Atp
Length = 1038
Score = 26.9 bits (58), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 13/42 (30%), Positives = 24/42 (57%)
Query: 74 VFTEHRLLDNSIYGRANFSIAEFAKKYDLGDPIAVNYFEAEY 115
+F E+ +N + F+ + ++ DL DP+AV F+AE+
Sbjct: 781 LFGEYLRAENILQNYDEFATLKALQQIDLSDPVAVEKFKAEH 822
>pdb|2W74|B Chain B, Mutant (K220r) Of The Hsdr Subunit Of The Ecor124i
Restriction Enzyme In Complex With Atp
pdb|2W74|D Chain D, Mutant (K220r) Of The Hsdr Subunit Of The Ecor124i
Restriction Enzyme In Complex With Atp
Length = 875
Score = 26.9 bits (58), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 13/42 (30%), Positives = 24/42 (57%)
Query: 74 VFTEHRLLDNSIYGRANFSIAEFAKKYDLGDPIAVNYFEAEY 115
+F E+ +N + F+ + ++ DL DP+AV F+AE+
Sbjct: 770 LFGEYLRAENILQNYDEFATLKALQQIDLSDPVAVEKFKAEH 811
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.139 0.428
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,915,672
Number of Sequences: 62578
Number of extensions: 255731
Number of successful extensions: 760
Number of sequences better than 100.0: 22
Number of HSP's better than 100.0 without gapping: 18
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 714
Number of HSP's gapped (non-prelim): 37
length of query: 167
length of database: 14,973,337
effective HSP length: 92
effective length of query: 75
effective length of database: 9,216,161
effective search space: 691212075
effective search space used: 691212075
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 48 (23.1 bits)