Query psy15669
Match_columns 167
No_of_seqs 171 out of 1276
Neff 6.6
Searched_HMMs 46136
Date Fri Aug 16 18:32:18 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy15669.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/15669hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG3346|consensus 100.0 3.5E-42 7.5E-47 272.5 11.2 121 3-167 63-184 (185)
2 PLN00169 CETS family protein; 100.0 1.6E-35 3.4E-40 233.7 12.1 111 3-161 62-173 (175)
3 cd00866 PEBP_euk PhosphatidylE 100.0 5.1E-33 1.1E-37 213.5 13.0 112 2-152 38-154 (154)
4 PF01161 PBP: Phosphatidyletha 99.9 8.6E-27 1.9E-31 177.3 9.3 74 2-75 32-117 (146)
5 cd00457 PEBP PhosphatidylEthan 99.9 3E-23 6.4E-28 161.3 10.3 69 2-75 37-128 (159)
6 cd00865 PEBP_bact_arch Phospha 99.7 2.4E-17 5.3E-22 126.7 8.4 68 2-75 38-123 (150)
7 PRK10257 putative kinase inhib 99.7 4.7E-17 1E-21 126.6 8.7 70 2-77 42-132 (158)
8 PRK09818 putative kinase inhib 99.7 6.4E-17 1.4E-21 128.6 8.6 71 2-77 63-155 (183)
9 COG1881 Phospholipid-binding p 99.7 7.6E-17 1.6E-21 127.2 8.2 65 2-72 59-140 (174)
10 TIGR00481 Raf kinase inhibitor 99.7 2.3E-16 5E-21 120.6 8.3 68 2-76 26-115 (141)
11 PLN00169 CETS family protein; 98.3 7.1E-07 1.5E-11 70.6 4.1 33 88-120 139-171 (175)
12 KOG3346|consensus 98.1 9.4E-07 2E-11 70.5 1.8 34 87-120 143-176 (185)
13 cd00866 PEBP_euk PhosphatidylE 97.7 4.8E-05 1E-09 58.1 3.9 27 87-113 128-154 (154)
14 PF01161 PBP: Phosphatidyletha 64.0 4.6 0.0001 30.0 1.7 27 125-151 119-146 (146)
15 cd07921 PCA_45_Doxase_A_like S 24.8 23 0.0005 25.9 -0.2 34 87-141 10-45 (106)
16 PRK04243 50S ribosomal protein 22.2 75 0.0016 25.7 2.3 28 4-34 128-155 (196)
17 PLN03213 repressor of silencin 21.6 72 0.0016 29.8 2.3 25 48-72 129-153 (759)
No 1
>KOG3346|consensus
Probab=100.00 E-value=3.5e-42 Score=272.49 Aligned_cols=121 Identities=54% Similarity=0.991 Sum_probs=112.3
Q ss_pred ccEEEEEEECCCCCCCCCCCCCcEEEEEEeccCCCC-CCCCcccccccCCCCCCCCCCceEEEEEEecCCcccccccccc
Q psy15669 3 ISKSKPLIPDPDAPSRDNPTVKEWHHWLMGNIKGGD-LEEADHLSRYIGAGPPKNTGLHRYVFLVYKQPKFIVFTEHRLL 81 (167)
Q Consensus 3 t~~ytlimvDpDaP~~~~~~~~~~lHWlv~nI~~~~-i~~g~~~~~Y~~P~Pp~g~g~HRYvflL~~q~~~~~~~~~~l~ 81 (167)
.++|||||+|||||+++++++++|||||++|||+++ ++.|++++.|+||.||+|+|.|||+|+||+|+.+.++.+.
T Consensus 63 ~~~yTLvm~DPDaPsr~~p~~rE~lHWlV~nIPg~~~~~~G~~i~~Y~~P~Pp~~tG~HRyVfll~rQ~~~~~~~~~--- 139 (185)
T KOG3346|consen 63 GSLYTLVMTDPDAPSRSDPKFREWLHWLVTNIPGTDGISKGQEISEYLGPGPPKGTGLHRYVFLLYRQPGRLDSDEP--- 139 (185)
T ss_pred CCeEEEEEeCCCCCCCCCCcceeEEEEEEEeecCCccccCCeEeeeeeCCCCCCCCCceEEEEEEEEcCCccccccC---
Confidence 369999999999999999999999999999999997 9999999999999999999999999999999988765432
Q ss_pred cccccCCCcccHHHHHHHcCCCCceeEeEEEeeeeccccccCCCCCCCcCHHHHHHHhCCCCceEEeEEEeccCCCHHHH
Q psy15669 82 DNSIYGRANFSIAEFAKKYDLGDPIAVNYFEAEYDDYVPTLSQDGRAKFSIANFAEKYKLGEPIAVNFFQAEYDDYVPTL 161 (167)
Q Consensus 82 ~~~~~~R~~F~l~~f~~~~~l~~pva~~~~~~~~~~~v~~~~~~~R~~f~~~~f~~~~~L~~pva~~ff~~~~~~~v~~~ 161 (167)
+...|.+|++++|+++++|++||||+||++|||++|+.+
T Consensus 140 -----------------------------------------~~~~R~~F~~~~F~~~~~lg~PvA~~~f~aq~d~~~~~~ 178 (185)
T KOG3346|consen 140 -----------------------------------------SPLSRGNFNTRKFAKKYELGTPVAGNFFQAQWDDYVPKL 178 (185)
T ss_pred -----------------------------------------CCCcccceeHHHHHHHhccCCchhhheehhhcchhhHHH
Confidence 236899999999999999999999999999999999999
Q ss_pred HHHhcC
Q psy15669 162 YKQLGA 167 (167)
Q Consensus 162 ~~~~~~ 167 (167)
++++++
T Consensus 179 ~~~~~~ 184 (185)
T KOG3346|consen 179 YKQLGG 184 (185)
T ss_pred HHhhcC
Confidence 999874
No 2
>PLN00169 CETS family protein; Provisional
Probab=100.00 E-value=1.6e-35 Score=233.67 Aligned_cols=111 Identities=29% Similarity=0.543 Sum_probs=93.1
Q ss_pred ccEEEEEEECCCCCCCCCCCCCcEEEEEEeccCCCC-CCCCcccccccCCCCCCCCCCceEEEEEEecCCcccccccccc
Q psy15669 3 ISKSKPLIPDPDAPSRDNPTVKEWHHWLMGNIKGGD-LEEADHLSRYIGAGPPKNTGLHRYVFLVYKQPKFIVFTEHRLL 81 (167)
Q Consensus 3 t~~ytlimvDpDaP~~~~~~~~~~lHWlv~nI~~~~-i~~g~~~~~Y~~P~Pp~g~g~HRYvflL~~q~~~~~~~~~~l~ 81 (167)
.++|||||+|||+|++.++++++++||++.||+++. ...|+++++|+||+|+. |+|||+|+||+|++.+.+.
T Consensus 62 ~~~ytlim~DpDaP~~~~~~~~~~~HW~v~nip~~~~~~~g~~~~~Y~~P~Pp~--G~HRYvflly~Q~~~~~~~----- 134 (175)
T PLN00169 62 RTFYTLVMVDPDAPSPSNPNLREYLHWLVTDIPATTGATFGQEVVCYESPRPTA--GIHRFVFVLFRQLGRQTVY----- 134 (175)
T ss_pred CceeEEEEECCCCCCCCCCCcccEEEEEEeCCccccccccCccceeecCCCCCC--CceeEEEEEEEcCCCcccC-----
Confidence 479999999999999999999999999999999874 35789999999999984 6999999999998765321
Q ss_pred cccccCCCcccHHHHHHHcCCCCceeEeEEEeeeeccccccCCCCCCCcCHHHHHHHhCCCCceEEeEEEeccCCCHHHH
Q psy15669 82 DNSIYGRANFSIAEFAKKYDLGDPIAVNYFEAEYDDYVPTLSQDGRAKFSIANFAEKYKLGEPIAVNFFQAEYDDYVPTL 161 (167)
Q Consensus 82 ~~~~~~R~~F~l~~f~~~~~l~~pva~~~~~~~~~~~v~~~~~~~R~~f~~~~f~~~~~L~~pva~~ff~~~~~~~v~~~ 161 (167)
...+|.+||+++|+++|||++|||||||++||+++++..
T Consensus 135 -----------------------------------------~~~~R~~F~~~~Fa~~~~L~~PvA~nfF~a~~~~~~~~~ 173 (175)
T PLN00169 135 -----------------------------------------APGWRQNFNTRDFAELYNLGSPVAAVYFNCQRESGSGGR 173 (175)
T ss_pred -----------------------------------------CcccCCCcCHHHHHHHhCCCCceEEEEEEEecCCcCCcc
Confidence 124677888888888888888888888888888877654
No 3
>cd00866 PEBP_euk PhosphatidylEthanolamine-Binding Protein (PEBP) domain present in eukaryotes. PhosphatidylEthanolamine-Binding Proteins (PEBPs) are represented in all three major phylogenetic divisions (eukaryotes, bacteria, archaea). The members in this subgroup are present in eukaryotes. Members here include those in plants such as Arabidopsis thaliana FLOWERING LOCUS (FT) and TERMINAL FLOWER1 (FT1) which function as a promoter and a repressor of the floral transitions, respectively as well as the mammalian Raf kinase inhibitory protein (RKIP) which inhibits MAP kinase (Raf-MEK-ERK), G protein-coupled receptor (GPCR) kinase and NFkappaB signaling cascades. Although their overall structures are similar, the members of the PEBP family have very different substrates and oligomerization states (monomer/dimer/tetramer).
Probab=100.00 E-value=5.1e-33 Score=213.52 Aligned_cols=112 Identities=48% Similarity=0.863 Sum_probs=93.7
Q ss_pred CccEEEEEEECCCCCCCCCCCCCcEEEEEEeccCCCC-----CCCCcccccccCCCCCCCCCCceEEEEEEecCCccccc
Q psy15669 2 GISKSKPLIPDPDAPSRDNPTVKEWHHWLMGNIKGGD-----LEEADHLSRYIGAGPPKNTGLHRYVFLVYKQPKFIVFT 76 (167)
Q Consensus 2 gt~~ytlimvDpDaP~~~~~~~~~~lHWlv~nI~~~~-----i~~g~~~~~Y~~P~Pp~g~g~HRYvflL~~q~~~~~~~ 76 (167)
++++|||||+|||+|.+.++..+++||||++||+++. ...|..+++|+||+|++|+|+|||+|+||+|++.+.+.
T Consensus 38 ~~~~y~lvm~DpD~p~~~~~~~~~~lHwl~~ni~~~~~~~~~~~~~~~~~~Y~~P~Pp~g~g~HRY~fll~~q~~~~~~~ 117 (154)
T cd00866 38 PDKLYTLVMVDPDAPSRDDPKFREWLHWLVTNIPGSDTTTGLVSKGEVLVPYLGPGPPKGTGPHRYVFLLFKQPGGLDFP 117 (154)
T ss_pred CCCeEEEEEECCCCCCCCCCCCCCEEEEEEeCcCCccccccccCCCCCcceeeCCCCCCCCCCccEEEEEEEeCCccCcc
Confidence 5789999999999999998889999999999999875 45678999999999999999999999999999988776
Q ss_pred ccccccccccCCCcccHHHHHHHcCCCCceeEeEEEeeeeccccccCCCCCCCcCHHHHHHHhCCCCceEEeEEEe
Q psy15669 77 EHRLLDNSIYGRANFSIAEFAKKYDLGDPIAVNYFEAEYDDYVPTLSQDGRAKFSIANFAEKYKLGEPIAVNFFQA 152 (167)
Q Consensus 77 ~~~l~~~~~~~R~~F~l~~f~~~~~l~~pva~~~~~~~~~~~v~~~~~~~R~~f~~~~f~~~~~L~~pva~~ff~~ 152 (167)
....... ...+|.+||+++|++++||+.|||+|||++
T Consensus 118 ~~~~~~~---------------------------------------~~~~r~~F~~~~F~~~~~L~~pva~~~f~~ 154 (154)
T cd00866 118 ESKLPPT---------------------------------------SGLGRRGFDVREFAKKNGLGLPVAANFFQV 154 (154)
T ss_pred ccccccC---------------------------------------CccccCCcCHHHHHHHhCCCCcEEEEEEeC
Confidence 5322111 456777888888888888876788888864
No 4
>PF01161 PBP: Phosphatidylethanolamine-binding protein; InterPro: IPR008914 The PEBP (PhosphatidylEthanolamine-Binding Protein) family is a highly conserved group of proteins that have been identified in numerous tissues in a wide variety of organisms, including bacteria, yeast, nematodes, plants, drosophila and mammals. The various functions described for members of this family include lipid binding, neuronal development [], serine protease inhibition [], the control of the morphological switch between shoot growth and flower structures [], and the regulation of several signalling pathways such as the MAP kinase pathway [], and the NF-kappaB pathway []. The control of the latter two pathways involves the PEBP protein RKIP, which interacts with MEK and Raf-1 to inhibit the MAP kinase pathway, and with TAK1, NIK, IKKalpha and IKKbeta to inhibit the NF-kappaB pathway. Other PEBP-like proteins that show strong structural homology to PEBP include Escherichia coli YBHB and YBCL, the Rattus norvegicus (Rat) neuropeptide HCNP, and Antirrhinum majus (Garden snapdragon) protein centroradialis (CEN). Structures have been determined for several members of the PEBP-like family, all of which show extensive fold conservation. The structure consists of a large central beta-sheet flanked by a smaller beta-sheet on one side, and an alpha helix on the other. Sequence alignments show two conserved central regions, CR1 and CR2, that form a consensus signature for the PEBP family. These two regions form part of the ligand-binding site, which can accommodate various anionic groups. The N- and C-terminal regions are the least conserved, and may be involved in interactions with different protein partners. The N-terminal residues 2-12 form the natural cleavage peptide HCNP involved in neuronal development. The C-terminal region is deleted in plant and bacterial PEBP homologues, and may help control accessibility to the active site. ; PDB: 1BD9_A 1BEH_A 2QYQ_A 2L7W_A 3AXY_A 2IQX_C 2IQY_A 1KN3_A 1FUX_A 1B7A_A ....
Probab=99.94 E-value=8.6e-27 Score=177.29 Aligned_cols=74 Identities=42% Similarity=0.860 Sum_probs=61.1
Q ss_pred CccEEEEEEECCCCCCCCCCCCCcEEEEEEeccC---------C--CCCC-CCcccccccCCCCCCCCCCceEEEEEEec
Q psy15669 2 GISKSKPLIPDPDAPSRDNPTVKEWHHWLMGNIK---------G--GDLE-EADHLSRYIGAGPPKNTGLHRYVFLVYKQ 69 (167)
Q Consensus 2 gt~~ytlimvDpDaP~~~~~~~~~~lHWlv~nI~---------~--~~i~-~g~~~~~Y~~P~Pp~g~g~HRYvflL~~q 69 (167)
++++|||+|+|||+|++.+++.++++|||++||+ . ..++ .|+.+++|.||+|++|+|.|||+|+||+|
T Consensus 32 ~~~~y~lim~D~D~P~~~~~~~~~~~Hwl~~ni~~~~~~~~~~~~~~~~~~~g~~~~~Y~~P~Pp~g~g~HrY~f~ly~q 111 (146)
T PF01161_consen 32 GTKSYTLIMVDPDAPSRENPSFGPFLHWLVTNIPSTELPEGSDGARQGINSSGQVIAPYLGPCPPKGSGPHRYVFLLYAQ 111 (146)
T ss_dssp TTSEEEEEEEETTSSBTTSCTTTSEEEEEEEEEETSEE-TTSSTCETSBGGTSEEEES--SB-SSTTSSCEEEEEEEEEE
T ss_pred CCcEEEEEEECCCCCccccCCCCcEEEEEEcCCCCccCCCCCCccEecccccCccccEEcCCcCcCcCCCceEEEEEEEc
Confidence 5789999999999999888889999999999999 1 0122 26678999999999999999999999999
Q ss_pred CCcccc
Q psy15669 70 PKFIVF 75 (167)
Q Consensus 70 ~~~~~~ 75 (167)
++.+.+
T Consensus 112 ~~~~~l 117 (146)
T PF01161_consen 112 PSPLPL 117 (146)
T ss_dssp SSSSTS
T ss_pred CCCCCC
Confidence 986544
No 5
>cd00457 PEBP PhosphatidylEthanolamine-Binding Protein (PEBP) domain. PhosphatidylEthanolamine-Binding Proteins (PEBPs) are represented in all three major phylogenetic divisions (eukaryotes, bacteria, archaea). A number of biological roles for members of the PEBP family include serine protease inhibition, membrane biogenesis, regulation of flowering plant stem architecture, and Raf-1 kinase inhibition. Although their overall structures are similar, the members of the PEBP family bind very different substrates including phospholipids, opioids, and hydrophobic odorant molecules as well as having different oligomerization states (monomer/dimer/tetramer).
Probab=99.89 E-value=3e-23 Score=161.26 Aligned_cols=69 Identities=30% Similarity=0.419 Sum_probs=56.7
Q ss_pred CccEEEEEEECCCCCCCCCCCCCcEEEEEEeccCCCC--CC-----------CCc----------ccccccCCCCCCCCC
Q psy15669 2 GISKSKPLIPDPDAPSRDNPTVKEWHHWLMGNIKGGD--LE-----------EAD----------HLSRYIGAGPPKNTG 58 (167)
Q Consensus 2 gt~~ytlimvDpDaP~~~~~~~~~~lHWlv~nI~~~~--i~-----------~g~----------~~~~Y~~P~Pp~g~g 58 (167)
||++|+|+|+|||+|. .++|+||+++|||.+. +. .+. ..+.|.||+||+|+|
T Consensus 37 ~t~s~ali~~DpDap~-----~~~~~HWvv~nIp~~~~~~~~~~~~~~~~~~~~~~~~n~~g~~~~~~~Y~GP~PP~G~g 111 (159)
T cd00457 37 DVKEYVLVMEDPDAPL-----GRPIVHGLVYGIPANKTSLSNDDFVVTDNGKGGLQGGFKYGKNRGGTVYIGPRPPLGHG 111 (159)
T ss_pred CCeEEEEEEECCCCCC-----CCCceEEEEeccCcccccccccccccCCCCccceeccccccccCCCcCCcCCCCCCCCC
Confidence 6889999999999983 3689999999999863 11 111 234999999999999
Q ss_pred CceEEEEEEecCCcccc
Q psy15669 59 LHRYVFLVYKQPKFIVF 75 (167)
Q Consensus 59 ~HRYvflL~~q~~~~~~ 75 (167)
.|||+|+||+|+..+..
T Consensus 112 ~HrY~f~lyald~~~~~ 128 (159)
T cd00457 112 PHRYFFQVYALDEPLDR 128 (159)
T ss_pred CeeEEEEEEEecCcccc
Confidence 99999999999977653
No 6
>cd00865 PEBP_bact_arch PhosphatidylEthanolamine-Binding Protein (PEBP) domain present in bacteria and archaea. PhosphatidylEthanolamine-Binding Proteins (PEBPs) are represented in all three major phylogenetic divisions (eukaryotes, bacteria, archaea). The members in this subgroup are present in bacterial and archaea. Members here include Escherichia coli YBHB and YBCL which are thought to regulate protein phosphorylation as well as Sulfolobus solfataricus SsCEI which inhibits serine proteases alpha-chymotrypsin and elastase. Although their overall structures are similar, the members of the PEBP family have very different substrates and oligomerization states (monomer/dimer/tetramer). In a few of the bacterial members present here the dimerization interface is proposed to form the ligand binding site, unlike in other PEBP members.
Probab=99.71 E-value=2.4e-17 Score=126.75 Aligned_cols=68 Identities=35% Similarity=0.634 Sum_probs=57.5
Q ss_pred CccEEEEEEECCCCCCCCCCCCCcEEEEEEeccCCC--CCCCCc----------------ccccccCCCCCCCCCCceEE
Q psy15669 2 GISKSKPLIPDPDAPSRDNPTVKEWHHWLMGNIKGG--DLEEAD----------------HLSRYIGAGPPKNTGLHRYV 63 (167)
Q Consensus 2 gt~~ytlimvDpDaP~~~~~~~~~~lHWlv~nI~~~--~i~~g~----------------~~~~Y~~P~Pp~g~g~HRYv 63 (167)
||++|+|+|+|||+|. ..+++||++.|||++ .+..|. ....|.||+||. ++.|||+
T Consensus 38 ~t~s~al~m~D~Dap~-----~~~~~HW~~~nIp~~~~~i~~g~~~~~~~~~~~~g~n~~~~~~Y~gP~Pp~-~~~HrY~ 111 (150)
T cd00865 38 GTKSLALIVEDPDAPT-----GGGFVHWVVWNIPADTTELPEGASRGALPAGAVQGRNDFGEAGYGGPCPPD-GGPHRYV 111 (150)
T ss_pred CCeEEEEEEEcCCCCC-----CCCEEEEEEeccCcccccccCCcccccCCCCCeEeecCCCCCeecCCCCcC-CCceEEE
Confidence 6899999999999982 368999999999986 343332 468999999999 7899999
Q ss_pred EEEEecCCcccc
Q psy15669 64 FLVYKQPKFIVF 75 (167)
Q Consensus 64 flL~~q~~~~~~ 75 (167)
|+||+++..+..
T Consensus 112 f~vyAld~~l~~ 123 (150)
T cd00865 112 FTVYALDVPLLL 123 (150)
T ss_pred EEEEEeCCccCC
Confidence 999999987765
No 7
>PRK10257 putative kinase inhibitor protein; Provisional
Probab=99.70 E-value=4.7e-17 Score=126.65 Aligned_cols=70 Identities=34% Similarity=0.557 Sum_probs=56.6
Q ss_pred CccEEEEEEECCCCCCCCCCCCCcEEEEEEeccCCC--CCCC-----------Cc-------ccccccCCCCCCCCCCce
Q psy15669 2 GISKSKPLIPDPDAPSRDNPTVKEWHHWLMGNIKGG--DLEE-----------AD-------HLSRYIGAGPPKNTGLHR 61 (167)
Q Consensus 2 gt~~ytlimvDpDaP~~~~~~~~~~lHWlv~nI~~~--~i~~-----------g~-------~~~~Y~~P~Pp~g~g~HR 61 (167)
||++|+|+|+|||+|.. ..|+||++.|||++ .+.+ |. ....|.||+||.|+ .||
T Consensus 42 ~t~s~ali~~DpDap~~-----~~~~HWvv~nIP~~~~~l~eg~~~~~~~~p~g~~~g~n~~g~~gY~GP~PP~g~-~Hr 115 (158)
T PRK10257 42 GTKSFVVTCYDPDAPTG-----SGWWHWVVVNLPADTRVLPQGFGSGLVALPDGVLQTRTDFGKAGYGGAAPPKGE-THR 115 (158)
T ss_pred CceEEEEEEECCCCCCC-----CcEEEEEEEcCCCCcccccCCCCcccccCCCCceeccccCCCccCcCCCCccCC-Cce
Confidence 68999999999999862 47999999999985 2221 21 15689999999997 699
Q ss_pred EEEEEEecC-Ccccccc
Q psy15669 62 YVFLVYKQP-KFIVFTE 77 (167)
Q Consensus 62 YvflL~~q~-~~~~~~~ 77 (167)
|+|.||+++ ..+.+++
T Consensus 116 Y~f~vyALd~~~L~l~~ 132 (158)
T PRK10257 116 YIFTVHALDVERIDVDE 132 (158)
T ss_pred EEEEEEEecCcccCCCC
Confidence 999999999 5677654
No 8
>PRK09818 putative kinase inhibitor; Provisional
Probab=99.69 E-value=6.4e-17 Score=128.58 Aligned_cols=71 Identities=31% Similarity=0.529 Sum_probs=57.2
Q ss_pred CccEEEEEEECCCCCCCCCCCCCcEEEEEEeccCCCC--CCC------------Cc-------ccccccCCCCCCCCCCc
Q psy15669 2 GISKSKPLIPDPDAPSRDNPTVKEWHHWLMGNIKGGD--LEE------------AD-------HLSRYIGAGPPKNTGLH 60 (167)
Q Consensus 2 gt~~ytlimvDpDaP~~~~~~~~~~lHWlv~nI~~~~--i~~------------g~-------~~~~Y~~P~Pp~g~g~H 60 (167)
||++|+|+|.|||+|.. ..|+||+++|||++. +.+ |. ....|.|||||.|++.|
T Consensus 63 gtks~aLi~~DpDaP~g-----~~~~HWvv~nIP~~~~~l~eg~~~~~~~~~~~g~~~g~N~~g~~gY~GP~PP~G~g~H 137 (183)
T PRK09818 63 GTKSFAVTVYDPDAPTG-----SGWWHWTVANIPATVTYLPADAGRRDGTKLPTGAVQGRNDFGYAGFGGACPPKGDKPH 137 (183)
T ss_pred CcEEEEEEEECCCCCCC-----CcEEEEEEEcCCCCccccCCCCcccccccCCCCCEEeecCCCCCceECCCCccCCCCE
Confidence 68999999999999862 379999999999752 221 21 14689999999999999
Q ss_pred eEEEEEEecC-Ccccccc
Q psy15669 61 RYVFLVYKQP-KFIVFTE 77 (167)
Q Consensus 61 RYvflL~~q~-~~~~~~~ 77 (167)
||+|.||+++ +.+.+++
T Consensus 138 rY~F~vyALd~~~l~l~~ 155 (183)
T PRK09818 138 HYQFKVWALKTDKIPVDS 155 (183)
T ss_pred EEEEEEEEecCcccCCCC
Confidence 9999999998 5566543
No 9
>COG1881 Phospholipid-binding protein [General function prediction only]
Probab=99.69 E-value=7.6e-17 Score=127.20 Aligned_cols=65 Identities=38% Similarity=0.665 Sum_probs=53.9
Q ss_pred CccEEEEEEECCCCCCCCCCCCCcEEEEEEeccCCC--CCCCC---------------cccccccCCCCCCCCCCceEEE
Q psy15669 2 GISKSKPLIPDPDAPSRDNPTVKEWHHWLMGNIKGG--DLEEA---------------DHLSRYIGAGPPKNTGLHRYVF 64 (167)
Q Consensus 2 gt~~ytlimvDpDaP~~~~~~~~~~lHWlv~nI~~~--~i~~g---------------~~~~~Y~~P~Pp~g~g~HRYvf 64 (167)
||++|+|+|.|||||+ ...|+||++.|||.. .+..+ -....|.|||||.|+| |||.|
T Consensus 59 ~tkS~AL~v~DpDAP~-----g~~~~HWvv~nIp~~~~~~~~~~~~~~~~~~~qg~Nd~g~~~Y~Gp~PP~g~~-HrY~f 132 (174)
T COG1881 59 GTKSFALTVDDPDAPT-----GGGWVHWVVANIPADVTELPEGSGPKSKIGIVQGINDFGSRGYGGPCPPKGHG-HRYYF 132 (174)
T ss_pred CCeeEEEEEECCCCCC-----CCcEEEEEEEccCCcccccccccccccccceEEeeccccccCcccCCCCCCCC-eEEEE
Confidence 7899999999999996 378999999999973 22111 1245699999999998 99999
Q ss_pred EEEecCCc
Q psy15669 65 LVYKQPKF 72 (167)
Q Consensus 65 lL~~q~~~ 72 (167)
.||+++-.
T Consensus 133 ~vyALd~~ 140 (174)
T COG1881 133 TVYALDVE 140 (174)
T ss_pred EEEEcccc
Confidence 99999854
No 10
>TIGR00481 Raf kinase inhibitor-like protein, YbhB/YbcL family.
Probab=99.67 E-value=2.3e-16 Score=120.60 Aligned_cols=68 Identities=38% Similarity=0.645 Sum_probs=54.6
Q ss_pred CccEEEEEEECCCCCCCCCCCCCcEEEEEEeccCCC--CCCC-----------C-c-------ccccccCCCCCCCCCCc
Q psy15669 2 GISKSKPLIPDPDAPSRDNPTVKEWHHWLMGNIKGG--DLEE-----------A-D-------HLSRYIGAGPPKNTGLH 60 (167)
Q Consensus 2 gt~~ytlimvDpDaP~~~~~~~~~~lHWlv~nI~~~--~i~~-----------g-~-------~~~~Y~~P~Pp~g~g~H 60 (167)
||++|+|+|+|||+|.. ..|+||++.|||++ .|.+ | . ....|.|||||.|+ |
T Consensus 26 ~t~s~al~~~D~Dap~~-----~~~~HWv~~nIp~~~~~l~e~~~~~~~~~~~g~~~~g~n~~g~~~Y~GP~PP~g~--H 98 (141)
T TIGR00481 26 GAKSLALTCIDPDAPTG-----CGWWHWVVVNIPADTTVLPENASSDDKRLPQGVPLQGRNDFGKSGYIGPCPPKGD--H 98 (141)
T ss_pred CceEEEEEEECCCCCCC-----CCeEEEEEecCCCCcccccCCccccccccCCcceeEeeccCCCccEeCCCCcCCC--E
Confidence 68999999999999863 24999999999984 2221 2 0 15689999999987 9
Q ss_pred eEEEEEEecCCc-cccc
Q psy15669 61 RYVFLVYKQPKF-IVFT 76 (167)
Q Consensus 61 RYvflL~~q~~~-~~~~ 76 (167)
||+|.||+++.. +.++
T Consensus 99 rY~f~vyALd~~~l~l~ 115 (141)
T TIGR00481 99 RYLFTVYALDTEKLDLD 115 (141)
T ss_pred EEEEEEEEecCCCCCCC
Confidence 999999999965 6654
No 11
>PLN00169 CETS family protein; Provisional
Probab=98.29 E-value=7.1e-07 Score=70.64 Aligned_cols=33 Identities=36% Similarity=0.717 Sum_probs=31.3
Q ss_pred CCcccHHHHHHHcCCCCceeEeEEEeeeecccc
Q psy15669 88 RANFSIAEFAKKYDLGDPIAVNYFEAEYDDYVP 120 (167)
Q Consensus 88 R~~F~l~~f~~~~~l~~pva~~~~~~~~~~~v~ 120 (167)
|.+||+++|+++++||+|||||||++||++.++
T Consensus 139 R~~F~~~~Fa~~~~L~~PvA~nfF~a~~~~~~~ 171 (175)
T PLN00169 139 RQNFNTRDFAELYNLGSPVAAVYFNCQRESGSG 171 (175)
T ss_pred CCCcCHHHHHHHhCCCCceEEEEEEEecCCcCC
Confidence 789999999999999999999999999999865
No 12
>KOG3346|consensus
Probab=98.14 E-value=9.4e-07 Score=70.50 Aligned_cols=34 Identities=59% Similarity=1.155 Sum_probs=32.1
Q ss_pred CCCcccHHHHHHHcCCCCceeEeEEEeeeecccc
Q psy15669 87 GRANFSIAEFAKKYDLGDPIAVNYFEAEYDDYVP 120 (167)
Q Consensus 87 ~R~~F~l~~f~~~~~l~~pva~~~~~~~~~~~v~ 120 (167)
.|.+|++++|+++++||.|||++||++|||++|+
T Consensus 143 ~R~~F~~~~F~~~~~lg~PvA~~~f~aq~d~~~~ 176 (185)
T KOG3346|consen 143 SRGNFNTRKFAKKYELGTPVAGNFFQAQWDDYVP 176 (185)
T ss_pred cccceeHHHHHHHhccCCchhhheehhhcchhhH
Confidence 3789999999999999999999999999999976
No 13
>cd00866 PEBP_euk PhosphatidylEthanolamine-Binding Protein (PEBP) domain present in eukaryotes. PhosphatidylEthanolamine-Binding Proteins (PEBPs) are represented in all three major phylogenetic divisions (eukaryotes, bacteria, archaea). The members in this subgroup are present in eukaryotes. Members here include those in plants such as Arabidopsis thaliana FLOWERING LOCUS (FT) and TERMINAL FLOWER1 (FT1) which function as a promoter and a repressor of the floral transitions, respectively as well as the mammalian Raf kinase inhibitory protein (RKIP) which inhibits MAP kinase (Raf-MEK-ERK), G protein-coupled receptor (GPCR) kinase and NFkappaB signaling cascades. Although their overall structures are similar, the members of the PEBP family have very different substrates and oligomerization states (monomer/dimer/tetramer).
Probab=97.67 E-value=4.8e-05 Score=58.07 Aligned_cols=27 Identities=52% Similarity=0.946 Sum_probs=25.0
Q ss_pred CCCcccHHHHHHHcCCCCceeEeEEEe
Q psy15669 87 GRANFSIAEFAKKYDLGDPIAVNYFEA 113 (167)
Q Consensus 87 ~R~~F~l~~f~~~~~l~~pva~~~~~~ 113 (167)
.|.+||+++|++++||+.|||++||++
T Consensus 128 ~r~~F~~~~F~~~~~L~~pva~~~f~~ 154 (154)
T cd00866 128 GRRGFDVREFAKKNGLGLPVAANFFQV 154 (154)
T ss_pred ccCCcCHHHHHHHhCCCCcEEEEEEeC
Confidence 689999999999999999999999985
No 14
>PF01161 PBP: Phosphatidylethanolamine-binding protein; InterPro: IPR008914 The PEBP (PhosphatidylEthanolamine-Binding Protein) family is a highly conserved group of proteins that have been identified in numerous tissues in a wide variety of organisms, including bacteria, yeast, nematodes, plants, drosophila and mammals. The various functions described for members of this family include lipid binding, neuronal development [], serine protease inhibition [], the control of the morphological switch between shoot growth and flower structures [], and the regulation of several signalling pathways such as the MAP kinase pathway [], and the NF-kappaB pathway []. The control of the latter two pathways involves the PEBP protein RKIP, which interacts with MEK and Raf-1 to inhibit the MAP kinase pathway, and with TAK1, NIK, IKKalpha and IKKbeta to inhibit the NF-kappaB pathway. Other PEBP-like proteins that show strong structural homology to PEBP include Escherichia coli YBHB and YBCL, the Rattus norvegicus (Rat) neuropeptide HCNP, and Antirrhinum majus (Garden snapdragon) protein centroradialis (CEN). Structures have been determined for several members of the PEBP-like family, all of which show extensive fold conservation. The structure consists of a large central beta-sheet flanked by a smaller beta-sheet on one side, and an alpha helix on the other. Sequence alignments show two conserved central regions, CR1 and CR2, that form a consensus signature for the PEBP family. These two regions form part of the ligand-binding site, which can accommodate various anionic groups. The N- and C-terminal regions are the least conserved, and may be involved in interactions with different protein partners. The N-terminal residues 2-12 form the natural cleavage peptide HCNP involved in neuronal development. The C-terminal region is deleted in plant and bacterial PEBP homologues, and may help control accessibility to the active site. ; PDB: 1BD9_A 1BEH_A 2QYQ_A 2L7W_A 3AXY_A 2IQX_C 2IQY_A 1KN3_A 1FUX_A 1B7A_A ....
Probab=64.03 E-value=4.6 Score=30.04 Aligned_cols=27 Identities=33% Similarity=0.581 Sum_probs=22.4
Q ss_pred CCCCCcCHHHHHHHhCCCCc-eEEeEEE
Q psy15669 125 DGRAKFSIANFAEKYKLGEP-IAVNFFQ 151 (167)
Q Consensus 125 ~~R~~f~~~~f~~~~~L~~p-va~~ff~ 151 (167)
.....++.++..++++|+.+ ++++||+
T Consensus 119 ~~~~~~~~~~~~~~~~L~~~~l~~~y~r 146 (146)
T PF01161_consen 119 DGATKFDLREAFKGHGLGPASLAGNYFR 146 (146)
T ss_dssp BSSTHHTHHHHHHHTTEESEESEEEEEE
T ss_pred CCCCHHHHHHHHHcCCCCCceEEEEEEC
Confidence 34456788999999999877 8999996
No 15
>cd07921 PCA_45_Doxase_A_like Subunit A of the Class III Extradiol dioxygenase, Protocatechuate 4,5-dioxygenase, and similar enzymes. This subfamily includes the A subunit of protocatechuate (PCA) 4,5-dioxygenase (LigAB) and two subfamilies of unknown function. The A subunit is the smaller, non-catalytic subunit of LigAB. PCA 4,5-dioxygenase catalyzes the oxidization and subsequent ring-opening of PCA (or 3,4-dihydroxybenzoic acid), which is an intermediate in the breakdown of lignin and other compounds. PCA 4,5-dioxygenase is one of the aromatic ring opening dioxygenases which play key roles in the degradation of aromatic compounds. As members of the Class III extradiol dioxygenase family, the enzymes use a non-heme Fe(II) to cleave aromatic rings between a hydroxylated carbon and an adjacent non-hydroxylated carbon. LigAB-like class III enzymes are usually composed of two subunits, designated A and B, which form a tetramer composed of two copies of each subunit.
Probab=24.78 E-value=23 Score=25.94 Aligned_cols=34 Identities=15% Similarity=0.484 Sum_probs=27.3
Q ss_pred CCCcccHHHHHHHcCCCCceeEeEEEeeeeccccccCCCCCCCc--CHHHHHHHhCC
Q psy15669 87 GRANFSIAEFAKKYDLGDPIAVNYFEAEYDDYVPTLSQDGRAKF--SIANFAEKYKL 141 (167)
Q Consensus 87 ~R~~F~l~~f~~~~~l~~pva~~~~~~~~~~~v~~~~~~~R~~f--~~~~f~~~~~L 141 (167)
+|.++.|.+|+.+.+ .+..|..| |.+.+++++||
T Consensus 10 s~kgy~LN~f~~sL~---------------------~a~~Re~F~aD~eAy~~~~gL 45 (106)
T cd07921 10 SRKGYALNKMCMSLN---------------------KAENREAFKADEEAYCDKFGL 45 (106)
T ss_pred HHHhhhHHHHHHHHC---------------------CHHHHHHHHhCHHHHHHHcCC
Confidence 577889999998864 34677777 78899999999
No 16
>PRK04243 50S ribosomal protein L15e; Validated
Probab=22.17 E-value=75 Score=25.73 Aligned_cols=28 Identities=18% Similarity=0.355 Sum_probs=21.2
Q ss_pred cEEEEEEECCCCCCCCCCCCCcEEEEEEecc
Q psy15669 4 SKSKPLIPDPDAPSRDNPTVKEWHHWLMGNI 34 (167)
Q Consensus 4 ~~ytlimvDpDaP~~~~~~~~~~lHWlv~nI 34 (167)
+.|-||||||.-|.-.+ .+-+.|+....
T Consensus 128 K~fEVIlVDp~H~aIr~---Dp~~nWI~~~~ 155 (196)
T PRK04243 128 KWYEVILVDPHHPAIKN---DPDLNWICDKS 155 (196)
T ss_pred ccEEEEEecCCCcchhc---Ccccceecccc
Confidence 46899999999987554 46788987443
No 17
>PLN03213 repressor of silencing 3; Provisional
Probab=21.63 E-value=72 Score=29.79 Aligned_cols=25 Identities=28% Similarity=0.333 Sum_probs=20.5
Q ss_pred ccCCCCCCCCCCceEEEEEEecCCc
Q psy15669 48 YIGAGPPKNTGLHRYVFLVYKQPKF 72 (167)
Q Consensus 48 Y~~P~Pp~g~g~HRYvflL~~q~~~ 72 (167)
=+-+.|..|+|.|+|.|.=.+.+.+
T Consensus 129 KvKslPfsGTGKHkYSFr~ieVp~s 153 (759)
T PLN03213 129 KVKAMPLSGTGKHKYSFQRVPLSSS 153 (759)
T ss_pred cccccccCCCccceeeeeeccCCCC
Confidence 3457899999999999988888743
Done!