RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy15669
(167 letters)
>gnl|CDD|176644 cd00866, PEBP_euk, PhosphatidylEthanolamine-Binding Protein (PEBP)
domain present in eukaryotes.
PhosphatidylEthanolamine-Binding Proteins (PEBPs) are
represented in all three major phylogenetic divisions
(eukaryotes, bacteria, archaea). The members in this
subgroup are present in eukaryotes. Members here
include those in plants such as Arabidopsis thaliana
FLOWERING LOCUS (FT) and TERMINAL FLOWER1 (FT1) which
function as a promoter and a repressor of the floral
transitions, respectively as well as the mammalian Raf
kinase inhibitory protein (RKIP) which inhibits MAP
kinase (Raf-MEK-ERK), G protein-coupled receptor (GPCR)
kinase and NFkappaB signaling cascades. Although their
overall structures are similar, the members of the PEBP
family have very different substrates and
oligomerization states (monomer/dimer/tetramer).
Length = 154
Score = 132 bits (333), Expect = 5e-40
Identities = 54/105 (51%), Positives = 67/105 (63%), Gaps = 5/105 (4%)
Query: 12 DPDAPSRDNPTVKEWHHWLMGNIKGGDL-----EEADHLSRYIGAGPPKNTGLHRYVFLV 66
DPDAPSRD+P +EW HWL+ NI G D + + L Y+G GPPK TG HRYVFL+
Sbjct: 48 DPDAPSRDDPKFREWLHWLVTNIPGSDTTTGLVSKGEVLVPYLGPGPPKGTGPHRYVFLL 107
Query: 67 YKQPKFIVFTEHRLLDNSIYGRANFSIAEFAKKYDLGDPIAVNYF 111
+KQP + F E +L S GR F + EFAKK LG P+A N+F
Sbjct: 108 FKQPGGLDFPESKLPPTSGLGRRGFDVREFAKKNGLGLPVAANFF 152
>gnl|CDD|216338 pfam01161, PBP, Phosphatidylethanolamine-binding protein.
Length = 147
Score = 82.1 bits (203), Expect = 1e-20
Identities = 38/112 (33%), Positives = 49/112 (43%), Gaps = 21/112 (18%)
Query: 12 DPDAPSRDNPTVKEWHHWLMGNIKG-----------GDLEEADHLSRYIGAGPPKNTGLH 60
DPDAPSR +P E+ HWL+ NI G + L+ YIG PP TG H
Sbjct: 44 DPDAPSRSDPKGSEFLHWLVTNIPASVTELPGGGVQGVNDFGQTLAGYIGPCPPPGTGPH 103
Query: 61 RYVFLVYKQPKFIVFTEHRLLDNSIYGRANFSIAEFAKKYDLGDP-IAVNYF 111
RYVFL+Y + + R F K + LG +A N+F
Sbjct: 104 RYVFLLYALDEKLDLPAGVTRAEL---REAF------KGHVLGPATLAGNFF 146
>gnl|CDD|176642 cd00457, PEBP, PhosphatidylEthanolamine-Binding Protein (PEBP)
domain. PhosphatidylEthanolamine-Binding Proteins
(PEBPs) are represented in all three major phylogenetic
divisions (eukaryotes, bacteria, archaea). A number of
biological roles for members of the PEBP family include
serine protease inhibition, membrane biogenesis,
regulation of flowering plant stem architecture, and
Raf-1 kinase inhibition. Although their overall
structures are similar, the members of the PEBP family
bind very different substrates including phospholipids,
opioids, and hydrophobic odorant molecules as well as
having different oligomerization states
(monomer/dimer/tetramer).
Length = 159
Score = 65.1 bits (159), Expect = 7e-14
Identities = 29/116 (25%), Positives = 38/116 (32%), Gaps = 36/116 (31%)
Query: 12 DPDAPSRDNPTVKEWHHWLMGNIKGGDLEEAD-----------------------HLSRY 48
DPDAP + H L+ I ++ + Y
Sbjct: 47 DPDAP-----LGRPIVHGLVYGIPANKTSLSNDDFVVTDNGKGGLQGGFKYGKNRGGTVY 101
Query: 49 IGAGPPKNTGLHRYVFLVYKQPKFIVFTEHRLLDN-SIYGRANFSIAEFAKKYDLG 103
IG PP G HRY F VY + L + GR F +A FA+ LG
Sbjct: 102 IGPRPPLGHGPHRYFFQVYALDE-------PLDRSKLGDGRTKFEVARFAEGNVLG 150
>gnl|CDD|177765 PLN00169, PLN00169, CETS family protein; Provisional.
Length = 175
Score = 62.9 bits (153), Expect = 5e-13
Identities = 36/104 (34%), Positives = 56/104 (53%), Gaps = 16/104 (15%)
Query: 12 DPDAPSRDNPTVKEWHHWLMGNIKGGDLEEADHLSRYIGAGPPKNT-GLHRYVFLVYKQP 70
DPDAPS NP ++E+ HWL+ +I A + P+ T G+HR+VF++++Q
Sbjct: 71 DPDAPSPSNPNLREYLHWLVTDIPA--TTGATFGQEVVCYESPRPTAGIHRFVFVLFRQ- 127
Query: 71 KFIVFTEHRLLDNSIYG---RANFSIAEFAKKYDLGDPIAVNYF 111
L ++Y R NF+ +FA+ Y+LG P+A YF
Sbjct: 128 ---------LGRQTVYAPGWRQNFNTRDFAELYNLGSPVAAVYF 162
>gnl|CDD|224793 COG1881, COG1881, Phospholipid-binding protein [General function
prediction only].
Length = 174
Score = 50.1 bits (120), Expect = 4e-08
Identities = 23/77 (29%), Positives = 27/77 (35%), Gaps = 23/77 (29%)
Query: 12 DPDAPSRDNPTVKEWHHWLMGNIKGGDLEEADHLS-----------------RYIGAGPP 54
DPDAP+ W HW++ NI E + Y G PP
Sbjct: 69 DPDAPTG-----GGWVHWVVANIPADVTELPEGSGPKSKIGIVQGINDFGSRGYGGPCPP 123
Query: 55 KNTGLHRYVFLVYKQPK 71
K G HRY F VY
Sbjct: 124 KGHG-HRYYFTVYALDV 139
>gnl|CDD|176643 cd00865, PEBP_bact_arch, PhosphatidylEthanolamine-Binding Protein
(PEBP) domain present in bacteria and archaea.
PhosphatidylEthanolamine-Binding Proteins (PEBPs) are
represented in all three major phylogenetic divisions
(eukaryotes, bacteria, archaea). The members in this
subgroup are present in bacterial and archaea. Members
here include Escherichia coli YBHB and YBCL which are
thought to regulate protein phosphorylation as well as
Sulfolobus solfataricus SsCEI which inhibits serine
proteases alpha-chymotrypsin and elastase. Although
their overall structures are similar, the members of the
PEBP family have very different substrates and
oligomerization states (monomer/dimer/tetramer). In a
few of the bacterial members present here the
dimerization interface is proposed to form the ligand
binding site, unlike in other PEBP members.
Length = 150
Score = 39.9 bits (94), Expect = 1e-04
Identities = 24/74 (32%), Positives = 29/74 (39%), Gaps = 24/74 (32%)
Query: 12 DPDAPSRDNPTVKEWHHWLMGNIKGGDLEEADHLSR------------------YIGAGP 53
DPDAP+ + HW++ NI E + SR Y G P
Sbjct: 48 DPDAPTG-----GGFVHWVVWNIPADTTELPEGASRGALPAGAVQGRNDFGEAGYGGPCP 102
Query: 54 PKNTGLHRYVFLVY 67
P G HRYVF VY
Sbjct: 103 PD-GGPHRYVFTVY 115
>gnl|CDD|129572 TIGR00481, TIGR00481, Raf kinase inhibitor-like protein, YbhB/YbcL
family. [Unknown function, General].
Length = 141
Score = 35.9 bits (83), Expect = 0.003
Identities = 25/77 (32%), Positives = 30/77 (38%), Gaps = 28/77 (36%)
Query: 12 DPDAPSRDNPTVKEWHHWLMGNIKGGDLEEADHLSR---------------------YIG 50
DPDAP T W HW++ NI ++ S YIG
Sbjct: 36 DPDAP-----TGCGWWHWVVVNIPADTTVLPENASSDDKRLPQGVPLQGRNDFGKSGYIG 90
Query: 51 AGPPKNTGLHRYVFLVY 67
PPK G HRY+F VY
Sbjct: 91 PCPPK--GDHRYLFTVY 105
>gnl|CDD|182339 PRK10257, PRK10257, putative kinase inhibitor protein; Provisional.
Length = 158
Score = 34.4 bits (79), Expect = 0.012
Identities = 23/76 (30%), Positives = 30/76 (39%), Gaps = 26/76 (34%)
Query: 12 DPDAPSRDNPTVKEWHHWLMGNIK-------------GGDLEEADHLSR-------YIGA 51
DPDAP T W HW++ N+ L + +R Y GA
Sbjct: 52 DPDAP-----TGSGWWHWVVVNLPADTRVLPQGFGSGLVALPDGVLQTRTDFGKAGYGGA 106
Query: 52 GPPKNTGLHRYVFLVY 67
PPK HRY+F V+
Sbjct: 107 APPKGET-HRYIFTVH 121
>gnl|CDD|238140 cd00228, eu-GS, Eukaryotic Glutathione Synthetase (eu-GS);
catalyses the production of glutathione from
gamma-glutamylcysteine and glycine in an ATP-dependent
manner. Belongs to the ATP-grasp superfamily.
Length = 471
Score = 29.6 bits (67), Expect = 0.75
Identities = 34/127 (26%), Positives = 49/127 (38%), Gaps = 34/127 (26%)
Query: 57 TGLHRYVFLVYKQPKFIVFTEHRLLDNSIYGRANFSIAE-FAKKYDL-GDPIAVNYFEAE 114
T LHRYV K + + +N++ G IAE AK ++ GDP AV F +
Sbjct: 154 TELHRYVLSALGYSKGLD-SNRIPSNNAVKG-----IAEALAKAWEEYGDPRAVVLFVVQ 207
Query: 115 ------YDDYVPTLSQDGRAKFSIA----NFAEKYKLGE------------PIAVNFFQA 152
YD L + + I A+ + G +AV +F+A
Sbjct: 208 NEERNIYDQR--FLEAELLERHQIHVIRKTLADVDEEGSLDDDGTLFVDGQEVAVVYFRA 265
Query: 153 EY--DDY 157
Y DDY
Sbjct: 266 GYTPDDY 272
>gnl|CDD|130674 TIGR01613, primase_Cterm, phage/plasmid primase, P4 family,
C-terminal domain. This model represents a clade
within a larger family of proteins from viruses of
bacteria and animals. Members of this family are found
in phage and plasmids of bacteria and archaea only. The
model describes a domain of about 300 residues, found
generally toward the protein C-terminus [DNA
metabolism, DNA replication, recombination, and repair,
Mobile and extrachromosomal element functions, Prophage
functions].
Length = 304
Score = 27.3 bits (61), Expect = 4.7
Identities = 16/55 (29%), Positives = 20/55 (36%), Gaps = 7/55 (12%)
Query: 12 DPDAPSRDNPTVKEWHHWLMGNIKGGDLEEADHLSRYIGAGPPKNTGLHRYVFLV 66
DP A PT + G GD E ++L R IG N + FL
Sbjct: 35 DPKADC---PTWNGFLLETFG----GDNELIEYLQRVIGYSLTGNYTEQKLFFLY 82
>gnl|CDD|147832 pfam05894, Podovirus_Gp16, Podovirus DNA encapsidation protein
(Gp16). This family consists of several DNA
encapsidation protein (Gp16) sequences from the
phi-29-like viruses. Gene product 16 catalyzes the in
vivo and in vitro genome-encapsidation reaction.
Length = 333
Score = 26.7 bits (59), Expect = 5.7
Identities = 10/46 (21%), Positives = 17/46 (36%)
Query: 87 GRANFSIAEFAKKYDLGDPIAVNYFEAEYDDYVPTLSQDGRAKFSI 132
+ K D N F + D +V S++ + +FSI
Sbjct: 200 EVRHTRFGSLIKGTAYYDMSLDNKFSSNSDLFVYKRSKNSKFRFSI 245
>gnl|CDD|130336 TIGR01269, Tyr_3_monoox, tyrosine 3-monooxygenase, tetrameric.
This model describes tyrosine 3-monooxygenase, a member
of the family of tetrameric, biopterin-dependent
aromatic amino acid hydroxylases found in metazoans. It
is closely related to tetrameric
phenylalanine-4-hydroxylase and tryptophan
5-monooxygenase, and more distantly related to the
monomeric phenylalanine-4-hydroxylase found in some
Gram-negative bacteria.
Length = 457
Score = 26.8 bits (59), Expect = 6.3
Identities = 25/93 (26%), Positives = 42/93 (45%), Gaps = 12/93 (12%)
Query: 76 TEHRLLDNSIYGRANFSIAEFAKKYDLGDPIA-VNYFEAEYDDY--VPTLSQDGRAKFSI 132
T+H + +Y + +IAE A +Y GDPI V Y + E + + V T +D A +
Sbjct: 149 TDHPGFHDKVYRQRREAIAEIAFQYKYGDPIPEVEYTKEEIETWRLVFTTMKDLHASHAC 208
Query: 133 ANFAEKYKLGEPIAVNFFQAEYDDYVPTLYKQL 165
+ + ++L E +Y +Y QL
Sbjct: 209 REYIDAFQLLE---------KYCNYNSESIPQL 232
>gnl|CDD|234924 PRK01229, PRK01229, N-glycosylase/DNA lyase; Provisional.
Length = 208
Score = 26.4 bits (59), Expect = 6.7
Identities = 13/50 (26%), Positives = 19/50 (38%), Gaps = 9/50 (18%)
Query: 1 MGISKSKPLIPDPDAPSRDNPTVKEWHHWLMGNIKGGDLEEADHLSRYIG 50
G K +R+ +L+ NIKG +EA H R +G
Sbjct: 100 YGKLKEIIKADKDQFEARE---------FLVKNIKGIGYKEASHFLRNVG 140
>gnl|CDD|224087 COG1165, MenD,
2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylate
synthase [Coenzyme metabolism].
Length = 566
Score = 26.5 bits (59), Expect = 9.3
Identities = 7/24 (29%), Positives = 11/24 (45%)
Query: 7 KPLIPDPDAPSRDNPTVKEWHHWL 30
+PL+PD + P + HW
Sbjct: 176 EPLVPDLEPEGAGTPWGRPLGHWW 199
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.319 0.139 0.428
Gapped
Lambda K H
0.267 0.0849 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 9,077,019
Number of extensions: 847073
Number of successful extensions: 702
Number of sequences better than 10.0: 1
Number of HSP's gapped: 689
Number of HSP's successfully gapped: 32
Length of query: 167
Length of database: 10,937,602
Length adjustment: 90
Effective length of query: 77
Effective length of database: 6,945,742
Effective search space: 534822134
Effective search space used: 534822134
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 55 (24.7 bits)