RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy15669
(167 letters)
>2iqy_A Phosphatidylethanolamine-binding protein 1; alpha-beta, hydrolase
inhibitor; 1.40A {Rattus norvegicus} PDB: 2iqx_A 1b7a_A*
1a44_A 1beh_A 1bd9_A 2l7w_A 2qyq_A* 1kn3_A
Length = 190
Score = 135 bits (340), Expect = 5e-41
Identities = 57/111 (51%), Positives = 75/111 (67%)
Query: 12 DPDAPSRDNPTVKEWHHWLMGNIKGGDLEEADHLSRYIGAGPPKNTGLHRYVFLVYKQPK 71
DPDAPSR +P +EWHH+L+ N+KG D+ LS Y+G+GPPK+TGLHRYV+LVY+Q +
Sbjct: 73 DPDAPSRKDPKFREWHHFLVVNMKGNDISSGTVLSEYVGSGPPKDTGLHRYVWLVYEQEQ 132
Query: 72 FIVFTEHRLLDNSIYGRANFSIAEFAKKYDLGDPIAVNYFEAEYDDYVPTL 122
+ E L + S R F + F KKY LG P+A F+AE+DD VP L
Sbjct: 133 PLNCDEPILSNKSGDNRGKFKVESFRKKYHLGAPVAGTCFQAEWDDSVPKL 183
>2jyz_A CG7054-PA, GH14779P, PEBP; PEBP/RKIP, molecular modeling, chemical
shift variations, titration, unknown function; NMR
{Drosophila melanogaster}
Length = 179
Score = 131 bits (330), Expect = 1e-39
Identities = 53/113 (46%), Positives = 75/113 (66%), Gaps = 3/113 (2%)
Query: 12 DPDAPSRDNPTVKEWHHWLMGNIKGGD--LEEADHLSRYIGAGPPKNTGLHRYVFLVYKQ 69
DPDAP+R +P +E HW + NI G + L+ Y+G+GPPK+TGLHRY+FL+Y+Q
Sbjct: 62 DPDAPTRQDPKYREILHWSVVNIPGSNENPSGGHSLADYVGSGPPKDTGLHRYIFLLYRQ 121
Query: 70 PKFIVFTEHRLLDNSIYGRANFSIAEFAKKYDLGDPIAVNYFEAEYDDYVPTL 122
I T + + + GR NF+ +FA K+ LG+PIA NY++A+YDDYVP
Sbjct: 122 ENKIEETP-TISNTTRTGRLNFNARDFAAKHGLGEPIAANYYQAQYDDYVPIR 173
>1wko_A Terminal flower 1 protein; CIS-peptide, PEBP, signaling protein;
1.80A {Arabidopsis thaliana} PDB: 1qou_A
Length = 180
Score = 115 bits (289), Expect = 3e-33
Identities = 35/110 (31%), Positives = 59/110 (53%), Gaps = 9/110 (8%)
Query: 12 DPDAPSRDNPTVKEWHHWLMGNIKG-GDLEEADHLSRYIGAGPPKNTGLHRYVFLVYKQP 70
DPD P +P +KE HW++ NI G D + Y P + G+HR+VF++++Q
Sbjct: 77 DPDVPGPSDPFLKEHLHWIVTNIPGTTDATFGKEVVSYEL--PRPSIGIHRFVFVLFRQK 134
Query: 71 KFIVFTEHRLLDNSIYGRANFSIAEFAKKYDLGDPIAVNYFEAEYDDYVP 120
+ R++ +I R +F+ +FA +YDLG P+A +F A+ +
Sbjct: 135 ------QRRVIFPNIPSRDHFNTRKFAVEYDLGLPVAAVFFNAQRETAAR 178
>2gzq_A Phosphatidylethanolamine-binding protein; structural genomics, PSI,
protein structure initiative; HET: MSE; 1.30A
{Plasmodium vivax} PDB: 2r77_A
Length = 200
Score = 115 bits (288), Expect = 5e-33
Identities = 28/115 (24%), Positives = 41/115 (35%), Gaps = 11/115 (9%)
Query: 12 DPDAPSRDNPTVKEWHHWLMGNIKG-----GDLEEADHLSRYIGAGPPKNTGLHRYVFLV 66
DPD PSR P +++ HW + IK G + L Y+G K TGLHR F++
Sbjct: 85 DPDFPSRRRPDGRDYVHWAVSGIKSKELVKGTDKNCITLLPYVGPSIKKGTGLHRISFIL 144
Query: 67 YKQP---KFIVFTEHRLLDNSIYGRANFSIAEFAKKYDLG---DPIAVNYFEAEY 115
K V R F+ + A + N+ +
Sbjct: 145 SLVKEENKGNVTGVPLYRGEHYITRVKFNNCQSAYNVIQMNDMKIVGFNWCQMRR 199
>1wpx_B Carboxypeptidase Y inhibitor; carboxypeptidase inhibitor, serine
proteinase inhibitor, Pro inhibitor complex; HET: NAG
NDG; 2.70A {Saccharomyces cerevisiae} SCOP: b.17.1.1
Length = 220
Score = 113 bits (283), Expect = 5e-32
Identities = 38/124 (30%), Positives = 60/124 (48%), Gaps = 22/124 (17%)
Query: 12 DPDAPSRDNPTVKEWHHWLMGNIKGGDLEEA------------------DHLSRYIGAGP 53
DPDAPS+ + E+ H + ++K + + L Y+G P
Sbjct: 96 DPDAPSKTDHKWSEFCHLVECDLKLLNEATHETSGATEFFASEFNTKGSNTLIEYMGPAP 155
Query: 54 PKNTGLHRYVFLVYKQPKFIVFTEHRLL---DNSIYGRANFSIAEFAKKYDLGDPIAVNY 110
PK +G HRYVFL+YKQPK + ++ + N YG + ++AK+ +L +A N+
Sbjct: 156 PKGSGPHRYVFLLYKQPKGVDSSKFSKIKDRPNWGYGTPATGVGKWAKENNLQ-LVASNF 214
Query: 111 FEAE 114
F AE
Sbjct: 215 FYAE 218
>3axy_A Protein heading DATE 3A; phosphatidylethanolamine-binding protein,
14-3-3 protein, BZ protein, floral induction; HET: SEP;
2.40A {Oryza sativa japonica group} PDB: 1wkp_A
Length = 170
Score = 98.9 bits (246), Expect = 5e-27
Identities = 34/106 (32%), Positives = 55/106 (51%), Gaps = 10/106 (9%)
Query: 12 DPDAPSRDNPTVKEWHHWLMGNIKGGDL-EEADHLSRYIGAGPPKNTGLHRYVFLVYKQP 70
DPDAPS +P ++E+ HWL+ +I G + Y P G+HR VF++++Q
Sbjct: 73 DPDAPSPSDPNLREYLHWLVTDIPGTTAASFGQEVMSYESPRPT--MGIHRLVFVLFQQL 130
Query: 71 KFIVFTEHRLLDNSIYGRANFSIAEFAKKYDLGDPIAVNYFEAEYD 116
R + R NF+ +FA+ Y+LG P+A YF ++ +
Sbjct: 131 G-------RQTVYAPGWRQNFNTKDFAELYNLGSPVAAVYFNSQRE 169
>1fux_A Hypothetical 19.5 kDa protein in EMRE-RUS intergenic region; beta
protein, unknown function; 1.81A {Escherichia coli}
SCOP: b.17.1.2
Length = 166
Score = 47.1 bits (112), Expect = 2e-07
Identities = 19/77 (24%), Positives = 23/77 (29%), Gaps = 26/77 (33%)
Query: 12 DPDAPSRDNPTVKEWHHWLMGNIKGGDLEEADHLS---------------------RYIG 50
DPDAP+ W HW + NI + G
Sbjct: 54 DPDAPTGSG-----WWHWTVVNIPATVTYLPVDAGRRDGTKLPTGAVQGRNDFGYAGFGG 108
Query: 51 AGPPKNTGLHRYVFLVY 67
A PPK H Y F V+
Sbjct: 109 ACPPKGDKPHHYQFKVW 125
>3n08_A Putative phosphatidylethanolamine-binding protein; eukarytic
homolog RAF kinase inhibitor protein (RKIP). csgid
structural genomics; 1.25A {Chlamydia trachomatis}
Length = 153
Score = 45.4 bits (108), Expect = 8e-07
Identities = 17/69 (24%), Positives = 21/69 (30%), Gaps = 16/69 (23%)
Query: 12 DPDAPSRDNPTVKEWHHWLMGNIKGGDLEEADHLS-------------RYIGAGPPKNTG 58
DPD P W HW++ N+ A+ Y PP
Sbjct: 50 DPDVPPSVREDG-LWIHWIVYNLSPVVSNLAEGAQIFAVQGLNTAGEIGYCPPCPP--DA 106
Query: 59 LHRYVFLVY 67
HRY F Y
Sbjct: 107 KHRYYFYAY 115
>2evv_A Hypothetical protein HP0218; alpha-beta structure, dimer,
structural genomics, PSI, prote structure initiative;
HET: MSE; 2.59A {Helicobacter pylori}
Length = 207
Score = 36.1 bits (83), Expect = 0.002
Identities = 21/89 (23%), Positives = 26/89 (29%), Gaps = 38/89 (42%)
Query: 12 DPDAPSRDNPTVKEWHHWLMGNIKGGDLEEADHLS------------------------- 46
D DA + HW++GNI LEE +
Sbjct: 80 DHDAQK---VCGMPFVHWVVGNIAHNVLEENASMMDKRIVQGVNSLTQGFIRSPLNESEK 136
Query: 47 --------RYIGAGPPKNTGLHRYVFLVY 67
YIG PP G H Y+ VY
Sbjct: 137 QRSNLNNSVYIGPMPPN--GDHHYLIQVY 163
>1fjj_A Hypothetical 17.1 kDa protein in MODC-BIOA intergenic region; PEPB
family, lipid binding protein; HET: MSE EPE; 1.66A
{Escherichia coli} SCOP: b.17.1.2 PDB: 1vi3_A*
Length = 159
Score = 34.5 bits (79), Expect = 0.007
Identities = 20/76 (26%), Positives = 26/76 (34%), Gaps = 26/76 (34%)
Query: 12 DPDAPSRDNPTVKEWHHWLMGNIKGGDLEEADHLS--------------------RYIGA 51
DPDAP+ W HW++ N+ Y GA
Sbjct: 53 DPDAPTG-----SGWWHWVVVNLPADTRVLPQGFGSGLVAMPDGVLQTRTDFGKTGYDGA 107
Query: 52 GPPKNTGLHRYVFLVY 67
PPK HRY+F V+
Sbjct: 108 APPKGET-HRYIFTVH 122
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 31.4 bits (70), Expect = 0.13
Identities = 30/169 (17%), Positives = 50/169 (29%), Gaps = 52/169 (30%)
Query: 29 WLMGNIKGGDLEE-ADHLSRY--IGAGPPKNT-GLHRYVFLVYKQPKFIVFTEHRLLDNS 84
W ++ D+ + L +Y + P ++T + ++L K + HR + +
Sbjct: 396 W--FDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPS-IYLELKVKLENEYALHRSIVDH 452
Query: 85 IYGRANFSIAEFAKKYDLGD---PIAVNYF------------EAEYDDYVPTLSQDGR-- 127
Y K +D D P YF E + D R
Sbjct: 453 -Y--------NIPKTFDSDDLIPPYLDQYFYSHIGHHLKNIEHPERMTLFRMVFLDFRFL 503
Query: 128 ------------AKFSIANF---AEKYKLGEPIAVNFFQAEYDDYVPTL 161
A SI N + YK I N +Y+ V +
Sbjct: 504 EQKIRHDSTAWNASGSILNTLQQLKFYK--PYICDN--DPKYERLVNAI 548
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 30.0 bits (67), Expect = 0.37
Identities = 30/159 (18%), Positives = 45/159 (28%), Gaps = 39/159 (24%)
Query: 18 RDNPTVKEWHHWLMGNIKGGDLEEADHLSRYIGAGPPKNTGLHRYVF--LVYKQPKFIVF 75
+NP H G KG + E + S I +F + +
Sbjct: 1666 INNPVNLTIH---FGGEKGKRIRE--NYSAMIFETIVDGKLKTEKIFKEINEHSTSYTFR 1720
Query: 76 TEHRLLDNSIYG-RANF--SIAEFA--KKYDLGDPIAVNYFEA-----EY---------- 115
+E LL + + A A F K L A F A EY
Sbjct: 1721 SEKGLLSATQFTQPALTLMEKAAFEDLKSKGLIPADA--TF-AGHSLGEYAALASLADVM 1777
Query: 116 --DDYVPTLSQDGRAKFSIANFAEKYKLGEP----IAVN 148
+ V + G + + +LG IA+N
Sbjct: 1778 SIESLVEVVFYRGMT---MQVAVPRDELGRSNYGMIAIN 1813
>3fhf_A Mjogg, N-glycosylase/DNA lyase, DNA-(apurinic; helix-hairpin-helix,
8-oxoguanine, 8-OXOG, DNA damage, DNA repair,
glycosidase; 2.00A {Methanocaldococcus jannaschii} PDB:
3knt_A*
Length = 214
Score = 28.9 bits (64), Expect = 0.65
Identities = 11/33 (33%), Positives = 15/33 (45%)
Query: 21 PTVKEWHHWLMGNIKGGDLEEADHLSRYIGAGP 53
K +L+ NIKG +EA H R +G
Sbjct: 117 ENEKVAREFLVRNIKGIGYKEASHFLRNVGYDD 149
>4a17_D L21, RPL11, 60S ribosomal protein L11; eukaryotic ribosome,
ribosome, eukaryotic initiation factor 60S, translation,
large ribosomal subunit; 3.52A {Tetrahymena thermophila}
PDB: 4a1a_D 4a1c_D 4a1e_D
Length = 172
Score = 28.3 bits (64), Expect = 0.96
Identities = 15/93 (16%), Positives = 29/93 (31%), Gaps = 26/93 (27%)
Query: 77 EHRLLDNSIYGRANFS--IAEFAKKYDLGDPIAVNYFEAEYD--------DYVPTLSQDG 126
E L + NF I E +YD D+ L + G
Sbjct: 88 EMELRKKNFSNTGNFGFGIQEHI------------DLGMKYDPSTGIFGMDFYVVLERPG 135
Query: 127 ----RAKFSIANFAEKYKLGEPIAVNFFQAEYD 155
R + + + + + +N+F+ E++
Sbjct: 136 TRVARRRRATSRVGNNQMISKEECINWFKTEFE 168
>1omh_A TRWC protein; protein-DNA complex, bacterial conjugation, relaxase,
DNA replication, transferase/DNA complex; HET: DNA;
1.95A {Escherichia coli} SCOP: d.89.1.5 PDB: 1osb_A*
1qx0_A* 1s6m_A* 1zm5_A* 2cdm_A
Length = 293
Score = 27.4 bits (60), Expect = 2.4
Identities = 13/60 (21%), Positives = 24/60 (40%), Gaps = 3/60 (5%)
Query: 107 AVNYFEAEYDDYVPTLSQDGRAKFSIANFAEKYKLGEPIAVNFFQAEYDDYVPTLYKQLG 166
A +Y+E DDY ++DG A AE+ L + F+ + ++ +
Sbjct: 15 AASYYEDGADDY---YAKDGDASEWQGKGAEELGLSGEVDSKRFRELLAGNIGEGHRIMR 71
>3n0u_A Probable N-glycosylase/DNA lyase; structural genomics, ISFI, DNA
repair, 8-oxoguanine, base EX repair, PSI-2, protein
structure initiative; 1.50A {Thermotoga maritima}
Length = 219
Score = 26.9 bits (59), Expect = 3.4
Identities = 9/35 (25%), Positives = 13/35 (37%)
Query: 20 NPTVKEWHHWLMGNIKGGDLEEADHLSRYIGAGPP 54
+ +L+ N KG +EA H R G
Sbjct: 121 KGDPFQSREFLVRNAKGIGWKEASHFLRNTGVEDL 155
>4arc_A Leucine--tRNA ligase; ligase-RNA complex, nucleotide-binding,
protein biosynthesis I aminoacyl-tRNA synthetase,
ATP-binding; 2.00A {Escherichia coli} PDB: 4aq7_A
4ari_A* 4as1_A*
Length = 880
Score = 26.4 bits (59), Expect = 5.2
Identities = 15/77 (19%), Positives = 22/77 (28%), Gaps = 30/77 (38%)
Query: 95 EFAKKYDL--------GDPIAVNYFEAEYDDYVPTLSQDGR--------------AKFSI 132
EFA KY L D + + + G A +I
Sbjct: 367 EFASKYGLNIKPVILAADGSEPDLSQQALTE-------KGVLFNSGEFNGLDHEAAFNAI 419
Query: 133 ANFAEKYKLGEPIAVNF 149
A+ +GE VN+
Sbjct: 420 ADKLTAMGVGER-KVNY 435
>2v0c_A Aminoacyl-tRNA synthetase; ligase, nucleotide-binding, protein
biosynthesis; HET: LMS ANZ; 1.85A {Thermus thermophilus}
PDB: 1h3n_A* 1obc_A* 1obh_A* 2bte_A* 2byt_A 2v0g_A*
Length = 878
Score = 26.4 bits (59), Expect = 5.7
Identities = 16/70 (22%), Positives = 27/70 (38%), Gaps = 16/70 (22%)
Query: 95 EFAKKYDL---------GDPIAVNYFEAEYDDYVPTLSQ--DG----RAKFSIANFAEKY 139
EFA+K+ L G+P+ A + + S DG K + + E+
Sbjct: 349 EFARKFGLPIKKVIERPGEPLPEPLERAYEEPGIMVNSGPFDGTESEEGKRKVIAWLEEK 408
Query: 140 KLGEPIAVNF 149
LG+ V +
Sbjct: 409 GLGKG-RVTY 417
>1vq8_D 50S ribosomal protein L5P; ribosome 50S, protein-protein complex,
RNA-RNA complex, PROT complex, peptidyl transferase
reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A
{Haloarcula marismortui} SCOP: d.77.1.1 PDB: 1vq4_D*
1vq5_D* 1vq6_D* 1vq7_D* 1s72_D* 1vq9_D* 1vqk_D* 1vql_D*
1vqm_D* 1vqn_D* 1vqo_D* 1vqp_D* 1yhq_D* 1yi2_D* 1yij_D*
1yit_D* 1yj9_D* 1yjn_D* 1yjw_D* 2otj_D* ...
Length = 177
Score = 26.1 bits (58), Expect = 5.8
Identities = 6/21 (28%), Positives = 11/21 (52%), Gaps = 2/21 (9%)
Query: 127 RAKFSIANFAEKYKLGEPIAV 147
+AK ++ F + G+PI
Sbjct: 54 KAKRTVGEF--DIREGDPIGA 72
>3l6t_A TRAI, mobilization protein TRAI; TRWC superfamily of relaxase
enzymes, conjugative relaxase, relaxase, conjugal
nickase, hydrolase; HET: CIT; 1.93A {Escherichia coli}
PDB: 3l57_A*
Length = 302
Score = 25.8 bits (56), Expect = 6.8
Identities = 12/54 (22%), Positives = 17/54 (31%), Gaps = 3/54 (5%)
Query: 107 AVNYFEAEYDDYVPTLSQDGRAKFSIANFAEKYKLGEPIAVNFFQAEYDDYVPT 160
V Y+ DDY S+D AE L + F+ + T
Sbjct: 18 VVGYYSDAKDDY---YSKDSSFTSWQGTGAEALGLSGDVESARFKELLVGEIDT 68
>2qcu_A Aerobic glycerol-3-phosphate dehydrogenase; glycerol-3-phoshate
dehydrogenase, oxidoreductase; HET: BOG FAD TAM; 1.75A
{Escherichia coli} PDB: 2r45_A* 2r46_A* 2r4e_A* 2r4j_A*
Length = 501
Score = 26.0 bits (58), Expect = 8.0
Identities = 21/104 (20%), Positives = 32/104 (30%), Gaps = 24/104 (23%)
Query: 33 NIKGGDL-------EEA-DHLSRYIGAGPP---KNTGLH----------RYVFLVYKQPK 71
++ GG L E A + L+ Y P K + L L + P
Sbjct: 349 SVFGGKLTTYRKLAEHALEKLTPYYQGIGPAWTKESVLPGGAIEGDRDDYAARLRRRYPF 408
Query: 72 FIVFTEHRLLDNSIYGRANFSIAEFAKKY-DLGDPIAVNYFEAE 114
YG + + A DLG+ ++EAE
Sbjct: 409 LTESLARHYART--YGSNSELLLGNAGTVSDLGEDFGHEFYEAE 450
>1tz7_A 4-alpha-glucanotransferase; (beta, alpha)8- barrel; 2.15A {Aquifex
aeolicus} SCOP: c.1.8.1
Length = 505
Score = 25.7 bits (57), Expect = 8.1
Identities = 10/49 (20%), Positives = 15/49 (30%), Gaps = 10/49 (20%)
Query: 19 DNPTVKEWHHWLMGNIKGGDLEEADHLSRYIGAGPPKNT---GLHRYVF 64
D P ++ W + E L Y+G + L R V
Sbjct: 405 DLPPIRGW-------FENLGEESRKRLFEYLGREIKEEKVNEELIRLVL 446
>2ajg_A Leucyl-tRNA synthetase; editing domain, ligase; 2.00A {Escherichia
coli} PDB: 2ajh_A 2aji_A
Length = 196
Score = 25.5 bits (57), Expect = 8.3
Identities = 13/71 (18%), Positives = 19/71 (26%), Gaps = 29/71 (40%)
Query: 95 EFAKKYDL--------GDPIAVNYFEAEYDDYVPTLSQDGR--------------AKFSI 132
EFA KY L D + + + G A +I
Sbjct: 130 EFASKYGLNIKPVILAADGSEPDLSQQALTE-------KGVLFNSGEFNGLDHEAAFNAI 182
Query: 133 ANFAEKYKLGE 143
A+ +GE
Sbjct: 183 ADKLTAMGVGE 193
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.319 0.139 0.428
Gapped
Lambda K H
0.267 0.0797 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 2,793,127
Number of extensions: 162804
Number of successful extensions: 413
Number of sequences better than 10.0: 1
Number of HSP's gapped: 394
Number of HSP's successfully gapped: 39
Length of query: 167
Length of database: 6,701,793
Length adjustment: 87
Effective length of query: 80
Effective length of database: 4,272,666
Effective search space: 341813280
Effective search space used: 341813280
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 54 (24.5 bits)