BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= psy1567
         (463 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|4GF2|A Chain A, Crystal Structure Of Plasmodium Falciparum Erythrocyte
           Binding Antigen 140 (Pfeba-140BAEBL)
          Length = 615

 Score = 30.0 bits (66), Expect = 2.9,   Method: Compositional matrix adjust.
 Identities = 23/112 (20%), Positives = 43/112 (38%), Gaps = 6/112 (5%)

Query: 84  DIFSNGNVANRSPYKANWWTQFKAVLWRSWLSVRKDPTLMKVRLLQTLMVSIMIGLIYFG 143
           D +   NV   +  K  WW + KA LW   +   K     +  ++      I + +  + 
Sbjct: 125 DYYKEKNVEKLNNIKKEWWEKNKANLWNHMIVNHKGNIAKECAIIPAEEPQINLWIKEWN 184

Query: 144 QNL---DQDGVMNINGALFICLTNMTFQNVFAVISVFCSELPLFMREHQNGM 192
           +N     +   +NI      C+ N  ++  F    + CS    FM++ +  M
Sbjct: 185 ENFLMEKKRLFLNIKDK---CVENKKYEACFGGCRLPCSSYTSFMKKSKTQM 233



 Score = 30.0 bits (66), Expect = 2.9,   Method: Compositional matrix adjust.
 Identities = 23/112 (20%), Positives = 43/112 (38%), Gaps = 6/112 (5%)

Query: 253 DIFSNGNVANRSPYKANWWTQFKAVLWRSWLSVRKDPTLMKVRLLQTLMVSIMIGLIYFG 312
           D +   NV   +  K  WW + KA LW   +   K     +  ++      I + +  + 
Sbjct: 125 DYYKEKNVEKLNNIKKEWWEKNKANLWNHMIVNHKGNIAKECAIIPAEEPQINLWIKEWN 184

Query: 313 QNL---DQDGVMNINGALFICLTNMTFQNVFAVISVFCSELPLFMREHQNGM 361
           +N     +   +NI      C+ N  ++  F    + CS    FM++ +  M
Sbjct: 185 ENFLMEKKRLFLNIKDK---CVENKKYEACFGGCRLPCSSYTSFMKKSKTQM 233


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.330    0.141    0.439 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 11,660,819
Number of Sequences: 62578
Number of extensions: 425410
Number of successful extensions: 975
Number of sequences better than 100.0: 3
Number of HSP's better than 100.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 969
Number of HSP's gapped (non-prelim): 7
length of query: 463
length of database: 14,973,337
effective HSP length: 102
effective length of query: 361
effective length of database: 8,590,381
effective search space: 3101127541
effective search space used: 3101127541
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.9 bits)
S2: 53 (25.0 bits)