Query psy1567
Match_columns 463
No_of_seqs 211 out of 2441
Neff 9.4
Searched_HMMs 46136
Date Fri Aug 16 18:33:25 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy1567.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/1567hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03140 ABC transporter G fam 100.0 4.4E-55 9.4E-60 488.6 47.9 450 2-463 419-1387(1470)
2 TIGR00956 3a01205 Pleiotropic 100.0 1.9E-55 4E-60 493.4 42.4 459 2-463 292-1276(1394)
3 KOG0065|consensus 100.0 9.6E-53 2.1E-57 442.6 37.4 450 2-463 343-1295(1391)
4 PLN03211 ABC transporter G-25; 100.0 2.7E-40 5.8E-45 346.4 27.7 235 2-242 288-526 (659)
5 TIGR00955 3a01204 The Eye Pigm 100.0 1.5E-39 3.3E-44 341.0 29.3 233 2-242 248-480 (617)
6 KOG0061|consensus 100.0 8.3E-36 1.8E-40 309.3 28.0 197 267-463 333-529 (613)
7 PLN03140 ABC transporter G fam 100.0 2.2E-33 4.7E-38 314.7 24.9 227 5-247 1109-1340(1470)
8 TIGR00956 3a01205 Pleiotropic 100.0 3.6E-33 7.9E-38 314.0 23.2 230 5-248 992-1230(1394)
9 KOG0065|consensus 100.0 2.9E-31 6.2E-36 280.9 17.1 227 5-246 1020-1247(1391)
10 KOG0061|consensus 99.9 1.1E-21 2.4E-26 204.1 23.7 232 2-249 252-484 (613)
11 PLN03211 ABC transporter G-25; 99.9 3.9E-21 8.4E-26 202.1 20.7 194 265-463 383-576 (659)
12 TIGR00955 3a01204 The Eye Pigm 99.8 5.8E-20 1.3E-24 193.2 21.8 201 263-463 332-532 (617)
13 PF01061 ABC2_membrane: ABC-2 99.8 1.6E-20 3.5E-25 171.2 -2.0 188 272-462 1-189 (210)
14 TIGR01247 drrB daunorubicin re 99.5 2.3E-12 5.1E-17 119.8 17.7 179 280-463 1-186 (236)
15 TIGR01291 nodJ ABC-2 type tran 99.5 6.6E-12 1.4E-16 117.8 19.1 187 273-462 6-197 (253)
16 TIGR03861 phenyl_ABC_PedC alco 99.4 2.3E-11 5E-16 114.3 19.8 188 271-462 1-201 (253)
17 PF01061 ABC2_membrane: ABC-2 99.3 1.2E-12 2.7E-17 119.0 2.7 142 103-247 1-143 (210)
18 TIGR00025 Mtu_efflux ABC trans 99.3 3.4E-10 7.5E-15 104.9 18.4 173 286-463 2-178 (232)
19 PRK15066 inner membrane transp 99.1 1.4E-08 3E-13 95.6 20.5 190 270-463 6-200 (257)
20 TIGR01248 drrC daunorubicin re 98.8 1.9E-07 4E-12 80.3 14.2 116 345-463 13-130 (152)
21 TIGR03062 pip_yhgE_Cterm YhgE/ 98.7 2.2E-07 4.7E-12 84.6 11.6 98 362-463 57-154 (208)
22 TIGR03518 ABC_perm_GldF glidin 98.2 0.00018 4E-09 66.7 19.0 164 275-443 2-176 (240)
23 COG0842 ABC-type multidrug tra 98.1 0.00013 2.7E-09 69.3 16.7 179 282-463 42-229 (286)
24 PF03379 CcmB: CcmB protein; 98.0 0.00072 1.6E-08 61.5 18.1 156 274-444 1-165 (215)
25 COG1682 TagG ABC-type polysacc 97.8 0.0034 7.3E-08 58.8 19.4 183 270-461 16-202 (263)
26 PF12679 ABC2_membrane_2: ABC- 97.6 0.008 1.7E-07 57.0 18.8 172 276-449 2-203 (277)
27 PRK15176 Vi polysaccharide exp 97.6 0.0084 1.8E-07 56.4 18.2 186 272-462 19-207 (264)
28 PF12698 ABC2_membrane_3: ABC- 97.5 2.6E-05 5.6E-10 76.1 0.5 112 345-462 181-297 (344)
29 TIGR01190 ccmB heme exporter p 97.3 0.025 5.4E-07 50.9 17.0 152 278-444 2-162 (211)
30 COG4587 ABC-type uncharacteriz 97.0 0.035 7.7E-07 50.2 14.7 192 269-463 3-206 (268)
31 TIGR03861 phenyl_ABC_PedC alco 96.9 0.037 8.1E-07 51.8 14.9 124 102-231 1-136 (253)
32 TIGR01247 drrB daunorubicin re 96.7 0.048 1E-06 50.4 14.0 115 111-229 1-123 (236)
33 TIGR03733 lanti_perm_MutG lant 96.7 0.42 9.1E-06 44.6 20.2 158 278-439 3-166 (248)
34 PF12730 ABC2_membrane_4: ABC- 96.2 0.91 2E-05 40.8 19.2 86 362-448 87-180 (232)
35 COG2386 CcmB ABC-type transpor 96.0 0.9 1.9E-05 40.2 16.4 155 272-441 2-165 (221)
36 COG1277 NosY ABC-type transpor 95.9 1.1 2.5E-05 42.3 18.8 179 272-451 2-195 (278)
37 TIGR01291 nodJ ABC-2 type tran 95.5 0.73 1.6E-05 43.1 15.5 119 105-229 7-134 (253)
38 TIGR00025 Mtu_efflux ABC trans 94.1 2 4.4E-05 39.4 14.4 109 117-231 2-113 (232)
39 PRK15066 inner membrane transp 93.1 7 0.00015 36.5 16.4 126 101-230 6-138 (257)
40 PF06182 ABC2_membrane_6: ABC- 92.4 4.5 9.8E-05 37.1 13.9 99 362-463 71-170 (229)
41 COG1668 NatB ABC-type Na+ effl 91.9 7 0.00015 39.3 15.6 94 348-442 214-319 (407)
42 PF03379 CcmB: CcmB protein; 91.9 9.5 0.00021 34.6 16.5 123 105-242 1-132 (215)
43 TIGR01257 rim_protein retinal- 91.7 5.1 0.00011 48.6 16.1 105 341-448 669-775 (2272)
44 TIGR01257 rim_protein retinal- 90.3 4.7 0.0001 48.9 14.1 96 344-441 1699-1798(2272)
45 TIGR03518 ABC_perm_GldF glidin 88.7 20 0.00043 33.1 15.1 102 106-212 2-109 (240)
46 TIGR03062 pip_yhgE_Cterm YhgE/ 85.7 5.9 0.00013 35.5 9.2 50 194-245 58-107 (208)
47 PF12051 DUF3533: Protein of u 85.4 16 0.00034 36.5 12.7 97 363-463 240-340 (382)
48 COG3559 TnrB3 Putative exporte 82.2 57 0.0012 32.6 18.1 171 288-462 296-489 (536)
49 TIGR03733 lanti_perm_MutG lant 81.4 45 0.00098 30.9 14.4 38 179-216 71-108 (248)
50 PF09847 DUF2074: Predicted pe 77.5 88 0.0019 31.9 29.4 122 265-395 241-362 (449)
51 PF12679 ABC2_membrane_2: ABC- 73.4 65 0.0014 30.0 12.3 26 107-132 2-27 (277)
52 COG4325 Predicted membrane pro 72.1 79 0.0017 31.1 11.9 160 266-442 19-199 (464)
53 KOG0059|consensus 71.9 60 0.0013 36.4 13.1 97 347-446 320-418 (885)
54 COG4200 Uncharacterized protei 69.7 89 0.0019 28.5 16.9 88 354-441 76-176 (239)
55 TIGR03061 pip_yhgE_Nterm YhgE/ 60.1 11 0.00025 32.4 3.7 33 280-312 1-36 (164)
56 TIGR03732 lanti_perm_MutE lant 58.7 1.5E+02 0.0033 27.3 16.5 72 357-428 75-150 (241)
57 TIGR01248 drrC daunorubicin re 55.8 1.3E+02 0.0027 25.5 9.6 52 178-231 15-66 (152)
58 PF10766 DUF2592: Protein of u 55.6 22 0.00047 22.3 3.2 22 290-311 4-25 (41)
59 PF13829 DUF4191: Domain of un 55.6 1.6E+02 0.0035 26.8 10.2 47 96-142 4-50 (224)
60 PF13829 DUF4191: Domain of un 52.8 1.8E+02 0.0039 26.5 11.9 48 264-311 3-50 (224)
61 PRK11026 ftsX cell division AB 49.3 41 0.00088 32.5 5.9 46 96-141 4-49 (309)
62 COG1511 Predicted membrane pro 44.1 57 0.0012 36.0 6.7 102 357-462 610-711 (780)
63 PF09847 DUF2074: Predicted pe 40.9 4.1E+02 0.009 27.1 15.4 122 96-226 241-362 (449)
64 PF12911 OppC_N: N-terminal TM 39.1 96 0.0021 20.9 5.0 42 278-319 5-47 (56)
65 PF12730 ABC2_membrane_4: ABC- 38.2 2.7E+02 0.0059 24.2 14.4 27 194-220 88-114 (232)
66 COG1113 AnsP Gamma-aminobutyra 38.1 4.5E+02 0.0099 26.8 15.0 164 282-455 11-183 (462)
67 PRK11026 ftsX cell division AB 37.5 66 0.0014 31.0 5.3 45 265-309 4-48 (309)
68 PF10281 Ish1: Putative stress 37.2 69 0.0015 19.9 3.6 30 5-34 6-35 (38)
69 PHA02119 hypothetical protein 37.0 24 0.00052 25.1 1.6 21 5-25 56-78 (87)
70 PF13559 DUF4129: Domain of un 34.8 85 0.0018 22.2 4.5 50 6-60 4-53 (72)
71 PF12911 OppC_N: N-terminal TM 33.0 1.1E+02 0.0025 20.5 4.6 37 109-145 5-42 (56)
72 COG1682 TagG ABC-type polysacc 31.4 4.4E+02 0.0096 24.7 17.5 123 100-228 15-140 (263)
73 TIGR00439 ftsX putative protei 30.0 1E+02 0.0022 29.7 5.3 44 97-140 5-48 (309)
74 PF12760 Zn_Tnp_IS1595: Transp 29.2 48 0.001 21.6 2.0 22 3-24 1-26 (46)
75 PF10011 DUF2254: Predicted me 27.3 6.2E+02 0.013 25.1 12.0 72 368-440 88-162 (371)
76 TIGR03061 pip_yhgE_Nterm YhgE/ 26.0 1.1E+02 0.0024 26.2 4.3 33 111-143 1-36 (164)
77 TIGR00439 ftsX putative protei 25.1 1.2E+02 0.0026 29.3 4.8 45 265-309 4-48 (309)
78 TIGR01190 ccmB heme exporter p 23.6 5.5E+02 0.012 23.2 18.6 110 108-230 1-119 (211)
79 COG4279 Uncharacterized conser 20.6 82 0.0018 29.0 2.4 29 5-33 101-143 (266)
80 PF12725 DUF3810: Protein of u 20.5 2.8E+02 0.006 26.9 6.3 35 188-222 2-36 (318)
No 1
>PLN03140 ABC transporter G family member; Provisional
Probab=100.00 E-value=4.4e-55 Score=488.56 Aligned_cols=450 Identities=20% Similarity=0.361 Sum_probs=384.9
Q ss_pred CcchhHHHHHHhhcCCCCCCCCCchHHHHHHhccCCCchh----hhH---HHHHHHHHHhhcChHHHHHHHhhhhhhhhH
Q psy1567 2 FPQQQTFFQFGLRLGAACPSNYNPADYFIQLLAVVPSREE----TCR---NTIEMVCDTFDRSEYGIKLAQATELRGDLQ 74 (463)
Q Consensus 2 ~~~~~~~~~yF~~~G~~cP~~~NpADf~ldv~~~~~~~~~----~~~---~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~ 74 (463)
+|+.+++++||+++||+||+++|||||++|+++.+...+. ..+ .+++++++.|++++.+++..++.+.+.+..
T Consensus 419 ~G~~~~~~~yF~~lGf~cP~~~n~ADFl~~v~s~~~~~~~~~~~~~p~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~ 498 (1470)
T PLN03140 419 QGPRDHILEFFESCGFKCPERKGTADFLQEVTSKKDQEQYWADRNKPYRYISVSEFAERFKSFHVGMQLENELSVPFDKS 498 (1470)
T ss_pred eCCHHHHHHHHHHcCCCCCCCCChHHHHHHhcCchhhhhhhhccCCccccCCHHHHHHHHHhcHHHHHHHHHHhhhhhhh
Confidence 6899999999999999999999999999999885432111 111 457899999999988877665544321110
Q ss_pred HHHhhCCCcccccCCCCCCCCCCCCcHHHHHHHHHHHhhHhhccChhHHHHHHHHHHHHHHHHHHHHhCCCCCc---ccc
Q psy1567 75 AKAILGGKMDIFSNGNVANRSPYKANWWTQFKAVLWRSWLSVRKDPTLMKVRLLQTLMVSIMIGLIYFGQNLDQ---DGV 151 (463)
Q Consensus 75 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~L~~R~~~~~~Rn~~~~~~r~~~~~~~ali~g~~f~~~~~~~---~~~ 151 (463)
.. .......+++..+++.|++.|++|.++..+||+..+..|+++.+++|+++|++|++++.++ .+.
T Consensus 499 -------~~----~~~~~~~~~y~~s~~~q~~~~~~R~~~~~~Rd~~~~~~r~~~~ii~ali~GsvF~~~~~~~~~~~~~ 567 (1470)
T PLN03140 499 -------QS----HKAALVFSKYSVPKMELLKACWDKEWLLMKRNAFVYVFKTVQIIIVAAIASTVFLRTEMHTRNEEDG 567 (1470)
T ss_pred -------hc----ccccccCCCCcCCHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCcchhH
Confidence 00 0112234568899999999999999999999999999999999999999999999997553 345
Q ss_pred chhhhHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHhhcCCCcchhHHHHHHHhHHhhHHHHHHHHHHHHHhhcccccchh
Q psy1567 152 MNINGALFICLTNMTFQNVFAVISVFCSELPLFMREHQNGMYRVDVYFLCKTLAEVPIFLAIPVIFTSVMYYMVHLNPIF 231 (463)
Q Consensus 152 ~~~~g~~f~~~~~~~~~~~~~~i~~f~~er~i~~rE~~~g~Y~~~~Y~~a~~~~~~p~~~~~~~v~~~i~Y~~~gl~~~~ 231 (463)
+.+.|.+||.+++.++.++ ..++.++.||++|.||+.+++|++++|++|++++|+|+.++.+++|.+|+|||+|+++++
T Consensus 568 ~~~~g~lff~~l~~~~~~~-~~l~~~~~~r~vf~ker~~~~Y~~~ay~la~~l~~iP~~~i~~~if~~I~Y~m~Gl~~~~ 646 (1470)
T PLN03140 568 ALYIGALLFSMIINMFNGF-AELALMIQRLPVFYKQRDLLFHPPWTFTLPTFLLGIPISIIESVVWVVITYYSIGFAPEA 646 (1470)
T ss_pred HHHHHHHHHHHHHHHHHHH-HHHHHHHhccchhHHhhhccCcCHHHHHHHHHHHHHHHHHHHHHHHHhHHhhhcCCCCch
Confidence 6788999999998888875 568899999999999999999999999999999999999999999999999999999999
Q ss_pred hhHHHHHHHHHHHHHHh---------------------------------------------------------------
Q psy1567 232 SRFLTATLIITMAKAIL--------------------------------------------------------------- 248 (463)
Q Consensus 232 ~~f~~f~l~l~l~~~i~--------------------------------------------------------------- 248 (463)
++||.|++++++++.++
T Consensus 647 ~~Ff~f~l~~~l~~~~~~~l~~~i~a~~~~~~~A~~~~~~~~l~~~lf~Gf~i~~~~ip~w~~W~~yisp~~Ya~eal~~ 726 (1470)
T PLN03140 647 SRFFKQLLLVFLIQQMAAGIFRLIASVCRTMIIANTGGALVLLLVFLLGGFILPKGEIPNWWEWAYWVSPLSYGFNALAV 726 (1470)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHccceechHhCchHHHHHHHhCHHHHHHHHHHH
Confidence 99999999987754100
Q ss_pred -------------c------C-----------------------------------------------------------
Q psy1567 249 -------------G------G----------------------------------------------------------- 250 (463)
Q Consensus 249 -------------~------~----------------------------------------------------------- 250 (463)
. |
T Consensus 727 NEf~~~~~~~~~~~~~~~~~G~~~L~~~g~~~~~~~~w~~~~iL~~~~v~f~~l~~l~L~~~~~~~~~~~~~~~~~~~~~ 806 (1470)
T PLN03140 727 NEMFAPRWMNKMASDNSTRLGTAVLNIFDVFTDKNWYWIGVGALLGFTILFNVLFTLALTYLNPLGKKQAIISEETAEEM 806 (1470)
T ss_pred HhccCccccCcccCCCCcccHHHHHHhcCcCccccchhhhHHHHHHHHHHHHHHHHHHHHhcCccCCCCccccccchhhh
Confidence 0 0
Q ss_pred -----------------c----------------------------------c-------c-cccC--------------
Q psy1567 251 -----------------K----------------------------------M-------D-IFSN-------------- 257 (463)
Q Consensus 251 -----------------~----------------------------------~-------~-~~~~-------------- 257 (463)
. + + .|++
T Consensus 807 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~y~v~~~~~~~~~ 886 (1470)
T PLN03140 807 EGEEDSIPRSLSSADGNNTREVAIQRMSNPEGLSKNRDSSLEAANGVAPKRGMVLPFTPLAMSFDDVNYFVDMPAEMKEQ 886 (1470)
T ss_pred hccccccccccccccccccccccccccccccccccccccccccccccccccccccCCCcceEEEEEEEEEEccCcccccc
Confidence 0 0 0 0000
Q ss_pred ----CC--C-----------------------------------------------------------------------
Q psy1567 258 ----GN--V----------------------------------------------------------------------- 260 (463)
Q Consensus 258 ----~~--~----------------------------------------------------------------------- 260 (463)
++ .
T Consensus 887 ~~~~~~~~iL~~vs~~i~~Gel~aL~G~sGaGKTTLL~~LaG~~~~g~~~G~I~inG~~~~~~~~~~~igyv~Q~d~~~~ 966 (1470)
T PLN03140 887 GVTEDRLQLLREVTGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIRISGFPKKQETFARISGYCEQNDIHSP 966 (1470)
T ss_pred ccCcCCceEeeCcEEEEECCeEEEEECCCCCCHHHHHHHHcCCCCCCcccceEEECCccCChHHhhhheEEEccccccCC
Confidence 00 0
Q ss_pred --------------------------------------------C------C----------------------------
Q psy1567 261 --------------------------------------------A------N---------------------------- 262 (463)
Q Consensus 261 --------------------------------------------~------~---------------------------- 262 (463)
. +
T Consensus 967 ~lTV~E~L~~~a~lr~~~~~~~~~~~~~v~~vl~~lgL~~~~~~~vg~~~~~~LSgGerkRvsIa~aL~~~P~lL~LDEP 1046 (1470)
T PLN03140 967 QVTVRESLIYSAFLRLPKEVSKEEKMMFVDEVMELVELDNLKDAIVGLPGVTGLSTEQRKRLTIAVELVANPSIIFMDEP 1046 (1470)
T ss_pred CCcHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHCCChhHhCCccCCCCCCCcCHHHHHHHHHHHHHhhCCCEEEEeCC
Confidence 0 0
Q ss_pred --------------------------------------------------------------------------------
Q psy1567 263 -------------------------------------------------------------------------------- 262 (463)
Q Consensus 263 -------------------------------------------------------------------------------- 262 (463)
T Consensus 1047 TsgLD~~~a~~v~~~L~~l~~~g~tVI~t~Hq~~~~i~~~~D~vllL~~gG~~v~~G~~~~~~~~~~~yF~~~~g~~~~p 1126 (1470)
T PLN03140 1047 TSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLMKRGGQVIYSGPLGRNSHKIIEYFEAIPGVPKIK 1126 (1470)
T ss_pred CCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCCCHHHHHhCCEEEEEcCCCEEEEECCcccccccHHHHHHhcCCCCCCC
Confidence
Q ss_pred ---------------------------------------------------------CCCCCCCHHHHHHHHHHHhhhhh
Q psy1567 263 ---------------------------------------------------------RSPYKANWWTQFKAVLWRSWLSV 285 (463)
Q Consensus 263 ---------------------------------------------------------~~~~~~s~~~q~~~l~~R~~~~~ 285 (463)
++++++|++.|++++++|+++..
T Consensus 1127 ~~~NPAd~~l~v~~~~~~~~~~~d~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~Q~~~l~~R~~~~~ 1206 (1470)
T PLN03140 1127 EKYNPATWMLEVSSLAAEVKLGIDFAEHYKSSSLYQRNKALVKELSTPPPGASDLYFATQYSQSTWGQFKSCLWKQWWTY 1206 (1470)
T ss_pred CCCCchhhhhhhhcccccccccchHHHHHhccHHHHHHHHHHHHhccCCCCccccccCccccCCHHHHHHHHHHHHHHHH
Confidence 01246789999999999999999
Q ss_pred ccChhhHHHHHHHHHHHHHHHHHHhcCCCCCh---hhhhhhhHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHhhCCCC
Q psy1567 286 RKDPTLMKVRLLQTLMVSIMIGLIYFGQNLDQ---DGVMNINGALFICLTNMTFQNVFAVISVFCSELPLFMREHQNGMY 362 (463)
Q Consensus 286 ~R~~~~~~~~l~~~~~~~~i~g~~f~~~~~~~---~~~~~~~~~lf~~~~~~~~~~~~~~i~~~~~er~~~~rE~~~~~y 362 (463)
||||.++..|+++.+++++++|++|+++++++ .+++++.|++|+++++.++.++.++++.+..||.+++||+++|+|
T Consensus 1207 ~R~p~~~~~r~~~~i~~al~~G~~f~~~~~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~p~~~~eR~vf~REr~~~~Y 1286 (1470)
T PLN03140 1207 WRSPDYNLVRFFFTLAAALMVGTIFWKVGTKRSNANDLTMVIGAMYAAVLFVGINNCSTVQPMVAVERTVFYRERAAGMY 1286 (1470)
T ss_pred HCCHhHHHHHHHHHHHHHHHHHHHhhCCCCCcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCc
Confidence 99999999999999999999999999997664 567788999999999988988888889999999999999999999
Q ss_pred chhHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCChhhHHHhhhHHH
Q psy1567 363 RVDVYFLCKTLAEVPIFLAIPVIFTSVMYYMVHLNPIFSRFLTATLIITMVSTVATSFGYLISCISSSVSVALSIGPPVI 442 (463)
Q Consensus 363 ~~~~y~la~~~~~l~~~~~~~~i~~~i~y~~~g~~~~~~~f~~~~l~~~l~~~~~~~lg~~i~~~~~~~~~a~~~~~~~~ 442 (463)
++.+|++|++++|+|+.++++++|.+|+|||+|+++++..|+.|+++++++.+++.++|+++++++||.+.|..++++++
T Consensus 1287 ~~~~y~la~~l~eiP~~~~~~~if~~i~Y~m~Gl~~~~~~f~~~~~~~~l~~~~~~~~g~~~~a~~p~~~~A~~~~~~~~ 1366 (1470)
T PLN03140 1287 SALPYAIAQVVCEIPYVLIQTTYYTLIVYAMVAFEWTAAKFFWFYFISFFSFLYFTYYGMMTVSLTPNQQVAAIFAAAFY 1366 (1470)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCcHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhhhccccCCCcccccC
Q psy1567 443 IPFLLFGGFFLNAGLMGVAIF 463 (463)
Q Consensus 443 ~~~~l~sG~~i~~~~lP~~l~ 463 (463)
.++++|+|+++|.++||+||+
T Consensus 1367 ~~~~lf~Gf~i~~~~iP~~~~ 1387 (1470)
T PLN03140 1367 GLFNLFSGFFIPRPKIPKWWV 1387 (1470)
T ss_pred HHHHHHeeeccChHHCchHHH
Confidence 999999999999999999985
No 2
>TIGR00956 3a01205 Pleiotropic Drug Resistance (PDR) Family protein.
Probab=100.00 E-value=1.9e-55 Score=493.43 Aligned_cols=459 Identities=19% Similarity=0.318 Sum_probs=387.9
Q ss_pred CcchhHHHHHHhhcCCCCCCCCCchHHHHHHhccCC-----CchhhhHHHHHHHHHHhhcChHHHHHHHhhhhhhhhHH-
Q psy1567 2 FPQQQTFFQFGLRLGAACPSNYNPADYFIQLLAVVP-----SREETCRNTIEMVCDTFDRSEYGIKLAQATELRGDLQA- 75 (463)
Q Consensus 2 ~~~~~~~~~yF~~~G~~cP~~~NpADf~ldv~~~~~-----~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~- 75 (463)
+|+++++.+||+++||+||++.|||||++|+++.+. +.+...+.+++++++.|++|+.+++..++.+...+...
T Consensus 292 ~G~~~~~~~yF~~lG~~~p~~~n~aDfl~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~ 371 (1394)
T TIGR00956 292 FGPADKAKQYFEKMGFKCPDRQTTADFLTSLTSPAERQIKPGYEKKVPRTPQEFETYWRNSPEYAQLMKEIDEYLDRCSE 371 (1394)
T ss_pred ECCHHHHHHHHHHcCCCCCCCCChHHHHHhccChhhhhccccccccCCCCHHHHHHHHHcCHHHHHHHHHHHHHhhhccc
Confidence 589999999999999999999999999999987542 22333456789999999999988776665543211100
Q ss_pred --H--HhhCCCcccccCCCCCCCCCCCCcHHHHHHHHHHHhhHhhccChhHHHHHHHHHHHHHHHHHHHHhCCCCCcccc
Q psy1567 76 --K--AILGGKMDIFSNGNVANRSPYKANWWTQFKAVLWRSWLSVRKDPTLMKVRLLQTLMVSIMIGLIYFGQNLDQDGV 151 (463)
Q Consensus 76 --~--~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~L~~R~~~~~~Rn~~~~~~r~~~~~~~ali~g~~f~~~~~~~~~~ 151 (463)
. .....+.. ..........+++.|+++|+++|++|++++.+|||..++.|+++++++|+++|++|++++++++++
T Consensus 372 ~~~~~~~~~~~~~-~~~~~~~~~~~~~~s~~~Q~~~l~~R~~~~~~Rd~~~~~~r~~~~ii~~li~G~~F~~~~~~~~~~ 450 (1394)
T TIGR00956 372 SDTKEAYRESHVA-KQSKRTRPSSPYTVSFSMQVKYCLARNFLRMKGNPSFTLFMVFGNIIMALILSSVFYNLPKNTSDF 450 (1394)
T ss_pred hhhHHHHHHHHHh-hhcccccCCCCCcCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHhhcCCCCCchhH
Confidence 0 00000000 001112334568899999999999999999999999999999999999999999999999999999
Q ss_pred chhhhHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHhhcCCCcchhHHHHHHHhHHhhHHHHHHHHHHHHHhhcccccchh
Q psy1567 152 MNINGALFICLTNMTFQNVFAVISVFCSELPLFMREHQNGMYRVDVYFLCKTLAEVPIFLAIPVIFTSVMYYMVHLNPIF 231 (463)
Q Consensus 152 ~~~~g~~f~~~~~~~~~~~~~~i~~f~~er~i~~rE~~~g~Y~~~~Y~~a~~~~~~p~~~~~~~v~~~i~Y~~~gl~~~~ 231 (463)
++|.|++|+++++.++.++.. +..+..||++|.||+.+|+|++++|++|++++|+|+.++.+++|.+|+|||+|++.++
T Consensus 451 ~~r~g~lf~~~~~~~~~~~~~-i~~~~~eR~i~~re~~~~~Y~~~ay~la~~l~~iP~~~~~~~if~~i~Yfm~gl~~~~ 529 (1394)
T TIGR00956 451 YSRGGALFFAILFNAFSSLLE-IASMYEARPIVEKHRKYALYHPSADAIASIISEIPFKIIESVVFNIILYFMVNFRRTA 529 (1394)
T ss_pred HHHHHHHHHHHHHHHHHHHHH-HHHHHhcCcceeeeccccccCHHHHHHHHHHHHHHHHHHHHHHHHhhhEEcCCCcccH
Confidence 999999999999999998644 6777889999999999999999999999999999999999999999999999999999
Q ss_pred hhHHHHHHHHHHHHH-----------------------------------------------------------------
Q psy1567 232 SRFLTATLIITMAKA----------------------------------------------------------------- 246 (463)
Q Consensus 232 ~~f~~f~l~l~l~~~----------------------------------------------------------------- 246 (463)
++|+.|+++++++..
T Consensus 530 ~~Ff~f~l~~~l~~~~~~~~~~~i~a~~~~~~~A~~~~~~~~~~~~lf~Gf~i~~~~mp~~~~W~~yisp~~yafeal~~ 609 (1394)
T TIGR00956 530 GRFFFYLLILFICTLAMSHLFRSIGAVTKTLSEAMTPAAILLLALSIYTGFAIPRPSMLGWSKWIYYVNPLAYAFESLMV 609 (1394)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHcccccChhhccHHHHHHHHcCHHHHHHHHHHH
Confidence 999999998776530
Q ss_pred ---------Hh---------------cCcc------------c---------------cc--------------------
Q psy1567 247 ---------IL---------------GGKM------------D---------------IF-------------------- 255 (463)
Q Consensus 247 ---------i~---------------~~~~------------~---------------~~-------------------- 255 (463)
+. +..| + .|
T Consensus 610 nef~~~~~~C~~~~p~g~~y~~~~~~~~~C~~~g~~~g~~~~~G~~~L~~~~~~~~~~~w~n~gil~~~~v~f~~~~~l~ 689 (1394)
T TIGR00956 610 NEFHGRRFECSQYVPSGGGYDNLGVTNKVCTVVGAEPGQDYVDGDDYLKLSFQYYNSHKWRNFGIIIGFTVFFFFVYILL 689 (1394)
T ss_pred hhhcCCcccccccccCCCCCCCCCccCccccCCCCcCCcccccHHHHHHhcCCcccchhhHHHHHHHHHHHHHHHHHHHH
Confidence 00 0000 0 00
Q ss_pred -------------------------------------------------------------------------cC-----
Q psy1567 256 -------------------------------------------------------------------------SN----- 257 (463)
Q Consensus 256 -------------------------------------------------------------------------~~----- 257 (463)
++
T Consensus 690 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~nl~~~~ 769 (1394)
T TIGR00956 690 TEFNKGAKQKGEILVFRRGSLKRAKKAGETSASNKNDIEAGEVLGSTDLTDESDDVNDEKDMEKESGEDIFHWRNLTYEV 769 (1394)
T ss_pred HHhccccCCCCceEeeccccccchhhcccccccccccccccccCCCCccccccccccccccccccCCCceEEEEeeEEEe
Confidence 00
Q ss_pred ----CCC--CC---------------------------------------------------------------------
Q psy1567 258 ----GNV--AN--------------------------------------------------------------------- 262 (463)
Q Consensus 258 ----~~~--~~--------------------------------------------------------------------- 262 (463)
++. ++
T Consensus 770 ~~~~~~~~iL~~vs~~i~~Ge~~aI~G~sGaGKSTLL~~Lag~~~~g~~~~G~I~i~G~~~~~~~~~~i~yv~Q~~~~~~ 849 (1394)
T TIGR00956 770 KIKKEKRVILNNVDGWVKPGTLTALMGASGAGKTTLLNVLAERVTTGVITGGDRLVNGRPLDSSFQRSIGYVQQQDLHLP 849 (1394)
T ss_pred cCCCCCcEeeeCCEEEEECCEEEEEECCCCCCHHHHHHHHhCCCCCCCcceeEEEECCEECChhhhcceeeecccccCCC
Confidence 000 00
Q ss_pred --------------------------------------------------------------------------------
Q psy1567 263 -------------------------------------------------------------------------------- 262 (463)
Q Consensus 263 -------------------------------------------------------------------------------- 262 (463)
T Consensus 850 ~~Tv~E~L~~~a~l~~~~~~~~~~~~~~v~~~l~~l~L~~~~d~~v~~~~~~LSgGqrqRl~Ia~aL~~~P~~iLlLDEP 929 (1394)
T TIGR00956 850 TSTVRESLRFSAYLRQPKSVSKSEKMEYVEEVIKLLEMESYADAVVGVPGEGLNVEQRKRLTIGVELVAKPKLLLFLDEP 929 (1394)
T ss_pred CCCHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHcCChhhCCCeeCCCCCCCCHHHhhHHHHHHHHHcCCCeEEEEcCC
Confidence
Q ss_pred --------------------------------------------------------------------------------
Q psy1567 263 -------------------------------------------------------------------------------- 262 (463)
Q Consensus 263 -------------------------------------------------------------------------------- 262 (463)
T Consensus 930 TsgLD~~~~~~i~~~L~~la~~g~tvI~t~H~~~~~~~~~~D~vl~L~~GG~iv~~G~~~~~~~~~~~yf~~~G~~~~p~ 1009 (1394)
T TIGR00956 930 TSGLDSQTAWSICKLMRKLADHGQAILCTIHQPSAILFEEFDRLLLLQKGGQTVYFGDLGENSHTIINYFEKHGAPKCPE 1009 (1394)
T ss_pred CCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCCHHHHHhcCEEEEEcCCCEEEEECCcccccchHHHHHHhcCCCCCCC
Confidence
Q ss_pred ------------------C-----------------------------------------CCCCCCHHHHHHHHHHHhhh
Q psy1567 263 ------------------R-----------------------------------------SPYKANWWTQFKAVLWRSWL 283 (463)
Q Consensus 263 ------------------~-----------------------------------------~~~~~s~~~q~~~l~~R~~~ 283 (463)
. +++++|+++|+++|++|.++
T Consensus 1010 ~~NpAd~~ldvi~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~q~~~l~~R~~~ 1089 (1394)
T TIGR00956 1010 DANPAEWMLEVIGAAPGAHANQDYHEVWRNSSEYQAVKNELDRLEAELSKAEDDNDPDALSKYAASLWYQFKLVLWRTFQ 1089 (1394)
T ss_pred CCCHHHHHHHHhhcccccchhccHHHHHhcCHHHHHHHHHHHHhhcccccCccccccccccccCCCHHHHHHHHHHHHHH
Confidence 0 02457899999999999999
Q ss_pred hhccChhhHHHHHHHHHHHHHHHHHHhcCCCCChhhhhhhhHHHHHHHHHHHHHHHHHHHHHhhhhhhHH-HHHhhCCCC
Q psy1567 284 SVRKDPTLMKVRLLQTLMVSIMIGLIYFGQNLDQDGVMNINGALFICLTNMTFQNVFAVISVFCSELPLF-MREHQNGMY 362 (463)
Q Consensus 284 ~~~R~~~~~~~~l~~~~~~~~i~g~~f~~~~~~~~~~~~~~~~lf~~~~~~~~~~~~~~i~~~~~er~~~-~rE~~~~~y 362 (463)
..+|||.++..|+++.+++|+++|++|+++++++.+++++.|++|+.++...+.. ...++.++.||.++ .||+++|+|
T Consensus 1090 ~~~R~~~~~~~r~~~~i~~~l~~G~~f~~~~~~~~~i~~~~g~~f~~~~~~~~~~-~~~~~~f~~~r~~~~~RE~~s~~Y 1168 (1394)
T TIGR00956 1090 QYWRTPDYLYSKFFLTIFAALFIGFTFFKVGTSLQGLQNQMFAVFMATVLFNPLI-QQYLPPFVAQRDLYEVRERPSRTF 1168 (1394)
T ss_pred HHhcCHHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHHHH-HHhhhhHHHHHHHHHHHHhhcCCC
Confidence 9999999999999999999999999999999999999999999999888776663 46678888888886 999999999
Q ss_pred chhHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCcchHHH-------HHHHHHHHHHHHHHHHHHHHHHHHhcCChhhHH
Q psy1567 363 RVDVYFLCKTLAEVPIFLAIPVIFTSVMYYMVHLNPIFSR-------FLTATLIITMVSTVATSFGYLISCISSSVSVAL 435 (463)
Q Consensus 363 ~~~~y~la~~~~~l~~~~~~~~i~~~i~y~~~g~~~~~~~-------f~~~~l~~~l~~~~~~~lg~~i~~~~~~~~~a~ 435 (463)
++.+|++|++++|+|+.++.+++|.+|+||++|+++++.. |+.+++++++..+++.++|++++++++|...|+
T Consensus 1169 ~~~~y~~a~~l~elP~~~~~~~if~~i~Y~~~Gl~~~~~~~~~~~~~f~~~~~~~~~~~~~~~s~g~~~~~~~~~~~~a~ 1248 (1394)
T TIGR00956 1169 SWLAFIAAQITVEIPYNLVAGTIFFFIWYYPVGFYWNASKTGQVHERGVLFWLLSTMFFLYFSTLGQMVISFNPNADNAA 1248 (1394)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHhheeecccccCcccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHCCcHHHHH
Confidence 9999999999999999999999999999999999887755 999999999999999999999999999999999
Q ss_pred HhhhHHHHHHHHhhhccccCCCcccccC
Q psy1567 436 SIGPPVIIPFLLFGGFFLNAGLMGVAIF 463 (463)
Q Consensus 436 ~~~~~~~~~~~l~sG~~i~~~~lP~~l~ 463 (463)
.++++++.++++|||+++|.+++|+||+
T Consensus 1249 ~~~~~~~~~~~lf~G~~~~~~~ip~~~~ 1276 (1394)
T TIGR00956 1249 VLASLLFTMCLSFCGVLAPPSRMPGFWI 1276 (1394)
T ss_pred HHHHHHHHHHHHhccccCChhHCcHHHh
Confidence 9999999999999999999999999975
No 3
>KOG0065|consensus
Probab=100.00 E-value=9.6e-53 Score=442.64 Aligned_cols=450 Identities=20% Similarity=0.332 Sum_probs=400.6
Q ss_pred CcchhHHHHHHhhcCCCCCCCCCchHHHHHHhccCCC-------chhhhHHHHHHHHHHhhcChHHHHHHHhhhhhhhhH
Q psy1567 2 FPQQQTFFQFGLRLGAACPSNYNPADYFIQLLAVVPS-------REETCRNTIEMVCDTFDRSEYGIKLAQATELRGDLQ 74 (463)
Q Consensus 2 ~~~~~~~~~yF~~~G~~cP~~~NpADf~ldv~~~~~~-------~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~ 74 (463)
+|+.+++++||+++||.||+++++|||+.++.+..+. ........++++.+.|++++.+.+..++.+.+.+..
T Consensus 343 ~Gp~d~~~~yFe~~Gf~cP~r~~~ADfLt~vts~k~~~~~~~~~~~~~~~~~~~ef~~~~~~s~~~~~l~~~l~~~~~~~ 422 (1391)
T KOG0065|consen 343 QGPRDEVLPYFEDMGFKCPPRKGTADFLTEVTSKKDQEQYWNKRSKPYPYTSVSEFAEYFLNSEDYAKLKKELSKPYDKS 422 (1391)
T ss_pred eccHHHHHHHHHhcCccCCCccCHHHHHHHhhcCccccccccccCCCcccCCHHHHHHHHhcchhhHHHHHHhcchhhhh
Confidence 6999999999999999999999999999999983322 112233456999999999999999988877665433
Q ss_pred HHHhhCCCcccccCCCCCCCCCCCCcHHHHHHHHHHHhhHhhccChhHHHHHHHHHHHHHHHHHHHHhCCC-CCccccch
Q psy1567 75 AKAILGGKMDIFSNGNVANRSPYKANWWTQFKAVLWRSWLSVRKDPTLMKVRLLQTLMVSIMIGLIYFGQN-LDQDGVMN 153 (463)
Q Consensus 75 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~L~~R~~~~~~Rn~~~~~~r~~~~~~~ali~g~~f~~~~-~~~~~~~~ 153 (463)
. ..+...+.+++..+.|.|++.|++|.+..++||..++..+.++.+++|+++|++|++++ .+..+...
T Consensus 423 k-----------~~~~al~s~~y~v~~~~qvk~c~~R~f~l~k~n~~~~~~~~~~~~i~ali~gslF~~~~~~t~~~~~~ 491 (1391)
T KOG0065|consen 423 K-----------KHKAALVSSKYSVPYWEQVKACTIREFLLMKRNYFYYVFKTVQLVIQALITGSLFYRTPMSTTSGGYS 491 (1391)
T ss_pred h-----------ccchhhcCCceeccHHHHHHHHHHHHHHHHhCCceEEEhHHHHHHHHHHHHhhheeeccCcccccchh
Confidence 1 12234566789999999999999999999999999999999999999999999999999 77889999
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHhhcCCCcchhHHHHHHHhHHhhHHHHHHHHHHHHHhhcccccchhhh
Q psy1567 154 INGALFICLTNMTFQNVFAVISVFCSELPLFMREHQNGMYRVDVYFLCKTLAEVPIFLAIPVIFTSVMYYMVHLNPIFSR 233 (463)
Q Consensus 154 ~~g~~f~~~~~~~~~~~~~~i~~f~~er~i~~rE~~~g~Y~~~~Y~~a~~~~~~p~~~~~~~v~~~i~Y~~~gl~~~~~~ 233 (463)
+.|.+||.+++.++.++.. ++.....|++++|+|...+|++++|.++..++++|..++.+++|.+|.||++|+.+++++
T Consensus 492 ~~~~lffsll~~~f~~laE-i~~~~~~~pv~~Khr~~~fY~p~A~al~s~l~~~P~~~i~~~vf~iI~Yfl~gl~~~A~r 570 (1391)
T KOG0065|consen 492 RGGALFFALLFNLFNGLAE-IALTFQRLPVFYKHRDLSFYPPWAEALASTLLKIPSSFIESVVFVIITYFLIGLKRNAGR 570 (1391)
T ss_pred hhhHHHHHHHHHHHHhHHH-HHHHHhhcchHHHhhcccccChHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhcCCcchHH
Confidence 9999999999999998755 677789999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHH------------------------------------------------------------------
Q psy1567 234 FLTATLIITMAKAI------------------------------------------------------------------ 247 (463)
Q Consensus 234 f~~f~l~l~l~~~i------------------------------------------------------------------ 247 (463)
||.+++++++.+..
T Consensus 571 FF~~fL~lf~~~~~~s~lFr~ia~l~~t~~~An~~g~~~~L~i~m~~Gf~Ip~~~m~~W~~Wi~yinPl~Y~fesl~~NE 650 (1391)
T KOG0065|consen 571 FFIQFLFLFLCQFCMSGLFRFIASLSRTLSIANLIGGILLLVLFMYGGFVIPKKDMPPWFRWIAYINPLMYAFESLMSNE 650 (1391)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHhhHhHHHHHHHHHHcceeeeccccchHHHHHHHHCHHHHHHHHHHHhh
Confidence 99999999887521
Q ss_pred --------h------------cCcc-------------------------c--cc-------------------------
Q psy1567 248 --------L------------GGKM-------------------------D--IF------------------------- 255 (463)
Q Consensus 248 --------~------------~~~~-------------------------~--~~------------------------- 255 (463)
+ +..| . .|
T Consensus 651 F~~~~~~c~p~gp~y~n~~~~~~~c~~~~~~~G~~~v~g~~~l~~~~~y~~~~~Wr~~gillgf~v~f~~~~~ia~~yl~ 730 (1391)
T KOG0065|consen 651 FHGRRWPCSPSGPAYDNISIENKVCAATGATLGNDYVSGRDYLKVQYQYEYKWYWRNFGILLGFTVFFNFVFLIALEYLK 730 (1391)
T ss_pred hhcccCCCCCCCCcccccccccccchhhccccCceEEecccccccccccccceeEeehhHHHHHHHHHHHHHHHHHHhcC
Confidence 0 0000 0 01
Q ss_pred --------------------c-C----------------C-C-C------------------------------------
Q psy1567 256 --------------------S-N----------------G-N-V------------------------------------ 260 (463)
Q Consensus 256 --------------------~-~----------------~-~-~------------------------------------ 260 (463)
. + + + +
T Consensus 731 p~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~V~~w~dl~~~~~~qG~~~qLL~~V 810 (1391)
T KOG0065|consen 731 PLKKSGAILVFKKGKEKKKVKSAGSSSEIEKLDDSSHQEKNKMVLPFTPLSLTFKDVFYWVDLPYEMPIQGGTRQLLNNV 810 (1391)
T ss_pred ccccccceeeeccchhhhcchhccccccccccccccccccccccCCCccccccccceEEEEeCCccccccccceEhhhcC
Confidence 0 0 0 0 0
Q ss_pred ------------------CC------------------------------------------------------------
Q psy1567 261 ------------------AN------------------------------------------------------------ 262 (463)
Q Consensus 261 ------------------~~------------------------------------------------------------ 262 (463)
.|
T Consensus 811 ~G~~kPG~LTALMG~SGAGKTTLLdvLA~R~t~G~I~Gdi~i~G~p~~q~tF~R~~GYvqQ~DiH~~~~TVrESL~fSA~ 890 (1391)
T KOG0065|consen 811 SGAFKPGVLTALMGESGAGKTTLLDVLAGRKTGGYIEGDILISGFPKDQETFARVSGYVEQQDIHSPELTVRESLRFSAA 890 (1391)
T ss_pred ceEecCCceeehhcCCCCchHHHHHHHhcCcccceEEeEEEECCeeCchhhhccccceeecccccCcccchHHHHHHHHH
Confidence 00
Q ss_pred --------------------------------------------------------------------------------
Q psy1567 263 -------------------------------------------------------------------------------- 262 (463)
Q Consensus 263 -------------------------------------------------------------------------------- 262 (463)
T Consensus 891 LRlp~~v~~~ek~~yVe~Vi~lleL~~~~daiVG~~G~GLs~eQRKrLTIgVELvA~P~~ilFLDEPTSGLDsqaA~~i~ 970 (1391)
T KOG0065|consen 891 LRLPKEVSDEEKYEYVEEVIELLELKEYADALVGLPGSGLSTEQRKRLTIGVELVANPSSILFLDEPTSGLDSQAAAIVM 970 (1391)
T ss_pred HcCCCcCCHHHHHHHHHHHHHHhCchhhhhhhccCCCCCCCHHHhceeeEEEEEecCCceeEEecCCCCCccHHHHHHHH
Confidence
Q ss_pred --------------------------------------------------------------------------------
Q psy1567 263 -------------------------------------------------------------------------------- 262 (463)
Q Consensus 263 -------------------------------------------------------------------------------- 262 (463)
T Consensus 971 ~~lrkla~tGqtIlCTIHQPS~~ife~FD~LLLLkrGGqtVY~G~lG~~s~~li~YFes~~~~~~~~~~NPA~~mLevi~ 1050 (1391)
T KOG0065|consen 971 RFLRKLADTGQTILCTIHQPSIDIFEAFDELLLLKRGGQTVYFGPLGENSSKLIEYFESIGGVKCISDENPAEWMLEVIG 1050 (1391)
T ss_pred HHHHHHHhcCCeEEEEecCCcHHHHHHHhHHHHHhcCCeEEEecCcccccHHHHHHHHhcCCccCCCCCChHHHHHhhcc
Confidence
Q ss_pred --------------------------------------------CCCCCCCHHHHHHHHHHHhhhhhccChhhHHHHHHH
Q psy1567 263 --------------------------------------------RSPYKANWWTQFKAVLWRSWLSVRKDPTLMKVRLLQ 298 (463)
Q Consensus 263 --------------------------------------------~~~~~~s~~~q~~~l~~R~~~~~~R~~~~~~~~l~~ 298 (463)
+++|++|++.|++.+++|++..+||+|.++..|++.
T Consensus 1051 ~~~~~~~~~D~a~~w~~S~e~k~~~e~v~~l~~~~~~~~~~~~~~~~fa~s~~~Q~k~~l~Rq~~syWRsp~y~~ar~~~ 1130 (1391)
T KOG0065|consen 1051 AGAEASLSVDFAEIWKNSEEYKRNKELVKELSQPPPGFSTDLEFKTRFAQSLWYQFKLCLWRQFLSYWRSPDYLMARFAL 1130 (1391)
T ss_pred cccccccCccHHHHHhccHHHHHHHHHHHHHhcCCccCCcccccccccchhHHHHHHHHHHHHHHHHhCCcHHHHHHHHH
Confidence 123678999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhcCCCCChhhhhhhhHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHhhCCCCchhHHHHHHHHHHHhH
Q psy1567 299 TLMVSIMIGLIYFGQNLDQDGVMNINGALFICLTNMTFQNVFAVISVFCSELPLFMREHQNGMYRVDVYFLCKTLAEVPI 378 (463)
Q Consensus 299 ~~~~~~i~g~~f~~~~~~~~~~~~~~~~lf~~~~~~~~~~~~~~i~~~~~er~~~~rE~~~~~y~~~~y~la~~~~~l~~ 378 (463)
.++.++++|+.|++++.+..+.++..+++|+.+++........+...+..||..++||+++++|+..+|++|++++|+|+
T Consensus 1131 ~i~~gl~iGf~F~~~g~~~q~lqn~m~a~yma~v~~~~~~~~~~~~~v~~e~~y~~RE~~s~mYs~~~~~~aq~~vEiP~ 1210 (1391)
T KOG0065|consen 1131 TIVAGLFIGFTFWKVGHNVQGLQNAMGAAYMATVFSGPNNNQLQQPAVATERLYEYRERASNMYSWTPFALAQVLVEIPY 1210 (1391)
T ss_pred HHHHHHhheeeeeecCCcHHHHHHHHHHHHHHHHHhhhhhhhhhhhHHhhhhhheeeecccCcccHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999998888777667788899999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCChhhHHHhhhHHHHHHHHhhhccccCCCc
Q psy1567 379 FLAIPVIFTSVMYYMVHLNPIFSRFLTATLIITMVSTVATSFGYLISCISSSVSVALSIGPPVIIPFLLFGGFFLNAGLM 458 (463)
Q Consensus 379 ~~~~~~i~~~i~y~~~g~~~~~~~f~~~~l~~~l~~~~~~~lg~~i~~~~~~~~~a~~~~~~~~~~~~l~sG~~i~~~~l 458 (463)
.++++.+|.++.|+++|+.+++.+++++++.+++..++...+|+++.+++||.+.|..+.+.++.....|||+++|...+
T Consensus 1211 ~l~~stl~~~~~Y~~iGF~~~a~~~~~f~~~~~~f~lYf~~~Gmm~~s~tPn~~~Aav~~s~~~s~~~~F~G~l~p~~~i 1290 (1391)
T KOG0065|consen 1211 NLLQSTLFFLITYYPIGFYWTASKFFWFLLFMFIFFLYFTTLGMMLVSLTPNLQTAAVIASLFFSFWNLFSGFLQPRSLI 1290 (1391)
T ss_pred HHHHHHHhheeeeeeccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHhcccccccccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccC
Q psy1567 459 GVAIF 463 (463)
Q Consensus 459 P~~l~ 463 (463)
|+||+
T Consensus 1291 P~fW~ 1295 (1391)
T KOG0065|consen 1291 PKFWI 1295 (1391)
T ss_pred cceee
Confidence 99996
No 4
>PLN03211 ABC transporter G-25; Provisional
Probab=100.00 E-value=2.7e-40 Score=346.40 Aligned_cols=235 Identities=23% Similarity=0.382 Sum_probs=176.6
Q ss_pred CcchhHHHHHHhhcCCCCCCCCCchHHHHHHhccCCCc----hhhhHHHHHHHHHHhhcChHHHHHHHhhhhhhhhHHHH
Q psy1567 2 FPQQQTFFQFGLRLGAACPSNYNPADYFIQLLAVVPSR----EETCRNTIEMVCDTFDRSEYGIKLAQATELRGDLQAKA 77 (463)
Q Consensus 2 ~~~~~~~~~yF~~~G~~cP~~~NpADf~ldv~~~~~~~----~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~ 77 (463)
.|+.+++++||+++|++||++.|||||++|+++.+.+. +.+.....+++.+.|++.... +..+..+...... ..
T Consensus 288 ~G~~~~~~~~f~~~G~~~P~~~NpADf~ldv~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~-~~~~~~~~~~~~~-~~ 365 (659)
T PLN03211 288 FGKGSDAMAYFESVGFSPSFPMNPADFLLDLANGVCQTDGVSEREKPNVKQSLVASYNTLLAP-KVKAAIEMSHFPQ-AN 365 (659)
T ss_pred ECCHHHHHHHHHHCCCCCCCCCCHHHHHHHHcCccccCCCccccccchHHHHHHHHHHhhccH-HHHHHHhhhhhhc-ch
Confidence 58899999999999999999999999999999864321 111222335566666532211 1111111100000 00
Q ss_pred hhCCCcccccCCCCCCCCCCCCcHHHHHHHHHHHhhHhhccChhHHHHHHHHHHHHHHHHHHHHhCCCCCccccchhhhH
Q psy1567 78 ILGGKMDIFSNGNVANRSPYKANWWTQFKAVLWRSWLSVRKDPTLMKVRLLQTLMVSIMIGLIYFGQNLDQDGVMNINGA 157 (463)
Q Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~L~~R~~~~~~Rn~~~~~~r~~~~~~~ali~g~~f~~~~~~~~~~~~~~g~ 157 (463)
........ .......+..+.++|++|+++|++|++++ +||+.....|+++++++|+++|++|++++ ++++++|.|+
T Consensus 366 ~~~~~~~~-~~~~~~~~~~~~~s~~~Q~~~L~~R~~~~-~r~~~~~~~r~~~~i~~~ll~G~lf~~~~--~~~~~~r~g~ 441 (659)
T PLN03211 366 ARFVGSAS-TKEHRSSDRISISTWFNQFSILLQRSLKE-RKHESFNTLRVFQVIAAALLAGLMWWHSD--FRDVQDRLGL 441 (659)
T ss_pred hhhhhccc-ccccccCCCccCCCHHHHHHHHHHHHHHH-HhCcHHHHHHHHHHHHHHHHHHHHHhcCC--HHHHHHHHHH
Confidence 00000000 00001112235678999999999999988 89999999999999999999999999985 6789999999
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhhhHHHHhhcCCCcchhHHHHHHHhHHhhHHHHHHHHHHHHHhhcccccchhhhHHHH
Q psy1567 158 LFICLTNMTFQNVFAVISVFCSELPLFMREHQNGMYRVDVYFLCKTLAEVPIFLAIPVIFTSVMYYMVHLNPIFSRFLTA 237 (463)
Q Consensus 158 ~f~~~~~~~~~~~~~~i~~f~~er~i~~rE~~~g~Y~~~~Y~~a~~~~~~p~~~~~~~v~~~i~Y~~~gl~~~~~~f~~f 237 (463)
+|+++++..+.+...+++.|+.||++|.||+.+|+|++++|++||+++|+|+.++.+++|.+|+|||+|+++++.+|+.|
T Consensus 442 lff~~~~~~~~~~~~~~~~f~~er~v~~rE~~~~~Y~~~~Y~la~~l~elP~~~~~~~if~~i~Y~m~Gl~~~~~~F~~f 521 (659)
T PLN03211 442 LFFISIFWGVFPSFNSVFVFPQERAIFVKERASGMYTLSSYFMARIVGDLPMELILPTIFLTVTYWMAGLKPELGAFLLT 521 (659)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhHHHHHhhhCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhheeEcCCCcCCHHHHHHH
Confidence 99999998888888899999999999999999999999999999999999999999999999999999999876666665
Q ss_pred HHHHH
Q psy1567 238 TLIIT 242 (463)
Q Consensus 238 ~l~l~ 242 (463)
+++++
T Consensus 522 ~li~~ 526 (659)
T PLN03211 522 LLVLL 526 (659)
T ss_pred HHHHH
Confidence 55444
No 5
>TIGR00955 3a01204 The Eye Pigment Precursor Transporter (EPP) Family protein.
Probab=100.00 E-value=1.5e-39 Score=340.97 Aligned_cols=233 Identities=50% Similarity=0.898 Sum_probs=193.8
Q ss_pred CcchhHHHHHHhhcCCCCCCCCCchHHHHHHhccCCCchhhhHHHHHHHHHHhhcChHHHHHHHhhhhhhhhHHHHhhCC
Q psy1567 2 FPQQQTFFQFGLRLGAACPSNYNPADYFIQLLAVVPSREETCRNTIEMVCDTFDRSEYGIKLAQATELRGDLQAKAILGG 81 (463)
Q Consensus 2 ~~~~~~~~~yF~~~G~~cP~~~NpADf~ldv~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~ 81 (463)
+|+++++.+||+++|++||++.|||||++|+++.+++.+....++.+++.+.|++++.+++..+..+...+.+ +
T Consensus 248 ~G~~~~~~~~f~~~g~~~p~~~n~ad~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~------~ 321 (617)
T TIGR00955 248 LGSPDQAVPFFSDLGHPCPENYNPADFYVQVLAVIPGSENESRERIEKICDSFAVSDIGRDMLVNTNLWSGKA------G 321 (617)
T ss_pred ECCHHHHHHHHHHcCCCCCCCCChHHHHHHHhhcCcccccchHHHHHHHHHHHhcchhhHHHHHHhhhhhccc------c
Confidence 6899999999999999999999999999999987766555556677888888888876654433322111000 0
Q ss_pred CcccccCCCCCCCCCCCCcHHHHHHHHHHHhhHhhccChhHHHHHHHHHHHHHHHHHHHHhCCCCCccccchhhhHHHHH
Q psy1567 82 KMDIFSNGNVANRSPYKANWWTQFKAVLWRSWLSVRKDPTLMKVRLLQTLMVSIMIGLIYFGQNLDQDGVMNINGALFIC 161 (463)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~q~~~L~~R~~~~~~Rn~~~~~~r~~~~~~~ali~g~~f~~~~~~~~~~~~~~g~~f~~ 161 (463)
... ......+..++..+++.|+++|++|++++.+|||..+..|+++++++|+++|++|+++++++++++++.|++|++
T Consensus 322 ~~~--~~~~~~~~~~~~~~~~~q~~~l~~R~~~~~~R~~~~~~~~~~~~i~~~li~G~~f~~~~~~~~~~~~~~g~lf~~ 399 (617)
T TIGR00955 322 GLV--KDSENMEGIGYNASWWTQFYALLKRSWLSVLRDPLLLKVRLIQTMMTAILIGLIYLGQGLTQKGVQNINGALFLF 399 (617)
T ss_pred ccc--cccccccccccCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHH
Confidence 000 001111234567899999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhhhhhhHHHHhhcCCCcchhHHHHHHHhHHhhHHHHHHHHHHHHHhhcccccchhhhHHHHHHHH
Q psy1567 162 LTNMTFQNVFAVISVFCSELPLFMREHQNGMYRVDVYFLCKTLAEVPIFLAIPVIFTSVMYYMVHLNPIFSRFLTATLII 241 (463)
Q Consensus 162 ~~~~~~~~~~~~i~~f~~er~i~~rE~~~g~Y~~~~Y~~a~~~~~~p~~~~~~~v~~~i~Y~~~gl~~~~~~f~~f~l~l 241 (463)
.+..++.++..+++.|+.||++|.||+.+|+|++++|++||+++|+|+.++.+++|++|+|||+|+++++.+|+.|++++
T Consensus 400 ~~~~~f~~~~~~~~~f~~er~v~~rE~~~~~Y~~~~y~la~~l~~lp~~~~~~~if~~i~Y~~~gl~~~~~~f~~f~l~~ 479 (617)
T TIGR00955 400 LTNMTFQNVFPVINVFTAELPVFLRETRSGLYRVSAYFLAKTIAELPLFIILPALFTSITYWMIGLRSGATHFLTFLFLV 479 (617)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhcCCccCHHHHHHHHHHHHHHHHHHHHHHHHhhhheeccCCccHHHHHHHHHHH
Confidence 99999998888899999999999999999999999999999999999999999999999999999987766665554443
Q ss_pred H
Q psy1567 242 T 242 (463)
Q Consensus 242 ~ 242 (463)
+
T Consensus 480 ~ 480 (617)
T TIGR00955 480 T 480 (617)
T ss_pred H
Confidence 3
No 6
>KOG0061|consensus
Probab=100.00 E-value=8.3e-36 Score=309.32 Aligned_cols=197 Identities=45% Similarity=0.837 Sum_probs=192.8
Q ss_pred CCCHHHHHHHHHHHhhhhhccChhhHHHHHHHHHHHHHHHHHHhcCCCCChhhhhhhhHHHHHHHHHHHHHHHHHHHHHh
Q psy1567 267 KANWWTQFKAVLWRSWLSVRKDPTLMKVRLLQTLMVSIMIGLIYFGQNLDQDGVMNINGALFICLTNMTFQNVFAVISVF 346 (463)
Q Consensus 267 ~~s~~~q~~~l~~R~~~~~~R~~~~~~~~l~~~~~~~~i~g~~f~~~~~~~~~~~~~~~~lf~~~~~~~~~~~~~~i~~~ 346 (463)
.++++.|+.++.+|.+++.+|||.....|+++.+.+++++|.+|++.+.+..+++++.|++++.+....+..+.+++..+
T Consensus 333 ~~s~~~q~~~L~~R~~~~~~R~~~~~~~r~~~~~~~~~~lg~~~~~~~~~~~~~~~~~g~~~~~~~~~~f~~~~~~i~~f 412 (613)
T KOG0061|consen 333 SPSWWTQFKILLKRSLKNIRRDPSLLLLRLIQSLVTGLLLGLLYLNLGNDAKGIQNRLGLFFFILSFMTFLSMFGAVPVF 412 (613)
T ss_pred CCcHHHHHHHHHHHHhHHHhhcHHHHHHHHHHHHHHHHHHHHHhhCCCCchHHHHHHHHHHHHHHHHHHHHHHHhHHHHh
Confidence 57899999999999999999999999999999999999999999999999999999999999999999999998899999
Q ss_pred hhhhhHHHHHhhCCCCchhHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy1567 347 CSELPLFMREHQNGMYRVDVYFLCKTLAEVPIFLAIPVIFTSVMYYMVHLNPIFSRFLTATLIITMVSTVATSFGYLISC 426 (463)
Q Consensus 347 ~~er~~~~rE~~~~~y~~~~y~la~~~~~l~~~~~~~~i~~~i~y~~~g~~~~~~~f~~~~l~~~l~~~~~~~lg~~i~~ 426 (463)
+.||+++.||+.+++|+..+|++|++++++|+.++.+++|.+|+|||+|++++..+|+.+.+++++..+++.++|+++++
T Consensus 413 ~~e~~~f~rE~~~~~Y~~s~y~la~~l~~lP~~~i~~~if~~i~Y~m~gl~~~~~~f~~~~l~~~~~~~~a~s~~~~i~~ 492 (613)
T KOG0061|consen 413 PQERPIFLRETSSGLYRLSSYYLAKTLAELPFLLVLSIIFSSIVYWMVGLNPGLSRFLYFLLIILLSSLVAESLGLFISA 492 (613)
T ss_pred HHHHHHHHHHHhcCchhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hcCChhhHHHhhhHHHHHHHHhhhccccCCCcccccC
Q psy1567 427 ISSSVSVALSIGPPVIIPFLLFGGFFLNAGLMGVAIF 463 (463)
Q Consensus 427 ~~~~~~~a~~~~~~~~~~~~l~sG~~i~~~~lP~~l~ 463 (463)
..+|...|+.+++++.+++++++|++++.+++|.|++
T Consensus 493 ~~~~~~~a~~~~~~~~~~f~l~~G~fi~~~~ip~~~~ 529 (613)
T KOG0061|consen 493 IVPNLSLATSLGPVLLLPFLLFGGFFINFDSIPKYFR 529 (613)
T ss_pred hccchhheeehHHHHHHHHHHHhhhhcCcccccHHHH
Confidence 9999999999999999999999999999999999874
No 7
>PLN03140 ABC transporter G family member; Provisional
Probab=100.00 E-value=2.2e-33 Score=314.66 Aligned_cols=227 Identities=19% Similarity=0.362 Sum_probs=191.5
Q ss_pred hhHHHHHHhhc-CCC-CCCCCCchHHHHHHhccCCCchhhhHHHHHHHHHHhhcChHHHHHHHhhhhhhhhHHHHhhCCC
Q psy1567 5 QQTFFQFGLRL-GAA-CPSNYNPADYFIQLLAVVPSREETCRNTIEMVCDTFDRSEYGIKLAQATELRGDLQAKAILGGK 82 (463)
Q Consensus 5 ~~~~~~yF~~~-G~~-cP~~~NpADf~ldv~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (463)
++++++||+++ |++ ||+++|||||++|+++.+.+. ...++|.+.|++|+.+++..+..+.... +.+
T Consensus 1109 ~~~~~~yF~~~~g~~~~p~~~NPAd~~l~v~~~~~~~-----~~~~d~~~~~~~s~~~~~~~~~~~~~~~------~~~- 1176 (1470)
T PLN03140 1109 SHKIIEYFEAIPGVPKIKEKYNPATWMLEVSSLAAEV-----KLGIDFAEHYKSSSLYQRNKALVKELST------PPP- 1176 (1470)
T ss_pred cccHHHHHHhcCCCCCCCCCCCchhhhhhhhcccccc-----cccchHHHHHhccHHHHHHHHHHHHhcc------CCC-
Confidence 47999999998 674 999999999999998754321 1235799999999887765544322110 000
Q ss_pred cccccCCCCCCCCCCCCcHHHHHHHHHHHhhHhhccChhHHHHHHHHHHHHHHHHHHHHhCCCCCc---cccchhhhHHH
Q psy1567 83 MDIFSNGNVANRSPYKANWWTQFKAVLWRSWLSVRKDPTLMKVRLLQTLMVSIMIGLIYFGQNLDQ---DGVMNINGALF 159 (463)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~q~~~L~~R~~~~~~Rn~~~~~~r~~~~~~~ali~g~~f~~~~~~~---~~~~~~~g~~f 159 (463)
.........++.+++++|+++|++|++++.||||.+...|+++++++|+++|++|+++++++ .+++++.|++|
T Consensus 1177 ----~~~~~~~~~~~~~s~~~Q~~~l~~R~~~~~~R~p~~~~~r~~~~i~~al~~G~~f~~~~~~~~~~~~~~~~~g~l~ 1252 (1470)
T PLN03140 1177 ----GASDLYFATQYSQSTWGQFKSCLWKQWWTYWRSPDYNLVRFFFTLAAALMVGTIFWKVGTKRSNANDLTMVIGAMY 1252 (1470)
T ss_pred ----CccccccCccccCCHHHHHHHHHHHHHHHHHCCHhHHHHHHHHHHHHHHHHHHHhhCCCCCcchhhhHHHHHHHHH
Confidence 01111224568899999999999999999999999999999999999999999999999775 46778899999
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhhHHHHhhcCCCcchhHHHHHHHhHHhhHHHHHHHHHHHHHhhcccccchhhhHHHHHH
Q psy1567 160 ICLTNMTFQNVFAVISVFCSELPLFMREHQNGMYRVDVYFLCKTLAEVPIFLAIPVIFTSVMYYMVHLNPIFSRFLTATL 239 (463)
Q Consensus 160 ~~~~~~~~~~~~~~i~~f~~er~i~~rE~~~g~Y~~~~Y~~a~~~~~~p~~~~~~~v~~~i~Y~~~gl~~~~~~f~~f~l 239 (463)
+++++..+..+...++.|..||++|+||+++|+|++.+|++|++++|+|+.++.+++|.+|+|||+|+++++..|+.|++
T Consensus 1253 ~~~~~~~~~~~~~~~p~~~~eR~vf~REr~~~~Y~~~~y~la~~l~eiP~~~~~~~if~~i~Y~m~Gl~~~~~~f~~~~~ 1332 (1470)
T PLN03140 1253 AAVLFVGINNCSTVQPMVAVERTVFYRERAAGMYSALPYAIAQVVCEIPYVLIQTTYYTLIVYAMVAFEWTAAKFFWFYF 1332 (1470)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCccHHHHHHHHH
Confidence 99999888877788899999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHH
Q psy1567 240 IITMAKAI 247 (463)
Q Consensus 240 ~l~l~~~i 247 (463)
+++++...
T Consensus 1333 ~~~l~~~~ 1340 (1470)
T PLN03140 1333 ISFFSFLY 1340 (1470)
T ss_pred HHHHHHHH
Confidence 99877643
No 8
>TIGR00956 3a01205 Pleiotropic Drug Resistance (PDR) Family protein.
Probab=100.00 E-value=3.6e-33 Score=313.96 Aligned_cols=230 Identities=20% Similarity=0.347 Sum_probs=189.6
Q ss_pred hhHHHHHHhhcCC-CCCCCCCchHHHHHHhccCCCchhhhHHHHHHHHHHhhcChHHHHHHHhhhhhhhhHHHHhhCCCc
Q psy1567 5 QQTFFQFGLRLGA-ACPSNYNPADYFIQLLAVVPSREETCRNTIEMVCDTFDRSEYGIKLAQATELRGDLQAKAILGGKM 83 (463)
Q Consensus 5 ~~~~~~yF~~~G~-~cP~~~NpADf~ldv~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (463)
++++++||+++|+ +||+++|||||++|+++.+.+.+. .++|.+.|++++..++..++.+..... ....
T Consensus 992 ~~~~~~yf~~~G~~~~p~~~NpAd~~ldvi~~~~~~~~-----~~~~~~~~~~s~~~~~~~~~~~~~~~~------~~~~ 1060 (1394)
T TIGR00956 992 SHTIINYFEKHGAPKCPEDANPAEWMLEVIGAAPGAHA-----NQDYHEVWRNSSEYQAVKNELDRLEAE------LSKA 1060 (1394)
T ss_pred cchHHHHHHhcCCCCCCCCCCHHHHHHHHhhcccccch-----hccHHHHHhcCHHHHHHHHHHHHhhcc------cccC
Confidence 3789999999996 999999999999999986543221 257899999988776554443221110 0000
Q ss_pred ccccCCCCCCCCCCCCcHHHHHHHHHHHhhHhhccChhHHHHHHHHHHHHHHHHHHHHhCCCCCccccchhhhHHHHHHH
Q psy1567 84 DIFSNGNVANRSPYKANWWTQFKAVLWRSWLSVRKDPTLMKVRLLQTLMVSIMIGLIYFGQNLDQDGVMNINGALFICLT 163 (463)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~q~~~L~~R~~~~~~Rn~~~~~~r~~~~~~~ali~g~~f~~~~~~~~~~~~~~g~~f~~~~ 163 (463)
+ .........++++++++|+++|++|++++.||||.+...|+++++++|+++|++|+++++++.+++++.|++|+.++
T Consensus 1061 ~--~~~~~~~~~~~~~s~~~q~~~l~~R~~~~~~R~~~~~~~r~~~~i~~~l~~G~~f~~~~~~~~~i~~~~g~~f~~~~ 1138 (1394)
T TIGR00956 1061 E--DDNDPDALSKYAASLWYQFKLVLWRTFQQYWRTPDYLYSKFFLTIFAALFIGFTFFKVGTSLQGLQNQMFAVFMATV 1138 (1394)
T ss_pred c--cccccccccccCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHH
Confidence 0 00111123467899999999999999999999999999999999999999999999999999999999999998888
Q ss_pred HHHHHHHHHHHHHhhhhhhHH-HHhhcCCCcchhHHHHHHHhHHhhHHHHHHHHHHHHHhhcccccchhhh-------HH
Q psy1567 164 NMTFQNVFAVISVFCSELPLF-MREHQNGMYRVDVYFLCKTLAEVPIFLAIPVIFTSVMYYMVHLNPIFSR-------FL 235 (463)
Q Consensus 164 ~~~~~~~~~~i~~f~~er~i~-~rE~~~g~Y~~~~Y~~a~~~~~~p~~~~~~~v~~~i~Y~~~gl~~~~~~-------f~ 235 (463)
...+. ....++.|+.||.++ .||+.+|+|++.+|++|++++|+|+.++.+++|.+|+|||+|+++++.. |+
T Consensus 1139 ~~~~~-~~~~~~~f~~~r~~~~~RE~~s~~Y~~~~y~~a~~l~elP~~~~~~~if~~i~Y~~~Gl~~~~~~~~~~~~~f~ 1217 (1394)
T TIGR00956 1139 LFNPL-IQQYLPPFVAQRDLYEVRERPSRTFSWLAFIAAQITVEIPYNLVAGTIFFFIWYYPVGFYWNASKTGQVHERGV 1217 (1394)
T ss_pred HHHHH-HHHhhhhHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHhheeecccccCcccccccccchHH
Confidence 77666 457788999999886 9999999999999999999999999999999999999999999988766 99
Q ss_pred HHHHHHHHHHHHh
Q psy1567 236 TATLIITMAKAIL 248 (463)
Q Consensus 236 ~f~l~l~l~~~i~ 248 (463)
.|++++++....+
T Consensus 1218 ~~~~~~~~~~~~~ 1230 (1394)
T TIGR00956 1218 LFWLLSTMFFLYF 1230 (1394)
T ss_pred HHHHHHHHHHHHH
Confidence 9999988876543
No 9
>KOG0065|consensus
Probab=99.97 E-value=2.9e-31 Score=280.87 Aligned_cols=227 Identities=19% Similarity=0.322 Sum_probs=193.8
Q ss_pred hhHHHHHHhhcC-CCCCCCCCchHHHHHHhccCCCchhhhHHHHHHHHHHhhcChHHHHHHHhhhhhhhhHHHHhhCCCc
Q psy1567 5 QQTFFQFGLRLG-AACPSNYNPADYFIQLLAVVPSREETCRNTIEMVCDTFDRSEYGIKLAQATELRGDLQAKAILGGKM 83 (463)
Q Consensus 5 ~~~~~~yF~~~G-~~cP~~~NpADf~ldv~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (463)
++.+++||+++| .+||+..|||||++|+++...+.+.. .+|++.|++|+.+++..++.+...+.. +.
T Consensus 1020 s~~li~YFes~~~~~~~~~~NPA~~mLevi~~~~~~~~~-----~D~a~~w~~S~e~k~~~e~v~~l~~~~------~~- 1087 (1391)
T KOG0065|consen 1020 SSKLIEYFESIGGVKCISDENPAEWMLEVIGAGAEASLS-----VDFAEIWKNSEEYKRNKELVKELSQPP------PG- 1087 (1391)
T ss_pred cHHHHHHHHhcCCccCCCCCChHHHHHhhcccccccccC-----ccHHHHHhccHHHHHHHHHHHHHhcCC------cc-
Confidence 467888999998 99999999999999999865544322 389999999999998887765432211 00
Q ss_pred ccccCCCCCCCCCCCCcHHHHHHHHHHHhhHhhccChhHHHHHHHHHHHHHHHHHHHHhCCCCCccccchhhhHHHHHHH
Q psy1567 84 DIFSNGNVANRSPYKANWWTQFKAVLWRSWLSVRKDPTLMKVRLLQTLMVSIMIGLIYFGQNLDQDGVMNINGALFICLT 163 (463)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~q~~~L~~R~~~~~~Rn~~~~~~r~~~~~~~ali~g~~f~~~~~~~~~~~~~~g~~f~~~~ 163 (463)
.......+.++.+|+|.|++.+++|++..+||||.+++.|++..++.|+++|+.||+++++..+.+|.+|++|..++
T Consensus 1088 ---~~~~~~~~~~fa~s~~~Q~k~~l~Rq~~syWRsp~y~~ar~~~~i~~gl~iGf~F~~~g~~~q~lqn~m~a~yma~v 1164 (1391)
T KOG0065|consen 1088 ---FSTDLEFKTRFAQSLWYQFKLCLWRQFLSYWRSPDYLMARFALTIVAGLFIGFTFWKVGHNVQGLQNAMGAAYMATV 1164 (1391)
T ss_pred ---CCcccccccccchhHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHhheeeeeecCCcHHHHHHHHHHHHHHHH
Confidence 12234445678999999999999999999999999999999999999999999999999999999999999998888
Q ss_pred HHHHHHHHHHHHHhhhhhhHHHHhhcCCCcchhHHHHHHHhHHhhHHHHHHHHHHHHHhhcccccchhhhHHHHHHHHHH
Q psy1567 164 NMTFQNVFAVISVFCSELPLFMREHQNGMYRVDVYFLCKTLAEVPIFLAIPVIFTSVMYYMVHLNPIFSRFLTATLIITM 243 (463)
Q Consensus 164 ~~~~~~~~~~i~~f~~er~i~~rE~~~g~Y~~~~Y~~a~~~~~~p~~~~~~~v~~~i~Y~~~gl~~~~~~f~~f~l~l~l 243 (463)
+..-.......+.+..||.+++||+.+|+|++.+|.+|++++|+|+.++++.+|.+|.|+++|+.+.+.+++.|++..++
T Consensus 1165 ~~~~~~~~~~~~~v~~e~~y~~RE~~s~mYs~~~~~~aq~~vEiP~~l~~stl~~~~~Y~~iGF~~~a~~~~~f~~~~~~ 1244 (1391)
T KOG0065|consen 1165 FSGPNNNQLQQPAVATERLYEYRERASNMYSWTPFALAQVLVEIPYNLLQSTLFFLITYYPIGFYWTASKFFWFLLFMFI 1244 (1391)
T ss_pred HhhhhhhhhhhhHHhhhhhheeeecccCcccHHHHHHHHHHHHHHHHHHHHHHhheeeeeeccchhhHHHHHHHHHHHHH
Confidence 76666444466777889999999999999999999999999999999999999999999999999999998888877666
Q ss_pred HHH
Q psy1567 244 AKA 246 (463)
Q Consensus 244 ~~~ 246 (463)
...
T Consensus 1245 f~l 1247 (1391)
T KOG0065|consen 1245 FFL 1247 (1391)
T ss_pred HHH
Confidence 543
No 10
>KOG0061|consensus
Probab=99.89 E-value=1.1e-21 Score=204.10 Aligned_cols=232 Identities=36% Similarity=0.649 Sum_probs=190.0
Q ss_pred CcchhHHHHHHhhcCCCCCCCCCchHHHHHHhccC-CCchhhhHHHHHHHHHHhhcChHHHHHHHhhhhhhhhHHHHhhC
Q psy1567 2 FPQQQTFFQFGLRLGAACPSNYNPADYFIQLLAVV-PSREETCRNTIEMVCDTFDRSEYGIKLAQATELRGDLQAKAILG 80 (463)
Q Consensus 2 ~~~~~~~~~yF~~~G~~cP~~~NpADf~ldv~~~~-~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~ 80 (463)
+|+++++++||+++|+|||++.|||||++|+++.+ +..+.....+.....+.++..+.. .+..+ . ....
T Consensus 252 ~G~~~~~~~ff~~~G~~~P~~~Npadf~l~l~s~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~-~---~~~~--- 321 (613)
T KOG0061|consen 252 SGSPRELLEFFSSLGFPCPELENPADFLLDLLSVDSGTRELEEAVRIAKLINKFSQTDNL---KKTLE-A---LEKS--- 321 (613)
T ss_pred ecCHHHHHHHHHhCCCCCCCcCChHHHHHHHHccCCCchhHHhHHHHHHHhhhccccchh---hhhHH-H---Hhhh---
Confidence 69999999999999999999999999999999975 333333333333333333320000 00000 0 0000
Q ss_pred CCcccccCCCCCCCCCCCCcHHHHHHHHHHHhhHhhccChhHHHHHHHHHHHHHHHHHHHHhCCCCCccccchhhhHHHH
Q psy1567 81 GKMDIFSNGNVANRSPYKANWWTQFKAVLWRSWLSVRKDPTLMKVRLLQTLMVSIMIGLIYFGQNLDQDGVMNINGALFI 160 (463)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~q~~~L~~R~~~~~~Rn~~~~~~r~~~~~~~ali~g~~f~~~~~~~~~~~~~~g~~f~ 160 (463)
..+ ....+....++||.|+++|++|.+++.+|||.....|+++++++|+++|++|++++++..+++++.|++|+
T Consensus 322 -~~~-----~~~~~~~~~~s~~~q~~~L~~R~~~~~~R~~~~~~~r~~~~~~~~~~lg~~~~~~~~~~~~~~~~~g~~~~ 395 (613)
T KOG0061|consen 322 -LST-----SKKVEIGTSPSWWTQFKILLKRSLKNIRRDPSLLLLRLIQSLVTGLLLGLLYLNLGNDAKGIQNRLGLFFF 395 (613)
T ss_pred -ccc-----ccccccccCCcHHHHHHHHHHHHhHHHhhcHHHHHHHHHHHHHHHHHHHHHhhCCCCchHHHHHHHHHHHH
Confidence 000 00111111789999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhhhhhhHHHHhhcCCCcchhHHHHHHHhHHhhHHHHHHHHHHHHHhhcccccchhhhHHHHHHH
Q psy1567 161 CLTNMTFQNVFAVISVFCSELPLFMREHQNGMYRVDVYFLCKTLAEVPIFLAIPVIFTSVMYYMVHLNPIFSRFLTATLI 240 (463)
Q Consensus 161 ~~~~~~~~~~~~~i~~f~~er~i~~rE~~~g~Y~~~~Y~~a~~~~~~p~~~~~~~v~~~i~Y~~~gl~~~~~~f~~f~l~ 240 (463)
.+..+.+.++.++++.|+.||++|.||+.+|+|+.++|++|++++++|+.++.+++|.+|+|||+|++++..+|++|.++
T Consensus 396 ~~~~~~f~~~~~~i~~f~~e~~~f~rE~~~~~Y~~s~y~la~~l~~lP~~~i~~~if~~i~Y~m~gl~~~~~~f~~~~l~ 475 (613)
T KOG0061|consen 396 ILSFMTFLSMFGAVPVFPQERPIFLRETSSGLYRLSSYYLAKTLAELPFLLVLSIIFSSIVYWMVGLNPGLSRFLYFLLI 475 (613)
T ss_pred HHHHHHHHHHHhHHHHhHHHHHHHHHHHhcCchhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhccCCcchHHHHHHHHH
Confidence 99999999999899999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhc
Q psy1567 241 ITMAKAILG 249 (463)
Q Consensus 241 l~l~~~i~~ 249 (463)
+++...+++
T Consensus 476 ~~~~~~~a~ 484 (613)
T KOG0061|consen 476 ILLSSLVAE 484 (613)
T ss_pred HHHHHHHHH
Confidence 999876554
No 11
>PLN03211 ABC transporter G-25; Provisional
Probab=99.87 E-value=3.9e-21 Score=202.11 Aligned_cols=194 Identities=25% Similarity=0.498 Sum_probs=186.0
Q ss_pred CCCCCHHHHHHHHHHHhhhhhccChhhHHHHHHHHHHHHHHHHHHhcCCCCChhhhhhhhHHHHHHHHHHHHHHHHHHHH
Q psy1567 265 PYKANWWTQFKAVLWRSWLSVRKDPTLMKVRLLQTLMVSIMIGLIYFGQNLDQDGVMNINGALFICLTNMTFQNVFAVIS 344 (463)
Q Consensus 265 ~~~~s~~~q~~~l~~R~~~~~~R~~~~~~~~l~~~~~~~~i~g~~f~~~~~~~~~~~~~~~~lf~~~~~~~~~~~~~~i~ 344 (463)
.+.+||++|+++|++|+++. +||+.....|+++.+++|+++|.+|++.+ +.+++++.|++|+++++.++.++++++.
T Consensus 383 ~~~~s~~~Q~~~L~~R~~~~-~r~~~~~~~r~~~~i~~~ll~G~lf~~~~--~~~~~~r~g~lff~~~~~~~~~~~~~~~ 459 (659)
T PLN03211 383 ISISTWFNQFSILLQRSLKE-RKHESFNTLRVFQVIAAALLAGLMWWHSD--FRDVQDRLGLLFFISIFWGVFPSFNSVF 459 (659)
T ss_pred ccCCCHHHHHHHHHHHHHHH-HhCcHHHHHHHHHHHHHHHHHHHHHhcCC--HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35689999999999999998 89999999999999999999999999874 6789999999999999988888889999
Q ss_pred HhhhhhhHHHHHhhCCCCchhHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy1567 345 VFCSELPLFMREHQNGMYRVDVYFLCKTLAEVPIFLAIPVIFTSVMYYMVHLNPIFSRFLTATLIITMVSTVATSFGYLI 424 (463)
Q Consensus 345 ~~~~er~~~~rE~~~~~y~~~~y~la~~~~~l~~~~~~~~i~~~i~y~~~g~~~~~~~f~~~~l~~~l~~~~~~~lg~~i 424 (463)
.++.||++++||+.+|+|++.+|++||+++++|+.++.+++|.+|+|||+|+++++.+|+.|++++++..+++.++|+++
T Consensus 460 ~f~~er~v~~rE~~~~~Y~~~~Y~la~~l~elP~~~~~~~if~~i~Y~m~Gl~~~~~~F~~f~li~~l~~~~~~s~g~~i 539 (659)
T PLN03211 460 VFPQERAIFVKERASGMYTLSSYFMARIVGDLPMELILPTIFLTVTYWMAGLKPELGAFLLTLLVLLGYVLVSQGLGLAL 539 (659)
T ss_pred HHHHhhHHHHHhhhCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhheeEcCCCcCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhcCChhhHHHhhhHHHHHHHHhhhccccCCCcccccC
Q psy1567 425 SCISSSVSVALSIGPPVIIPFLLFGGFFLNAGLMGVAIF 463 (463)
Q Consensus 425 ~~~~~~~~~a~~~~~~~~~~~~l~sG~~i~~~~lP~~l~ 463 (463)
+++++|.+.|+.++++++.++++||||+++ ++|+||+
T Consensus 540 ~a~~~~~~~a~~~~~~~~~~~~lfsGf~i~--~ip~~~~ 576 (659)
T PLN03211 540 GAAIMDAKKASTIVTVTMLAFVLTGGFYVH--KLPSCMA 576 (659)
T ss_pred HHHcCCHHHHHHHHHHHHHHHHHHhhhhHh--hchHHHH
Confidence 999999999999999999999999999997 7999974
No 12
>TIGR00955 3a01204 The Eye Pigment Precursor Transporter (EPP) Family protein.
Probab=99.85 E-value=5.8e-20 Score=193.22 Aligned_cols=201 Identities=60% Similarity=1.058 Sum_probs=195.0
Q ss_pred CCCCCCCHHHHHHHHHHHhhhhhccChhhHHHHHHHHHHHHHHHHHHhcCCCCChhhhhhhhHHHHHHHHHHHHHHHHHH
Q psy1567 263 RSPYKANWWTQFKAVLWRSWLSVRKDPTLMKVRLLQTLMVSIMIGLIYFGQNLDQDGVMNINGALFICLTNMTFQNVFAV 342 (463)
Q Consensus 263 ~~~~~~s~~~q~~~l~~R~~~~~~R~~~~~~~~l~~~~~~~~i~g~~f~~~~~~~~~~~~~~~~lf~~~~~~~~~~~~~~ 342 (463)
.+++..+++.|++++++|.++..+|||..+..+++..+++++++|.+|++.+.++.+++++.|++|++++..++.++..+
T Consensus 332 ~~~~~~~~~~q~~~l~~R~~~~~~R~~~~~~~~~~~~i~~~li~G~~f~~~~~~~~~~~~~~g~lf~~~~~~~f~~~~~~ 411 (617)
T TIGR00955 332 GIGYNASWWTQFYALLKRSWLSVLRDPLLLKVRLIQTMMTAILIGLIYLGQGLTQKGVQNINGALFLFLTNMTFQNVFPV 411 (617)
T ss_pred ccccCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35678999999999999999999999999999999999999999999999999999999999999999999999988888
Q ss_pred HHHhhhhhhHHHHHhhCCCCchhHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHHHHHHHH
Q psy1567 343 ISVFCSELPLFMREHQNGMYRVDVYFLCKTLAEVPIFLAIPVIFTSVMYYMVHLNPIFSRFLTATLIITMVSTVATSFGY 422 (463)
Q Consensus 343 i~~~~~er~~~~rE~~~~~y~~~~y~la~~~~~l~~~~~~~~i~~~i~y~~~g~~~~~~~f~~~~l~~~l~~~~~~~lg~ 422 (463)
+..++.||+++.||+.+|+|++.+|++||+++++|..++.+++|.+|+||++|+++++.+|+.+++++++..+++.++|.
T Consensus 412 ~~~f~~er~v~~rE~~~~~Y~~~~y~la~~l~~lp~~~~~~~if~~i~Y~~~gl~~~~~~f~~f~l~~~l~~~~~~s~~~ 491 (617)
T TIGR00955 412 INVFTAELPVFLRETRSGLYRVSAYFLAKTIAELPLFIILPALFTSITYWMIGLRSGATHFLTFLFLVTLVANVATSFGY 491 (617)
T ss_pred HHHHHHHHHHHHHhhcCCccCHHHHHHHHHHHHHHHHHHHHHHHHhhhheeccCCccHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhcCChhhHHHhhhHHHHHHHHhhhccccCCCcccccC
Q psy1567 423 LISCISSSVSVALSIGPPVIIPFLLFGGFFLNAGLMGVAIF 463 (463)
Q Consensus 423 ~i~~~~~~~~~a~~~~~~~~~~~~l~sG~~i~~~~lP~~l~ 463 (463)
+++++++|...|+.+++++++++++|+|+++|.+++|.||+
T Consensus 492 ~i~~~~~~~~~a~~~~~~~~~~~~lf~G~~i~~~~ip~~~~ 532 (617)
T TIGR00955 492 LISCAFSSTSMALTVGPPFVIPFLLFGGFFINSDSIPVYFK 532 (617)
T ss_pred HHHHhcCchHHHHHHHHHHHHHHHHHhhcccChhhccHHHH
Confidence 99999999999999999999999999999999999999874
No 13
>PF01061 ABC2_membrane: ABC-2 type transporter; InterPro: IPR013525 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). A number of bacterial transport systems have been found to contain integral membrane components that have similar sequences []: these systems fit the characteristics of ATP-binding cassette transporters []. The proteins form homo- or hetero-oligomeric channels, allowing ATP-mediated transport. Hydropathy analysis of the proteins has revealed the presence of 6 possible transmembrane regions. These proteins belong to family 2 of ABC transporters.; GO: 0016020 membrane
Probab=99.77 E-value=1.6e-20 Score=171.25 Aligned_cols=188 Identities=22% Similarity=0.331 Sum_probs=172.0
Q ss_pred HHHHHHHHHhhhhhccChhhH-HHHHHHHHHHHHHHHHHhcCCCCChhhhhhhhHHHHHHHHHHHHHHHHHHHHHhhhhh
Q psy1567 272 TQFKAVLWRSWLSVRKDPTLM-KVRLLQTLMVSIMIGLIYFGQNLDQDGVMNINGALFICLTNMTFQNVFAVISVFCSEL 350 (463)
Q Consensus 272 ~q~~~l~~R~~~~~~R~~~~~-~~~l~~~~~~~~i~g~~f~~~~~~~~~~~~~~~~lf~~~~~~~~~~~~~~i~~~~~er 350 (463)
+|++.+++|++++.+|||... ...++.+++.++++|.++.+.+++.++. ++.+.+...+....+....+......+||
T Consensus 1 ~q~~~l~~r~~~~~~r~~~~~~~~~~~~pl~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (210)
T PF01061_consen 1 RQIWALLRREFKRFWRNPFLGLIWSLIFPLLLLLIFGFIFGKLGNSQDGF-NRPGLIFGSIIFSFFSSISGSSISFERER 79 (210)
T ss_pred CHHHHHHHHHHHHHHCCchHHHHHHHHHHHHHHHHHHHHHhccccccccc-ccceeeehhhHHhhhhhcccchhhhhhhc
Confidence 599999999999999999888 9999999999999999999988444444 67788888888777666656668889999
Q ss_pred hHHHHHhhCCCCchhHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Q psy1567 351 PLFMREHQNGMYRVDVYFLCKTLAEVPIFLAIPVIFTSVMYYMVHLNPIFSRFLTATLIITMVSTVATSFGYLISCISSS 430 (463)
Q Consensus 351 ~~~~rE~~~~~y~~~~y~la~~~~~l~~~~~~~~i~~~i~y~~~g~~~~~~~f~~~~l~~~l~~~~~~~lg~~i~~~~~~ 430 (463)
+.+.||+.++.|++.+|.++|.+.+++..++.++++.++.+.+.|++.+ +++.+++.+++..+++.++|.+++.++++
T Consensus 80 ~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~i~~~~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~g~~~~~~~~~ 157 (210)
T PF01061_consen 80 GTLERERASPLYSPFAYLLAKVLSAFLISLIISLIVLIIAYLLFGLDFE--SFFLFLLILLLSILCSSGLGLLLAALFPS 157 (210)
T ss_pred cccccccccccccchhhheeeccccccccccccchhhhhhhhhhccccc--cchheecccccccccccccccccccchhh
Confidence 9999999999999999999999999999999999999999999999877 77888999999999999999999999999
Q ss_pred hhhHHHhhhHHHHHHHHhhhccccCCCccccc
Q psy1567 431 VSVALSIGPPVIIPFLLFGGFFLNAGLMGVAI 462 (463)
Q Consensus 431 ~~~a~~~~~~~~~~~~l~sG~~i~~~~lP~~l 462 (463)
.+.+..+.+++..+++++||.++|.+++|+|+
T Consensus 158 ~~~~~~~~~~~~~~~~~~sg~~~p~~~lP~~~ 189 (210)
T PF01061_consen 158 FRDASAISSLILLLLFFLSGVFFPLSSLPSWL 189 (210)
T ss_pred hhhhhhhhhhcccccccceeeecchHHChHHH
Confidence 99999999999999999999999999999875
No 14
>TIGR01247 drrB daunorubicin resistance ABC transporter membrane protein. This model describes daunorubicin resistance ABC transporter, membrane associated protein in bacteria and archaea. The protein associated with effux of the drug, daunorubicin. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. In eukaryotes proteins of similar function include p-gyco proteins, multidrug resistance protein etc.
Probab=99.47 E-value=2.3e-12 Score=119.79 Aligned_cols=179 Identities=14% Similarity=0.181 Sum_probs=132.8
Q ss_pred HhhhhhccChhhHHHHHHHHHHHHHHHHHHhcCC-CCC--hhhhhhh----hHHHHHHHHHHHHHHHHHHHHHhhhhhhH
Q psy1567 280 RSWLSVRKDPTLMKVRLLQTLMVSIMIGLIYFGQ-NLD--QDGVMNI----NGALFICLTNMTFQNVFAVISVFCSELPL 352 (463)
Q Consensus 280 R~~~~~~R~~~~~~~~l~~~~~~~~i~g~~f~~~-~~~--~~~~~~~----~~~lf~~~~~~~~~~~~~~i~~~~~er~~ 352 (463)
|++|+..|||......++.|++..+++|.++.+. +.+ ..+.... .|.+.+.....+.... ......+|++.
T Consensus 1 re~~~~~r~~~~~~~~l~~Pl~~~~~~~~~~~~~~~~~~~~~g~~y~~fl~~G~~~~~~~~~~~~~~--~~~~~~~~~g~ 78 (236)
T TIGR01247 1 RELKRFIRSRSRIVGSILNPLLWLIFFGKGWSGAFRFPMIFGGVDYMTYLVPGIVAMTVFNMSFFSG--ISVIWDRQFGF 78 (236)
T ss_pred CchHHHHHhhHHHHHHHHHHHHHHHHHHHHhhcccccccccCCCcHHHHHHHHHHHHHHHHHHHHhh--hHHHHHHHhCH
Confidence 7889999999999999999999999999988753 111 1111111 2333333333332221 11222344444
Q ss_pred HHHHhhCCCCchhHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCChh
Q psy1567 353 FMREHQNGMYRVDVYFLCKTLAEVPIFLAIPVIFTSVMYYMVHLNPIFSRFLTATLIITMVSTVATSFGYLISCISSSVS 432 (463)
Q Consensus 353 ~~rE~~~~~y~~~~y~la~~~~~l~~~~~~~~i~~~i~y~~~g~~~~~~~f~~~~l~~~l~~~~~~~lg~~i~~~~~~~~ 432 (463)
+.|=. ....+...|+++|.+.+++..+++.++..++.+++.+.+ ...++..++..++...+..++|.+++...+|.+
T Consensus 79 ~~~~~-~~P~~~~~~~l~~~l~~~~~~~~~~~i~~~i~~~~~~~~--~~~~~~~~~~~~l~~~~~~~lg~~l~~~~~~~~ 155 (236)
T TIGR01247 79 LKEIL-VAPASRVEMIVGRILGGSTVAMIQGAIILALSFIVAILK--PSGVIPTLVLAFIVGVALSGLGVAIAARMDSME 155 (236)
T ss_pred HHHHH-hCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh--hhhHHHHHHHHHHHHHHHHHHHHHHHHHhCCHH
Confidence 44444 444489999999999999999999999999998887755 334555556666777888999999999999999
Q ss_pred hHHHhhhHHHHHHHHhhhccccCCCcccccC
Q psy1567 433 VALSIGPPVIIPFLLFGGFFLNAGLMGVAIF 463 (463)
Q Consensus 433 ~a~~~~~~~~~~~~l~sG~~i~~~~lP~~l~ 463 (463)
.++.+.+++..++.++||.+.|.+.+|+|++
T Consensus 156 ~~~~i~~~~~~~l~~lsG~~~P~~~~P~~~~ 186 (236)
T TIGR01247 156 GFQIIMSMLMLPMFFLSGAFYPITTMPAWMQ 186 (236)
T ss_pred HHHHHHHHHHHHHHHHHHhhcCHHhCHHHHH
Confidence 9999999999999999999999999999863
No 15
>TIGR01291 nodJ ABC-2 type transporter, NodJ family. Nearly all members of this subfamily are NodJ which, together with NodI (TIGR01288), acts to export a variety of modified carbohydrate molecules as signals to plant hosts to establish root nodules. The seed alignment includes a highly divergent member from Azorhizobium caulinodans that is, nonetheless, associated with nodulation. This model is designated as subfamily in part because not all sequences derived from the last common ancestral sequence of Rhizobium sp. and Azorhizobium caulinodans NodJ are necessarily nodulation proteins.
Probab=99.45 E-value=6.6e-12 Score=117.76 Aligned_cols=187 Identities=13% Similarity=0.061 Sum_probs=137.2
Q ss_pred HHHHHHHHhhhhhccC-hhhHHHHHHHHHHHHHHHHHHhcCCCCChhh--hhhh--hHHHHHHHHHHHHHHHHHHHHHhh
Q psy1567 273 QFKAVLWRSWLSVRKD-PTLMKVRLLQTLMVSIMIGLIYFGQNLDQDG--VMNI--NGALFICLTNMTFQNVFAVISVFC 347 (463)
Q Consensus 273 q~~~l~~R~~~~~~R~-~~~~~~~l~~~~~~~~i~g~~f~~~~~~~~~--~~~~--~~~lf~~~~~~~~~~~~~~i~~~~ 347 (463)
+...+.+|++++.+|+ |......+++|++..+++|..+.....+..+ ..+. .|++-+.++..+..........-.
T Consensus 6 ~~~~~~~R~~~~~~r~~~~~~~~~~~~P~~~l~~fg~~~~~~~~~~~g~~y~~f~~pg~l~~~~~~~~~~~~~~~~~~~~ 85 (253)
T TIGR01291 6 NWAAVWRRNALAWKKVAAASVLGNLADPLIYLFGLGVGLGKMVGSVDGVSYAAFLAAGMVATSAMTASTFETIYATFARM 85 (253)
T ss_pred hHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhhhccccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3567789999999999 9999999999999999999998754111111 1111 144444444443322211122222
Q ss_pred hhhhHHHHHhhCCCCchhHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy1567 348 SELPLFMREHQNGMYRVDVYFLCKTLAEVPIFLAIPVIFTSVMYYMVHLNPIFSRFLTATLIITMVSTVATSFGYLISCI 427 (463)
Q Consensus 348 ~er~~~~rE~~~~~y~~~~y~la~~~~~l~~~~~~~~i~~~i~y~~~g~~~~~~~f~~~~l~~~l~~~~~~~lg~~i~~~ 427 (463)
+|++.++|-+..+. ++..+++||++.+....+++.++...+.+.+ |..+ ...++..+.+.++..++..++|.+++.+
T Consensus 86 r~~g~~~~l~~~Pv-~~~~~~~g~~~~~~~~~~~~~~ii~~~~~~~-g~~~-~~~~l~~~~~~ll~~l~~~~lg~~~a~~ 162 (253)
T TIGR01291 86 RVTRTWEAMLYTPI-TVGDIVLGEVAWAATKASLAGTIIGVVTATL-GYIE-WWSLIYILPVIALTGLAFASLSMLVAAL 162 (253)
T ss_pred HHcccHHHHHhCCC-cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hhch-hhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45566666666665 9999999999999888888887766665543 5443 3445555667677888888999999999
Q ss_pred cCChhhHHHhhhHHHHHHHHhhhccccCCCccccc
Q psy1567 428 SSSVSVALSIGPPVIIPFLLFGGFFLNAGLMGVAI 462 (463)
Q Consensus 428 ~~~~~~a~~~~~~~~~~~~l~sG~~i~~~~lP~~l 462 (463)
.++.+.+..+...+..|++++||.+.|.+++|+|+
T Consensus 163 ~~~~~~~~~i~~~i~~pl~flSg~~~P~~~mP~~l 197 (253)
T TIGR01291 163 APSYAYFAFYQSLVITPMLFLSGVVFPVFQLNDVI 197 (253)
T ss_pred hccHHHHHHHHHHHHHHHHHHHHHhcCHHhChHHH
Confidence 99999999999999999999999999999999986
No 16
>TIGR03861 phenyl_ABC_PedC alcohol ABC transporter, permease protein. Members of this protein family, part of a larger class of efflux-type ABC transport permease proteins, are found exclusively in genomic contexts with pyrroloquinoline-quinone (PQQ) biosynthesis enzymes and/or PQQ-dependent alcohol dehydrogenases, such as the phenylethanol dehydrogenase PedE of Pseudomonas putida U. Members include PedC, an apparent phenylethanol transport protein whose suggested role is efflux to limit intracellular concentrations of toxic metabolites during phenylethanol catalysis.
Probab=99.41 E-value=2.3e-11 Score=114.29 Aligned_cols=188 Identities=15% Similarity=0.180 Sum_probs=137.3
Q ss_pred HHHHHHHHHHhhhhhccChhhHHHHHHHHHHHHHHHHHHhcCC-CC------Ch--hh-hhhhhHHHHHHHHHHHHHHHH
Q psy1567 271 WTQFKAVLWRSWLSVRKDPTLMKVRLLQTLMVSIMIGLIYFGQ-NL------DQ--DG-VMNINGALFICLTNMTFQNVF 340 (463)
Q Consensus 271 ~~q~~~l~~R~~~~~~R~~~~~~~~l~~~~~~~~i~g~~f~~~-~~------~~--~~-~~~~~~~lf~~~~~~~~~~~~ 340 (463)
++++.++.+|++++..|||..+...++.|++..+++|.+|... +. +. +. ..-..|++-+.+...++.+.
T Consensus 1 ~~~~~~l~~rel~~~~r~~~~~~~~ll~Pl~~l~~f~~~f~~~~~~~~~~~~~~~~~y~~fl~pGi~~~~~~~~~~~~~- 79 (253)
T TIGR03861 1 LICFNGIVLREALRFVQQRSRFLSALVRPLLWLLVFAAGFRAALGISIIEPYDTYITYEVYIVPGLCCMILLFNGMQSS- 79 (253)
T ss_pred ChHHHHHHHHHHHHHHHhhHHHHHHHHhHHHHHHHHHHHHHhhccccccccCCCCCCHHHHHHHHHHHHHHHHHHHHhh-
Confidence 3678999999999999999999999999999999999998643 11 11 11 11112443333333333221
Q ss_pred HHHHHhhhhhhHHHHHhhCCCCchhHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHHHHHH
Q psy1567 341 AVISVFCSELPLFMREHQNGMYRVDVYFLCKTLAEVPIFLAIPVIFTSVMYYMVHLNPIFSRFLTATLIITMVSTVATSF 420 (463)
Q Consensus 341 ~~i~~~~~er~~~~rE~~~~~y~~~~y~la~~~~~l~~~~~~~~i~~~i~y~~~g~~~~~~~f~~~~l~~~l~~~~~~~l 420 (463)
......+|++.+.+-+..+. +...+.++|++.+....+++.++..++.+. .|.+.+...++......++...+..++
T Consensus 80 -~~~~~~r~~g~~~~l~~~p~-~~~~~~l~~~l~~~~~~~~~~~i~~~~~~~-~g~~~~~~~~l~~~~~~~l~~~~~~~l 156 (253)
T TIGR03861 80 -LSMVYDREMGSMRVLLTSPL-PRPFLLFCKLLASALISLLQVYAFLAIAAL-VGVQPPVWGYVSVLPALVLVAFMLGAL 156 (253)
T ss_pred -hHhHHhHhcCHHHHHhhCCC-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HcCCCCchhHHHHHHHHHHHHHHHHHH
Confidence 12233455556666666665 899999999999998888887776666654 376655444555555666677888899
Q ss_pred HHHHHHhcCChhhHHHhhhHHHHHHHHhhhccccCCCc---cccc
Q psy1567 421 GYLISCISSSVSVALSIGPPVIIPFLLFGGFFLNAGLM---GVAI 462 (463)
Q Consensus 421 g~~i~~~~~~~~~a~~~~~~~~~~~~l~sG~~i~~~~l---P~~l 462 (463)
|.++|.++++.+.+..+.+++..+++++||.+.|.+++ |+|+
T Consensus 157 gl~la~l~~~~~~~~~i~~~~~~~l~flSgi~~p~~~~~~~p~~l 201 (253)
T TIGR03861 157 GLALSNLIRQLENFAGVMNFVIFPMFFLSSALYPLWKMQEASTWL 201 (253)
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHHHHHHhhHhhhhhhcccccHHH
Confidence 99999999999999999999999999999999998776 6665
No 17
>PF01061 ABC2_membrane: ABC-2 type transporter; InterPro: IPR013525 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). A number of bacterial transport systems have been found to contain integral membrane components that have similar sequences []: these systems fit the characteristics of ATP-binding cassette transporters []. The proteins form homo- or hetero-oligomeric channels, allowing ATP-mediated transport. Hydropathy analysis of the proteins has revealed the presence of 6 possible transmembrane regions. These proteins belong to family 2 of ABC transporters.; GO: 0016020 membrane
Probab=99.28 E-value=1.2e-12 Score=119.04 Aligned_cols=142 Identities=25% Similarity=0.323 Sum_probs=123.3
Q ss_pred HHHHHHHHHhhHhhccChhHH-HHHHHHHHHHHHHHHHHHhCCCCCccccchhhhHHHHHHHHHHHHHHHHHHHHhhhhh
Q psy1567 103 TQFKAVLWRSWLSVRKDPTLM-KVRLLQTLMVSIMIGLIYFGQNLDQDGVMNINGALFICLTNMTFQNVFAVISVFCSEL 181 (463)
Q Consensus 103 ~q~~~L~~R~~~~~~Rn~~~~-~~r~~~~~~~ali~g~~f~~~~~~~~~~~~~~g~~f~~~~~~~~~~~~~~i~~f~~er 181 (463)
+|++.|++|+++..+|||... ..+++..++.++++|.++.+++++.++. ++.++++..+....+....+......+||
T Consensus 1 ~q~~~l~~r~~~~~~r~~~~~~~~~~~~pl~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (210)
T PF01061_consen 1 RQIWALLRREFKRFWRNPFLGLIWSLIFPLLLLLIFGFIFGKLGNSQDGF-NRPGLIFGSIIFSFFSSISGSSISFERER 79 (210)
T ss_pred CHHHHHHHHHHHHHHCCchHHHHHHHHHHHHHHHHHHHHHhccccccccc-ccceeeehhhHHhhhhhcccchhhhhhhc
Confidence 599999999999999999888 8999999999999999999998545555 77888888888777666666657789999
Q ss_pred hHHHHhhcCCCcchhHHHHHHHhHHhhHHHHHHHHHHHHHhhcccccchhhhHHHHHHHHHHHHHH
Q psy1567 182 PLFMREHQNGMYRVDVYFLCKTLAEVPIFLAIPVIFTSVMYYMVHLNPIFSRFLTATLIITMAKAI 247 (463)
Q Consensus 182 ~i~~rE~~~g~Y~~~~Y~~a~~~~~~p~~~~~~~v~~~i~Y~~~gl~~~~~~f~~f~l~l~l~~~i 247 (463)
..+.||+.++.|++.+|.++|.+.+++..++.++++..+.|.+.|++.+ +++.+.+.+++....
T Consensus 80 ~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~i~~~~~~~~~~~~~~--~~~~~~~~~~l~~~~ 143 (210)
T PF01061_consen 80 GTLERERASPLYSPFAYLLAKVLSAFLISLIISLIVLIIAYLLFGLDFE--SFFLFLLILLLSILC 143 (210)
T ss_pred cccccccccccccchhhheeeccccccccccccchhhhhhhhhhccccc--cchheeccccccccc
Confidence 9999999999999999999999999999999999999999999999987 666666665555433
No 18
>TIGR00025 Mtu_efflux ABC transporter efflux protein, DrrB family. This model represents a branch of a larger superfamily that also includes NodJ, a part of the NodIJ pair of nodulation-triggering signal efflux proteins. The members of this branch may all act in antibiotic resistance.
Probab=99.27 E-value=3.4e-10 Score=104.88 Aligned_cols=173 Identities=12% Similarity=0.086 Sum_probs=115.2
Q ss_pred ccChhhHHHHHHHHHHHHHHHHHHhcCCCCChhhhhh-hhHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHhhCCCCch
Q psy1567 286 RKDPTLMKVRLLQTLMVSIMIGLIYFGQNLDQDGVMN-INGALFICLTNMTFQNVFAVISVFCSELPLFMREHQNGMYRV 364 (463)
Q Consensus 286 ~R~~~~~~~~l~~~~~~~~i~g~~f~~~~~~~~~~~~-~~~~lf~~~~~~~~~~~~~~i~~~~~er~~~~rE~~~~~y~~ 364 (463)
+|||......+.+|+++.++++.++.+... .+.... ..+.+-+..+..+.... +......+|++.+.|-+.++. ++
T Consensus 2 ~r~p~~~~~~~~~p~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~-~~~i~~er~~G~l~rl~~~P~-~~ 78 (232)
T TIGR00025 2 LRVGAQIILTMFIPITFMVGLNLLPGGSVT-HNRGATFIPVLMALAAISTAFTGQ-AIAVARDRRYGALKRLGATPL-PR 78 (232)
T ss_pred cccHHHHHHHHHHHHHHHHHHHHhcCCccC-CcchhHhhHHHHHHHHHHHHHHHH-HHHHHHHHHhCHHHHHhcCCC-cH
Confidence 699999999999999999999999886311 112221 22333333332222222 222233444556666665555 99
Q ss_pred hHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC---ChhhHHHhhhHH
Q psy1567 365 DVYFLCKTLAEVPIFLAIPVIFTSVMYYMVHLNPIFSRFLTATLIITMVSTVATSFGYLISCISS---SVSVALSIGPPV 441 (463)
Q Consensus 365 ~~y~la~~~~~l~~~~~~~~i~~~i~y~~~g~~~~~~~f~~~~l~~~l~~~~~~~lg~~i~~~~~---~~~~a~~~~~~~ 441 (463)
..|+++|.+...+..+++..+..++ ++..|++.... ....++...+....+..++.+++.+++ +.+.+..+.++.
T Consensus 79 ~~~l~g~~~~~~~~~~~~~~~~~~~-~~~~g~~~~~~-~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~i~~~~ 156 (232)
T TIGR00025 79 LGILAGRSLAVVARVFLQTLILLVI-GFVLGFRFAGG-ALTALTLGAVIIALGTALFAALGLVAGGTLQAEIVLAVANLV 156 (232)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH-HHHhccCcCCc-hHHHHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHH
Confidence 9999999888888877776555544 55678875432 233334444455556666777777764 455558888999
Q ss_pred HHHHHHhhhccccCCCcccccC
Q psy1567 442 IIPFLLFGGFFLNAGLMGVAIF 463 (463)
Q Consensus 442 ~~~~~l~sG~~i~~~~lP~~l~ 463 (463)
.+++.++||.+.|.+.+|+|++
T Consensus 157 ~~p~~~lSG~~~P~~~mP~~lq 178 (232)
T TIGR00025 157 WFIFALLSAGLVPLNLIPTWIK 178 (232)
T ss_pred HHHHHHHhheeeecccccHHHH
Confidence 9999999999999999999974
No 19
>PRK15066 inner membrane transport permease; Provisional
Probab=99.10 E-value=1.4e-08 Score=95.62 Aligned_cols=190 Identities=12% Similarity=0.134 Sum_probs=122.4
Q ss_pred HHHHHHHHHHHhhhhhccChhh-HHHHHHHHHHHHHHHHHHhcCC-CC--Chhhh-hhhhHHHHHHHHHHHHHHHHHHHH
Q psy1567 270 WWTQFKAVLWRSWLSVRKDPTL-MKVRLLQTLMVSIMIGLIYFGQ-NL--DQDGV-MNINGALFICLTNMTFQNVFAVIS 344 (463)
Q Consensus 270 ~~~q~~~l~~R~~~~~~R~~~~-~~~~l~~~~~~~~i~g~~f~~~-~~--~~~~~-~~~~~~lf~~~~~~~~~~~~~~i~ 344 (463)
.++.++.+.+|+++...||+.. ...-++++++..+++|.++... +. +.+.. .-..|.+-+.....+.......+.
T Consensus 6 ~~~~~~~l~~re~~~~~r~~~~~ll~pli~~~~~~~vfg~~~~~~~~~~~~~~y~~fl~pGll~~~~~~~~~~~~~~~i~ 85 (257)
T PRK15066 6 YWIALKTIVRKEIRRFLRIWVQTLVPPVITMTLYFLIFGNLIGSRIGEMGGFSYMQFIVPGLIMMSVITNSYSNVASSFF 85 (257)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhccccCCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4678899999999999999865 3334455556666666665421 11 11111 111244444443333332212122
Q ss_pred HhhhhhhHHHHHhhCCCCchhHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy1567 345 VFCSELPLFMREHQNGMYRVDVYFLCKTLAEVPIFLAIPVIFTSVMYYMVHLNPIFSRFLTATLIITMVSTVATSFGYLI 424 (463)
Q Consensus 345 ~~~~er~~~~rE~~~~~y~~~~y~la~~~~~l~~~~~~~~i~~~i~y~~~g~~~~~~~f~~~~l~~~l~~~~~~~lg~~i 424 (463)
. .++.+.++|=..++ .+...+.+++++......+++.++..++.+...|.+.. .........++...+....|.++
T Consensus 86 ~-~~~~~~~~~l~vtp-~~~~~~~~~~il~~~~~~~~~~~iil~i~~~~~~~~~~--~~~~~l~~~ll~~~~f~~~gl~~ 161 (257)
T PRK15066 86 S-AKFQRNIEELLVSP-VPNHVIILGYVGGGVARGLCVGILVTLISLFFVPLQVH--HWGIVLLTVLLTAILFSLGGLIN 161 (257)
T ss_pred H-HHHhhhHHHHHcCC-CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHh--HHHHHHHHHHHHHHHHHHHHHHH
Confidence 1 12222333333344 48999999999999888888887777777766666643 23334444444445455568999
Q ss_pred HHhcCChhhHHHhhhHHHHHHHHhhhccccCCCcccccC
Q psy1567 425 SCISSSVSVALSIGPPVIIPFLLFGGFFLNAGLMGVAIF 463 (463)
Q Consensus 425 ~~~~~~~~~a~~~~~~~~~~~~l~sG~~i~~~~lP~~l~ 463 (463)
+.+.++.+.+..+.+++..+++++||.+.|.+++|+|++
T Consensus 162 a~~~~~~~~~~~i~~~~~~pl~flSgi~~p~~~lP~~l~ 200 (257)
T PRK15066 162 AVFAKSFDDISIIPTFVLTPLTYLGGVFYSISLLPPFWQ 200 (257)
T ss_pred HHHHccHHHHHHHHHHHHHHHHHHcchhccHHhChHHHH
Confidence 988889899999999999999999999999999999863
No 20
>TIGR01248 drrC daunorubicin resistance protein C. The model describes daunorubicin resistance protein C in bacteria. This protein confers the function of daunorubicin resistance. The protein seems to share strong sequence similarity to UvrA proteins, which are involved in excision repair of DNA. Disruption of drrC gene showed increased sensitivity upon exposure to duanorubicin. However it failed to complement uvrA mutants to exposure to UV irradiation. The mechanism on how it confers duanomycin resistance is unclear, but has been suggested to be different from DrrA and DrrB which are antiporters.
Probab=98.79 E-value=1.9e-07 Score=80.28 Aligned_cols=116 Identities=9% Similarity=-0.072 Sum_probs=89.7
Q ss_pred HhhhhhhHHHHHhhCCCCchhHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCcchH--HHHHHHHHHHHHHHHHHHHHHH
Q psy1567 345 VFCSELPLFMREHQNGMYRVDVYFLCKTLAEVPIFLAIPVIFTSVMYYMVHLNPIF--SRFLTATLIITMVSTVATSFGY 422 (463)
Q Consensus 345 ~~~~er~~~~rE~~~~~y~~~~y~la~~~~~l~~~~~~~~i~~~i~y~~~g~~~~~--~~f~~~~l~~~l~~~~~~~lg~ 422 (463)
...+|++.++|-+.++. +++.++++|++......+++.++..++.+. .|.+.+. ...+...++..+.......+|.
T Consensus 13 ~~dr~~G~~~~l~~tP~-~~~~~~~g~~l~~~~~~~~~~~ii~~v~~~-~g~~~~~~~~~~~~~~~~~~l~~~~f~~l~~ 90 (152)
T TIGR01248 13 TIDREIGLLSRLWVLPI-HRASALLARIIAETIRAFIGTILILAIALA-LGFRFRNGVAAALLFLLIPSIFGIAFAALVM 90 (152)
T ss_pred HHHHHhHHHHHHHhCCC-ChHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HhcCCCCcHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45567777777777776 999999999999999999999988888864 4877653 2233445555666667777888
Q ss_pred HHHHhcCChhhHHHhhhHHHHHHHHhhhccccCCCcccccC
Q psy1567 423 LISCISSSVSVALSIGPPVIIPFLLFGGFFLNAGLMGVAIF 463 (463)
Q Consensus 423 ~i~~~~~~~~~a~~~~~~~~~~~~l~sG~~i~~~~lP~~l~ 463 (463)
.++...++.+..+ ....+++|+.++||.+.|.+++|+|++
T Consensus 91 ~~a~~~~~~~~~~-~~~~v~~pl~flsg~~~P~~~mP~wlq 130 (152)
T TIGR01248 91 AMALRKEGRFAME-ALELAQAAAAFLNPGATPIKLFPDWAQ 130 (152)
T ss_pred HHHHHcCCHHHHH-HHHHHHHHHHHHhhhhcCHHhCcHHHH
Confidence 8877766655544 457789999999999999999999974
No 21
>TIGR03062 pip_yhgE_Cterm YhgE/Pip C-terminal domain. This family contains the C-terminal domain of a family of multiple membrane-spanning proteins of Gram-positive bacteria. One member was shown to be a host protein essential for phage infection, so many members of this family are called "phage infection protein". A separate model, TIGR03061, represents the conserved N-terminal domain. The domains are separated by regions highly variable in both length and sequence, often containing extended heptad repeats as described in model TIGR03057.
Probab=98.67 E-value=2.2e-07 Score=84.60 Aligned_cols=98 Identities=14% Similarity=0.022 Sum_probs=84.1
Q ss_pred CchhHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCChhhHHHhhhHH
Q psy1567 362 YRVDVYFLCKTLAEVPIFLAIPVIFTSVMYYMVHLNPIFSRFLTATLIITMVSTVATSFGYLISCISSSVSVALSIGPPV 441 (463)
Q Consensus 362 y~~~~y~la~~~~~l~~~~~~~~i~~~i~y~~~g~~~~~~~f~~~~l~~~l~~~~~~~lg~~i~~~~~~~~~a~~~~~~~ 441 (463)
-+.+.++++|.+..++..+++.++...+.++..|+++. +++.+++..++..+++.++|.+++++.++... ....+.
T Consensus 57 ~~~~~~~~~k~~~~~~~~~~~~~~~~~i~~~~~g~~~~--~~~~~~l~~~l~~~~~~~lg~~l~~~~~~~~~--~~~~~~ 132 (208)
T TIGR03062 57 ARSWRIALAKLLPGGLIGVLQAIILYGVLILGLGLDPA--HPPATFGFAILTSLTFMAIIQFLVALFGNVGR--FLALVL 132 (208)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccC--CHHHHHHHHHHHHHHHHHHHHHHHHHhCcchH--HHHHHH
Confidence 47788999999999999999999999999999999864 57788888899999999999999999987544 444555
Q ss_pred HHHHHHhhhccccCCCcccccC
Q psy1567 442 IIPFLLFGGFFLNAGLMGVAIF 463 (463)
Q Consensus 442 ~~~~~l~sG~~i~~~~lP~~l~ 463 (463)
..++++++|.+.|.+++|+|++
T Consensus 133 ~~~~~~~sG~~~P~~~~P~~~~ 154 (208)
T TIGR03062 133 LVLQLGSSGGTFPIELLPAFFQ 154 (208)
T ss_pred HHHHHccCCCccchhhCHHHHH
Confidence 6678888999999999999863
No 22
>TIGR03518 ABC_perm_GldF gliding motility-associated ABC transporter permease protein GldF. Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldF is believed to be a ABC transporter permease protein (along with ATP-binding subunit, GldA and a sunstrate-binding subunit, GldG) and is linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockouts of GldF abolish the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility.
Probab=98.21 E-value=0.00018 Score=66.71 Aligned_cols=164 Identities=13% Similarity=0.102 Sum_probs=92.6
Q ss_pred HHHHHHhhhhhccChhhHHHHHHHHHHHHHHHHHHhcC---CCCChhhhhhhhHHHHHHHHHHHHHHHHHHHHHhhhh--
Q psy1567 275 KAVLWRSWLSVRKDPTLMKVRLLQTLMVSIMIGLIYFG---QNLDQDGVMNINGALFICLTNMTFQNVFAVISVFCSE-- 349 (463)
Q Consensus 275 ~~l~~R~~~~~~R~~~~~~~~l~~~~~~~~i~g~~f~~---~~~~~~~~~~~~~~lf~~~~~~~~~~~~~~i~~~~~e-- 349 (463)
+.+.||+++.+.|.|.....-.+..++.++.......+ .+.+..+.....+...+.. ...... -+...+.+|
T Consensus 2 ~~i~~kEl~~~f~sp~~yv~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~--~~~~p~-l~~~~ia~Er~ 78 (240)
T TIGR03518 2 KAIFKKEFNSFFSSPIGYLVIAVFLLANGLFLWVFPGDFNILDYGYADLTPFFSLAPWVF--LFLIPA-ITMRSFAEERK 78 (240)
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHhhhhhHHhcCcchHHHHHHHHHHHH--HHHHHH-HHHHHHHHHHH
Confidence 57899999999999999988777777766443222111 1112222222222211111 111111 112223233
Q ss_pred hhHHHHHhhCCCCchhHHHHHHHHHHHhHHHHHHH---HHHHHHHHhcCC---cchHHHHHHHHHHHHHHHHHHHHHHHH
Q psy1567 350 LPLFMREHQNGMYRVDVYFLCKTLAEVPIFLAIPV---IFTSVMYYMVHL---NPIFSRFLTATLIITMVSTVATSFGYL 423 (463)
Q Consensus 350 r~~~~rE~~~~~y~~~~y~la~~~~~l~~~~~~~~---i~~~i~y~~~g~---~~~~~~f~~~~l~~~l~~~~~~~lg~~ 423 (463)
++.+..-...+. +.+.+.+||.+.......+..+ ++..... ..|. +.+.+.+....+..++...+..++|.+
T Consensus 79 ~GTle~Llt~Pv-s~~~ivlgK~l~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~~~~~~aig~~ 156 (240)
T TIGR03518 79 LGTLELLLTRPI-SDWQIILGKYLGSLTLVILALLPTLLYVFTIY-QLGNPVGNLDIGSTFGSYIGLLLLGSVYTAIGLF 156 (240)
T ss_pred cCHHHHHHhCCC-ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HhcCccccccHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444 8999999999998765443332 1222221 2222 235666666666677777889999999
Q ss_pred HHHhcCChhhHHHhhhHHHH
Q psy1567 424 ISCISSSVSVALSIGPPVII 443 (463)
Q Consensus 424 i~~~~~~~~~a~~~~~~~~~ 443 (463)
+|++.+|..+|..++..+..
T Consensus 157 iSsl~~~q~~a~~~~~~~~~ 176 (240)
T TIGR03518 157 ASSLTENQIVAFIIAVFLCF 176 (240)
T ss_pred HHHHhchHHHHHHHHHHHHH
Confidence 99999998887665554433
No 23
>COG0842 ABC-type multidrug transport system, permease component [Defense mechanisms]
Probab=98.13 E-value=0.00013 Score=69.31 Aligned_cols=179 Identities=13% Similarity=0.194 Sum_probs=115.0
Q ss_pred hhhhccChhhHHHHHHHHHHHHHHHHHHhcCCC-------CC-hhhhhhhhHHHHHHHHHHHHHHHHHHHHHhhhhhhHH
Q psy1567 282 WLSVRKDPTLMKVRLLQTLMVSIMIGLIYFGQN-------LD-QDGVMNINGALFICLTNMTFQNVFAVISVFCSELPLF 353 (463)
Q Consensus 282 ~~~~~R~~~~~~~~l~~~~~~~~i~g~~f~~~~-------~~-~~~~~~~~~~lf~~~~~~~~~~~~~~i~~~~~er~~~ 353 (463)
+......+..........+..+...+..+.+.+ .+ ........|.+.+.............+.. .++++.+
T Consensus 42 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~g~~ 120 (286)
T COG0842 42 FQVLVDASALIIAPILYLIIFGLLFGLREGLSGRLYHWSNPSLDYLAFIVPGVILMSVLFSGIFSFSSALFR-EREFGTL 120 (286)
T ss_pred heeeeecccchhHHHHHHHHHHHHHHHHHHHhhccceecCCCcchhhhhhhHHHHHHHHHHHHHHHHHHHHh-HHhhCcH
Confidence 444455555555555556666666666655442 11 11122223444444444444333222111 3556666
Q ss_pred HHHhhCCCCchhHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHHHHHHHHHHH-HhcCChh
Q psy1567 354 MREHQNGMYRVDVYFLCKTLAEVPIFLAIPVIFTSVMYYMVHLNPIFSRFLTATLIITMVSTVATSFGYLIS-CISSSVS 432 (463)
Q Consensus 354 ~rE~~~~~y~~~~y~la~~~~~l~~~~~~~~i~~~i~y~~~g~~~~~~~f~~~~l~~~l~~~~~~~lg~~i~-~~~~~~~ 432 (463)
.|=..++. +...+++++.+.......+...+...+..+..|.. ....+.....+..+......++|.+++ ...++.+
T Consensus 121 ~~~~~sp~-~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~g~~-~~~~~~~~~~~~~~~~~~~~~lg~~~~~~~~~~~~ 198 (286)
T COG0842 121 ERLLVSPV-SRLFILLGKIVPYLVVASLIAGLVLLVIAFLLGVP-FLGSLLLLLLLLLLLLLATVALGLLLSTFAKSQLQ 198 (286)
T ss_pred HHHHhCCC-cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC-CCCcHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHH
Confidence 66666666 55777788888887777777777777777777733 344566666677777778888888666 3556788
Q ss_pred hHHHhhhHHHHHHHHhhhccccCCCcccccC
Q psy1567 433 VALSIGPPVIIPFLLFGGFFLNAGLMGVAIF 463 (463)
Q Consensus 433 ~a~~~~~~~~~~~~l~sG~~i~~~~lP~~l~ 463 (463)
.+..+..++..++.+++|.+.|.+.+|+|++
T Consensus 199 ~~~~~~~~~~~~~~~l~g~~~p~~~~p~~~~ 229 (286)
T COG0842 199 CASAVGNLLILPLGFLSGVFFPLELLPAWLQ 229 (286)
T ss_pred HHHHHHHHHHHHHHHHccccCchhhhHHHHH
Confidence 8889999999999999999999999999763
No 24
>PF03379 CcmB: CcmB protein; InterPro: IPR003544 Within mitochondria and bacteria, a family of related proteins is involved in the assembly of periplasmic c-type cytochromes: these include CycK [], CcmF [,], NrfE [] and CcbS []. These proteins may play a role in guidance of apocytochromes and haem groups for their covalent linkage by the cytochrome-c-haem lyase. Members of the family are probably integral membrane proteins, with up to 16 predicted transmembrane (TM) helices. The gene products of the hel and ccl loci have been shown to be required specifically for the biogenesis of c-type cytochromes in the Gram-negative photosynthetic bacterium Rhodobacter capsulatus []. Genetic and molecular analyses show that the hel locus contains at least 4 genes, helA, helB, helC and orf52. HelA is similar to the ABC transporters and helA, helB, and helC are proposed to encode an export complex []. It is believed that the hel-encoded proteins are required for the export of haem to the periplasm, where it is subsequently ligated to the c-type apocytochromes []. However, while CcmB and CcmC have the potential to interact with CcmA, the 3 gene products probably associating to form a complex with (CcmA)2-CcmB-CcmC stoichiometry, the substrate for the putative CcmABC-transporter is probably neither haem nor c-type apocytochromes []. Hydropathy analysis suggests the presence of 6 TM domains.; GO: 0015232 heme transporter activity, 0015886 heme transport, 0017004 cytochrome complex assembly, 0016020 membrane
Probab=98.01 E-value=0.00072 Score=61.49 Aligned_cols=156 Identities=19% Similarity=0.231 Sum_probs=102.3
Q ss_pred HHHHHHHhhhhhccChhhHHHHHHHHHHHHHHHHHHhcCCCCChhhh-hhhhHHHHHHHHHHHHHHHHHHHHHhhhhhhH
Q psy1567 274 FKAVLWRSWLSVRKDPTLMKVRLLQTLMVSIMIGLIYFGQNLDQDGV-MNINGALFICLTNMTFQNVFAVISVFCSELPL 352 (463)
Q Consensus 274 ~~~l~~R~~~~~~R~~~~~~~~l~~~~~~~~i~g~~f~~~~~~~~~~-~~~~~~lf~~~~~~~~~~~~~~i~~~~~er~~ 352 (463)
++.+.||+++.-+|++.....-+...+....++..... .+.+.. +...|.+..+..+.+..+. + ..
T Consensus 1 ~~~l~~kdl~le~r~~~~~~~~~lf~l~~i~if~~al~---~~~~~l~~~~~gllWi~~lfa~~l~~-~---------r~ 67 (215)
T PF03379_consen 1 FLALFRKDLRLEFRSKEGLLSMLLFFLLVIVIFSFALG---PDPDLLARVAPGLLWIALLFASLLGL-N---------RS 67 (215)
T ss_pred CHHHHHHHHHHHHccccchHHHHHHHHHHHHHHHhhcC---CchhHHHHHhHHHHHHHHHHHHHHHh-h---------Hh
Confidence 36789999999999998887777777666666666543 233222 3334555555555444433 1 23
Q ss_pred HHHHhhCCC--------CchhHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy1567 353 FMREHQNGM--------YRVDVYFLCKTLAEVPIFLAIPVIFTSVMYYMVHLNPIFSRFLTATLIITMVSTVATSFGYLI 424 (463)
Q Consensus 353 ~~rE~~~~~--------y~~~~y~la~~~~~l~~~~~~~~i~~~i~y~~~g~~~~~~~f~~~~l~~~l~~~~~~~lg~~i 424 (463)
+.+|+++|. .++.+++++|.+.......+..++...+...+.|.+ ...+..+.+.+.+.+.+...+|.+.
T Consensus 68 f~~E~e~G~L~~l~l~~~~~~~i~l~K~l~~~~~~~~~~~i~~pl~~~l~~~~--~~~~~~~~~~l~lgt~gl~~igtl~ 145 (215)
T PF03379_consen 68 FAREYEDGTLEQLLLSPVPRSAIFLGKLLANWLLLFLPELIIFPLFALLFNLP--ISSWPLLLLSLLLGTLGLAAIGTLL 145 (215)
T ss_pred HHHHHhCCcHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC--hhHHHHHHHHHHHHhHHHHHHHHHH
Confidence 455555554 267889999999998877776666666666676766 4566777778888888888888888
Q ss_pred HHhcCChhhHHHhhhHHHHH
Q psy1567 425 SCISSSVSVALSIGPPVIIP 444 (463)
Q Consensus 425 ~~~~~~~~~a~~~~~~~~~~ 444 (463)
+++.-+......+.+++.+|
T Consensus 146 aal~~~~r~~~~Ll~lL~lP 165 (215)
T PF03379_consen 146 AALAAGARGREILLPLLLLP 165 (215)
T ss_pred HHHHHhccccCHHHHHHHHH
Confidence 87775444444444444443
No 25
>COG1682 TagG ABC-type polysaccharide/polyol phosphate export systems, permease component [Carbohydrate transport and metabolism / Cell envelope biogenesis, outer membrane]
Probab=97.81 E-value=0.0034 Score=58.81 Aligned_cols=183 Identities=9% Similarity=0.073 Sum_probs=120.0
Q ss_pred HHHHHHHHHHHhhhhhcc-ChhhHHHHHHHHHHHHHHHHHHhcCC-CCC-hh-hhhhhhHHHHHHHHHHHHHHHHHHHHH
Q psy1567 270 WWTQFKAVLWRSWLSVRK-DPTLMKVRLLQTLMVSIMIGLIYFGQ-NLD-QD-GVMNINGALFICLTNMTFQNVFAVISV 345 (463)
Q Consensus 270 ~~~q~~~l~~R~~~~~~R-~~~~~~~~l~~~~~~~~i~g~~f~~~-~~~-~~-~~~~~~~~lf~~~~~~~~~~~~~~i~~ 345 (463)
.++....|.+|+.|...| +.-.....++.|+++.++.+.+|... +.+ .+ ...-..|.+.......+.+ .....
T Consensus 16 ~~~li~~L~~~eik~Ryr~s~LG~~W~~l~P~~~~~~~~~vf~~l~~~~~~~~~~~l~~G~~~w~f~~~~i~---~~~~s 92 (263)
T COG1682 16 YRRLIGALVKREIKTRYRRSVLGYLWSLLNPLLMILVYTLVFGALLRSPGLNFLAYLLAGLILWFFFSEAIS---EGAGS 92 (263)
T ss_pred HHHHHHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHHHHHHHH---hHHHH
Confidence 456677888999998544 66677778899999999999988765 221 11 1111123322222222222 22333
Q ss_pred hhhhhhHHHHHhhCCCCchhHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy1567 346 FCSELPLFMREHQNGMYRVDVYFLCKTLAEVPIFLAIPVIFTSVMYYMVHLNPIFSRFLTATLIITMVSTVATSFGYLIS 425 (463)
Q Consensus 346 ~~~er~~~~rE~~~~~y~~~~y~la~~~~~l~~~~~~~~i~~~i~y~~~g~~~~~~~f~~~~l~~~l~~~~~~~lg~~i~ 425 (463)
+......+.|- ..++..+.+++++.++....+..++.....-+..+.+ ...+........+..+.+.++|..+|
T Consensus 93 ~~~n~~li~k~----~~p~~~~~~~~~~~~~~~~~i~~iiil~~~i~~~~~~--s~~~l~~~~~l~~l~l~~~g~~l~~a 166 (263)
T COG1682 93 VVANAALIKKI----NFPPLILPVARTLSRLFNFLIHLIIILIFLIILGVEP--SWHWLLLLPALLLLILFSVGLGLILA 166 (263)
T ss_pred hhhhHHHHhCC----CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCC--cHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444444332 1378999999999999887777766665555554443 34455565666666777788888888
Q ss_pred HhcCChhhHHHhhhHHHHHHHHhhhccccCCCcccc
Q psy1567 426 CISSSVSVALSIGPPVIIPFLLFGGFFLNAGLMGVA 461 (463)
Q Consensus 426 ~~~~~~~~a~~~~~~~~~~~~l~sG~~i~~~~lP~~ 461 (463)
+++.-..=-..+...+..+.+..+|.+-|.+++|.-
T Consensus 167 ~l~v~fRD~~~i~~~v~~~~f~~sPIi~~~~~~p~~ 202 (263)
T COG1682 167 SLGVRFRDLGQILGVVLQLLFFLSPIIYPVSNLPEQ 202 (263)
T ss_pred hHhhhcccHHHHHHHHHHHHHHhCceeeehhhccHH
Confidence 887665555667777888889999999999999964
No 26
>PF12679 ABC2_membrane_2: ABC-2 family transporter protein
Probab=97.58 E-value=0.008 Score=56.96 Aligned_cols=172 Identities=14% Similarity=0.117 Sum_probs=89.1
Q ss_pred HHHHHhhhhhccChhhHHHHHHHHHH-HHHHHHHHhcCCCCC--h--hhhhhhhHHH--------------HHHHHHHHH
Q psy1567 276 AVLWRSWLSVRKDPTLMKVRLLQTLM-VSIMIGLIYFGQNLD--Q--DGVMNINGAL--------------FICLTNMTF 336 (463)
Q Consensus 276 ~l~~R~~~~~~R~~~~~~~~l~~~~~-~~~i~g~~f~~~~~~--~--~~~~~~~~~l--------------f~~~~~~~~ 336 (463)
.+.|++++..+|+|.......+..++ ....+-........+ . .+........ +..... .+
T Consensus 2 ~i~~~E~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~l 80 (277)
T PF12679_consen 2 AIAKKEFRELFRSRRFWILLIIFLLLLFILAFYPILQAQAQSQAFQTQELIPALENLQSFNFAESAKFFFSIVSFLG-PL 80 (277)
T ss_pred hhHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhHHHHHHHhhhhhhhhhhHHHHHHHHH-HH
Confidence 57899999999999887777666655 222222222211111 0 0101100000 111111 11
Q ss_pred HHHHHHHHHhhhhh--hHHHHHhhCCCCchhHHHHHHHHHHHhHHHH---HHHHH-H--HHHHHhcCCcchHHHHHHHHH
Q psy1567 337 QNVFAVISVFCSEL--PLFMREHQNGMYRVDVYFLCKTLAEVPIFLA---IPVIF-T--SVMYYMVHLNPIFSRFLTATL 408 (463)
Q Consensus 337 ~~~~~~i~~~~~er--~~~~rE~~~~~y~~~~y~la~~~~~l~~~~~---~~~i~-~--~i~y~~~g~~~~~~~f~~~~l 408 (463)
.+...+...+.+|| +.+. ---+..+++..++++|.+......+. ..++- . .......|.+.+...+....+
T Consensus 81 ~~~~l~~~~ia~E~e~gTi~-~lls~PisR~~i~~gK~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 159 (277)
T PF12679_consen 81 FAIILASDLIAGERERGTIE-LLLSKPISRSEILLGKFLAAILFSLLLLIALLVGYLLTLVLIAISGIPIDLSSFLLLLL 159 (277)
T ss_pred HHHHHHHHHHHhccccCEee-HHhcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccHHHHHHHHH
Confidence 12222233343332 2211 12234468999999999999877432 11111 1 112222444555555554444
Q ss_pred HHHHHHH---HHHHHHHHHHHhcCChhhHHHhhhHHHHHHHHhh
Q psy1567 409 IITMVST---VATSFGYLISCISSSVSVALSIGPPVIIPFLLFG 449 (463)
Q Consensus 409 ~~~l~~~---~~~~lg~~i~~~~~~~~~a~~~~~~~~~~~~l~s 449 (463)
...+..+ +..+++.++|++.+|...|...+..+.+......
T Consensus 160 ~~~~~~~~~~~~~sl~~~~S~~~~~~~~a~~~~~~~~~~~~~~~ 203 (277)
T PF12679_consen 160 LFVLLLLAVLVFISLGLLISSLFRSSASAILASLGLLFLLFFLY 203 (277)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHCcHHHHHHHHHHHHHHHHHHH
Confidence 4444433 5689999999999998888887776665554433
No 27
>PRK15176 Vi polysaccharide export inner membrane protein VexB; Provisional
Probab=97.57 E-value=0.0084 Score=56.39 Aligned_cols=186 Identities=10% Similarity=0.072 Sum_probs=93.4
Q ss_pred HHHHHHHHHhhhhhcc-ChhhHHHHHHHHHHHHHHHHHHhcCCCCC-hhhhhhhhHHHHHHHHHHHHHHHHHHHHHhhhh
Q psy1567 272 TQFKAVLWRSWLSVRK-DPTLMKVRLLQTLMVSIMIGLIYFGQNLD-QDGVMNINGALFICLTNMTFQNVFAVISVFCSE 349 (463)
Q Consensus 272 ~q~~~l~~R~~~~~~R-~~~~~~~~l~~~~~~~~i~g~~f~~~~~~-~~~~~~~~~~lf~~~~~~~~~~~~~~i~~~~~e 349 (463)
+..+.+.+|++|...| ..-.....++.|+++.++++.+|...... ..+ ..+..|..+....+.-...++..-.+-
T Consensus 19 ~li~~L~~rdlk~ry~~s~LG~~W~~l~Pll~~~v~~~vF~~~~~~~~~~---~~~~~fl~~Gl~pw~~fs~~~~~~~~a 95 (264)
T PRK15176 19 ELIILLMSRDIKTRYNGNLLNYMMVLAVPLVWISITVISFQYLNRSVPIS---TDDISFVIAGILPYLLFRYTITATMRT 95 (264)
T ss_pred HHHHHHHHHHHHHHHCCchHHHHHHHHHHHHHHHHHHHHHHHHcccCCCC---cchHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455689999998655 46677788999999998888887643211 000 011234443333333221211111100
Q ss_pred hhHHHHHhhCCCCchhHHHHHHHHHHHhHHHHHHHHHHHHHHHhc-CCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q psy1567 350 LPLFMREHQNGMYRVDVYFLCKTLAEVPIFLAIPVIFTSVMYYMV-HLNPIFSRFLTATLIITMVSTVATSFGYLISCIS 428 (463)
Q Consensus 350 r~~~~rE~~~~~y~~~~y~la~~~~~l~~~~~~~~i~~~i~y~~~-g~~~~~~~f~~~~l~~~l~~~~~~~lg~~i~~~~ 428 (463)
..+..+..--+-....-..++....+....++..++...+.+... +..++. ........++..+.+.++|.++|++.
T Consensus 96 ~si~~~~~li~kv~~p~~i~p~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~--~l~~~~~~ll~~l~~~glglils~l~ 173 (264)
T PRK15176 96 HSFSTSLAVVSQVKKRHVIFSLAAIEFVNAVIIYIIISLINFLIFSRWEAQK--PFLIFEGMVIAWLLGLSFGYFCDALS 173 (264)
T ss_pred HHHHHHhhcCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCChhh--HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 011111111111123333344444444333333333222222222 333222 23333333445555667777776665
Q ss_pred CChhhHHHhhhHHHHHHHHhhhccccCCCccccc
Q psy1567 429 SSVSVALSIGPPVIIPFLLFGGFFLNAGLMGVAI 462 (463)
Q Consensus 429 ~~~~~a~~~~~~~~~~~~l~sG~~i~~~~lP~~l 462 (463)
.-..-...+..++..+.+..||.+-|.+.+|+++
T Consensus 174 v~~rDi~~i~~~~l~~lf~~SpI~y~~~~vp~~~ 207 (264)
T PRK15176 174 ERFPLVYKAVPVMLRPMFLISAVFYTANELPYSL 207 (264)
T ss_pred HhCccHHHHHHHHHHHHHHHhhHhhhHHhCcHHH
Confidence 4433344556677788889999999999999864
No 28
>PF12698 ABC2_membrane_3: ABC-2 family transporter protein; PDB: 2P0S_B 3CNI_A.
Probab=97.50 E-value=2.6e-05 Score=76.08 Aligned_cols=112 Identities=23% Similarity=0.279 Sum_probs=0.0
Q ss_pred Hhhhhh--hHHHHHhhCCCCchhHHHHHHHHHHHhHHHHHHHHHHHHHHHhcC---CcchHHHHHHHHHHHHHHHHHHHH
Q psy1567 345 VFCSEL--PLFMREHQNGMYRVDVYFLCKTLAEVPIFLAIPVIFTSVMYYMVH---LNPIFSRFLTATLIITMVSTVATS 419 (463)
Q Consensus 345 ~~~~er--~~~~rE~~~~~y~~~~y~la~~~~~l~~~~~~~~i~~~i~y~~~g---~~~~~~~f~~~~l~~~l~~~~~~~ 419 (463)
...+|| ++..|-+.+|. +...|+++|.+......+++.++..++ ..| ++.. +++..++..++..++..+
T Consensus 181 ~i~~ek~~~~~~~l~~~~~-~~~~~~~~~~l~~~~~~~i~~~i~~~i---~~~~~~~~~~--~~~~~~l~~~l~~~~~~~ 254 (344)
T PF12698_consen 181 SIVEEKESGTRERLLSSGV-SPWSYWLSKFLAYFLVSLIQSLIIIII---IFGISGIPFG--NFLLLLLLLLLFSLAFIS 254 (344)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred hhhhHhhhhhhHhhhcccC-CHHHHHHHHHHHHhhHHHHHHHHHHHH---HhccccCccc--chHHHHHHHHHHHHHHHH
Confidence 334444 44555556665 999999999999999999988877774 444 4433 566677888888999999
Q ss_pred HHHHHHHhcCChhhHHHhhhHHHHHHHHhhhccccCCCccccc
Q psy1567 420 FGYLISCISSSVSVALSIGPPVIIPFLLFGGFFLNAGLMGVAI 462 (463)
Q Consensus 420 lg~~i~~~~~~~~~a~~~~~~~~~~~~l~sG~~i~~~~lP~~l 462 (463)
++.+++.++++...+..+++++.++++.++|...|.+++|+++
T Consensus 255 ~~~~is~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 297 (344)
T PF12698_consen 255 FGFLISSFFKNSSTAISVASIIILLLSFLSGGFFPLSSLPSFL 297 (344)
T ss_dssp -------------------------------------------
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhHHhhHHHH
Confidence 9999999999999999998888888888888888888888775
No 29
>TIGR01190 ccmB heme exporter protein CcmB. This model describes the cyt c biogenesis protein encoded by ccmB in bacteria. Bacterial c-type cytochromes are located on the periplasmic side of the cytoplasmic membrane. Several gene products encoded in a locus designated as 'ccm' are implicated in the transport and assembly of the functional cytochrome C. This cluster includes genes: ccmA;B;C;D;E;F;G and H. The posttranslational pathway includes the transport of heme moiety, the secretion of the apoprotein and the covalent attachment of the heme with the apoprotein. The proteins ccmA and B represent an ABC transporter; ccmC and D participate in heme transfer to ccmE, which function as a periplasmic heme chaperone. The presence of ccmF, G and H is suggested to be obligatory for the final functional assembly of cytochrome C.
Probab=97.31 E-value=0.025 Score=50.93 Aligned_cols=152 Identities=12% Similarity=0.130 Sum_probs=98.1
Q ss_pred HHHhhhhhccChhhHHHHHHHHHHHHHHHHHHhcCCCCChhhhhhh-hHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHH
Q psy1567 278 LWRSWLSVRKDPTLMKVRLLQTLMVSIMIGLIYFGQNLDQDGVMNI-NGALFICLTNMTFQNVFAVISVFCSELPLFMRE 356 (463)
Q Consensus 278 ~~R~~~~~~R~~~~~~~~l~~~~~~~~i~g~~f~~~~~~~~~~~~~-~~~lf~~~~~~~~~~~~~~i~~~~~er~~~~rE 356 (463)
.+|+++.-+|++.....-++..++...++..-+. .|.+..+.. .|++..+..+....+. ...|.+|
T Consensus 2 ~~kDl~l~~r~~~~~~~~llF~l~vi~lf~la~g---p~~~~l~~~apgilWva~lfa~ll~l----------~rlF~~d 68 (211)
T TIGR01190 2 IRRDLRLAFRAGGGILNPLWFFLIVVTLFPFGVG---PELKLLSRIAPGIVWVGALLSSLLSL----------DRLFRDD 68 (211)
T ss_pred cHHHHHHHHcccchHHHHHHHHHHHHHHHHhhcC---CcHHHHHHHHHHHHHHHHHHHHHHHh----------hHHHHHH
Confidence 5899999999988876666666655555554443 343333333 3555555555444433 2244555
Q ss_pred hhCCC--------CchhHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q psy1567 357 HQNGM--------YRVDVYFLCKTLAEVPIFLAIPVIFTSVMYYMVHLNPIFSRFLTATLIITMVSTVATSFGYLISCIS 428 (463)
Q Consensus 357 ~~~~~--------y~~~~y~la~~~~~l~~~~~~~~i~~~i~y~~~g~~~~~~~f~~~~l~~~l~~~~~~~lg~~i~~~~ 428 (463)
+++|. .+....+++|.+.......+.-++.....-.+.|.+. .....+.+.+.+.+.....+|.+.+++.
T Consensus 69 ~e~g~Le~lll~p~~~~~i~l~K~la~wl~~~l~~~l~~p~~~~~l~~~~--~~~~~l~l~LllGt~~Ls~igtl~aALt 146 (211)
T TIGR01190 69 FEDGSLDLLMLSPTPLELTVLAKVLAHWLVTGLPLVLLSPLLALLLNLDV--PAWGALALTLLLGTPALSFLGAIGAALT 146 (211)
T ss_pred HhCCcHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCc--hHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55554 3789999999999987766666666666666777764 3346677788888888888888888887
Q ss_pred CChhhHHHhhhHHHHH
Q psy1567 429 SSVSVALSIGPPVIIP 444 (463)
Q Consensus 429 ~~~~~a~~~~~~~~~~ 444 (463)
-+....-.+.+++.+|
T Consensus 147 ~g~r~~~~Ll~lL~lP 162 (211)
T TIGR01190 147 VGLKRGGLLLSLLVLP 162 (211)
T ss_pred HhccCCchHHHHHHHH
Confidence 5544433444444444
No 30
>COG4587 ABC-type uncharacterized transport system, permease component [General function prediction only]
Probab=97.02 E-value=0.035 Score=50.16 Aligned_cols=192 Identities=10% Similarity=0.093 Sum_probs=107.5
Q ss_pred CHHHHHHHHHHHhhhhhccChhhHHHHHHHHHHHHHHHHHHhcCCCCChh-----hhhhhhHHHHHHHHHHHHHHHHHHH
Q psy1567 269 NWWTQFKAVLWRSWLSVRKDPTLMKVRLLQTLMVSIMIGLIYFGQNLDQD-----GVMNINGALFICLTNMTFQNVFAVI 343 (463)
Q Consensus 269 s~~~q~~~l~~R~~~~~~R~~~~~~~~l~~~~~~~~i~g~~f~~~~~~~~-----~~~~~~~~lf~~~~~~~~~~~~~~i 343 (463)
++++..+.+.+-.++...-.+...+.-.+...+-+++.+.++..+-++.+ ...+.....+.+.+....... -
T Consensus 3 ~f~rky~~l~~v~~~~~~eYR~~~il~~l~~~l~~~l~~~lW~a~adss~~i~glt~~d~~~Y~~~~fvv~~lt~~---~ 79 (268)
T COG4587 3 KFWRKYRVLLSVGLASMLEYRVNFILWRLSGLLPLILMGYLWVAVADSSPQINGLTPGDVARYFFATFVVRQLTTV---W 79 (268)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhccCccccCcCHHHHHHHHHHHHHHHHHHHH---H
Confidence 57888888888888887777777777777777777777777765522222 112222333333222222222 2
Q ss_pred HHhhhhhhHHHHHhhCCCCchhHHHHHHHHHHHhHHHHHH---HHHHHHHHHhcCC----cchHHHHHHHHHHHHHHHHH
Q psy1567 344 SVFCSELPLFMREHQNGMYRVDVYFLCKTLAEVPIFLAIP---VIFTSVMYYMVHL----NPIFSRFLTATLIITMVSTV 416 (463)
Q Consensus 344 ~~~~~er~~~~rE~~~~~y~~~~y~la~~~~~l~~~~~~~---~i~~~i~y~~~g~----~~~~~~f~~~~l~~~l~~~~ 416 (463)
....-|+++-.-|.....-+|..|.......+.+...... .+-.+..|.+.+- ..+......+.+...+....
T Consensus 80 ~~~ef~~eV~~G~l~~~LLrPld~l~~~~a~~~~~~~~~~lp~~~vL~lifa~l~~~~~~~l~~~~l~~~~l~la~~~~~ 159 (268)
T COG4587 80 SIWEFEKEVREGELSPRLLRPLDYLFHELAAHLGERASRGLPFLLVLLLIFALLYGAILQFLSPWTLYLFVLALALLFLL 159 (268)
T ss_pred HHHHHHHHHHcCeecHHhcCcccHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhhHHhhcCCHHHHHHHHHHHHHHHHH
Confidence 2222334454444444444555565555555554433332 2222223333222 12334444444444443334
Q ss_pred HHHHHHHHHHhcCChhhHHHhhhHHHHHHHHhhhccccCCCcccccC
Q psy1567 417 ATSFGYLISCISSSVSVALSIGPPVIIPFLLFGGFFLNAGLMGVAIF 463 (463)
Q Consensus 417 ~~~lg~~i~~~~~~~~~a~~~~~~~~~~~~l~sG~~i~~~~lP~~l~ 463 (463)
-......+++.+--.+-|+.+.-..-..-.++||..+|++-.|+|++
T Consensus 160 ~F~i~f~~~~~aFwt~~as~l~~~~~~l~~f~sG~l~PL~~fP~~v~ 206 (268)
T COG4587 160 RFLIQFTFGLFAFWTERASSLGKFWWLLYAFLSGSLAPLAFFPDWVR 206 (268)
T ss_pred HHHHHHHHHHHHhhccchhhHHHHHHHHHHHhccccchHHhChHHHH
Confidence 44455555555545577788888888888999999999999999864
No 31
>TIGR03861 phenyl_ABC_PedC alcohol ABC transporter, permease protein. Members of this protein family, part of a larger class of efflux-type ABC transport permease proteins, are found exclusively in genomic contexts with pyrroloquinoline-quinone (PQQ) biosynthesis enzymes and/or PQQ-dependent alcohol dehydrogenases, such as the phenylethanol dehydrogenase PedE of Pseudomonas putida U. Members include PedC, an apparent phenylethanol transport protein whose suggested role is efflux to limit intracellular concentrations of toxic metabolites during phenylethanol catalysis.
Probab=96.88 E-value=0.037 Score=51.80 Aligned_cols=124 Identities=15% Similarity=0.182 Sum_probs=78.1
Q ss_pred HHHHHHHHHHhhHhhccChhHHHHHHHHHHHHHHHHHHHHhCC-CCC---c-cccchh-----hhHHHHHHHHHHHHHHH
Q psy1567 102 WTQFKAVLWRSWLSVRKDPTLMKVRLLQTLMVSIMIGLIYFGQ-NLD---Q-DGVMNI-----NGALFICLTNMTFQNVF 171 (463)
Q Consensus 102 ~~q~~~L~~R~~~~~~Rn~~~~~~r~~~~~~~ali~g~~f~~~-~~~---~-~~~~~~-----~g~~f~~~~~~~~~~~~ 171 (463)
++++..+.+|.++...|||..+..-+++.++.-+++|.+|... +.+ + .+..+. .|++-+......+.
T Consensus 1 ~~~~~~l~~rel~~~~r~~~~~~~~ll~Pl~~l~~f~~~f~~~~~~~~~~~~~~~~~y~~fl~pGi~~~~~~~~~~~--- 77 (253)
T TIGR03861 1 LICFNGIVLREALRFVQQRSRFLSALVRPLLWLLVFAAGFRAALGISIIEPYDTYITYEVYIVPGLCCMILLFNGMQ--- 77 (253)
T ss_pred ChHHHHHHHHHHHHHHHhhHHHHHHHHhHHHHHHHHHHHHHhhccccccccCCCCCCHHHHHHHHHHHHHHHHHHHH---
Confidence 3678999999999999999999999999999999999998553 211 0 010111 12221212221111
Q ss_pred HHHHHhhhh--hhHHHHhhcCCCcchhHHHHHHHhHHhhHHHHHHHHHHHHHhhcccccchh
Q psy1567 172 AVISVFCSE--LPLFMREHQNGMYRVDVYFLCKTLAEVPIFLAIPVIFTSVMYYMVHLNPIF 231 (463)
Q Consensus 172 ~~i~~f~~e--r~i~~rE~~~g~Y~~~~Y~~a~~~~~~p~~~~~~~v~~~i~Y~~~gl~~~~ 231 (463)
++. ....| +..+.+=+.... +...+.++|.+.+....+++.++...+.+. .|.+.+.
T Consensus 78 ~~~-~~~~~r~~g~~~~l~~~p~-~~~~~~l~~~l~~~~~~~~~~~i~~~~~~~-~g~~~~~ 136 (253)
T TIGR03861 78 SSL-SMVYDREMGSMRVLLTSPL-PRPFLLFCKLLASALISLLQVYAFLAIAAL-VGVQPPV 136 (253)
T ss_pred hhh-HhHHhHhcCHHHHHhhCCC-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HcCCCCc
Confidence 221 12233 335555555555 777899999999988888877666555543 3665543
No 32
>TIGR01247 drrB daunorubicin resistance ABC transporter membrane protein. This model describes daunorubicin resistance ABC transporter, membrane associated protein in bacteria and archaea. The protein associated with effux of the drug, daunorubicin. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. In eukaryotes proteins of similar function include p-gyco proteins, multidrug resistance protein etc.
Probab=96.70 E-value=0.048 Score=50.41 Aligned_cols=115 Identities=17% Similarity=0.204 Sum_probs=73.1
Q ss_pred HhhHhhccChhHHHHHHHHHHHHHHHHHHHHhCCC-CC--ccccchh----hhHHHHHHHHHHHHHHHHHHHH-hhhhhh
Q psy1567 111 RSWLSVRKDPTLMKVRLLQTLMVSIMIGLIYFGQN-LD--QDGVMNI----NGALFICLTNMTFQNVFAVISV-FCSELP 182 (463)
Q Consensus 111 R~~~~~~Rn~~~~~~r~~~~~~~ali~g~~f~~~~-~~--~~~~~~~----~g~~f~~~~~~~~~~~~~~i~~-f~~er~ 182 (463)
|+++...|||.....-+++.++..+++|..+-+.- .+ +.+.... .|++.+.....+.. .+... .-+|+.
T Consensus 1 re~~~~~r~~~~~~~~l~~Pl~~~~~~~~~~~~~~~~~~~~~g~~y~~fl~~G~~~~~~~~~~~~---~~~~~~~~~~~g 77 (236)
T TIGR01247 1 RELKRFIRSRSRIVGSILNPLLWLIFFGKGWSGAFRFPMIFGGVDYMTYLVPGIVAMTVFNMSFF---SGISVIWDRQFG 77 (236)
T ss_pred CchHHHHHhhHHHHHHHHHHHHHHHHHHHHhhcccccccccCCCcHHHHHHHHHHHHHHHHHHHH---hhhHHHHHHHhC
Confidence 77888999999999999999999999999876542 11 1222111 12222222222222 11111 112333
Q ss_pred HHHHhhcCCCcchhHHHHHHHhHHhhHHHHHHHHHHHHHhhcccccc
Q psy1567 183 LFMREHQNGMYRVDVYFLCKTLAEVPIFLAIPVIFTSVMYYMVHLNP 229 (463)
Q Consensus 183 i~~rE~~~g~Y~~~~Y~~a~~~~~~p~~~~~~~v~~~i~Y~~~gl~~ 229 (463)
.++|=+.... +...|+++|.+.+.+..++..++...+.+++.+.+.
T Consensus 78 ~~~~~~~~P~-~~~~~~l~~~l~~~~~~~~~~~i~~~i~~~~~~~~~ 123 (236)
T TIGR01247 78 FLKEILVAPA-SRVEMIVGRILGGSTVAMIQGAIILALSFIVAILKP 123 (236)
T ss_pred HHHHHHhCCC-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 3333333333 678999999999999999999999999988877554
No 33
>TIGR03733 lanti_perm_MutG lantibiotic protection ABC transporter permease subunit, MutG family. Model TIGR03731 represents the family of all lantibiotics related to gallidermin, including epidermin, mutatin, and nisin. This protein family is largely restricted to gallidermin-family lantibiotic cassettes, but also include orphan transporter cassettes in species that lack candidate lantibiotic precursor and synthetase genes. In most species, this subunit is paralogous to an adjacent gene modeled separate by TIGR03732, while in some species only one subunit is found.
Probab=96.68 E-value=0.42 Score=44.56 Aligned_cols=158 Identities=14% Similarity=0.109 Sum_probs=88.1
Q ss_pred HHHhhhhhccChhhHHHHHHHHHHHHHHHHHHhcCCCCChhhh-hhhhHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHH
Q psy1567 278 LWRSWLSVRKDPTLMKVRLLQTLMVSIMIGLIYFGQNLDQDGV-MNINGALFICLTNMTFQNVFAVISVFCSELPLFMRE 356 (463)
Q Consensus 278 ~~R~~~~~~R~~~~~~~~l~~~~~~~~i~g~~f~~~~~~~~~~-~~~~~~lf~~~~~~~~~~~~~~i~~~~~er~~~~rE 356 (463)
.+-+++...|.+.... .++.|++..++....+.+.+.++... ...... ..+......+.......-.+|+..-.|.
T Consensus 3 l~aE~lK~Krt~~~~l-~l~~Pl~~~ll~~~~~~~~~~~~~~~~~~~~~~--~~~~~P~~i~i~~~~~~~~E~~~~~~k~ 79 (248)
T TIGR03733 3 LKSDFIKLKRTSILWI-HICAPILGSLLFLLYYSFRGLDNIDIIEGYFQV--LAIVLPLLIGIVCGMVVEQEESAGNFKN 79 (248)
T ss_pred HHHHHHHHcchhHHHH-HHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHhChHHH
Confidence 4556677777765555 88888877777654333333222111 111111 1111122222222222223333344555
Q ss_pred hhCCCCchhHHHHHHHHHHHhHHHHHHHHHHHHHH-----HhcCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCh
Q psy1567 357 HQNGMYRVDVYFLCKTLAEVPIFLAIPVIFTSVMY-----YMVHLNPIFSRFLTATLIITMVSTVATSFGYLISCISSSV 431 (463)
Q Consensus 357 ~~~~~y~~~~y~la~~~~~l~~~~~~~~i~~~i~y-----~~~g~~~~~~~f~~~~l~~~l~~~~~~~lg~~i~~~~~~~ 431 (463)
..+...+...+++||.+.-+...++..++...+.. ...+-+.+...++...+.++++++....++..++....+
T Consensus 80 ll~~p~s~~~~~~aK~l~~~~~~~is~~l~~~~~~~g~~~i~~~~~~~~~~~l~~~~~l~~~sl~~~~l~l~ls~~~g~- 158 (248)
T TIGR03733 80 LLSTTKSKYKAYLSKLLLLLLCGFFSTFLAIGIFALGFKYLLKVANLPLSLFLIAALLLIIGSLFLYIIHLFVSFAFGM- 158 (248)
T ss_pred HhhcCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC-
Confidence 55555688999999999887776665554322222 111223355677788888899999999999999999875
Q ss_pred hhHHHhhh
Q psy1567 432 SVALSIGP 439 (463)
Q Consensus 432 ~~a~~~~~ 439 (463)
..+..++.
T Consensus 159 ~~si~ig~ 166 (248)
T TIGR03733 159 GASIGIGI 166 (248)
T ss_pred chhHHHHH
Confidence 34444444
No 34
>PF12730 ABC2_membrane_4: ABC-2 family transporter protein
Probab=96.17 E-value=0.91 Score=40.77 Aligned_cols=86 Identities=16% Similarity=0.192 Sum_probs=51.0
Q ss_pred CchhHHHHHHHHHHHhHHHHHHHHHHHHH---HHhcCC-cchHH---H-HHHHHHHHHHHHHHHHHHHHHHHHhcCChhh
Q psy1567 362 YRVDVYFLCKTLAEVPIFLAIPVIFTSVM---YYMVHL-NPIFS---R-FLTATLIITMVSTVATSFGYLISCISSSVSV 433 (463)
Q Consensus 362 y~~~~y~la~~~~~l~~~~~~~~i~~~i~---y~~~g~-~~~~~---~-f~~~~l~~~l~~~~~~~lg~~i~~~~~~~~~ 433 (463)
.++..++.+|.++.....++..++...+. ..+.+. +.+.. + ...+.+..++.......+ .+++...+|...
T Consensus 87 ~~r~~~~~~K~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~i~~~~~~~~~ 165 (232)
T PF12730_consen 87 ISRKKIFLAKFIVILIIILLLFLISFLISLLIGLLFGFSGFDYSSLLQYLISYLLLFLLLSLFISLL-LFISSLFRNSIV 165 (232)
T ss_pred CCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCcHhHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHhhHHH
Confidence 47999999999999877666665543332 233332 22322 2 223444444444455555 888999998777
Q ss_pred HHHhhhHHHHHHHHh
Q psy1567 434 ALSIGPPVIIPFLLF 448 (463)
Q Consensus 434 a~~~~~~~~~~~~l~ 448 (463)
+..++.+......+.
T Consensus 166 ~i~~~~~~~~~~~~~ 180 (232)
T PF12730_consen 166 AIIISILLFLLGIIL 180 (232)
T ss_pred HHHHHHHHHHHHHHH
Confidence 766555555444433
No 35
>COG2386 CcmB ABC-type transport system involved in cytochrome c biogenesis, permease component [Posttranslational modification, protein turnover, chaperones]
Probab=95.97 E-value=0.9 Score=40.22 Aligned_cols=155 Identities=15% Similarity=0.142 Sum_probs=99.9
Q ss_pred HHHHHHHHHhhhhhccChhhHHHHHHHHHHHHHHHHHHhcCCCCChhhhhhh-hHHHHHHHHHHHHHHHHHHHHHhhhhh
Q psy1567 272 TQFKAVLWRSWLSVRKDPTLMKVRLLQTLMVSIMIGLIYFGQNLDQDGVMNI-NGALFICLTNMTFQNVFAVISVFCSEL 350 (463)
Q Consensus 272 ~q~~~l~~R~~~~~~R~~~~~~~~l~~~~~~~~i~g~~f~~~~~~~~~~~~~-~~~lf~~~~~~~~~~~~~~i~~~~~er 350 (463)
..+..+.+|++|.-+|.+.....-+........++..-+ |+|.+-.... -|++.......+..+. .
T Consensus 2 ~~~~~l~~rdLrl~~R~~~~~~~~l~F~l~Vi~lfp~~v---Gpd~~~la~iaPgilWia~lLA~lL~l----------~ 68 (221)
T COG2386 2 MAFLALFKRDLRLEFRAKAGILNPLLFFLLVITLFPLAV---GPDPQLLARIAPGILWIAALLASLLGL----------E 68 (221)
T ss_pred hhHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHhcccc---CCchhHHHHhcchHHHHHHHHHHHHhH----------H
Confidence 346779999999999988877655555554444444433 3443322222 3555555444433322 2
Q ss_pred hHHHHHhhCCCC--------chhHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHHHHHHHH
Q psy1567 351 PLFMREHQNGMY--------RVDVYFLCKTLAEVPIFLAIPVIFTSVMYYMVHLNPIFSRFLTATLIITMVSTVATSFGY 422 (463)
Q Consensus 351 ~~~~rE~~~~~y--------~~~~y~la~~~~~l~~~~~~~~i~~~i~y~~~g~~~~~~~f~~~~l~~~l~~~~~~~lg~ 422 (463)
..|++|+.+|.- ....-+++|+++......+--++..-+.+.+.|++ ...+....+...+.+-....+|.
T Consensus 69 rlF~~d~edGsLE~l~l~p~pl~~~vl~Kv~ahw~~t~lplvl~sPl~~lll~~~--~~~~~~~~ltLllGtp~ls~~ga 146 (221)
T COG2386 69 RLFRDDYEDGSLEQLMLSPLPLAAVVLGKVLAHWLLTGLPLVLASPLLALLLNMD--VGALGALALTLLLGTPALSFLGA 146 (221)
T ss_pred HHHHHhhhcCcHHHHHcCCCcHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhCCC--HhHHHHHHHHHHhcchHHHHHHH
Confidence 356777777764 46778899999998888888888888888888887 45577777777777777777777
Q ss_pred HHHHhcCChhhHHHhhhHH
Q psy1567 423 LISCISSSVSVALSIGPPV 441 (463)
Q Consensus 423 ~i~~~~~~~~~a~~~~~~~ 441 (463)
..+++.-+....-.+.+++
T Consensus 147 ~gaALtv~lrrgglLl~vl 165 (221)
T COG2386 147 VGAALTVGLRRGGLLLSVL 165 (221)
T ss_pred HHHHHHhcCccCCchhhHH
Confidence 7776664444433333333
No 36
>COG1277 NosY ABC-type transport system involved in multi-copper enzyme maturation, permease component [General function prediction only]
Probab=95.88 E-value=1.1 Score=42.27 Aligned_cols=179 Identities=14% Similarity=0.079 Sum_probs=104.0
Q ss_pred HHHHHHHHHhhhhhccChhhHHHHHHHHHHHHHHHHHHhc---CC-----CCChhhhhhhhHHHHHHHHHHHHHHHHHHH
Q psy1567 272 TQFKAVLWRSWLSVRKDPTLMKVRLLQTLMVSIMIGLIYF---GQ-----NLDQDGVMNINGALFICLTNMTFQNVFAVI 343 (463)
Q Consensus 272 ~q~~~l~~R~~~~~~R~~~~~~~~l~~~~~~~~i~g~~f~---~~-----~~~~~~~~~~~~~lf~~~~~~~~~~~~~~i 343 (463)
++...+.+++++...|+|.........-+..++.+...+. .. +.+.... ................+...+.
T Consensus 2 ~~~~~i~~~e~~~~~~s~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~l~~ 80 (278)
T COG1277 2 SNILVIAQKEFQKYLRSKRFYILLAIFLLFAGIVLLLALKYLLILSKLLEGNPFLLL-FLSSVSLVFSFFLPLLAILLGA 80 (278)
T ss_pred chhhHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHhccccccccCcchhhh-hhhhHHHHHHHHHHHHHHHHcc
Confidence 3578899999999999998887777555555555544442 11 1111111 0100010111111111111222
Q ss_pred HHhhhhhh-HHHHHhhCCCCchhHHHHHHHHHHHhHHHHHHHHHH---HHHHHhcCCcc---hHHHHHHHHHHHHHHHHH
Q psy1567 344 SVFCSELP-LFMREHQNGMYRVDVYFLCKTLAEVPIFLAIPVIFT---SVMYYMVHLNP---IFSRFLTATLIITMVSTV 416 (463)
Q Consensus 344 ~~~~~er~-~~~rE~~~~~y~~~~y~la~~~~~l~~~~~~~~i~~---~i~y~~~g~~~---~~~~f~~~~l~~~l~~~~ 416 (463)
..+.+|++ .-.+---+...+++--+.+|.+..+....+..++.. .......|... +......+.....+...+
T Consensus 81 ~~is~E~~~gTi~~Lls~PisR~~Iv~gK~i~~~~~~~~~~~i~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~ 160 (278)
T COG1277 81 DLISSEFESGTIKLLLSKPISRSNIVLGKFLGALLVILIIILISFISLLTLLLLFGFPGNVSSISRLLLFLGSSLLYGLV 160 (278)
T ss_pred chhhccCCcchHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccchHHHHHHHHHHHHHHHHH
Confidence 22322221 112223344568899999999998877666665555 23444455443 334567888888888888
Q ss_pred HHHHHHHHHHhcCChhhHHHhhhHHHHHHHHhhhc
Q psy1567 417 ATSFGYLISCISSSVSVALSIGPPVIIPFLLFGGF 451 (463)
Q Consensus 417 ~~~lg~~i~~~~~~~~~a~~~~~~~~~~~~l~sG~ 451 (463)
..+++.++++..++...+..++..+.+...+..+.
T Consensus 161 ~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~ 195 (278)
T COG1277 161 LLSISLLISSLFSSSSLALLVSIILLLLFIIAFSL 195 (278)
T ss_pred HHHHHHHHhhhcccchHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999888888777666665554443
No 37
>TIGR01291 nodJ ABC-2 type transporter, NodJ family. Nearly all members of this subfamily are NodJ which, together with NodI (TIGR01288), acts to export a variety of modified carbohydrate molecules as signals to plant hosts to establish root nodules. The seed alignment includes a highly divergent member from Azorhizobium caulinodans that is, nonetheless, associated with nodulation. This model is designated as subfamily in part because not all sequences derived from the last common ancestral sequence of Rhizobium sp. and Azorhizobium caulinodans NodJ are necessarily nodulation proteins.
Probab=95.48 E-value=0.73 Score=43.07 Aligned_cols=119 Identities=16% Similarity=0.069 Sum_probs=71.5
Q ss_pred HHHHHHHhhHhhccC-hhHHHHHHHHHHHHHHHHHHHHhCCCCCccccchhh-----hHHHHHHHHHHHHHHHHHH-HHh
Q psy1567 105 FKAVLWRSWLSVRKD-PTLMKVRLLQTLMVSIMIGLIYFGQNLDQDGVMNIN-----GALFICLTNMTFQNVFAVI-SVF 177 (463)
Q Consensus 105 ~~~L~~R~~~~~~Rn-~~~~~~r~~~~~~~ali~g~~f~~~~~~~~~~~~~~-----g~~f~~~~~~~~~~~~~~i-~~f 177 (463)
...+.+|+++..+|+ |......+++.++.-+++|..+-....+..+. +.. |++-+..+..+ ..+.. ..+
T Consensus 7 ~~~~~~R~~~~~~r~~~~~~~~~~~~P~~~l~~fg~~~~~~~~~~~g~-~y~~f~~pg~l~~~~~~~~---~~~~~~~~~ 82 (253)
T TIGR01291 7 WAAVWRRNALAWKKVAAASVLGNLADPLIYLFGLGVGLGKMVGSVDGV-SYAAFLAAGMVATSAMTAS---TFETIYATF 82 (253)
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhhhccccCCC-CHHHHHHHHHHHHHHHHHH---HHHHHHHHH
Confidence 556779999999999 99998889999988899998876542221221 221 22212112111 11111 122
Q ss_pred hh--hhhHHHHhhcCCCcchhHHHHHHHhHHhhHHHHHHHHHHHHHhhcccccc
Q psy1567 178 CS--ELPLFMREHQNGMYRVDVYFLCKTLAEVPIFLAIPVIFTSVMYYMVHLNP 229 (463)
Q Consensus 178 ~~--er~i~~rE~~~g~Y~~~~Y~~a~~~~~~p~~~~~~~v~~~i~Y~~~gl~~ 229 (463)
.+ |+..++|-+..-. +...+.++|.+.+.-..++..++...+.+.+ |..+
T Consensus 83 ~~~r~~g~~~~l~~~Pv-~~~~~~~g~~~~~~~~~~~~~~ii~~~~~~~-g~~~ 134 (253)
T TIGR01291 83 ARMRVTRTWEAMLYTPI-TVGDIVLGEVAWAATKASLAGTIIGVVTATL-GYIE 134 (253)
T ss_pred HHHHHcccHHHHHhCCC-cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hhch
Confidence 22 3334444444444 7789999999999887777777665555443 4433
No 38
>TIGR00025 Mtu_efflux ABC transporter efflux protein, DrrB family. This model represents a branch of a larger superfamily that also includes NodJ, a part of the NodIJ pair of nodulation-triggering signal efflux proteins. The members of this branch may all act in antibiotic resistance.
Probab=94.10 E-value=2 Score=39.43 Aligned_cols=109 Identities=9% Similarity=0.055 Sum_probs=65.7
Q ss_pred ccChhHHHHHHHHHHHHHHHHHHHHhCCCCCccccch-hhhHHHHHHHHHHHHHHHHHHHHhhhhhh--HHHHhhcCCCc
Q psy1567 117 RKDPTLMKVRLLQTLMVSIMIGLIYFGQNLDQDGVMN-INGALFICLTNMTFQNVFAVISVFCSELP--LFMREHQNGMY 193 (463)
Q Consensus 117 ~Rn~~~~~~r~~~~~~~ali~g~~f~~~~~~~~~~~~-~~g~~f~~~~~~~~~~~~~~i~~f~~er~--i~~rE~~~g~Y 193 (463)
+|||.....-+.+.+++-++.+.++-+-. +.+..+. ..+.+-......+.. ..-....+||+ .+.|=+....
T Consensus 2 ~r~p~~~~~~~~~p~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~---~~~~~i~~er~~G~l~rl~~~P~- 76 (232)
T TIGR00025 2 LRVGAQIILTMFIPITFMVGLNLLPGGSV-THNRGATFIPVLMALAAISTAFT---GQAIAVARDRRYGALKRLGATPL- 76 (232)
T ss_pred cccHHHHHHHHHHHHHHHHHHHHhcCCcc-CCcchhHhhHHHHHHHHHHHHHH---HHHHHHHHHHHhCHHHHHhcCCC-
Confidence 69999999999988888777777776521 1222221 223222222222222 11223344443 4555555544
Q ss_pred chhHHHHHHHhHHhhHHHHHHHHHHHHHhhcccccchh
Q psy1567 194 RVDVYFLCKTLAEVPIFLAIPVIFTSVMYYMVHLNPIF 231 (463)
Q Consensus 194 ~~~~Y~~a~~~~~~p~~~~~~~v~~~i~Y~~~gl~~~~ 231 (463)
+...|+++|.+...+..++...+.. ++++..|.+...
T Consensus 77 ~~~~~l~g~~~~~~~~~~~~~~~~~-~~~~~~g~~~~~ 113 (232)
T TIGR00025 77 PRLGILAGRSLAVVARVFLQTLILL-VIGFVLGFRFAG 113 (232)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHhccCcCC
Confidence 7899999999988888776655554 556677888654
No 39
>PRK15066 inner membrane transport permease; Provisional
Probab=93.06 E-value=7 Score=36.49 Aligned_cols=126 Identities=13% Similarity=0.162 Sum_probs=68.3
Q ss_pred HHHHHHHHHHHhhHhhccChhH-HHHHHHHHHHHHHHHHHHHhCCCCCcccc--chhh--hHHHHHHHHHHHHHHHHHHH
Q psy1567 101 WWTQFKAVLWRSWLSVRKDPTL-MKVRLLQTLMVSIMIGLIYFGQNLDQDGV--MNIN--GALFICLTNMTFQNVFAVIS 175 (463)
Q Consensus 101 ~~~q~~~L~~R~~~~~~Rn~~~-~~~r~~~~~~~ali~g~~f~~~~~~~~~~--~~~~--g~~f~~~~~~~~~~~~~~i~ 175 (463)
.++-++.+.+|.++...||+.. ...-+++..+..+++|..+-....+..+. .... |++-+.....+.. .+..
T Consensus 6 ~~~~~~~l~~re~~~~~r~~~~~ll~pli~~~~~~~vfg~~~~~~~~~~~~~~y~~fl~pGll~~~~~~~~~~---~~~~ 82 (257)
T PRK15066 6 YWIALKTIVRKEIRRFLRIWVQTLVPPVITMTLYFLIFGNLIGSRIGEMGGFSYMQFIVPGLIMMSVITNSYS---NVAS 82 (257)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhccccCCCCCCcHHHHHHHHHHHHHHHHHHHH---HHHH
Confidence 4788999999999999999865 33445555566666676653211111111 1111 3322222222222 2222
Q ss_pred Hhhhhhh--HHHHhhcCCCcchhHHHHHHHhHHhhHHHHHHHHHHHHHhhcccccch
Q psy1567 176 VFCSELP--LFMREHQNGMYRVDVYFLCKTLAEVPIFLAIPVIFTSVMYYMVHLNPI 230 (463)
Q Consensus 176 ~f~~er~--i~~rE~~~g~Y~~~~Y~~a~~~~~~p~~~~~~~v~~~i~Y~~~gl~~~ 230 (463)
.+.+||. ..+|=+.... +...+.+++.+...-..++..++...+.+...|.+..
T Consensus 83 ~i~~~~~~~~~~~l~vtp~-~~~~~~~~~il~~~~~~~~~~~iil~i~~~~~~~~~~ 138 (257)
T PRK15066 83 SFFSAKFQRNIEELLVSPV-PNHVIILGYVGGGVARGLCVGILVTLISLFFVPLQVH 138 (257)
T ss_pred HHHHHHHhhhHHHHHcCCC-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHh
Confidence 3333331 1222222333 7778899999988777777766666665555466643
No 40
>PF06182 ABC2_membrane_6: ABC-2 family transporter protein; InterPro: IPR010390 This family consists of a number of hypothetical bacterial proteins of unknown function.
Probab=92.40 E-value=4.5 Score=37.05 Aligned_cols=99 Identities=14% Similarity=0.107 Sum_probs=65.2
Q ss_pred CchhHHHHHHHHHH-HhHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCChhhHHHhhhH
Q psy1567 362 YRVDVYFLCKTLAE-VPIFLAIPVIFTSVMYYMVHLNPIFSRFLTATLIITMVSTVATSFGYLISCISSSVSVALSIGPP 440 (463)
Q Consensus 362 y~~~~y~la~~~~~-l~~~~~~~~i~~~i~y~~~g~~~~~~~f~~~~l~~~l~~~~~~~lg~~i~~~~~~~~~a~~~~~~ 440 (463)
++...+.+.+-+.. ....++.+++..+......+.+.++.+++.+.+.+.+......++...+++++=-......+.
T Consensus 71 v~~~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~i~~~~~~~~~~~~~l~~g~li~~~i~~~~~~laFw~~~~~~~~-- 148 (229)
T PF06182_consen 71 VNYLFYLLFRNLGPSSLGFLIVGIILLIYALIQLGIPWSPLNILLFILSLLLGFLINFSIFFIIGLLAFWFTESWGLS-- 148 (229)
T ss_pred CCHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHH--
Confidence 35666666655554 333444444444444445677778888988888888888888888888887753333333332
Q ss_pred HHHHHHHhhhccccCCCcccccC
Q psy1567 441 VIIPFLLFGGFFLNAGLMGVAIF 463 (463)
Q Consensus 441 ~~~~~~l~sG~~i~~~~lP~~l~ 463 (463)
.+...+++|...|.+-.|+|++
T Consensus 149 -~i~~~l~sg~~~Pl~~fp~~~~ 170 (229)
T PF06182_consen 149 -YIFYSLLSGAIYPLSIFPGWIQ 170 (229)
T ss_pred -HHHHHHHHHHHccHHHhHHHHH
Confidence 3445559999999999998864
No 41
>COG1668 NatB ABC-type Na+ efflux pump, permease component [Energy production and conversion / Inorganic ion transport and metabolism]
Probab=91.95 E-value=7 Score=39.34 Aligned_cols=94 Identities=11% Similarity=0.111 Sum_probs=63.1
Q ss_pred hhhhHHHHHhhCCCCchhHHHHHHHHHHHhHHHHHHHHHHHHHH---------HhcC--CcchHHHHHHHHHHHHHHHHH
Q psy1567 348 SELPLFMREHQNGMYRVDVYFLCKTLAEVPIFLAIPVIFTSVMY---------YMVH--LNPIFSRFLTATLIITMVSTV 416 (463)
Q Consensus 348 ~er~~~~rE~~~~~y~~~~y~la~~~~~l~~~~~~~~i~~~i~y---------~~~g--~~~~~~~f~~~~l~~~l~~~~ 416 (463)
+||.++.-=-.++. ++..+..||++.-....+.+..++.+..+ ...+ ++..+..+..+.+.+.+....
T Consensus 214 Ke~rtlE~LLssPv-Sr~~ii~gKil~~~~v~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~l 292 (407)
T COG1668 214 KERRTLEVLLSSPV-SRSEIVFGKILGAALVGLTQIALWLLALTIATFLSLAVALAGTGLALLPAYLLLFALSLFLLGLL 292 (407)
T ss_pred hhhchhhhhhccCc-ChhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhHHhhhHHHHHHHHHHHHHHHH
Confidence 34444443334444 89999999999999999999777777662 1111 223344455666666665555
Q ss_pred H-HHHHHHHHHhcCChhhHHHhhhHHH
Q psy1567 417 A-TSFGYLISCISSSVSVALSIGPPVI 442 (463)
Q Consensus 417 ~-~~lg~~i~~~~~~~~~a~~~~~~~~ 442 (463)
+ .+++.++++.+++.+-|+....++.
T Consensus 293 ~~~~l~a~l~~~a~~~k~aq~~~~p~~ 319 (407)
T COG1668 293 LYAALAAFLGAMAGSIKEAQTLISPLT 319 (407)
T ss_pred HHHHHHHHHHHHhcCHHHHHHHhhHHH
Confidence 4 4489999999999888888877333
No 42
>PF03379 CcmB: CcmB protein; InterPro: IPR003544 Within mitochondria and bacteria, a family of related proteins is involved in the assembly of periplasmic c-type cytochromes: these include CycK [], CcmF [,], NrfE [] and CcbS []. These proteins may play a role in guidance of apocytochromes and haem groups for their covalent linkage by the cytochrome-c-haem lyase. Members of the family are probably integral membrane proteins, with up to 16 predicted transmembrane (TM) helices. The gene products of the hel and ccl loci have been shown to be required specifically for the biogenesis of c-type cytochromes in the Gram-negative photosynthetic bacterium Rhodobacter capsulatus []. Genetic and molecular analyses show that the hel locus contains at least 4 genes, helA, helB, helC and orf52. HelA is similar to the ABC transporters and helA, helB, and helC are proposed to encode an export complex []. It is believed that the hel-encoded proteins are required for the export of haem to the periplasm, where it is subsequently ligated to the c-type apocytochromes []. However, while CcmB and CcmC have the potential to interact with CcmA, the 3 gene products probably associating to form a complex with (CcmA)2-CcmB-CcmC stoichiometry, the substrate for the putative CcmABC-transporter is probably neither haem nor c-type apocytochromes []. Hydropathy analysis suggests the presence of 6 TM domains.; GO: 0015232 heme transporter activity, 0015886 heme transport, 0017004 cytochrome complex assembly, 0016020 membrane
Probab=91.94 E-value=9.5 Score=34.64 Aligned_cols=123 Identities=20% Similarity=0.227 Sum_probs=71.4
Q ss_pred HHHHHHHhhHhhccChhHHHHHHHHHHHHHHHHHHHHhCCCCCccccch-hhhHHHHHHHHHHHHHHHHHHHHhhhhhhH
Q psy1567 105 FKAVLWRSWLSVRKDPTLMKVRLLQTLMVSIMIGLIYFGQNLDQDGVMN-INGALFICLTNMTFQNVFAVISVFCSELPL 183 (463)
Q Consensus 105 ~~~L~~R~~~~~~Rn~~~~~~r~~~~~~~ali~g~~f~~~~~~~~~~~~-~~g~~f~~~~~~~~~~~~~~i~~f~~er~i 183 (463)
++.+.||.++.-+|++.....-+......-.+.. +-++.+++...+ ..|++..+..+.+..+ .+| .
T Consensus 1 ~~~l~~kdl~le~r~~~~~~~~~lf~l~~i~if~---~al~~~~~~l~~~~~gllWi~~lfa~~l~---------~~r-~ 67 (215)
T PF03379_consen 1 FLALFRKDLRLEFRSKEGLLSMLLFFLLVIVIFS---FALGPDPDLLARVAPGLLWIALLFASLLG---------LNR-S 67 (215)
T ss_pred CHHHHHHHHHHHHccccchHHHHHHHHHHHHHHH---hhcCCchhHHHHHhHHHHHHHHHHHHHHH---------hhH-h
Confidence 4689999999999999877555554444444443 345544433232 2333322222222221 122 2
Q ss_pred HHHhhcCCC--------cchhHHHHHHHhHHhhHHHHHHHHHHHHHhhcccccchhhhHHHHHHHHH
Q psy1567 184 FMREHQNGM--------YRVDVYFLCKTLAEVPIFLAIPVIFTSVMYYMVHLNPIFSRFLTATLIIT 242 (463)
Q Consensus 184 ~~rE~~~g~--------Y~~~~Y~~a~~~~~~p~~~~~~~v~~~i~Y~~~gl~~~~~~f~~f~l~l~ 242 (463)
|.+|+++|. .+....+++|.+...-...+..++...+...+-|.+.+ ....+.+.+.
T Consensus 68 f~~E~e~G~L~~l~l~~~~~~~i~l~K~l~~~~~~~~~~~i~~pl~~~l~~~~~~--~~~~~~~~l~ 132 (215)
T PF03379_consen 68 FAREYEDGTLEQLLLSPVPRSAIFLGKLLANWLLLFLPELIIFPLFALLFNLPIS--SWPLLLLSLL 132 (215)
T ss_pred HHHHHhCCcHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCChh--HHHHHHHHHH
Confidence 666666655 13567899999999877777777766666666677653 3444444433
No 43
>TIGR01257 rim_protein retinal-specific rim ABC transporter. This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease.
Probab=91.72 E-value=5.1 Score=48.58 Aligned_cols=105 Identities=17% Similarity=0.136 Sum_probs=75.5
Q ss_pred HHHHHhhhhhhHHHHHh--hCCCCchhHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHHHH
Q psy1567 341 AVISVFCSELPLFMREH--QNGMYRVDVYFLCKTLAEVPIFLAIPVIFTSVMYYMVHLNPIFSRFLTATLIITMVSTVAT 418 (463)
Q Consensus 341 ~~i~~~~~er~~~~rE~--~~~~y~~~~y~la~~~~~l~~~~~~~~i~~~i~y~~~g~~~~~~~f~~~~l~~~l~~~~~~ 418 (463)
..+..+..||+.=.||. -.|+ +.+.|++++.+..+...++.+++.+++... +--.....++..++.+++..+...
T Consensus 669 ~lv~~iV~EKE~rlKE~MkiMGL-~~~~~w~sWfi~~~~~~~i~~~l~~~il~~--~~~~~~s~~~~lfl~~~~y~~s~I 745 (2272)
T TIGR01257 669 MTVKSIVLEKELRLKETLKNQGV-SNAVIWCTWFLDSFSIMSMSIFLLTIFIMH--GRILHYSDPFILFLFLLAFSTATI 745 (2272)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCC-chHHHHHHHHHHHHHHHHHHHHHHHHHHhh--CceeecCChHHHHHHHHHHHHHHH
Confidence 45566777887777774 4566 789999999999887777766555554322 211122345666677777788889
Q ss_pred HHHHHHHHhcCChhhHHHhhhHHHHHHHHh
Q psy1567 419 SFGYLISCISSSVSVALSIGPPVIIPFLLF 448 (463)
Q Consensus 419 ~lg~~i~~~~~~~~~a~~~~~~~~~~~~l~ 448 (463)
.++.++++++.+...|..+++++.+.+.+.
T Consensus 746 ~~~fliS~fFska~~A~~~~~li~f~~~lp 775 (2272)
T TIGR01257 746 MQCFLLSTFFSKASLAAACSGVIYFTLYLP 775 (2272)
T ss_pred HHHHHHHHHhCchHHHHHHHHHHHHHHHHH
Confidence 999999999999999999998888776543
No 44
>TIGR01257 rim_protein retinal-specific rim ABC transporter. This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease.
Probab=90.32 E-value=4.7 Score=48.90 Aligned_cols=96 Identities=9% Similarity=0.040 Sum_probs=70.4
Q ss_pred HHhhhhhhHHHH--HhhCCCCchhHHHHHHHHHHHhHHHHHHHHHHHHHHHhc--CCcchHHHHHHHHHHHHHHHHHHHH
Q psy1567 344 SVFCSELPLFMR--EHQNGMYRVDVYFLCKTLAEVPIFLAIPVIFTSVMYYMV--HLNPIFSRFLTATLIITMVSTVATS 419 (463)
Q Consensus 344 ~~~~~er~~~~r--E~~~~~y~~~~y~la~~~~~l~~~~~~~~i~~~i~y~~~--g~~~~~~~f~~~~l~~~l~~~~~~~ 419 (463)
.....||..=.| ..-+|. ++.+|.++..+.|+..-++..+++.++.+..- ++. +...+...++++++.+++...
T Consensus 1699 ~~~V~ER~skaK~lQ~vSGv-~~~~YWls~fl~D~~~y~i~~~~~i~i~~~f~~~~~~-~~~~l~~~~lll~lyG~a~ip 1776 (2272)
T TIGR01257 1699 LYLIQERVNKAKHLQFISGV-SPTTYWLTNFLWDIMNYAVSAGLVVGIFIGFQKKAYT-SPENLPALVALLMLYGWAVIP 1776 (2272)
T ss_pred eeeehHHhhhHHHHHHHhCC-CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhChhhhc-CcchHHHHHHHHHHHHHHHHH
Confidence 334566665433 456777 99999999999999888887777776665432 122 334566677788888999999
Q ss_pred HHHHHHHhcCChhhHHHhhhHH
Q psy1567 420 FGYLISCISSSVSVALSIGPPV 441 (463)
Q Consensus 420 lg~~i~~~~~~~~~a~~~~~~~ 441 (463)
+..+++.++++...|....+++
T Consensus 1777 ~tYl~SflF~~~~~A~~~~~~i 1798 (2272)
T TIGR01257 1777 MMYPASFLFDVPSTAYVALSCA 1798 (2272)
T ss_pred HHHHHHHhhCCchhHHHHHHHH
Confidence 9999999999988887654433
No 45
>TIGR03518 ABC_perm_GldF gliding motility-associated ABC transporter permease protein GldF. Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldF is believed to be a ABC transporter permease protein (along with ATP-binding subunit, GldA and a sunstrate-binding subunit, GldG) and is linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockouts of GldF abolish the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility.
Probab=88.69 E-value=20 Score=33.15 Aligned_cols=102 Identities=15% Similarity=0.101 Sum_probs=52.5
Q ss_pred HHHHHHhhHhhccChhHHHHHHHHHHHHHHHHHHHHhCC----CCCccccchhhhHHHHHHHHHHHHHHHHHHHHhhhhh
Q psy1567 106 KAVLWRSWLSVRKDPTLMKVRLLQTLMVSIMIGLIYFGQ----NLDQDGVMNINGALFICLTNMTFQNVFAVISVFCSEL 181 (463)
Q Consensus 106 ~~L~~R~~~~~~Rn~~~~~~r~~~~~~~ali~g~~f~~~----~~~~~~~~~~~g~~f~~~~~~~~~~~~~~i~~f~~er 181 (463)
+.+.||.++...|+|..+..-.+...+.|+.. ..+.+. ..+.++.+.-.+. ......+....-++..+.+||
T Consensus 2 ~~i~~kEl~~~f~sp~~yv~~~~~~~~~g~~~-~~~~~~~~~~~~~~~~~~~~f~~---~~~~~~~~~p~l~~~~ia~Er 77 (240)
T TIGR03518 2 KAIFKKEFNSFFSSPIGYLVIAVFLLANGLFL-WVFPGDFNILDYGYADLTPFFSL---APWVFLFLIPAITMRSFAEER 77 (240)
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHH-HHHhhhhhHHhcCcchHHHHHHH---HHHHHHHHHHHHHHHHHHHHH
Confidence 56899999999999999977777666666442 222111 1122222222221 111111111112334444444
Q ss_pred hHHHHh--hcCCCcchhHHHHHHHhHHhhHHHH
Q psy1567 182 PLFMRE--HQNGMYRVDVYFLCKTLAEVPIFLA 212 (463)
Q Consensus 182 ~i~~rE--~~~g~Y~~~~Y~~a~~~~~~p~~~~ 212 (463)
+-=.-| ..... +...+.++|.++-.....+
T Consensus 78 ~~GTle~Llt~Pv-s~~~ivlgK~l~~~~~~~~ 109 (240)
T TIGR03518 78 KLGTLELLLTRPI-SDWQIILGKYLGSLTLVIL 109 (240)
T ss_pred HcCHHHHHHhCCC-ChHHHHHHHHHHHHHHHHH
Confidence 322222 22222 5578899999988655443
No 46
>TIGR03062 pip_yhgE_Cterm YhgE/Pip C-terminal domain. This family contains the C-terminal domain of a family of multiple membrane-spanning proteins of Gram-positive bacteria. One member was shown to be a host protein essential for phage infection, so many members of this family are called "phage infection protein". A separate model, TIGR03061, represents the conserved N-terminal domain. The domains are separated by regions highly variable in both length and sequence, often containing extended heptad repeats as described in model TIGR03057.
Probab=85.73 E-value=5.9 Score=35.52 Aligned_cols=50 Identities=18% Similarity=0.074 Sum_probs=40.3
Q ss_pred chhHHHHHHHhHHhhHHHHHHHHHHHHHhhcccccchhhhHHHHHHHHHHHH
Q psy1567 194 RVDVYFLCKTLAEVPIFLAIPVIFTSVMYYMVHLNPIFSRFLTATLIITMAK 245 (463)
Q Consensus 194 ~~~~Y~~a~~~~~~p~~~~~~~v~~~i~Y~~~gl~~~~~~f~~f~l~l~l~~ 245 (463)
+.+.++++|.+...+..++++++...+.|++.|++++ ++..+++++++..
T Consensus 58 ~~~~~~~~k~~~~~~~~~~~~~~~~~i~~~~~g~~~~--~~~~~~l~~~l~~ 107 (208)
T TIGR03062 58 RSWRIALAKLLPGGLIGVLQAIILYGVLILGLGLDPA--HPPATFGFAILTS 107 (208)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccC--CHHHHHHHHHHHH
Confidence 5567899999999999999999999999999999874 4555555554443
No 47
>PF12051 DUF3533: Protein of unknown function (DUF3533); InterPro: IPR022703 This transmembrane domain is functionally uncharacterised. It is found in bacterial and eukaryotic proteins.
Probab=85.39 E-value=16 Score=36.51 Aligned_cols=97 Identities=7% Similarity=0.034 Sum_probs=63.6
Q ss_pred chhHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCcc--hH--HHHHHHHHHHHHHHHHHHHHHHHHHHhcCChhhHHHhh
Q psy1567 363 RVDVYFLCKTLAEVPIFLAIPVIFTSVMYYMVHLNP--IF--SRFLTATLIITMVSTVATSFGYLISCISSSVSVALSIG 438 (463)
Q Consensus 363 ~~~~y~la~~~~~l~~~~~~~~i~~~i~y~~~g~~~--~~--~~f~~~~l~~~l~~~~~~~lg~~i~~~~~~~~~a~~~~ 438 (463)
++..+++-|.+......++.++.++.+. +..+.+. .. +.|+.+|...++...+.....-.+.++.+. .-..+.
T Consensus 240 ~~~~~~~~R~~~~~~~~~~~Sl~~~~v~-~af~~~~~~~~g~~gf~v~Wm~~~l~m~a~g~~~e~~~~~i~~--~~~~~~ 316 (382)
T PF12051_consen 240 KPRHYLIYRWIISWIAYFFLSLFYSLVS-LAFQVDFTVAFGKGGFVVYWMFSWLYMSAVGLANENVISIIGP--PFMPFW 316 (382)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHCCCccccCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHcc--chHHHH
Confidence 8889999999999999999999999998 5556554 22 458888888777655544433333344322 223344
Q ss_pred hHHHHHHHHhhhccccCCCcccccC
Q psy1567 439 PPVIIPFLLFGGFFLNAGLMGVAIF 463 (463)
Q Consensus 439 ~~~~~~~~l~sG~~i~~~~lP~~l~ 463 (463)
.+..+...+-+ -+.|.+-.|+..|
T Consensus 317 ll~wvi~nv~~-~~~P~el~p~fyr 340 (382)
T PF12051_consen 317 LLFWVILNVSS-TFYPLELSPGFYR 340 (382)
T ss_pred HHHHHHHhccc-ccCChhhCccHHH
Confidence 44444444455 5568888887654
No 48
>COG3559 TnrB3 Putative exporter of polyketide antibiotics [Cell envelope biogenesis, outer membrane]
Probab=82.23 E-value=57 Score=32.61 Aligned_cols=171 Identities=9% Similarity=-0.007 Sum_probs=84.6
Q ss_pred ChhhHHHHHHHHHHHHHHHHHHhcCCCC----Ch--hhhhh-----------hhHHHHHHHHH-HHHHHHHHHHHHhhhh
Q psy1567 288 DPTLMKVRLLQTLMVSIMIGLIYFGQNL----DQ--DGVMN-----------INGALFICLTN-MTFQNVFAVISVFCSE 349 (463)
Q Consensus 288 ~~~~~~~~l~~~~~~~~i~g~~f~~~~~----~~--~~~~~-----------~~~~lf~~~~~-~~~~~~~~~i~~~~~e 349 (463)
++..++.-.+...+.+++.|.+|.+.++ |. .++.. -...+|.++.+ ........++....+|
T Consensus 296 ~Rg~lI~W~v~~fllglvygs~fg~l~~fL~~n~avrqave~~e~ag~le~~Flv~lfsIisil~a~~~V~~vlkl~geE 375 (536)
T COG3559 296 NRGSLILWTVGLFLLGLVYGSVFGGLGDFLGDNTAVRQAVERMEGAGALEQAFLVLLFSIISILAAAFAVSLVLKLHGEE 375 (536)
T ss_pred ccCccHHHHHHHHHHHHHHHHHhhhhhhhhcCcHHHHHHHHcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHh
Confidence 4455555566667788999999987632 21 11111 11222222211 1222223444455677
Q ss_pred hhHHHHHhhCCCCchhHHHHHHHHHHHhHHHHHHHHHHHH---HHHhcCCc--chHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy1567 350 LPLFMREHQNGMYRVDVYFLCKTLAEVPIFLAIPVIFTSV---MYYMVHLN--PIFSRFLTATLIITMVSTVATSFGYLI 424 (463)
Q Consensus 350 r~~~~rE~~~~~y~~~~y~la~~~~~l~~~~~~~~i~~~i---~y~~~g~~--~~~~~f~~~~l~~~l~~~~~~~lg~~i 424 (463)
|+.-.....++-.+.+..+.+.....+....+..++.... .|.|.+-+ .+......--++.....+...++...+
T Consensus 376 r~nr~eal~a~~vsR~~vl~syl~~all~~~l~tllAl~ga~L~~~~~~~~v~~s~~~~v~sgl~~lvav~f~l~ia~ll 455 (536)
T COG3559 376 RGNRAEALLAGAVSRTHVLASYLAMALLGSALATLLALVGAGLAYGMTVGDVGGSLPTVVGSGLVQLVAVWFLLAIAVLL 455 (536)
T ss_pred hcchHHHHHhcchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCcccCccHHHHHHHhHHHHHHHHHHHHHHHHH
Confidence 7766665556666766666665555554444444433333 33322221 122223333334444445555566666
Q ss_pred HHhcCChhhHHHhhhHHHHHHHHhhhccccCCCccccc
Q psy1567 425 SCISSSVSVALSIGPPVIIPFLLFGGFFLNAGLMGVAI 462 (463)
Q Consensus 425 ~~~~~~~~~a~~~~~~~~~~~~l~sG~~i~~~~lP~~l 462 (463)
.-+.|...--.-+.-+.......++|. -++|+|+
T Consensus 456 ~GLaPr~t~laWlyl~~~~fvtyLg~L----lslpewl 489 (536)
T COG3559 456 FGLAPRFTPLAWLYLIVGFFVTYLGGL----LSLPEWL 489 (536)
T ss_pred hccchhhhhhHHHHHHHHHHHHHHHHh----cccHHHH
Confidence 666676544444444455555556663 3667664
No 49
>TIGR03733 lanti_perm_MutG lantibiotic protection ABC transporter permease subunit, MutG family. Model TIGR03731 represents the family of all lantibiotics related to gallidermin, including epidermin, mutatin, and nisin. This protein family is largely restricted to gallidermin-family lantibiotic cassettes, but also include orphan transporter cassettes in species that lack candidate lantibiotic precursor and synthetase genes. In most species, this subunit is paralogous to an adjacent gene modeled separate by TIGR03732, while in some species only one subunit is found.
Probab=81.45 E-value=45 Score=30.88 Aligned_cols=38 Identities=11% Similarity=-0.086 Sum_probs=24.0
Q ss_pred hhhhHHHHhhcCCCcchhHHHHHHHhHHhhHHHHHHHH
Q psy1567 179 SELPLFMREHQNGMYRVDVYFLCKTLAEVPIFLAIPVI 216 (463)
Q Consensus 179 ~er~i~~rE~~~g~Y~~~~Y~~a~~~~~~p~~~~~~~v 216 (463)
||+.--.|.-.+.-.+...+++||.+.-.-..++..++
T Consensus 71 E~~~~~~k~ll~~p~s~~~~~~aK~l~~~~~~~is~~l 108 (248)
T TIGR03733 71 EESAGNFKNLLSTTKSKYKAYLSKLLLLLLCGFFSTFL 108 (248)
T ss_pred HHHhChHHHHhhcCCchhHHHHHHHHHHHHHHHHHHHH
Confidence 33333444444444566789999999877776665554
No 50
>PF09847 DUF2074: Predicted permease (DUF2074); InterPro: IPR018646 This family has no known function.
Probab=77.51 E-value=88 Score=31.95 Aligned_cols=122 Identities=12% Similarity=0.062 Sum_probs=73.3
Q ss_pred CCCCCHHHHHHHHHHHhhhhhccChhhHHHHHHHHHHHHHHHHHHhcCCCCChhhhhhhhHHHHHHHHHHHHHHHHHHHH
Q psy1567 265 PYKANWWTQFKAVLWRSWLSVRKDPTLMKVRLLQTLMVSIMIGLIYFGQNLDQDGVMNINGALFICLTNMTFQNVFAVIS 344 (463)
Q Consensus 265 ~~~~s~~~q~~~l~~R~~~~~~R~~~~~~~~l~~~~~~~~i~g~~f~~~~~~~~~~~~~~~~lf~~~~~~~~~~~~~~i~ 344 (463)
+++.+...-...+.++.+|...|+++... -++.|+.+.+..-....+.++ . .. ...+........+ ...+..
T Consensus 241 ~~~~k~~~~~~al~~KDlK~~~R~sq~l~-~~L~Pl~~~i~~i~~~~~~~~--~-~~---~~~~~i~~~~~~s-s~~~~~ 312 (449)
T PF09847_consen 241 KFKIKIRSPLLALFKKDLKILFRKSQLLF-GFLYPLVFVIPFIFMILSSGD--P-LS---LTIFYIIIIGVYS-SMMSDA 312 (449)
T ss_pred eeccccCcchHHHHHHHHHHHHcchhHHH-HHHHHHHHHHHHHHHHhhcCc--h-hH---HHHHHHHHHHHHH-HHHHHH
Confidence 55666777788899999999999987755 778888766664333222121 1 11 2222233322332 324445
Q ss_pred HhhhhhhHHHHHhhCCCCchhHHHHHHHHHHHhHHHHHHHHHHHHHHHhcC
Q psy1567 345 VFCSELPLFMREHQNGMYRVDVYFLCKTLAEVPIFLAIPVIFTSVMYYMVH 395 (463)
Q Consensus 345 ~~~~er~~~~rE~~~~~y~~~~y~la~~~~~l~~~~~~~~i~~~i~y~~~g 395 (463)
....|++.+.==+.-+. +...+..+|.+.-........++.+++.....|
T Consensus 313 ~l~~E~~~~~~l~sLPi-~~~~~v~sKil~~~~i~~~l~~~i~i~~~~~~~ 362 (449)
T PF09847_consen 313 LLKIEGEGFEFLRSLPI-KKREFVRSKILIPSIIPSALSLIIVIVSSIYNG 362 (449)
T ss_pred HHHHhhhcchhHhhCCC-ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 55566666544344444 788999999999876666555555555555555
No 51
>PF12679 ABC2_membrane_2: ABC-2 family transporter protein
Probab=73.42 E-value=65 Score=29.95 Aligned_cols=26 Identities=8% Similarity=0.169 Sum_probs=19.9
Q ss_pred HHHHHhhHhhccChhHHHHHHHHHHH
Q psy1567 107 AVLWRSWLSVRKDPTLMKVRLLQTLM 132 (463)
Q Consensus 107 ~L~~R~~~~~~Rn~~~~~~r~~~~~~ 132 (463)
.+.|+.++..+|++.....-.+..++
T Consensus 2 ~i~~~E~~~~~r~~~~~~~~~~~~~~ 27 (277)
T PF12679_consen 2 AIAKKEFRELFRSRRFWILLIIFLLL 27 (277)
T ss_pred hhHHHHHHHHHHCHHHHHHHHHHHHH
Confidence 57899999999999887665554444
No 52
>COG4325 Predicted membrane protein [Function unknown]
Probab=72.12 E-value=79 Score=31.07 Aligned_cols=160 Identities=18% Similarity=0.183 Sum_probs=81.9
Q ss_pred CCCCHHHHHHHHHHHhhhhhccChhhHHHHHHHHHHHHHHH------------HHHhcCCCCChhhhhhhhHHHHHHHHH
Q psy1567 266 YKANWWTQFKAVLWRSWLSVRKDPTLMKVRLLQTLMVSIMI------------GLIYFGQNLDQDGVMNINGALFICLTN 333 (463)
Q Consensus 266 ~~~s~~~q~~~l~~R~~~~~~R~~~~~~~~l~~~~~~~~i~------------g~~f~~~~~~~~~~~~~~~~lf~~~~~ 333 (463)
..++...|.+.+..+-...+|--|... .+..+++++.+ -.+|.+.+.+..++......-...++.
T Consensus 19 ~~~~mlv~~~~~ld~l~~~~WvipA~~---vv~al~fgf~L~~~~Rtl~va~~~~~~q~t~~dar~vL~vvAaSmisVtg 95 (464)
T COG4325 19 TATSMLVRRKAILDYLQGAVWVIPAFG---VVIALGFGFVLSMIPRTLGVAIDKLMFQGTPGDARGVLIVVAASMISVTG 95 (464)
T ss_pred eeecccchHHHHHHhhccceeeehHHH---HHHHHHHHHhhccccccchhhhhHHHHhcCchhHHHHHHHHHHHHHHHHH
Confidence 445566677777777666666555443 22222222222 122333333333444444444444444
Q ss_pred HHHHHHHHHHHHh-----hhhhhHHHHHhhCCCCchhHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCcchH-HHHHHHH
Q psy1567 334 MTFQNVFAVISVF-----CSELPLFMREHQNGMYRVDVYFLCKTLAEVPIFLAIPVIFTSVMYYMVHLNPIF-SRFLTAT 407 (463)
Q Consensus 334 ~~~~~~~~~i~~~-----~~er~~~~rE~~~~~y~~~~y~la~~~~~l~~~~~~~~i~~~i~y~~~g~~~~~-~~f~~~~ 407 (463)
..|+.+..+...- ++--..|+|++-+.. ..-.++.+++|++++.--+|-..+. ++|..+.
T Consensus 96 ~~fSItvvalqlaSsqfsPRll~~fmrd~~nqv--------------vLa~FlctFvysl~vlrtvg~e~d~~g~FIp~~ 161 (464)
T COG4325 96 IVFSITVVALQLASSQFSPRLLRTFLRDVPNQV--------------VLAIFLCTFVYSLGVLRTVGEERDGQGAFIPKV 161 (464)
T ss_pred HHHHHHHHHHHHHhccCCHHHHHHHhhcCchHH--------------HHHHHHHHHHHHHHHHHHhhhccCccccceehH
Confidence 4444332222111 222234444443322 2236677788888877777755544 7788777
Q ss_pred HHHHHHHHHHHHHHHHHHHh---cCChhhHHHhhhHHH
Q psy1567 408 LIITMVSTVATSFGYLISCI---SSSVSVALSIGPPVI 442 (463)
Q Consensus 408 l~~~l~~~~~~~lg~~i~~~---~~~~~~a~~~~~~~~ 442 (463)
.+.....+...++|.++..+ ..+.+.++++--+-.
T Consensus 162 avtv~lLlaiisig~~iyfl~~l~~siq~~n~i~kv~~ 199 (464)
T COG4325 162 AVTVSLLLAIISIGALIYFLHHLMHSIQIDNIIDKVRL 199 (464)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 77777777777777766554 334455555544433
No 53
>KOG0059|consensus
Probab=71.94 E-value=60 Score=36.39 Aligned_cols=97 Identities=18% Similarity=0.124 Sum_probs=69.8
Q ss_pred hhhhhHHHH--HhhCCCCchhHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy1567 347 CSELPLFMR--EHQNGMYRVDVYFLCKTLAEVPIFLAIPVIFTSVMYYMVHLNPIFSRFLTATLIITMVSTVATSFGYLI 424 (463)
Q Consensus 347 ~~er~~~~r--E~~~~~y~~~~y~la~~~~~l~~~~~~~~i~~~i~y~~~g~~~~~~~f~~~~l~~~l~~~~~~~lg~~i 424 (463)
..||..-.| +.-+|+ ++.+|.++..+.++...++..++...+++.+- ......+....+...+.......+..+.
T Consensus 320 i~e~~~~~~~~~~i~G~-~~~~yw~~~~~~d~~~~~l~~~~~~~~~~~f~--~~~~~~~~~~~~~~~l~~~s~i~l~y~~ 396 (885)
T KOG0059|consen 320 ILERQQRLRHQQLIAGL-SPSTYWLFALVWDLLLYLLILLILLIFVLIFG--FFAGNNTVIILLLLLLYIRSAIPLTYIL 396 (885)
T ss_pred HHHHHHHHHHHHHHhCC-chHHHHHHHHHHHHHHHHHHHHHHHHHhheee--cccccchHHHHHHHHHHHHHHHHHHHHH
Confidence 344444333 356666 99999999999999988888877777766543 2244556666777777778888999999
Q ss_pred HHhcCChhhHHHhhhHHHHHHH
Q psy1567 425 SCISSSVSVALSIGPPVIIPFL 446 (463)
Q Consensus 425 ~~~~~~~~~a~~~~~~~~~~~~ 446 (463)
+.+++....+.....++.....
T Consensus 397 s~~f~~~~~~~v~~~i~~~~s~ 418 (885)
T KOG0059|consen 397 SFIFSKESTASVILSIYNLISG 418 (885)
T ss_pred HHHhcCCcCceeehhhHHHHHH
Confidence 9999988888777665555443
No 54
>COG4200 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=69.69 E-value=89 Score=28.47 Aligned_cols=88 Identities=16% Similarity=0.145 Sum_probs=54.8
Q ss_pred HHHhhCCC--------CchhHHHHHHHHHHHhHHHHHHHHHHHHHH---HhcCCcchHH--HHHHHHHHHHHHHHHHHHH
Q psy1567 354 MREHQNGM--------YRVDVYFLCKTLAEVPIFLAIPVIFTSVMY---YMVHLNPIFS--RFLTATLIITMVSTVATSF 420 (463)
Q Consensus 354 ~rE~~~~~--------y~~~~y~la~~~~~l~~~~~~~~i~~~i~y---~~~g~~~~~~--~f~~~~l~~~l~~~~~~~l 420 (463)
.-|+++|. ++.+-.+++|+..-+....+.+++..+.++ ...|...+.. .++.-...-++.++-..++
T Consensus 76 ~~Ehk~n~W~~ll~lPv~r~~~YlsK~~~vf~L~~l~~li~~~~i~~~gv~~g~~~s~~~~~~~~~~~~gll~alpl~~l 155 (239)
T COG4200 76 SVEHKSNMWKHLLLLPVARWKVYLSKVFWVFILVALTSLILFISIWTVGVLYGGVKSFELAAAFTLLILGLLLALPLVAL 155 (239)
T ss_pred HHHhcCCCchhhheeehHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhhhhHHHHHHHHHHHHHHHHHHHH
Confidence 44555554 578889999999988776666554444433 3344443332 2333333334444555666
Q ss_pred HHHHHHhcCChhhHHHhhhHH
Q psy1567 421 GYLISCISSSVSVALSIGPPV 441 (463)
Q Consensus 421 g~~i~~~~~~~~~a~~~~~~~ 441 (463)
=..++...+|...|..++...
T Consensus 156 Q~wLsm~fknf~~al~igI~l 176 (239)
T COG4200 156 QFWLSMRFKNFAVALVIGIFL 176 (239)
T ss_pred HHHHHHHHHhhhHhHHHHHhH
Confidence 677888888988888877766
No 55
>TIGR03061 pip_yhgE_Nterm YhgE/Pip N-terminal domain. This family contains the N-terminal domain of a family of multiple membrane-spanning proteins of Gram-positive bacteria. One member was shown to be a host protein essential for phage infection, so many members of this family are called "phage infection protein". A separate model, TIGR03062, represents the conserved C-terminal domain. The domains are separated by regions highly variable in both length and sequence, often containing extended heptad repeats as described in model TIGR03057.
Probab=60.07 E-value=11 Score=32.36 Aligned_cols=33 Identities=15% Similarity=0.231 Sum_probs=25.8
Q ss_pred HhhhhhccChhh---HHHHHHHHHHHHHHHHHHhcC
Q psy1567 280 RSWLSVRKDPTL---MKVRLLQTLMVSIMIGLIYFG 312 (463)
Q Consensus 280 R~~~~~~R~~~~---~~~~l~~~~~~~~i~g~~f~~ 312 (463)
|+++..+|||.. ++.-++.|+++++++|..|++
T Consensus 1 ~E~~~~~r~~~~~~~li~~~~~P~i~~~~~~~a~~~ 36 (164)
T TIGR03061 1 SELKRLRKNKLLRIALIAIMLIPLLYGGLFLWAFWD 36 (164)
T ss_pred ChHHHhhcCcHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 678899999964 444577788899999988863
No 56
>TIGR03732 lanti_perm_MutE lantibiotic protection ABC transporter permease subunit, MutE/EpiE family. Model TIGR03731 represents the family of all lantibiotics related to gallidermin, including epidermin, mutatin, and nisin. This protein family is largely restricted to gallidermin-family lantibiotic cassettes, but also include orphan transporter cassettes in species that lack candidate lantibiotic precursor and synthetase genes. In most species, this subunit is paralogous to an adjacent gene, modeled separately.
Probab=58.72 E-value=1.5e+02 Score=27.29 Aligned_cols=72 Identities=13% Similarity=0.080 Sum_probs=44.7
Q ss_pred hhCCCCchhHHHHHHHHHHHhHHHHHHHHHHHHHH---HhcCCc-chHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q psy1567 357 HQNGMYRVDVYFLCKTLAEVPIFLAIPVIFTSVMY---YMVHLN-PIFSRFLTATLIITMVSTVATSFGYLISCIS 428 (463)
Q Consensus 357 ~~~~~y~~~~y~la~~~~~l~~~~~~~~i~~~i~y---~~~g~~-~~~~~f~~~~l~~~l~~~~~~~lg~~i~~~~ 428 (463)
..+...+....++||++.-....++..++..+..+ ...|.. .+...++...+..+++++....+...++...
T Consensus 75 lls~pvs~~~~~~aK~l~~~~~~~~s~~i~~i~~~~~g~l~~~~~~~~~~~~~~~l~~~i~sl~~i~l~l~ls~~~ 150 (241)
T TIGR03732 75 ILSLPVDLKKVWIAKILVIAIYLLISCIILFIGLVLIGFVIPPSNISIGQALLASLLIWLTSLWQIPLCLFLARKF 150 (241)
T ss_pred EeecCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33334478899999999987776666655543222 122322 2344566666777777777777777777554
No 57
>TIGR01248 drrC daunorubicin resistance protein C. The model describes daunorubicin resistance protein C in bacteria. This protein confers the function of daunorubicin resistance. The protein seems to share strong sequence similarity to UvrA proteins, which are involved in excision repair of DNA. Disruption of drrC gene showed increased sensitivity upon exposure to duanorubicin. However it failed to complement uvrA mutants to exposure to UV irradiation. The mechanism on how it confers duanomycin resistance is unclear, but has been suggested to be different from DrrA and DrrB which are antiporters.
Probab=55.79 E-value=1.3e+02 Score=25.49 Aligned_cols=52 Identities=12% Similarity=0.040 Sum_probs=42.2
Q ss_pred hhhhhHHHHhhcCCCcchhHHHHHHHhHHhhHHHHHHHHHHHHHhhcccccchh
Q psy1567 178 CSELPLFMREHQNGMYRVDVYFLCKTLAEVPIFLAIPVIFTSVMYYMVHLNPIF 231 (463)
Q Consensus 178 ~~er~i~~rE~~~g~Y~~~~Y~~a~~~~~~p~~~~~~~v~~~i~Y~~~gl~~~~ 231 (463)
-+|+..++|-+..-. +...|+++|++...-..+++..+...+-+. .|.+.+.
T Consensus 15 dr~~G~~~~l~~tP~-~~~~~~~g~~l~~~~~~~~~~~ii~~v~~~-~g~~~~~ 66 (152)
T TIGR01248 15 DREIGLLSRLWVLPI-HRASALLARIIAETIRAFIGTILILAIALA-LGFRFRN 66 (152)
T ss_pred HHHhHHHHHHHhCCC-ChHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HhcCCCC
Confidence 456677888887777 788999999999999999998888888754 4888763
No 58
>PF10766 DUF2592: Protein of unknown function (DUF2592); InterPro: IPR019702 This entry represents proteins with unknown function, and appear to be restricted to Enterobacteriaceae. Some members are annotated as ybhY.
Probab=55.62 E-value=22 Score=22.28 Aligned_cols=22 Identities=23% Similarity=0.534 Sum_probs=17.9
Q ss_pred hhHHHHHHHHHHHHHHHHHHhc
Q psy1567 290 TLMKVRLLQTLMVSIMIGLIYF 311 (463)
Q Consensus 290 ~~~~~~l~~~~~~~~i~g~~f~ 311 (463)
+..+..+..|+++++++|.+|.
T Consensus 4 Sl~fa~iMVPVvma~ilglIyG 25 (41)
T PF10766_consen 4 SLAFAVIMVPVVMALILGLIYG 25 (41)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 4556678889999999999985
No 59
>PF13829 DUF4191: Domain of unknown function (DUF4191)
Probab=55.57 E-value=1.6e+02 Score=26.79 Aligned_cols=47 Identities=26% Similarity=0.229 Sum_probs=29.7
Q ss_pred CCCCcHHHHHHHHHHHhhHhhccChhHHHHHHHHHHHHHHHHHHHHh
Q psy1567 96 PYKANWWTQFKAVLWRSWLSVRKDPTLMKVRLLQTLMVSIMIGLIYF 142 (463)
Q Consensus 96 ~~~~~~~~q~~~L~~R~~~~~~Rn~~~~~~r~~~~~~~ali~g~~f~ 142 (463)
+...+.+.|++..++=+=+..-+=+.....-++..+.+++++|+++-
T Consensus 4 ~k~~~~~~Qi~q~y~~trk~dp~l~~~ml~a~l~~~~v~v~ig~l~~ 50 (224)
T PF13829_consen 4 PKKPGRRKQIWQAYKMTRKEDPKLPWLMLGAFLGPIAVFVLIGLLFG 50 (224)
T ss_pred cccchHHHHHHHHHHHHHHHCcchHHHHHHHHHHHHHHHHHHHHHHc
Confidence 34678899998888766444333334444445556677777777754
No 60
>PF13829 DUF4191: Domain of unknown function (DUF4191)
Probab=52.82 E-value=1.8e+02 Score=26.45 Aligned_cols=48 Identities=25% Similarity=0.225 Sum_probs=36.2
Q ss_pred CCCCCCHHHHHHHHHHHhhhhhccChhhHHHHHHHHHHHHHHHHHHhc
Q psy1567 264 SPYKANWWTQFKAVLWRSWLSVRKDPTLMKVRLLQTLMVSIMIGLIYF 311 (463)
Q Consensus 264 ~~~~~s~~~q~~~l~~R~~~~~~R~~~~~~~~l~~~~~~~~i~g~~f~ 311 (463)
.+...+..+|++...+-.-+...+=+..+...++.+++.++++|+++.
T Consensus 3 k~k~~~~~~Qi~q~y~~trk~dp~l~~~ml~a~l~~~~v~v~ig~l~~ 50 (224)
T PF13829_consen 3 KPKKPGRRKQIWQAYKMTRKEDPKLPWLMLGAFLGPIAVFVLIGLLFG 50 (224)
T ss_pred ccccchHHHHHHHHHHHHHHHCcchHHHHHHHHHHHHHHHHHHHHHHc
Confidence 345667888888877776666666667777778888888888888875
No 61
>PRK11026 ftsX cell division ABC transporter subunit FtsX; Provisional
Probab=49.27 E-value=41 Score=32.45 Aligned_cols=46 Identities=7% Similarity=0.188 Sum_probs=35.9
Q ss_pred CCCCcHHHHHHHHHHHhhHhhccChhHHHHHHHHHHHHHHHHHHHH
Q psy1567 96 PYKANWWTQFKAVLWRSWLSVRKDPTLMKVRLLQTLMVSIMIGLIY 141 (463)
Q Consensus 96 ~~~~~~~~q~~~L~~R~~~~~~Rn~~~~~~r~~~~~~~ali~g~~f 141 (463)
.++.+|..|=...+|+.+++.+|||.....-+....+.=+++|..+
T Consensus 4 ~~~~~~~~~h~~~~~~~~~~l~rn~~~s~~si~~i~i~L~l~g~~~ 49 (309)
T PRK11026 4 QFTNGFNEQVRYAWRGALADLKRKPLATLLTVMVIAISLTLPSVCY 49 (309)
T ss_pred cccCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3578999999999999999999999998776665555444555443
No 62
>COG1511 Predicted membrane protein [Function unknown]
Probab=44.12 E-value=57 Score=36.01 Aligned_cols=102 Identities=17% Similarity=0.121 Sum_probs=74.7
Q ss_pred hhCCCCchhHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCChhhHHH
Q psy1567 357 HQNGMYRVDVYFLCKTLAEVPIFLAIPVIFTSVMYYMVHLNPIFSRFLTATLIITMVSTVATSFGYLISCISSSVSVALS 436 (463)
Q Consensus 357 ~~~~~y~~~~y~la~~~~~l~~~~~~~~i~~~i~y~~~g~~~~~~~f~~~~l~~~l~~~~~~~lg~~i~~~~~~~~~a~~ 436 (463)
...+.+....|+.++.+..+.....+..+....-..+.|..... -+.+++..+..++++..+-..+.+++. ..+..
T Consensus 610 ~~~~~~~~~~~~~~~~~~~i~~~~~q~~i~~~~~~~~l~~~~~~--~~~~~~~~i~~s~~f~~ii~~lv~~~g--~~g~~ 685 (780)
T COG1511 610 LSDGILNGRVYFFGKNLVFITLGLIQSLIVTLGLVLLLGVEVKS--PLLLVLFAIFSSVAFMIIIYLLVSLFG--NPGKF 685 (780)
T ss_pred ccccccchHHHHHHhhhHHHHHHHHHHHHHHhcCeEEEEeccCc--hhHHHHHHHHHHHHHHHHHHHHHHHhC--cchHH
Confidence 56777888999999999999999999988888888887776433 333344444555555555445555555 56677
Q ss_pred hhhHHHHHHHHhhhccccCCCccccc
Q psy1567 437 IGPPVIIPFLLFGGFFLNAGLMGVAI 462 (463)
Q Consensus 437 ~~~~~~~~~~l~sG~~i~~~~lP~~l 462 (463)
+..++++.++..+|-.-|.+..|..+
T Consensus 686 i~ivllvlq~~~~~G~~pi~~~~~~~ 711 (780)
T COG1511 686 IAIVLLVLQIAGSGGTFPIQLSPSFF 711 (780)
T ss_pred HHHHHHHHHHhccccccchhccHHHH
Confidence 78888888999999999998888653
No 63
>PF09847 DUF2074: Predicted permease (DUF2074); InterPro: IPR018646 This family has no known function.
Probab=40.91 E-value=4.1e+02 Score=27.14 Aligned_cols=122 Identities=12% Similarity=0.048 Sum_probs=60.8
Q ss_pred CCCCcHHHHHHHHHHHhhHhhccChhHHHHHHHHHHHHHHHHHHHHhCCCCCccccchhhhHHHHHHHHHHHHHHHHHHH
Q psy1567 96 PYKANWWTQFKAVLWRSWLSVRKDPTLMKVRLLQTLMVSIMIGLIYFGQNLDQDGVMNINGALFICLTNMTFQNVFAVIS 175 (463)
Q Consensus 96 ~~~~~~~~q~~~L~~R~~~~~~Rn~~~~~~r~~~~~~~ali~g~~f~~~~~~~~~~~~~~g~~f~~~~~~~~~~~~~~i~ 175 (463)
+++.+...-...+++..+|...|+++... -+...+..++..-....+.++... ...+..... ...+......
T Consensus 241 ~~~~k~~~~~~al~~KDlK~~~R~sq~l~-~~L~Pl~~~i~~i~~~~~~~~~~~------~~~~~i~~~-~~~ss~~~~~ 312 (449)
T PF09847_consen 241 KFKIKIRSPLLALFKKDLKILFRKSQLLF-GFLYPLVFVIPFIFMILSSGDPLS------LTIFYIIII-GVYSSMMSDA 312 (449)
T ss_pred eeccccCcchHHHHHHHHHHHHcchhHHH-HHHHHHHHHHHHHHHHhhcCchhH------HHHHHHHHH-HHHHHHHHHH
Confidence 34556666778899999999999988875 333344444443222222222111 222233333 2222333344
Q ss_pred HhhhhhhHHHHhhcCCCcchhHHHHHHHhHHhhHHHHHHHHHHHHHhhccc
Q psy1567 176 VFCSELPLFMREHQNGMYRVDVYFLCKTLAEVPIFLAIPVIFTSVMYYMVH 226 (463)
Q Consensus 176 ~f~~er~i~~rE~~~g~Y~~~~Y~~a~~~~~~p~~~~~~~v~~~i~Y~~~g 226 (463)
..-.|++.+.==+.-=. +...+..+|.+.-.-.-.....+..+......|
T Consensus 313 ~l~~E~~~~~~l~sLPi-~~~~~v~sKil~~~~i~~~l~~~i~i~~~~~~~ 362 (449)
T PF09847_consen 313 LLKIEGEGFEFLRSLPI-KKREFVRSKILIPSIIPSALSLIIVIVSSIYNG 362 (449)
T ss_pred HHHHhhhcchhHhhCCC-ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 55566665521111111 445788899887753333333333333333333
No 64
>PF12911 OppC_N: N-terminal TM domain of oligopeptide transport permease C
Probab=39.12 E-value=96 Score=20.93 Aligned_cols=42 Identities=7% Similarity=0.135 Sum_probs=23.8
Q ss_pred HHHhhhhhccChhhHHHHHHHHH-HHHHHHHHHhcCCCCChhh
Q psy1567 278 LWRSWLSVRKDPTLMKVRLLQTL-MVSIMIGLIYFGQNLDQDG 319 (463)
Q Consensus 278 ~~R~~~~~~R~~~~~~~~l~~~~-~~~~i~g~~f~~~~~~~~~ 319 (463)
.++.++++.|||.....-++..+ +...++|-++..-+.++.+
T Consensus 5 ~~~~~~~f~~nk~a~~gl~il~~~vl~ai~~p~~~p~~~~~~d 47 (56)
T PF12911_consen 5 WKDAWRRFRRNKLAVIGLIILLILVLLAIFAPFISPYDPNQQD 47 (56)
T ss_pred HHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHcCCCCcchhh
Confidence 45667777888887766655444 3334555555444333333
No 65
>PF12730 ABC2_membrane_4: ABC-2 family transporter protein
Probab=38.15 E-value=2.7e+02 Score=24.21 Aligned_cols=27 Identities=22% Similarity=0.204 Sum_probs=20.1
Q ss_pred chhHHHHHHHhHHhhHHHHHHHHHHHH
Q psy1567 194 RVDVYFLCKTLAEVPIFLAIPVIFTSV 220 (463)
Q Consensus 194 ~~~~Y~~a~~~~~~p~~~~~~~v~~~i 220 (463)
+...++.+|.++-....++..++...+
T Consensus 88 ~r~~~~~~K~~~~~~~~~~~~~~~~~~ 114 (232)
T PF12730_consen 88 SRKKIFLAKFIVILIIILLLFLISFLI 114 (232)
T ss_pred CccHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 667899999999987776666664433
No 66
>COG1113 AnsP Gamma-aminobutyrate permease and related permeases [Amino acid transport and metabolism]
Probab=38.09 E-value=4.5e+02 Score=26.80 Aligned_cols=164 Identities=13% Similarity=0.095 Sum_probs=83.6
Q ss_pred hhhhccChhhHHHHHHHHHHHHHHHHHHhcCCCCChhhhhhhhHHHHHHHHHHHHHHHHHHHHHhhhhh---h---HHHH
Q psy1567 282 WLSVRKDPTLMKVRLLQTLMVSIMIGLIYFGQNLDQDGVMNINGALFICLTNMTFQNVFAVISVFCSEL---P---LFMR 355 (463)
Q Consensus 282 ~~~~~R~~~~~~~~l~~~~~~~~i~g~~f~~~~~~~~~~~~~~~~lf~~~~~~~~~~~~~~i~~~~~er---~---~~~r 355 (463)
+++-.+||......+..++..|+++|.- ..-+-...-.-+.|.+.....+.-+ -++..+...+ . .+-+
T Consensus 11 l~rgL~~RHIqlIAiGGaIGtGLFlGSg-----~~I~~AGPSvlLaY~I~G~~~f~iM-RaLGEm~~~~p~~gSF~~~a~ 84 (462)
T COG1113 11 LKRGLKNRHIQLIAIGGAIGTGLFLGSG-----SAIAMAGPSVLLAYLIAGIFVFLIM-RALGEMLVANPVSGSFSDYAR 84 (462)
T ss_pred hhhhhHHHHHHHHHHhhhhhhhhhcccc-----hhhhhhCcHHHHHHHHHHHHHHHHH-HHHHHHHHhCCCCCcHHHHHH
Confidence 3444556677777777777777666532 2211111112223333333333322 3333332221 1 2233
Q ss_pred Hhh---CCCCchhHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCChh
Q psy1567 356 EHQ---NGMYRVDVYFLCKTLAEVPIFLAIPVIFTSVMYYMVHLNPIFSRFLTATLIITMVSTVATSFGYLISCISSSVS 432 (463)
Q Consensus 356 E~~---~~~y~~~~y~la~~~~~l~~~~~~~~i~~~i~y~~~g~~~~~~~f~~~~l~~~l~~~~~~~lg~~i~~~~~~~~ 432 (463)
|.- .|+...|.|....+++...- ...+-.-+-||.-+. |.|---+.+.+++...+++..-..-=.=.+..=.+
T Consensus 85 ~~lG~~Agf~tgW~YW~~wv~v~~ae---~tAi~~y~~~WfP~v-P~Wv~al~~~~l~~~~NL~sVk~FGE~EfWfAlIK 160 (462)
T COG1113 85 KYLGPWAGFLTGWTYWFFWVLVGIAE---LTAIGIYLQFWFPDV-PQWVFALAAVVLLLAVNLISVKVFGELEFWFALIK 160 (462)
T ss_pred HHhcchHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHhcCCC-cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333 23334555665555553321 123444557787777 45544445555555555555544433333434467
Q ss_pred hHHHhhhHHHHHHHHhhhccccC
Q psy1567 433 VALSIGPPVIIPFLLFGGFFLNA 455 (463)
Q Consensus 433 ~a~~~~~~~~~~~~l~sG~~i~~ 455 (463)
++.++..++....++++|+--+.
T Consensus 161 V~aIi~~Iv~G~~ll~~g~~~~~ 183 (462)
T COG1113 161 VAAIIAFIVVGIVLLFGGFGGGG 183 (462)
T ss_pred HHHHHHHHHHHHHHHhhccCCCC
Confidence 88888899999999999886664
No 67
>PRK11026 ftsX cell division ABC transporter subunit FtsX; Provisional
Probab=37.47 E-value=66 Score=31.02 Aligned_cols=45 Identities=4% Similarity=0.135 Sum_probs=37.9
Q ss_pred CCCCCHHHHHHHHHHHhhhhhccChhhHHHHHHHHHHHHHHHHHH
Q psy1567 265 PYKANWWTQFKAVLWRSWLSVRKDPTLMKVRLLQTLMVSIMIGLI 309 (463)
Q Consensus 265 ~~~~s~~~q~~~l~~R~~~~~~R~~~~~~~~l~~~~~~~~i~g~~ 309 (463)
.+..+|.+|-...+|+.++..+|||...+..++...+..+++|..
T Consensus 4 ~~~~~~~~~h~~~~~~~~~~l~rn~~~s~~si~~i~i~L~l~g~~ 48 (309)
T PRK11026 4 QFTNGFNEQVRYAWRGALADLKRKPLATLLTVMVIAISLTLPSVC 48 (309)
T ss_pred cccCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 466789999999999999999999999998877776666666655
No 68
>PF10281 Ish1: Putative stress-responsive nuclear envelope protein; InterPro: IPR018803 This group of proteins, found primarily in fungi, consists of putative stress-responsive nuclear envelope protein Ish1 and homologues [].
Probab=37.20 E-value=69 Score=19.90 Aligned_cols=30 Identities=13% Similarity=0.207 Sum_probs=25.2
Q ss_pred hhHHHHHHhhcCCCCCCCCCchHHHHHHhc
Q psy1567 5 QQTFFQFGLRLGAACPSNYNPADYFIQLLA 34 (463)
Q Consensus 5 ~~~~~~yF~~~G~~cP~~~NpADf~ldv~~ 34 (463)
.++..+|+++.|.+-|+..+.-|.+++.+.
T Consensus 6 ~~~L~~wL~~~gi~~~~~~~~rd~Ll~~~k 35 (38)
T PF10281_consen 6 DSDLKSWLKSHGIPVPKSAKTRDELLKLAK 35 (38)
T ss_pred HHHHHHHHHHcCCCCCCCCCCHHHHHHHHH
Confidence 468889999999999988878888888763
No 69
>PHA02119 hypothetical protein
Probab=37.01 E-value=24 Score=25.08 Aligned_cols=21 Identities=19% Similarity=0.154 Sum_probs=16.8
Q ss_pred hhHHHHHHhhcCC--CCCCCCCc
Q psy1567 5 QQTFFQFGLRLGA--ACPSNYNP 25 (463)
Q Consensus 5 ~~~~~~yF~~~G~--~cP~~~Np 25 (463)
+++.++|..++|| .|..+.|-
T Consensus 56 ~~divdylr~lgy~~~~~s~rne 78 (87)
T PHA02119 56 PKDIVDYLRSLGYDAKSDSFRNE 78 (87)
T ss_pred cHHHHHHHHHccchhccccccCc
Confidence 5789999999998 57666664
No 70
>PF13559 DUF4129: Domain of unknown function (DUF4129)
Probab=34.85 E-value=85 Score=22.24 Aligned_cols=50 Identities=20% Similarity=0.426 Sum_probs=36.5
Q ss_pred hHHHHHHhhcCCCCCCCCCchHHHHHHhccCCCchhhhHHHHHHHHHHhhcChHH
Q psy1567 6 QTFFQFGLRLGAACPSNYNPADYFIQLLAVVPSREETCRNTIEMVCDTFDRSEYG 60 (463)
Q Consensus 6 ~~~~~yF~~~G~~cP~~~NpADf~ldv~~~~~~~~~~~~~~~~~~~~~~~~s~~~ 60 (463)
..++...++.|.+.++...|.||.-.+....+. ....+++.+.|.+..++
T Consensus 4 ~~l~~~~~~~g~~~~~~~T~~E~~~~l~~~~~~-----~~~~~~lt~~ye~~~Yg 53 (72)
T PF13559_consen 4 RALLRLLARRGIPRRPSETPREYARRLAQAGPP-----AEALEELTRLYERARYG 53 (72)
T ss_pred HHHHHHHHHcCCCCCCCcCHHHHHHHHHHhCCC-----hHHHHHHHHHHHHHHCC
Confidence 356778899999999999999999999543232 33466777777665544
No 71
>PF12911 OppC_N: N-terminal TM domain of oligopeptide transport permease C
Probab=33.05 E-value=1.1e+02 Score=20.54 Aligned_cols=37 Identities=8% Similarity=0.178 Sum_probs=21.5
Q ss_pred HHHhhHhhccChhHHHHHHHHHHHHHH-HHHHHHhCCC
Q psy1567 109 LWRSWLSVRKDPTLMKVRLLQTLMVSI-MIGLIYFGQN 145 (463)
Q Consensus 109 ~~R~~~~~~Rn~~~~~~r~~~~~~~al-i~g~~f~~~~ 145 (463)
.++.++...||+.....-++..+++.+ ++|-.+..-+
T Consensus 5 ~~~~~~~f~~nk~a~~gl~il~~~vl~ai~~p~~~p~~ 42 (56)
T PF12911_consen 5 WKDAWRRFRRNKLAVIGLIILLILVLLAIFAPFISPYD 42 (56)
T ss_pred HHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHcCCCC
Confidence 456777788999888666555443333 3343444433
No 72
>COG1682 TagG ABC-type polysaccharide/polyol phosphate export systems, permease component [Carbohydrate transport and metabolism / Cell envelope biogenesis, outer membrane]
Probab=31.40 E-value=4.4e+02 Score=24.68 Aligned_cols=123 Identities=13% Similarity=0.066 Sum_probs=69.8
Q ss_pred cHHHHHHHHHHHhhHhhccCh-hHHHHHHHHHHHHHHHHHHHHhCCCCCccccchhhhHHHHHHHHHHHH--HHHHHHHH
Q psy1567 100 NWWTQFKAVLWRSWLSVRKDP-TLMKVRLLQTLMVSIMIGLIYFGQNLDQDGVMNINGALFICLTNMTFQ--NVFAVISV 176 (463)
Q Consensus 100 ~~~~q~~~L~~R~~~~~~Rn~-~~~~~r~~~~~~~ali~g~~f~~~~~~~~~~~~~~g~~f~~~~~~~~~--~~~~~i~~ 176 (463)
..+.....|.+|.++...|+. -...--++...++.++.+.+|-.+-... ..+..-.+......+.+. +.+.+...
T Consensus 15 ~~~~li~~L~~~eik~Ryr~s~LG~~W~~l~P~~~~~~~~~vf~~l~~~~--~~~~~~~l~~G~~~w~f~~~~i~~~~~s 92 (263)
T COG1682 15 KYRRLIGALVKREIKTRYRRSVLGYLWSLLNPLLMILVYTLVFGALLRSP--GLNFLAYLLAGLILWFFFSEAISEGAGS 92 (263)
T ss_pred HHHHHHHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHHHHHHHHHHhCC--CcchHHHHHHHHHHHHHHHHHHHhHHHH
Confidence 357778889999999977654 3444445555566666666665543222 112221111222222221 12344455
Q ss_pred hhhhhhHHHHhhcCCCcchhHHHHHHHhHHhhHHHHHHHHHHHHHhhccccc
Q psy1567 177 FCSELPLFMREHQNGMYRVDVYFLCKTLAEVPIFLAIPVIFTSVMYYMVHLN 228 (463)
Q Consensus 177 f~~er~i~~rE~~~g~Y~~~~Y~~a~~~~~~p~~~~~~~v~~~i~Y~~~gl~ 228 (463)
+.++..++.|-+- ++..+.+++++.++-...+..++....+-+.-+.+
T Consensus 93 ~~~n~~li~k~~~----p~~~~~~~~~~~~~~~~~i~~iiil~~~i~~~~~~ 140 (263)
T COG1682 93 VVANAALIKKINF----PPLILPVARTLSRLFNFLIHLIIILIFLIILGVEP 140 (263)
T ss_pred hhhhHHHHhCCCC----CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCC
Confidence 5556666554332 78899999999998877777766655555554444
No 73
>TIGR00439 ftsX putative protein insertion permease FtsX. FtsX is an integral membrane protein encoded in the same operon as signal recognition particle docking protein FtsY and FtsE. It belongs to a family of predicted permeases and may play a role in the insertion of proteins required for potassium transport, cell division, and other activities. FtsE is a hydrophilic nucleotide-binding protein that associates with the inner membrane by means of association with FtsX.
Probab=30.03 E-value=1e+02 Score=29.71 Aligned_cols=44 Identities=11% Similarity=0.038 Sum_probs=32.9
Q ss_pred CCCcHHHHHHHHHHHhhHhhccChhHHHHHHHHHHHHHHHHHHH
Q psy1567 97 YKANWWTQFKAVLWRSWLSVRKDPTLMKVRLLQTLMVSIMIGLI 140 (463)
Q Consensus 97 ~~~~~~~q~~~L~~R~~~~~~Rn~~~~~~r~~~~~~~ali~g~~ 140 (463)
|..-|..|-+..+++.+++.+|||.....-++...+.-++.|..
T Consensus 5 ~~~~~~~~h~~~~~~~~~~l~r~~~~s~~si~ti~i~L~l~g~~ 48 (309)
T TIGR00439 5 YASVFSLQVEYARSALKQDLRQQPFGTLLTLIVIAVSLTLPLVM 48 (309)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHH
Confidence 55668999999999999999999999876655444444444443
No 74
>PF12760 Zn_Tnp_IS1595: Transposase zinc-ribbon domain; InterPro: IPR024442 This zinc binding domain is found in a range of transposase proteins such as ISSPO8, ISSOD11, ISRSSP2 etc. It may be a zinc-binding beta ribbon domain that could bind DNA.
Probab=29.22 E-value=48 Score=21.63 Aligned_cols=22 Identities=18% Similarity=0.451 Sum_probs=16.7
Q ss_pred cchhHHHHHHhhc----CCCCCCCCC
Q psy1567 3 PQQQTFFQFGLRL----GAACPSNYN 24 (463)
Q Consensus 3 ~~~~~~~~yF~~~----G~~cP~~~N 24 (463)
|+-+++.+||+++ |+.||.=.+
T Consensus 1 p~e~~c~~~l~~~RW~~g~~CP~Cg~ 26 (46)
T PF12760_consen 1 PDEEACREYLEEIRWPDGFVCPHCGS 26 (46)
T ss_pred CCHHHHHHHHHHhcCCCCCCCCCCCC
Confidence 4567889999988 778886544
No 75
>PF10011 DUF2254: Predicted membrane protein (DUF2254); InterPro: IPR018723 Members of this family of proteins comprises various hypothetical and putative membrane proteins. Their exact function, has not, as yet, been defined.
Probab=27.34 E-value=6.2e+02 Score=25.06 Aligned_cols=72 Identities=13% Similarity=0.221 Sum_probs=45.0
Q ss_pred HHHHHHHHHhH-HHHHHHHHHHHHHHhcCCcch--HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCChhhHHHhhhH
Q psy1567 368 FLCKTLAEVPI-FLAIPVIFTSVMYYMVHLNPI--FSRFLTATLIITMVSTVATSFGYLISCISSSVSVALSIGPP 440 (463)
Q Consensus 368 ~la~~~~~l~~-~~~~~~i~~~i~y~~~g~~~~--~~~f~~~~l~~~l~~~~~~~lg~~i~~~~~~~~~a~~~~~~ 440 (463)
++..-..+..+ .++.+++|++++....+-... .+++. ..+.+.+...|...+-.++-.++++.+..+++.-+
T Consensus 88 f~~d~~~q~vLg~Figtfvy~l~~l~~i~~~~~~~~p~~~-~~~a~~l~i~~v~~li~fI~~i~~~iqv~~ii~~i 162 (371)
T PF10011_consen 88 FMRDRVTQVVLGTFIGTFVYSLLVLIAIRSGDYGSVPRLS-VFIALALAILSVVLLIYFIHHIARSIQVSNIIARI 162 (371)
T ss_pred HHhCchHHHHHHHHHHHHHHHHHHHHHccccccccCcchH-HHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHH
Confidence 33333444433 456677888888777665443 34444 55566666677777777788887777776666544
No 76
>TIGR03061 pip_yhgE_Nterm YhgE/Pip N-terminal domain. This family contains the N-terminal domain of a family of multiple membrane-spanning proteins of Gram-positive bacteria. One member was shown to be a host protein essential for phage infection, so many members of this family are called "phage infection protein". A separate model, TIGR03062, represents the conserved C-terminal domain. The domains are separated by regions highly variable in both length and sequence, often containing extended heptad repeats as described in model TIGR03057.
Probab=26.00 E-value=1.1e+02 Score=26.18 Aligned_cols=33 Identities=15% Similarity=0.186 Sum_probs=21.6
Q ss_pred HhhHhhccChhHHHH---HHHHHHHHHHHHHHHHhC
Q psy1567 111 RSWLSVRKDPTLMKV---RLLQTLMVSIMIGLIYFG 143 (463)
Q Consensus 111 R~~~~~~Rn~~~~~~---r~~~~~~~ali~g~~f~~ 143 (463)
|.++..+|||..... -++..+++++++|..+.+
T Consensus 1 ~E~~~~~r~~~~~~~li~~~~~P~i~~~~~~~a~~~ 36 (164)
T TIGR03061 1 SELKRLRKNKLLRIALIAIMLIPLLYGGLFLWAFWD 36 (164)
T ss_pred ChHHHhhcCcHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 567888999965533 345555666667766653
No 77
>TIGR00439 ftsX putative protein insertion permease FtsX. FtsX is an integral membrane protein encoded in the same operon as signal recognition particle docking protein FtsY and FtsE. It belongs to a family of predicted permeases and may play a role in the insertion of proteins required for potassium transport, cell division, and other activities. FtsE is a hydrophilic nucleotide-binding protein that associates with the inner membrane by means of association with FtsX.
Probab=25.09 E-value=1.2e+02 Score=29.29 Aligned_cols=45 Identities=11% Similarity=0.029 Sum_probs=36.2
Q ss_pred CCCCCHHHHHHHHHHHhhhhhccChhhHHHHHHHHHHHHHHHHHH
Q psy1567 265 PYKANWWTQFKAVLWRSWLSVRKDPTLMKVRLLQTLMVSIMIGLI 309 (463)
Q Consensus 265 ~~~~s~~~q~~~l~~R~~~~~~R~~~~~~~~l~~~~~~~~i~g~~ 309 (463)
.|..-|..|-+...++.+++.+|||......+....+..+++|..
T Consensus 4 ~~~~~~~~~h~~~~~~~~~~l~r~~~~s~~si~ti~i~L~l~g~~ 48 (309)
T TIGR00439 4 HYASVFSLQVEYARSALKQDLRQQPFGTLLTLIVIAVSLTLPLVM 48 (309)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHH
Confidence 355668889999999999999999999988777766666666655
No 78
>TIGR01190 ccmB heme exporter protein CcmB. This model describes the cyt c biogenesis protein encoded by ccmB in bacteria. Bacterial c-type cytochromes are located on the periplasmic side of the cytoplasmic membrane. Several gene products encoded in a locus designated as 'ccm' are implicated in the transport and assembly of the functional cytochrome C. This cluster includes genes: ccmA;B;C;D;E;F;G and H. The posttranslational pathway includes the transport of heme moiety, the secretion of the apoprotein and the covalent attachment of the heme with the apoprotein. The proteins ccmA and B represent an ABC transporter; ccmC and D participate in heme transfer to ccmE, which function as a periplasmic heme chaperone. The presence of ccmF, G and H is suggested to be obligatory for the final functional assembly of cytochrome C.
Probab=23.62 E-value=5.5e+02 Score=23.19 Aligned_cols=110 Identities=15% Similarity=0.136 Sum_probs=61.7
Q ss_pred HHHHhhHhhccChhHHHHHHHHHHHHHHHHHHHHhCCCCCccccchhhhHHHHHH-HHHHHHHHHHHHHHhhhhhhHHHH
Q psy1567 108 VLWRSWLSVRKDPTLMKVRLLQTLMVSIMIGLIYFGQNLDQDGVMNINGALFICL-TNMTFQNVFAVISVFCSELPLFMR 186 (463)
Q Consensus 108 L~~R~~~~~~Rn~~~~~~r~~~~~~~ali~g~~f~~~~~~~~~~~~~~g~~f~~~-~~~~~~~~~~~i~~f~~er~i~~r 186 (463)
+.+|.++.-+|++.....-+.-..++..+ +-+.++.|++...+...-++... .+....+. ...|.+
T Consensus 1 ~~~kDl~l~~r~~~~~~~~llF~l~vi~l---f~la~gp~~~~l~~~apgilWva~lfa~ll~l----------~rlF~~ 67 (211)
T TIGR01190 1 LIRRDLRLAFRAGGGILNPLWFFLIVVTL---FPFGVGPELKLLSRIAPGIVWVGALLSSLLSL----------DRLFRD 67 (211)
T ss_pred CcHHHHHHHHcccchHHHHHHHHHHHHHH---HHhhcCCcHHHHHHHHHHHHHHHHHHHHHHHh----------hHHHHH
Confidence 35899999999987774444433333333 33455555433333333333332 22222221 234666
Q ss_pred hhcCCC--------cchhHHHHHHHhHHhhHHHHHHHHHHHHHhhcccccch
Q psy1567 187 EHQNGM--------YRVDVYFLCKTLAEVPIFLAIPVIFTSVMYYMVHLNPI 230 (463)
Q Consensus 187 E~~~g~--------Y~~~~Y~~a~~~~~~p~~~~~~~v~~~i~Y~~~gl~~~ 230 (463)
|+++|. .+....+++|.++..-...+.-.+..-..-.+-|++..
T Consensus 68 d~e~g~Le~lll~p~~~~~i~l~K~la~wl~~~l~~~l~~p~~~~~l~~~~~ 119 (211)
T TIGR01190 68 DFEDGSLDLLMLSPTPLELTVLAKVLAHWLVTGLPLVLLSPLLALLLNLDVP 119 (211)
T ss_pred HHhCCcHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCch
Confidence 777763 25678889999988766655555555555556676653
No 79
>COG4279 Uncharacterized conserved protein [Function unknown]
Probab=20.57 E-value=82 Score=29.01 Aligned_cols=29 Identities=17% Similarity=0.345 Sum_probs=22.2
Q ss_pred hhHHHHHHhhcC--------------CCCCCCCCchHHHHHHh
Q psy1567 5 QQTFFQFGLRLG--------------AACPSNYNPADYFIQLL 33 (463)
Q Consensus 5 ~~~~~~yF~~~G--------------~~cP~~~NpADf~ldv~ 33 (463)
++++.+.|...| ..||++.||.-|+--+-
T Consensus 101 P~sIedvf~~~GL~LfP~t~~dl~~dCSCPD~anPCKHi~Avy 143 (266)
T COG4279 101 PESIEDVFVGNGLSLFPFTLRDLSTDCSCPDYANPCKHIAAVY 143 (266)
T ss_pred CchHHHHHHhcCcccCCCchhhcccccCCCCcccchHHHHHHH
Confidence 456778888875 46999999988876553
No 80
>PF12725 DUF3810: Protein of unknown function (DUF3810); InterPro: IPR024294 This family of bacterial proteins is functionally uncharacterised. Proteins in this family are typically between 333 and 377 amino acids in length and contain a conserved HEXXH sequence motif that is characteristic of metallopeptidases. This family may therefore belong to an as yet uncharacterised family of peptidase enzymes.
Probab=20.53 E-value=2.8e+02 Score=26.90 Aligned_cols=35 Identities=14% Similarity=0.285 Sum_probs=27.8
Q ss_pred hcCCCcchhHHHHHHHhHHhhHHHHHHHHHHHHHh
Q psy1567 188 HQNGMYRVDVYFLCKTLAEVPIFLAIPVIFTSVMY 222 (463)
Q Consensus 188 ~~~g~Y~~~~Y~~a~~~~~~p~~~~~~~v~~~i~Y 222 (463)
++.|.|...+-.++++..-+|+.+...+.+..|++
T Consensus 2 Ys~~iYp~i~~~l~~~~g~~PFSvgdi~~~~~il~ 36 (318)
T PF12725_consen 2 YSRGIYPVISKLLRRLFGWFPFSVGDILYYLLILF 36 (318)
T ss_pred ccCcchHHHHHHHHHhccCcChhHHHHHHHHHHHH
Confidence 35788999999999999999999877666655544
Done!