Query psy1567
Match_columns 463
No_of_seqs 211 out of 2441
Neff 9.4
Searched_HMMs 29240
Date Fri Aug 16 18:33:47 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy1567.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/1567hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2h1z_A Hybrid atracotoxin; bet 29.4 20 0.00067 21.3 1.0 12 15-26 6-17 (39)
2 1gxg_A Colicin E8 immunity pro 14.5 1.4E+02 0.0049 21.5 3.2 44 6-57 33-76 (85)
3 1fr2_A Colicin E9 immunity pro 11.8 1.1E+02 0.0037 22.2 1.9 44 6-57 34-77 (86)
4 3u43_A Colicin-E2 immunity pro 11.1 1.4E+02 0.0046 22.1 2.2 17 41-57 61-77 (94)
5 1d0d_A TAP, anticoagulant prot 10.4 40 0.0014 21.6 -0.7 13 17-29 37-49 (60)
6 1axh_A Atracotoxin-HVI, ACTX-H 10.3 55 0.0019 19.1 -0.1 9 16-24 8-16 (37)
7 2nwl_A GLTPH, glutamate sympor 10.1 1.1E+03 0.037 22.5 9.5 63 367-429 44-108 (422)
8 1zpx_A Mini-collagen; cysteine 8.9 1.3E+02 0.0043 16.3 1.0 13 14-26 2-14 (26)
9 1loi_A Cyclic 3',5'-AMP specif 8.1 1.4E+02 0.0046 15.5 0.8 12 95-106 13-24 (26)
10 1kg1_A NIP1, necrosis inducing 7.6 1.4E+02 0.0047 18.7 0.9 9 15-23 49-57 (60)
No 1
>2h1z_A Hybrid atracotoxin; beta-hairpin, cystine knot; NMR {Hadronyche versuta}
Probab=29.35 E-value=20 Score=21.25 Aligned_cols=12 Identities=25% Similarity=0.625 Sum_probs=10.0
Q ss_pred cCCCCCCCCCch
Q psy1567 15 LGAACPSNYNPA 26 (463)
Q Consensus 15 ~G~~cP~~~NpA 26 (463)
-|-|||.+++|.
T Consensus 6 sgQPCpyN~~pC 17 (39)
T 2h1z_A 6 VDQPCSLNTQPC 17 (39)
T ss_dssp TTSBCCTTSCCB
T ss_pred CCCCCCCCcccc
Confidence 478999999984
No 2
>1gxg_A Colicin E8 immunity protein; inhibitor, inhibitor protein of DNAse colicin E8, bacteriocin immunity, plasmid,; NMR {Escherichia coli} SCOP: a.28.2.1 PDB: 1gxh_A
Probab=14.49 E-value=1.4e+02 Score=21.50 Aligned_cols=44 Identities=7% Similarity=0.111 Sum_probs=22.8
Q ss_pred hHHHHHHhhcCCCCCCCCCchHHHHHHhccCCCchhhhHHHHHHHHHHhhcC
Q psy1567 6 QTFFQFGLRLGAACPSNYNPADYFIQLLAVVPSREETCRNTIEMVCDTFDRS 57 (463)
Q Consensus 6 ~~~~~yF~~~G~~cP~~~NpADf~ldv~~~~~~~~~~~~~~~~~~~~~~~~s 57 (463)
++++++|+++ .++|.+. |++--....++.+++.+-+-+..|+.+
T Consensus 33 d~ll~~f~~~-teHP~gS-------DLIfyP~~~~e~spE~Iv~~ik~wRa~ 76 (85)
T 1gxg_A 33 DDNLEHFISV-TEHPSGS-------DLIYYPEGNNDGSPEAVIKEIKEWRAA 76 (85)
T ss_dssp HHHHHHHHHT-TCCTTTT-------HHHHSCCTTCCSSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHh-cCCCCcC-------ceeecCCCCCCCCHHHHHHHHHHHHHH
Confidence 4566666666 4444442 333333333445555666666666654
No 3
>1fr2_A Colicin E9 immunity protein; protein-protein complex, zinc containing enzyme, HNH-motif, immune system; 1.60A {Escherichia coli} SCOP: a.28.2.1 PDB: 1e0h_A 1emv_A 1imp_A 1imq_A 2k5x_A 2vln_A 2vlp_A 2vlq_A 2vlo_A 2gzf_A 2gzg_A 2gzi_A 2gyk_A 2gzj_A 2gze_A 1bxi_A 3gkl_C 3gjn_A
Probab=11.76 E-value=1.1e+02 Score=22.23 Aligned_cols=44 Identities=9% Similarity=0.114 Sum_probs=20.2
Q ss_pred hHHHHHHhhcCCCCCCCCCchHHHHHHhccCCCchhhhHHHHHHHHHHhhcC
Q psy1567 6 QTFFQFGLRLGAACPSNYNPADYFIQLLAVVPSREETCRNTIEMVCDTFDRS 57 (463)
Q Consensus 6 ~~~~~yF~~~G~~cP~~~NpADf~ldv~~~~~~~~~~~~~~~~~~~~~~~~s 57 (463)
++++++|+++ .++|.+. |++--....++.+++.+-+-+..|+.+
T Consensus 34 d~ll~~f~~~-teHP~gS-------DLIfyP~~~~e~spE~Iv~~ik~wRa~ 77 (86)
T 1fr2_A 34 VKLVTHFAEM-TEHPSGS-------DLIYYPKEGDDDSPSGIVNTVKQWRAA 77 (86)
T ss_dssp HHHHHHHHHH-HCCTTTT-------HHHHSCCTTCCCSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHh-cCCCCcC-------ceeecCCCCCCCCHHHHHHHHHHHHHH
Confidence 3455555555 3344331 333222223344555555555556544
No 4
>3u43_A Colicin-E2 immunity protein; protein-protein complex, DNAse, high affinity, protein bindi; 1.72A {Escherichia coli} PDB: 2no8_A 2wpt_A
Probab=11.11 E-value=1.4e+02 Score=22.10 Aligned_cols=17 Identities=12% Similarity=0.091 Sum_probs=9.0
Q ss_pred hhhHHHHHHHHHHhhcC
Q psy1567 41 ETCRNTIEMVCDTFDRS 57 (463)
Q Consensus 41 ~~~~~~~~~~~~~~~~s 57 (463)
+.+++.+-+-...|+.+
T Consensus 61 e~SPEgIv~~IKeWRa~ 77 (94)
T 3u43_A 61 EDSPEGIVKEIKEWRAA 77 (94)
T ss_dssp CSSHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHH
Confidence 44555555555556544
No 5
>1d0d_A TAP, anticoagulant protein; factor XA inhibitor, kunitz inhibitor, blood clotting inhibitor; 1.62A {Ornithodoros moubata} SCOP: g.8.1.2 PDB: 1kig_I 1tap_A 1tcp_A
Probab=10.42 E-value=40 Score=21.60 Aligned_cols=13 Identities=38% Similarity=0.866 Sum_probs=11.2
Q ss_pred CCCCCCCCchHHH
Q psy1567 17 AACPSNYNPADYF 29 (463)
Q Consensus 17 ~~cP~~~NpADf~ 29 (463)
+.||+..|-+||+
T Consensus 37 wicpe~~~g~dyy 49 (60)
T 1d0d_A 37 WICPEDHTGADYY 49 (60)
T ss_dssp EECTTTCCSCCCC
T ss_pred eECCccCCCccch
Confidence 4799999999986
No 6
>1axh_A Atracotoxin-HVI, ACTX-HVI; neurotoxin, insecticidal toxin, cystine knot, funnel-WEB; NMR {Hadronyche versuta} SCOP: g.3.6.2
Probab=10.32 E-value=55 Score=19.07 Aligned_cols=9 Identities=56% Similarity=1.066 Sum_probs=6.0
Q ss_pred CCCCCCCCC
Q psy1567 16 GAACPSNYN 24 (463)
Q Consensus 16 G~~cP~~~N 24 (463)
|-|||.+++
T Consensus 8 gQPCpyne~ 16 (37)
T 1axh_A 8 GQPCPYNEN 16 (37)
T ss_dssp TSBCSSGGG
T ss_pred CCcCCCccc
Confidence 667776654
No 7
>2nwl_A GLTPH, glutamate symport protein; alpha helical, membrane protein, helical hairpin, unwound RE transport protein; HET: PLM; 2.96A {Pyrococcus horikoshii} PDB: 2nww_A* 1xfh_A* 2nwx_A* 3v8g_A 3v8f_A 3kbc_A
Probab=10.09 E-value=1.1e+03 Score=22.48 Aligned_cols=63 Identities=13% Similarity=0.288 Sum_probs=47.0
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHhcCCc-chHHHH-HHHHHHHHHHHHHHHHHHHHHHHhcC
Q psy1567 367 YFLCKTLAEVPIFLAIPVIFTSVMYYMVHLN-PIFSRF-LTATLIITMVSTVATSFGYLISCISS 429 (463)
Q Consensus 367 y~la~~~~~l~~~~~~~~i~~~i~y~~~g~~-~~~~~f-~~~~l~~~l~~~~~~~lg~~i~~~~~ 429 (463)
..+++....+...++.+++++.+.--..+++ ...++. ..-...+.+++..+..+|..++.+.+
T Consensus 44 ~~~G~lFi~llkmiv~PLVf~siv~gia~l~~~~~gri~~~ti~~~~~tt~iA~~igl~~~~~~~ 108 (422)
T 2nwl_A 44 KPFGDLFVRLLKMLVMPIVFASLVVGAASISPARLGRVGVKIVVYYLLTSAFAVTLGIIMARLFN 108 (422)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTTSCTTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 4467777788889999999999999888884 345553 44555566666777778888888765
No 8
>1zpx_A Mini-collagen; cysteine-rich peptide, structural protein; NMR {Synthetic}
Probab=8.88 E-value=1.3e+02 Score=16.29 Aligned_cols=13 Identities=46% Similarity=0.805 Sum_probs=9.7
Q ss_pred hcCCCCCCCCCch
Q psy1567 14 RLGAACPSNYNPA 26 (463)
Q Consensus 14 ~~G~~cP~~~NpA 26 (463)
.+|+.||...-||
T Consensus 2 pC~~~CPa~CAPa 14 (26)
T 1zpx_A 2 PCGSYCPSVCAPA 14 (26)
T ss_dssp CCSSSSCTTSTTS
T ss_pred CCCCCCccccccc
Confidence 4678888877765
No 9
>1loi_A Cyclic 3',5'-AMP specific phosphodiesterase RD1; hydrolase, C-AMP phosphodiesterase; NMR {Rattus norvegicus} SCOP: j.51.1.1
Probab=8.06 E-value=1.4e+02 Score=15.54 Aligned_cols=12 Identities=50% Similarity=1.428 Sum_probs=9.0
Q ss_pred CCCCCcHHHHHH
Q psy1567 95 SPYKANWWTQFK 106 (463)
Q Consensus 95 ~~~~~~~~~q~~ 106 (463)
.++-.+||.||+
T Consensus 13 kpwlvgwwdqfk 24 (26)
T 1loi_A 13 KPWLVGWWDQFK 24 (26)
T ss_dssp CTTGGGGHHHHT
T ss_pred CchhhhhHHHhc
Confidence 346788999985
No 10
>1kg1_A NIP1, necrosis inducing protein 1; antiparalel beta sheets, toxin; NMR {Rhynchosporium secalis} SCOP: g.70.1.1
Probab=7.63 E-value=1.4e+02 Score=18.72 Aligned_cols=9 Identities=44% Similarity=1.106 Sum_probs=7.2
Q ss_pred cCCCCCCCC
Q psy1567 15 LGAACPSNY 23 (463)
Q Consensus 15 ~G~~cP~~~ 23 (463)
.||.||.++
T Consensus 49 ngfqcptgy 57 (60)
T 1kg1_A 49 NGFQCPTGY 57 (60)
T ss_dssp SCBCCCTTC
T ss_pred CcccCCccc
Confidence 589999875
Done!