RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy1567
(463 letters)
>gnl|CDD|233207 TIGR00955, 3a01204, The Eye Pigment Precursor Transporter (EPP)
Family protein. [Transport and binding proteins,
Other].
Length = 617
Score = 287 bits (737), Expect = 9e-91
Identities = 119/197 (60%), Positives = 155/197 (78%)
Query: 260 VANRSPYKANWWTQFKAVLWRSWLSVRKDPTLMKVRLLQTLMVSIMIGLIYFGQNLDQDG 319
Y A+WWTQF A+L RSWLSV +DP L+KVRL+QT+M +I+IGLIY GQ L Q G
Sbjct: 329 NMEGIGYNASWWTQFYALLKRSWLSVLRDPLLLKVRLIQTMMTAILIGLIYLGQGLTQKG 388
Query: 320 VMNINGALFICLTNMTFQNVFAVISVFCSELPLFMREHQNGMYRVDVYFLCKTLAEVPIF 379
V NINGALF+ LTNMTFQNVF VI+VF +ELP+F+RE ++G+YRV YFL KT+AE+P+F
Sbjct: 389 VQNINGALFLFLTNMTFQNVFPVINVFTAELPVFLRETRSGLYRVSAYFLAKTIAELPLF 448
Query: 380 LAIPVIFTSVMYYMVHLNPIFSRFLTATLIITMVSTVATSFGYLISCISSSVSVALSIGP 439
+ +P +FTS+ Y+M+ L + FLT ++T+V+ VATSFGYLISC SS S+AL++GP
Sbjct: 449 IILPALFTSITYWMIGLRSGATHFLTFLFLVTLVANVATSFGYLISCAFSSTSMALTVGP 508
Query: 440 PVIIPFLLFGGFFLNAG 456
P +IPFLLFGGFF+N+
Sbjct: 509 PFVIPFLLFGGFFINSD 525
Score = 259 bits (665), Expect = 4e-80
Identities = 114/229 (49%), Positives = 154/229 (67%), Gaps = 8/229 (3%)
Query: 15 LGAACPSNYNPADYFIQLLAVVPSREETCRNTIEMVCDTFDRSEYGIKLAQATELRGDLQ 74
LG CP NYNPAD+++Q+LAV+P E R IE +CD+F S+ G + T L
Sbjct: 261 LGHPCPENYNPADFYVQVLAVIPGSENESRERIEKICDSFAVSDIGRDMLVNTNLWSGKA 320
Query: 75 AKAILGGKMDIFSNGNVANRSPYKANWWTQFKAVLWRSWLSVRKDPTLMKVRLLQTLMVS 134
+ + Y A+WWTQF A+L RSWLSV +DP L+KVRL+QT+M +
Sbjct: 321 GGLV--------KDSENMEGIGYNASWWTQFYALLKRSWLSVLRDPLLLKVRLIQTMMTA 372
Query: 135 IMIGLIYFGQNLDQDGVMNINGALFICLTNMTFQNVFAVISVFCSELPLFMREHQNGMYR 194
I+IGLIY GQ L Q GV NINGALF+ LTNMTFQNVF VI+VF +ELP+F+RE ++G+YR
Sbjct: 373 ILIGLIYLGQGLTQKGVQNINGALFLFLTNMTFQNVFPVINVFTAELPVFLRETRSGLYR 432
Query: 195 VDVYFLCKTLAEVPIFLAIPVIFTSVMYYMVHLNPIFSRFLTATLIITM 243
V YFL KT+AE+P+F+ +P +FTS+ Y+M+ L + FLT ++T+
Sbjct: 433 VSAYFLAKTIAELPLFIILPALFTSITYWMIGLRSGATHFLTFLFLVTL 481
>gnl|CDD|216273 pfam01061, ABC2_membrane, ABC-2 type transporter.
Length = 210
Score = 110 bits (276), Expect = 5e-28
Identities = 62/191 (32%), Positives = 99/191 (51%), Gaps = 4/191 (2%)
Query: 272 TQFKAVLWRSWLSVRKDPTL-MKVRLLQTLMVSIMIGLIYFGQNLDQDGVMNINGALFIC 330
TQ KA+L R +L +DP+L + RL+Q L+++++ G + FG G +N G LF
Sbjct: 1 TQLKALLKREFLRRWRDPSLGLLWRLIQPLLMALVFGTV-FGNLDTSLGGLNRPGLLFFS 59
Query: 331 LTNMTFQNVFAVISVFCSELPLFMREHQNGMYRVDVYFLCKTLAEVPIFLAIPVIFTSVM 390
+ F ++ + VF E + RE + +Y Y L K L E+PI L +IF ++
Sbjct: 60 ILFNAFSSLTGISPVFIRERGVLERELASPLYSPSAYVLAKILVELPISLLQAIIFLLIV 119
Query: 391 YYMVHLNPIFSRFLTATLIITMVSTVATSFGYLISCISSSVSVALSIGPPVIIPFLLFGG 450
Y+MV L SRF L++ + + A+ G I+ ++ S A IGP +++P LL G
Sbjct: 120 YFMVGLPV--SRFFLFLLVLLLTALAASGLGLFIAALAPSFEDASQIGPLLLLPLLLLSG 177
Query: 451 FFLNAGLMGVA 461
FF+ M
Sbjct: 178 FFIPVDSMPGW 188
Score = 78.8 bits (195), Expect = 6e-17
Identities = 47/142 (33%), Positives = 75/142 (52%), Gaps = 4/142 (2%)
Query: 103 TQFKAVLWRSWLSVRKDPTL-MKVRLLQTLMVSIMIGLIYFGQNLDQDGVMNINGALFIC 161
TQ KA+L R +L +DP+L + RL+Q L+++++ G + FG G +N G LF
Sbjct: 1 TQLKALLKREFLRRWRDPSLGLLWRLIQPLLMALVFGTV-FGNLDTSLGGLNRPGLLFFS 59
Query: 162 LTNMTFQNVFAVISVFCSELPLFMREHQNGMYRVDVYFLCKTLAEVPIFLAIPVIFTSVM 221
+ F ++ + VF E + RE + +Y Y L K L E+PI L +IF ++
Sbjct: 60 ILFNAFSSLTGISPVFIRERGVLERELASPLYSPSAYVLAKILVELPISLLQAIIFLLIV 119
Query: 222 YYMVHLNPIFSRFLTATLIITM 243
Y+MV L SRF L++ +
Sbjct: 120 YFMVGLPV--SRFFLFLLVLLL 139
>gnl|CDD|233208 TIGR00956, 3a01205, Pleiotropic Drug Resistance (PDR) Family
protein. [Transport and binding proteins, Other].
Length = 1394
Score = 80.9 bits (200), Expect = 5e-16
Identities = 34/201 (16%), Positives = 91/201 (45%), Gaps = 1/201 (0%)
Query: 259 NVANRSPYKANWWTQFKAVLWRSWLSVRKDPTLMKVRLLQTLMVSIMIGLIYFGQNLDQD 318
SPY ++ Q K L R++L ++ +P+ + +++++++ +++ +
Sbjct: 389 RTRPSSPYTVSFSMQVKYCLARNFLRMKGNPSFTLFMVFGNIIMALILSSVFYNLPKNTS 448
Query: 319 GVMNINGALFICLTNMTFQNVFAVISVFCSELPLFMREHQNGMYRVDVYFLCKTLAEVPI 378
+ GALF + F ++ + S++ P+ + + +Y + ++E+P
Sbjct: 449 DFYSRGGALFFAILFNAFSSLLEIASMY-EARPIVEKHRKYALYHPSADAIASIISEIPF 507
Query: 379 FLAIPVIFTSVMYYMVHLNPIFSRFLTATLIITMVSTVATSFGYLISCISSSVSVALSIG 438
+ V+F ++Y+MV+ RF LI+ + + + I ++ ++S A++
Sbjct: 508 KIIESVVFNIILYFMVNFRRTAGRFFFYLLILFICTLAMSHLFRSIGAVTKTLSEAMTPA 567
Query: 439 PPVIIPFLLFGGFFLNAGLMG 459
+++ ++ GF + M
Sbjct: 568 AILLLALSIYTGFAIPRPSML 588
Score = 67.4 bits (165), Expect = 7e-12
Identities = 28/161 (17%), Positives = 72/161 (44%), Gaps = 1/161 (0%)
Query: 90 NVANRSPYKANWWTQFKAVLWRSWLSVRKDPTLMKVRLLQTLMVSIMIGLIYFGQNLDQD 149
SPY ++ Q K L R++L ++ +P+ + +++++++ +++ +
Sbjct: 389 RTRPSSPYTVSFSMQVKYCLARNFLRMKGNPSFTLFMVFGNIIMALILSSVFYNLPKNTS 448
Query: 150 GVMNINGALFICLTNMTFQNVFAVISVFCSELPLFMREHQNGMYRVDVYFLCKTLAEVPI 209
+ GALF + F ++ + S++ P+ + + +Y + ++E+P
Sbjct: 449 DFYSRGGALFFAILFNAFSSLLEIASMY-EARPIVEKHRKYALYHPSADAIASIISEIPF 507
Query: 210 FLAIPVIFTSVMYYMVHLNPIFSRFLTATLIITMAKAILGG 250
+ V+F ++Y+MV+ RF LI+ + +
Sbjct: 508 KIIESVVFNIILYFMVNFRRTAGRFFFYLLILFICTLAMSH 548
Score = 63.2 bits (154), Expect = 2e-10
Identities = 39/196 (19%), Positives = 71/196 (36%), Gaps = 7/196 (3%)
Query: 263 RSPYKANWWTQFKAVLWRSWLSVRKDPTLMKVRLLQTLMVSIMIGLIYFGQNLDQDGVMN 322
S Y A+ W QFK VLWR++ + P + + T+ ++ IG +F G+ N
Sbjct: 1069 LSKYAASLWYQFKLVLWRTFQQYWRTPDYLYSKFFLTIFAALFIGFTFFKVGTSLQGLQN 1128
Query: 323 INGALFICLTNMTFQNVFAVISVFCSELPLFMREHQNGMYRVDVYFLCKTLAEVPIFLAI 382
A+F+ + +RE + + + + E+P L
Sbjct: 1129 QMFAVFMATVLFNPLIQQYLPPFVAQRDLYEVRERPSRTFSWLAFIAAQITVEIPYNLVA 1188
Query: 383 PVIFTSVMYYMV-------HLNPIFSRFLTATLIITMVSTVATSFGYLISCISSSVSVAL 435
IF + YY V + R + L+ TM ++ G ++ + + A
Sbjct: 1189 GTIFFFIWYYPVGFYWNASKTGQVHERGVLFWLLSTMFFLYFSTLGQMVISFNPNADNAA 1248
Query: 436 SIGPPVIIPFLLFGGF 451
+ + L F G
Sbjct: 1249 VLASLLFTMCLSFCGV 1264
Score = 62.4 bits (152), Expect = 3e-10
Identities = 48/238 (20%), Positives = 84/238 (35%), Gaps = 32/238 (13%)
Query: 19 CPSNYNPADYFIQLLAVVPSRE------ETCRNTIEMVCDTFDRSEYGIKLAQATELRGD 72
CP + NPA++ ++++ P E RN+ SEY + L +
Sbjct: 1007 CPEDANPAEWMLEVIGAAPGAHANQDYHEVWRNS----------SEYQAVKNELDRLEAE 1056
Query: 73 LQAKAILGGKMDIFSNGNVANRSPYKANWWTQFKAVLWRSWLSVRKDPTLMKVRLLQTLM 132
L + + S Y A+ W QFK VLWR++ + P + + T+
Sbjct: 1057 LSKAE---------DDNDPDALSKYAASLWYQFKLVLWRTFQQYWRTPDYLYSKFFLTIF 1107
Query: 133 VSIMIGLIYFGQNLDQDGVMNINGALFICLTNMTFQNVFAVISVFCSELPLFMREHQNGM 192
++ IG +F G+ N A+F+ + +RE +
Sbjct: 1108 AALFIGFTFFKVGTSLQGLQNQMFAVFMATVLFNPLIQQYLPPFVAQRDLYEVRERPSRT 1167
Query: 193 YRVDVYFLCKTLAEVPIFLAIPVIFTSVMYYMV-------HLNPIFSRFLTATLIITM 243
+ + + E+P L IF + YY V + R + L+ TM
Sbjct: 1168 FSWLAFIAAQITVEIPYNLVAGTIFFFIWYYPVGFYWNASKTGQVHERGVLFWLLSTM 1225
>gnl|CDD|215634 PLN03211, PLN03211, ABC transporter G-25; Provisional.
Length = 659
Score = 79.9 bits (197), Expect = 6e-16
Identities = 51/187 (27%), Positives = 92/187 (49%), Gaps = 3/187 (1%)
Query: 268 ANWWTQFKAVLWRSWLSVRKDPTLMKVRLLQTLMVSIMIGLIYFGQNLDQDGVMNINGAL 327
+ W+ QF +L RS L RK + +R+ Q + +++ GL+++ + D V + G L
Sbjct: 386 STWFNQFSILLQRS-LKERKHESFNTLRVFQVIAAALLAGLMWW--HSDFRDVQDRLGLL 442
Query: 328 FICLTNMTFQNVFAVISVFCSELPLFMREHQNGMYRVDVYFLCKTLAEVPIFLAIPVIFT 387
F F + VF E +F++E +GMY + YF+ + + ++P+ L +P IF
Sbjct: 443 FFISIFWGVFPSFNSVFVFPQERAIFVKERASGMYTLSSYFMARIVGDLPMELILPTIFL 502
Query: 388 SVMYYMVHLNPIFSRFLTATLIITMVSTVATSFGYLISCISSSVSVALSIGPPVIIPFLL 447
+V Y+M L P FL L++ V+ G + A +I ++ F+L
Sbjct: 503 TVTYWMAGLKPELGAFLLTLLVLLGYVLVSQGLGLALGAAIMDAKKASTIVTVTMLAFVL 562
Query: 448 FGGFFLN 454
GGF+++
Sbjct: 563 TGGFYVH 569
Score = 71.8 bits (176), Expect = 2e-13
Identities = 42/143 (29%), Positives = 74/143 (51%), Gaps = 3/143 (2%)
Query: 99 ANWWTQFKAVLWRSWLSVRKDPTLMKVRLLQTLMVSIMIGLIYFGQNLDQDGVMNINGAL 158
+ W+ QF +L RS L RK + +R+ Q + +++ GL+++ + D V + G L
Sbjct: 386 STWFNQFSILLQRS-LKERKHESFNTLRVFQVIAAALLAGLMWW--HSDFRDVQDRLGLL 442
Query: 159 FICLTNMTFQNVFAVISVFCSELPLFMREHQNGMYRVDVYFLCKTLAEVPIFLAIPVIFT 218
F F + VF E +F++E +GMY + YF+ + + ++P+ L +P IF
Sbjct: 443 FFISIFWGVFPSFNSVFVFPQERAIFVKERASGMYTLSSYFMARIVGDLPMELILPTIFL 502
Query: 219 SVMYYMVHLNPIFSRFLTATLII 241
+V Y+M L P FL L++
Sbjct: 503 TVTYWMAGLKPELGAFLLTLLVL 525
>gnl|CDD|215599 PLN03140, PLN03140, ABC transporter G family member; Provisional.
Length = 1470
Score = 71.0 bits (174), Expect = 7e-13
Identities = 48/191 (25%), Positives = 81/191 (42%), Gaps = 3/191 (1%)
Query: 266 YKANWWTQFKAVLWRSWLSVRKDPTLMKVRLLQTLMVSIMIGLIYF--GQNLDQDGVMN- 322
Y + W QFK+ LW+ W + + P VR TL ++M+G I++ G +
Sbjct: 1187 YSQSTWGQFKSCLWKQWWTYWRSPDYNLVRFFFTLAAALMVGTIFWKVGTKRSNANDLTM 1246
Query: 323 INGALFICLTNMTFQNVFAVISVFCSELPLFMREHQNGMYRVDVYFLCKTLAEVPIFLAI 382
+ GA++ + + N V + E +F RE GMY Y + + + E+P L
Sbjct: 1247 VIGAMYAAVLFVGINNCSTVQPMVAVERTVFYRERAAGMYSALPYAIAQVVCEIPYVLIQ 1306
Query: 383 PVIFTSVMYYMVHLNPIFSRFLTATLIITMVSTVATSFGYLISCISSSVSVALSIGPPVI 442
+T ++Y MV ++F I T +G + ++ + VA
Sbjct: 1307 TTYYTLIVYAMVAFEWTAAKFFWFYFISFFSFLYFTYYGMMTVSLTPNQQVAAIFAAAFY 1366
Query: 443 IPFLLFGGFFL 453
F LF GFF+
Sbjct: 1367 GLFNLFSGFFI 1377
Score = 64.9 bits (158), Expect = 6e-11
Identities = 36/132 (27%), Positives = 61/132 (46%), Gaps = 3/132 (2%)
Query: 97 YKANWWTQFKAVLWRSWLSVRKDPTLMKVRLLQTLMVSIMIGLIYF--GQNLDQDGVMN- 153
Y + W QFK+ LW+ W + + P VR TL ++M+G I++ G +
Sbjct: 1187 YSQSTWGQFKSCLWKQWWTYWRSPDYNLVRFFFTLAAALMVGTIFWKVGTKRSNANDLTM 1246
Query: 154 INGALFICLTNMTFQNVFAVISVFCSELPLFMREHQNGMYRVDVYFLCKTLAEVPIFLAI 213
+ GA++ + + N V + E +F RE GMY Y + + + E+P L
Sbjct: 1247 VIGAMYAAVLFVGINNCSTVQPMVAVERTVFYRERAAGMYSALPYAIAQVVCEIPYVLIQ 1306
Query: 214 PVIFTSVMYYMV 225
+T ++Y MV
Sbjct: 1307 TTYYTLIVYAMV 1318
Score = 62.2 bits (151), Expect = 3e-10
Identities = 43/187 (22%), Positives = 89/187 (47%), Gaps = 6/187 (3%)
Query: 274 FKAVLWRSWLSVRKDPTLMKVRLLQTLMVSIMIGLIYFGQNL----DQDGVMNINGALFI 329
KA + WL ++++ + + +Q ++V+ + ++ + ++DG + I LF
Sbjct: 518 LKACWDKEWLLMKRNAFVYVFKTVQIIIVAAIASTVFLRTEMHTRNEEDGALYIGALLFS 577
Query: 330 CLTNMTFQNVFAVISVFCSELPLFMREHQNGMYRVDVYFLCKTLAEVPIFLAIPVIFTSV 389
+ NM N FA +++ LP+F ++ + + L L +PI + V++ +
Sbjct: 578 MIINMF--NGFAELALMIQRLPVFYKQRDLLFHPPWTFTLPTFLLGIPISIIESVVWVVI 635
Query: 390 MYYMVHLNPIFSRFLTATLIITMVSTVATSFGYLISCISSSVSVALSIGPPVIIPFLLFG 449
YY + P SRF L++ ++ +A LI+ + ++ +A + G V++ L G
Sbjct: 636 TYYSIGFAPEASRFFKQLLLVFLIQQMAAGIFRLIASVCRTMIIANTGGALVLLLVFLLG 695
Query: 450 GFFLNAG 456
GF L G
Sbjct: 696 GFILPKG 702
Score = 49.1 bits (117), Expect = 5e-06
Identities = 32/150 (21%), Positives = 70/150 (46%), Gaps = 6/150 (4%)
Query: 105 FKAVLWRSWLSVRKDPTLMKVRLLQTLMVSIMIGLIYFGQNL----DQDGVMNINGALFI 160
KA + WL ++++ + + +Q ++V+ + ++ + ++DG + I LF
Sbjct: 518 LKACWDKEWLLMKRNAFVYVFKTVQIIIVAAIASTVFLRTEMHTRNEEDGALYIGALLFS 577
Query: 161 CLTNMTFQNVFAVISVFCSELPLFMREHQNGMYRVDVYFLCKTLAEVPIFLAIPVIFTSV 220
+ NM N FA +++ LP+F ++ + + L L +PI + V++ +
Sbjct: 578 MIINMF--NGFAELALMIQRLPVFYKQRDLLFHPPWTFTLPTFLLGIPISIIESVVWVVI 635
Query: 221 MYYMVHLNPIFSRFLTATLIITMAKAILGG 250
YY + P SRF L++ + + + G
Sbjct: 636 TYYSIGFAPEASRFFKQLLLVFLIQQMAAG 665
>gnl|CDD|213178 cd12215, ChiC_BD, Chitin-binding domain of chitinase C.
Chitin-binding domain of chitinase C (ChiC) of
Streptomyces griseus and related proteins. Chitinase C
is a family 19 chitinase, and consists of a N-terminal
chitin binding domain and a C-terminal chitin-catalytic
domain that effects degradation. Chitinases function in
invertebrates in the degradation of old exoskeletons, in
fungi to utilize chitin in cell walls, and in bacteria
which use chitin as an energy source. ChiC contains the
characteristic chitin-binding aromatic residues.
Length = 42
Score = 29.5 bits (67), Expect = 0.33
Identities = 9/17 (52%), Positives = 10/17 (58%), Gaps = 5/17 (29%)
Query: 88 NGNVANRSPYKANWWTQ 104
NG V Y+A WWTQ
Sbjct: 18 NGKV-----YEAKWWTQ 29
Score = 29.5 bits (67), Expect = 0.33
Identities = 9/17 (52%), Positives = 10/17 (58%), Gaps = 5/17 (29%)
Query: 257 NGNVANRSPYKANWWTQ 273
NG V Y+A WWTQ
Sbjct: 18 NGKV-----YEAKWWTQ 29
>gnl|CDD|173544 PTZ00351, PTZ00351, adenylosuccinate synthetase; Provisional.
Length = 710
Score = 30.4 bits (68), Expect = 2.2
Identities = 17/37 (45%), Positives = 22/37 (59%), Gaps = 7/37 (18%)
Query: 14 RLG-AACPSNYNPADYF----IQLLAVVPSREETCRN 45
R+G ACPS++ P DYF I+ L +PS TC N
Sbjct: 472 RVGIGACPSSFVPQDYFSAQNIKTLRDLPS--ATCAN 506
>gnl|CDD|106886 PHA00094, VI, minor coat protein.
Length = 112
Score = 28.2 bits (63), Expect = 3.8
Identities = 17/72 (23%), Positives = 32/72 (44%), Gaps = 6/72 (8%)
Query: 376 VPIFLAIPVIFTSVMYYMVHLNPIFSRFLTATLIITMVSTVATSF-GYLISCISSSVSVA 434
+P+ L IP + + +L F++F T I + + F G ++ S+ V++
Sbjct: 1 MPVLLGIPALARFLGTLAANLIGYFAKFF--TRGIARNALAISLFIGLILGLNSALVALL 58
Query: 435 ---LSIGPPVII 443
SI PP +
Sbjct: 59 SDLASILPPDFV 70
>gnl|CDD|206335 pfam14166, YueH, YueH-like protein. The YueH-like protein family
includes the B. subtilis YueH protein, which is
functionally uncharacterized. This family of proteins is
found in bacteria. Proteins in this family are
approximately 80 amino acids in length.
Length = 80
Score = 26.9 bits (60), Expect = 6.2
Identities = 16/74 (21%), Positives = 25/74 (33%), Gaps = 10/74 (13%)
Query: 184 FMREHQNGMYRVDVYFLCKTLAEVPIFLAIPVIFTSV-MYYMVHLNPIFSR-------FL 235
+ G +VY L + E I +AIP + S + Y + L + FL
Sbjct: 5 AKILSEGGKI-ANVY-LYENKKEQYILIAIPDLEWSFEISYELDLEELNEELVMSLFKFL 62
Query: 236 TATLIITMAKAILG 249
+A I
Sbjct: 63 EEEEAEELASKITD 76
>gnl|CDD|223078 PHA03410, PHA03410, hypothetical protein; Provisional.
Length = 170
Score = 27.9 bits (62), Expect = 8.3
Identities = 14/38 (36%), Positives = 24/38 (63%), Gaps = 2/38 (5%)
Query: 409 IITMVSTVATSFGYLISCISSSVSVALSIGPPVIIPFL 446
II + +++ GYL S +SS+S+ ++ PV+ PFL
Sbjct: 111 IIWIFQVISSVVGYLFSIFTSSISLLANV--PVVGPFL 146
>gnl|CDD|221290 pfam11885, DUF3405, Protein of unknown function (DUF3405). This
family of proteins are functionally uncharacterized.
This protein is found in bacteria and eukaryotes.
Proteins in this family are typically between 636 to 810
amino acids in length.
Length = 483
Score = 28.5 bits (64), Expect = 8.3
Identities = 10/44 (22%), Positives = 16/44 (36%), Gaps = 4/44 (9%)
Query: 80 GGKMDIFSNGNVANRSPYKANWW--TQFKAVLWRSWLSVRKDPT 121
G + +F N +W+ F L+R WL + D
Sbjct: 417 GARPSVFGWDREHNFR--GTSWYYRAGFARNLYRRWLGYKVDGD 458
Score = 28.5 bits (64), Expect = 8.3
Identities = 10/44 (22%), Positives = 16/44 (36%), Gaps = 4/44 (9%)
Query: 249 GGKMDIFSNGNVANRSPYKANWW--TQFKAVLWRSWLSVRKDPT 290
G + +F N +W+ F L+R WL + D
Sbjct: 417 GARPSVFGWDREHNFR--GTSWYYRAGFARNLYRRWLGYKVDGD 458
>gnl|CDD|221721 pfam12698, ABC2_membrane_3, ABC-2 family transporter protein. This
family is related to the ABC-2 membrane transporter
family pfam01061.
Length = 278
Score = 28.1 bits (63), Expect = 8.6
Identities = 15/86 (17%), Positives = 35/86 (40%), Gaps = 3/86 (3%)
Query: 367 YFLCKTLAEVPIFLAIPVIFTSVMYYMVHLNPIFSRFLTATLIITMVSTVATSFGYLISC 426
Y L K L ++ + L I ++ ++ + + + F L L+ + + G L+
Sbjct: 139 YLLGKILGDLLVGL-IQLLIILLLLFGLGIP--FGNLLLLLLLFLLYGLAYIALGALLGS 195
Query: 427 ISSSVSVALSIGPPVIIPFLLFGGFF 452
+ + A+ + +I+ F G
Sbjct: 196 LFKNSEAAILVISILILLLSGFFGGL 221
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.330 0.141 0.438
Gapped
Lambda K H
0.267 0.0759 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 23,717,940
Number of extensions: 2323456
Number of successful extensions: 3043
Number of sequences better than 10.0: 1
Number of HSP's gapped: 3009
Number of HSP's successfully gapped: 115
Length of query: 463
Length of database: 10,937,602
Length adjustment: 100
Effective length of query: 363
Effective length of database: 6,502,202
Effective search space: 2360299326
Effective search space used: 2360299326
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.9 bits)
S2: 61 (27.2 bits)