RPS-BLAST 2.2.26 [Sep-21-2011]

Database: pdb70 
           27,921 sequences; 6,701,793 total letters

Searching..................................................done

Query= psy1567
         (463 letters)



>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
           programmed cell death; HET: DTP; 6.90A {Drosophila
           melanogaster} PDB: 3iz8_A*
          Length = 1221

 Score = 32.5 bits (73), Expect = 0.31
 Identities = 49/532 (9%), Positives = 124/532 (23%), Gaps = 203/532 (38%)

Query: 43  CRNTIEMVCDTFDRSEYGIKLAQATELRGDLQAKAILGGKMDIF--SNGNVANR---SPY 97
           C++  +M      + E    +              +              +  +      
Sbjct: 35  CKDVQDMPKSILSKEEIDHIIMSKDA---VSGTLRLF----WTLLSKQEEMVQKFVEEVL 87

Query: 98  KANW-WTQFKAVLWRSWLSVRKDPT----------------------------------- 121
           + N+ +      L     + ++ P+                                   
Sbjct: 88  RINYKF------LMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLR 141

Query: 122 --LMKVRLLQTLMVSIMIG-----L-----------------IY---FGQNLDQDGVMNI 154
             L+++R  + +++  ++G     +                 I+          + V+ +
Sbjct: 142 QALLELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEM 201

Query: 155 NGALFICLTNMTFQ------NVFAVISVFCSELPLFMREHQNGMYR----V--DVY---- 198
              L   +            N+   I    +EL   ++      Y     V  +V     
Sbjct: 202 LQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKP---YENCLLVLLNVQNAKA 258

Query: 199 -----FLCKTLA---EVPIFLAIPVIFTSVMYYMVHLNP---------IFSRFLT----- 236
                  CK L       +   +    T+    + H +          +  ++L      
Sbjct: 259 WNAFNLSCKILLTTRFKQVTDFLSAATTTH-ISLDHHSMTLTPDEVKSLLLKYLDCRPQD 317

Query: 237 ----ATLIITMAKAILGGKMDIFSNGNVANRSPYKANWWTQFKAVLWRSWLSVRK----- 287
                        +I+   +                  W  +K V      ++ +     
Sbjct: 318 LPREVLTTNPRRLSIIAESIRDG-----LAT-------WDNWKHVNCDKLTTIIESSLNV 365

Query: 288 -DPTLMKVRLLQTLMVSIMIGLIYFGQNLDQDGVMNINGALFICL-TNMTFQNVFAVISV 345
            +P   + ++   L V        F          +I   L   +  ++   +V  V++ 
Sbjct: 366 LEPAEYR-KMFDRLSV--------F-----PPSA-HIPTILLSLIWFDVIKSDVMVVVNK 410

Query: 346 FCSELPLFMREHQNGMYRV-DVYF-LCKTLAEVPI-------------------FLAIPV 384
                 L  ++ +     +  +Y  L   L                         +   +
Sbjct: 411 LHKYS-LVEKQPKESTISIPSIYLELKVKLENEYALHRSIVDHYNIPKTFDSDDLIPPYL 469

Query: 385 ---IFTSVMYYMVHLNPI--------FS------RFLTATLIITMVSTVATS 419
               ++ + +   HL  I        F       RFL   +     +  A+ 
Sbjct: 470 DQYFYSHIGH---HLKNIEHPERMTLFRMVFLDFRFLEQKIRHDSTAWNASG 518


>2xu0_A Erythrocyte membrane protein 1; adhesion, virulence,
           duffy-binding-like-DO; 2.06A {Plasmodium falciparum palo
           alto}
          Length = 487

 Score = 32.1 bits (73), Expect = 0.37
 Identities = 12/47 (25%), Positives = 19/47 (40%), Gaps = 12/47 (25%)

Query: 21  SNYNPADYFIQLLAVVPSREETCRNTI--EMVCD------TFDRSEY 59
            +Y+  D F+ LL    +  + C +    +   D      TF  SEY
Sbjct: 424 KSYSTIDKFLNLL----NNGKHCHDNKDEKNKIDFNKPIKTFSISEY 466


>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
           acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
           synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
          Length = 2006

 Score = 31.6 bits (71), Expect = 0.82
 Identities = 59/353 (16%), Positives = 97/353 (27%), Gaps = 136/353 (38%)

Query: 3   PQQQTFFQFGLRLGA--ACPSNYNPADYF---------IQLLAVVPSREETCRNTIEMVC 51
              +  F  GL +      PSN    DY          I ++ +      T +       
Sbjct: 203 LDAEKVFTQGLNILEWLENPSNTPDKDYLLSIPISCPLIGVIQLA-HYVVTAKL------ 255

Query: 52  DTFDRSEYGIKLAQATELRGDLQAKAILGGKMDIFSNGNVANRSPYKANWWTQF-----K 106
                   G       ELR  L+     G    + +   +A     + + W  F     K
Sbjct: 256 -------LGFTPG---ELRSYLKG--ATGHSQGLVTAVAIA-----ETDSWESFFVSVRK 298

Query: 107 AVLWRSWLSVR---------------KD--------PTLM-KVRLLQTLMVSIMIGLIYF 142
           A+    ++ VR               +D        P+ M  +  L    V   +     
Sbjct: 299 AITVLFFIGVRCYEAYPNTSLPPSILEDSLENNEGVPSPMLSISNLTQEQVQDYVN--KT 356

Query: 143 GQNLDQDGVMNI---NGAL-FIC------LT--NMTFQNVFA-----------------V 173
             +L     + I   NGA   +       L   N+T +   A                  
Sbjct: 357 NSHLPAGKQVEISLVNGAKNLVVSGPPQSLYGLNLTLRKAKAPSGLDQSRIPFSERKLKF 416

Query: 174 ISVFCSELPLFMREHQNGMYRVDVYFLCKTLAEVPIF-----LAIPVIFT---SVMYYMV 225
            + F   LP+    H + +       + K L +  +      + IPV  T   S +    
Sbjct: 417 SNRF---LPVASPFHSHLLVPA-SDLINKDLVKNNVSFNAKDIQIPVYDTFDGSDL---- 468

Query: 226 HLNPIFSRFLTATLIITMAKAILGGKMDIFSNGNVANRSPYKANW--WTQFKA 276
                  R L+ ++   +   I+              R P    W   TQFKA
Sbjct: 469 -------RVLSGSISERIVDCII--------------RLP--VKWETTTQFKA 498


  Database: pdb70
    Posted date:  Sep 4, 2012  3:40 AM
  Number of letters in database: 6,701,793
  Number of sequences in database:  27,921
  
Lambda     K      H
   0.330    0.141    0.438 

Gapped
Lambda     K      H
   0.267   0.0616    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 7,022,169
Number of extensions: 409370
Number of successful extensions: 798
Number of sequences better than 10.0: 1
Number of HSP's gapped: 794
Number of HSP's successfully gapped: 11
Length of query: 463
Length of database: 6,701,793
Length adjustment: 97
Effective length of query: 366
Effective length of database: 3,993,456
Effective search space: 1461604896
Effective search space used: 1461604896
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.9 bits)
S2: 59 (26.7 bits)