RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy1567
         (463 letters)



>d1aiwa_ b.72.2.1 (A:) Cellulose-binding domain of endoglucanase Z
           {Erwinia chrysanthemi [TaxId: 556]}
          Length = 62

 Score = 27.1 bits (60), Expect = 0.76
 Identities = 7/17 (41%), Positives = 9/17 (52%), Gaps = 5/17 (29%)

Query: 88  NGNVANRSPYKANWWTQ 104
            GN+     Y ANW+T 
Sbjct: 35  KGNL-----YTANWYTA 46



 Score = 27.1 bits (60), Expect = 0.76
 Identities = 7/17 (41%), Positives = 9/17 (52%), Gaps = 5/17 (29%)

Query: 257 NGNVANRSPYKANWWTQ 273
            GN+     Y ANW+T 
Sbjct: 35  KGNL-----YTANWYTA 46


>d1c3ga2 b.4.1.1 (A:260-349) Heat shock protein 40 Sis1 {Baker's
           yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
          Length = 90

 Score = 25.7 bits (56), Expect = 5.2
 Identities = 6/39 (15%), Positives = 12/39 (30%)

Query: 235 LTATLIITMAKAILGGKMDIFSNGNVANRSPYKANWWTQ 273
           L  TL ++  +++LG    I +                 
Sbjct: 9   LIYTLPLSFKESLLGFSKTIQTIDGRTLPLSRVQPVQPS 47


>d1nlta2 b.4.1.1 (A:258-337) Mitochondrial protein import protein
           mas5 (Hsp40, Ydj1), C-terminal domain {Baker's yeast
           (Saccharomyces cerevisiae) [TaxId: 4932]}
          Length = 80

 Score = 25.3 bits (55), Expect = 5.6
 Identities = 6/45 (13%), Positives = 10/45 (22%)

Query: 235 LTATLIITMAKAILGGKMDIFSNGNVANRSPYKANWWTQFKAVLW 279
           L     I +  AI GG+  +        +                
Sbjct: 9   LVYEAEIDLLTAIAGGEFALEHVSGDWLKVGIVPGEVIAPGMRKV 53


>d1gnla_ e.26.1.1 (A:) Hybrid cluster protein (prismane protein)
           {Desulfovibrio desulfuricans [TaxId: 876]}
          Length = 543

 Score = 27.1 bits (60), Expect = 5.7
 Identities = 14/57 (24%), Positives = 21/57 (36%), Gaps = 10/57 (17%)

Query: 118 KDPTLMKVRLLQTLMVSIMIGLIYF-------GQNLDQDGVMNINGALFICLTNMTF 167
           K P       LQ  ++ +  GL          G+ +D      + G LF  +TN  F
Sbjct: 26  KKPETAA---LQDALIYVTKGLGQIATRLRAEGKAVDHRIDRLVTGNLFATITNANF 79



 Score = 27.1 bits (60), Expect = 5.7
 Identities = 14/57 (24%), Positives = 21/57 (36%), Gaps = 10/57 (17%)

Query: 287 KDPTLMKVRLLQTLMVSIMIGLIYF-------GQNLDQDGVMNINGALFICLTNMTF 336
           K P       LQ  ++ +  GL          G+ +D      + G LF  +TN  F
Sbjct: 26  KKPETAA---LQDALIYVTKGLGQIATRLRAEGKAVDHRIDRLVTGNLFATITNANF 79


>d1gnta_ e.26.1.1 (A:) Hybrid cluster protein (prismane protein)
           {Desulfovibrio vulgaris [TaxId: 881]}
          Length = 553

 Score = 27.0 bits (60), Expect = 5.9
 Identities = 12/56 (21%), Positives = 24/56 (42%), Gaps = 9/56 (16%)

Query: 118 KDPTLMKVRLLQTLMVSIMIGLIYFGQNLDQDGVMN------INGALFICLTNMTF 167
           K         LQ L++ ++ G+  +G+ L + G  +      +   LF  +TN  +
Sbjct: 23  KPEETAN---LQDLLIFVLRGIAIYGEKLKELGQPDRSNDDFVLQGLFATITNANW 75



 Score = 27.0 bits (60), Expect = 5.9
 Identities = 12/56 (21%), Positives = 24/56 (42%), Gaps = 9/56 (16%)

Query: 287 KDPTLMKVRLLQTLMVSIMIGLIYFGQNLDQDGVMN------INGALFICLTNMTF 336
           K         LQ L++ ++ G+  +G+ L + G  +      +   LF  +TN  +
Sbjct: 23  KPEETAN---LQDLLIFVLRGIAIYGEKLKELGQPDRSNDDFVLQGLFATITNANW 75


>d1srqa_ e.55.1.1 (A:) Rap1 GTPase-activating protein 1, Rap1GAP
           {Human (Homo sapiens) [TaxId: 9606]}
          Length = 336

 Score = 26.4 bits (58), Expect = 7.8
 Identities = 15/74 (20%), Positives = 25/74 (33%), Gaps = 16/74 (21%)

Query: 167 FQNVFAVISVFCSELPLFMREHQNGMYRVDVYFLCKTLAEVPIFLAIPVIFTSVMYYMVH 226
           F + + V+                 +Y+V V    +   +VP F   P +    ++    
Sbjct: 236 FLHAYVVVQAEGGGPD-------GPLYKVSVT--ARD--DVPFFG--PPLPDPAVFRK-- 280

Query: 227 LNPIFSRFLTATLI 240
             P F  FL   LI
Sbjct: 281 -GPEFQEFLLTKLI 293



 Score = 26.4 bits (58), Expect = 7.8
 Identities = 15/74 (20%), Positives = 25/74 (33%), Gaps = 16/74 (21%)

Query: 336 FQNVFAVISVFCSELPLFMREHQNGMYRVDVYFLCKTLAEVPIFLAIPVIFTSVMYYMVH 395
           F + + V+                 +Y+V V    +   +VP F   P +    ++    
Sbjct: 236 FLHAYVVVQAEGGGPD-------GPLYKVSVT--ARD--DVPFFG--PPLPDPAVFRK-- 280

Query: 396 LNPIFSRFLTATLI 409
             P F  FL   LI
Sbjct: 281 -GPEFQEFLLTKLI 293


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.330    0.141    0.438 

Gapped
Lambda     K      H
   0.267   0.0522    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,708,373
Number of extensions: 77036
Number of successful extensions: 244
Number of sequences better than 10.0: 1
Number of HSP's gapped: 244
Number of HSP's successfully gapped: 18
Length of query: 463
Length of database: 2,407,596
Length adjustment: 88
Effective length of query: 375
Effective length of database: 1,199,356
Effective search space: 449758500
Effective search space used: 449758500
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.9 bits)
S2: 55 (25.4 bits)